0.009757
0.000000
0.001707
0.000000
0.022544
0.000000
0.000000
0.000000
0.015785
0.00000
0.00000
0.00000
Weber, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
99.92
90.00
102.493
44.358
64.314
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C10 H17 N6 O12 P3
506.196
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
P
N
15
N
O
N
16
N
O
N
17
N
O
N
18
N
P
N
19
N
O
N
20
N
O
N
21
N
N
N
22
N
P
N
23
N
O
N
24
N
O
N
25
N
O
N
26
N
O
N
27
N
C
N
28
R
C
N
29
N
O
N
30
S
C
N
31
N
O
N
32
R
C
N
33
N
O
N
34
R
C
Y
35
N
N
Y
36
N
C
Y
37
N
N
Y
38
N
C
Y
39
N
C
N
40
N
N
Y
41
N
N
Y
42
N
C
Y
43
N
N
Y
44
N
C
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
N
N
63
S
C
N
64
N
C
N
65
N
O
N
66
N
C
N
67
N
C
N
68
N
C
N
69
N
N
N
70
N
C
N
71
N
N
N
72
N
N
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
N
N
107
S
C
N
108
N
C
N
109
N
O
N
110
N
C
N
111
N
C
N
112
N
O
N
113
N
O
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
N
N
123
R
C
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
S
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
S
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
N
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
N
N
157
S
C
N
158
N
C
N
159
N
O
N
160
N
C
N
161
N
C
N
162
N
C
N
163
N
O
N
164
N
O
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
N
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
O
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
N
N
186
S
C
N
187
N
C
N
188
N
O
N
189
N
C
Y
190
N
C
Y
191
N
N
Y
192
N
C
Y
193
N
C
Y
194
N
N
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
S
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
N
N
254
S
C
N
255
N
C
N
256
N
O
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
N
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
N
C
N
283
N
C
N
284
N
S
N
285
N
C
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
MG
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
N
327
N
C
N
328
N
C
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
O
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
R
C
N
358
N
O
N
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
N
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
N
408
N
O
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
N
426
N
C
N
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
Y
48
N
sing
Y
49
N
sing
Y
50
N
doub
N
51
N
sing
Y
52
N
sing
Y
53
N
sing
Y
54
N
doub
N
55
N
sing
Y
56
N
doub
N
57
N
sing
N
58
N
sing
Y
59
N
sing
Y
60
N
doub
N
61
N
sing
Y
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
doub
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
Y
190
N
sing
Y
191
N
doub
Y
192
N
doub
N
193
N
sing
Y
194
N
sing
N
195
N
sing
Y
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
doub
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
doub
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
doub
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
Y
298
N
doub
Y
299
N
sing
Y
300
N
sing
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
doub
N
305
N
sing
Y
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
Y
367
N
doub
Y
368
N
sing
Y
369
N
sing
N
370
N
sing
Y
371
N
doub
Y
372
N
sing
Y
373
N
sing
N
374
N
sing
Y
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
doub
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
doub
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
UK
Chem.Commun.(Camb.)
1364-548X
52
12606
12609
10.1039/c6cc05959g
27711380
Genetically encoded fluorophenylalanines enable insights into the recognition of lysine trimethylation by an epigenetic reader.
2016
10.2210/pdb5k1p/pdb
pdb_00005k1p
100
1
PIXEL
2013-08-23
DECTRIS PILATUS 2M-F
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
X06DA
SLS
1.00
SYNCHROTRON
SLS BEAMLINE X06DA
31769.412
Pyrrolysine--tRNA ligase
6.1.1.26
catalytic domain (UNP residues 188-454)
N346A, C348A
1
man
polymer
506.196
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
1
syn
non-polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
18.015
water
273
nat
water
Pyrrolysine--tRNA(Pyl) ligase,Pyrrolysyl-tRNA synthetase,PylRS
no
no
MPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKSPI
LIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLA
FAQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMVYGDTLDVMHGDLELSSAVVGPIPLDREWGIDKPWIGAGFGLER
LLKVKHDFKNIKRAARSESYYNGISTNLHHHHHH
MPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKSPI
LIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLA
FAQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMVYGDTLDVMHGDLELSSAVVGPIPLDREWGIDKPWIGAGFGLER
LLKVKHDFKNIKRAARSESYYNGISTNLHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
274
pylS, MM_1445
2209
Methanosarcina mazei
469008
Escherichia coli
BL21(DE3)
Biological sequence
1
2.32
47.08
VAPOR DIFFUSION, HANGING DROP
9.5
0.2M MgCl2, 0.1M TrisHCl pH9.5, 20% (w/v) PEG4000
291
pdbx_audit_support
pdbx_struct_oper_list
pdbx_audit_support
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
repository
Initial release
Database references
Author supporting evidence
Derived calculations
Author supporting evidence
Data collection
Database references
Derived calculations
Refinement description
1
0
2016-10-19
1
1
2016-11-02
1
2
2017-09-27
1
3
2019-11-27
1
4
2023-09-27
_pdbx_audit_support.funding_organization
_pdbx_struct_oper_list.symmetry_operation
_pdbx_audit_support.funding_organization
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
United States
National Institutes of Health/National Cancer Institute (NIH/NCI)
CA161158
United States
National Science Foundation (NSF, United States)
CHEM-1148684
United States
Welch Foundation
A-1715
Germany
German Research Foundation (DFG)
SU 726/6-1
N
RCSB
Y
RCSB
2016-05-18
REL
REL
ANP
PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER
MG
MAGNESIUM ION
HOH
water
4CS2
PDB ID 4CS2
PDB
experimental model
ANP
1
2
ANP
ANP
501
A
MG
1
3
MG
MG
502
A
MG
2
3
MG
MG
503
A
HOH
191
4
HOH
HOH
601
A
HOH
181
4
HOH
HOH
602
A
HOH
209
4
HOH
HOH
603
A
HOH
173
4
HOH
HOH
604
A
HOH
163
4
HOH
HOH
605
A
HOH
16
4
HOH
HOH
606
A
HOH
240
4
HOH
HOH
607
A
HOH
99
4
HOH
HOH
608
A
HOH
162
4
HOH
HOH
609
A
HOH
166
4
HOH
HOH
610
A
HOH
137
4
HOH
HOH
611
A
HOH
110
4
HOH
HOH
612
A
HOH
270
4
HOH
HOH
613
A
HOH
171
4
HOH
HOH
614
A
HOH
114
4
HOH
HOH
615
A
HOH
196
4
HOH
HOH
616
A
HOH
32
4
HOH
HOH
617
A
HOH
188
4
HOH
HOH
618
A
HOH
111
4
HOH
HOH
619
A
HOH
26
4
HOH
HOH
620
A
HOH
155
4
HOH
HOH
621
A
HOH
92
4
HOH
HOH
622
A
HOH
251
4
HOH
HOH
623
A
HOH
62
4
HOH
HOH
624
A
HOH
230
4
HOH
HOH
625
A
HOH
259
4
HOH
HOH
626
A
HOH
85
4
HOH
HOH
627
A
HOH
12
4
HOH
HOH
628
A
HOH
64
4
HOH
HOH
629
A
HOH
53
4
HOH
HOH
630
A
HOH
138
4
HOH
HOH
631
A
HOH
38
4
HOH
HOH
632
A
HOH
145
4
HOH
HOH
633
A
HOH
105
4
HOH
HOH
634
A
HOH
158
4
HOH
HOH
635
A
HOH
22
4
HOH
HOH
636
A
HOH
75
4
HOH
HOH
637
A
HOH
49
4
HOH
HOH
638
A
HOH
264
4
HOH
HOH
639
A
HOH
156
4
HOH
HOH
640
A
HOH
210
4
HOH
HOH
641
A
HOH
192
4
HOH
HOH
642
A
HOH
79
4
HOH
HOH
643
A
HOH
51
4
HOH
HOH
644
A
HOH
185
4
HOH
HOH
645
A
HOH
17
4
HOH
HOH
646
A
HOH
44
4
HOH
HOH
647
A
HOH
142
4
HOH
HOH
648
A
HOH
39
4
HOH
HOH
649
A
HOH
212
4
HOH
HOH
650
A
HOH
175
4
HOH
HOH
651
A
HOH
153
4
HOH
HOH
652
A
HOH
73
4
HOH
HOH
653
A
HOH
139
4
HOH
HOH
654
A
HOH
6
4
HOH
HOH
655
A
HOH
86
4
HOH
HOH
656
A
HOH
135
4
HOH
HOH
657
A
HOH
131
4
HOH
HOH
658
A
HOH
55
4
HOH
HOH
659
A
HOH
132
4
HOH
HOH
660
A
HOH
237
4
HOH
HOH
661
A
HOH
96
4
HOH
HOH
662
A
HOH
126
4
HOH
HOH
663
A
HOH
266
4
HOH
HOH
664
A
HOH
100
4
HOH
HOH
665
A
HOH
84
4
HOH
HOH
666
A
HOH
40
4
HOH
HOH
667
A
HOH
95
4
HOH
HOH
668
A
HOH
98
4
HOH
HOH
669
A
HOH
14
4
HOH
HOH
670
A
HOH
11
4
HOH
HOH
671
A
HOH
63
4
HOH
HOH
672
A
HOH
24
4
HOH
HOH
673
A
HOH
25
4
HOH
HOH
674
A
HOH
97
4
HOH
HOH
675
A
HOH
20
4
HOH
HOH
676
A
HOH
154
4
HOH
HOH
677
A
HOH
152
4
HOH
HOH
678
A
HOH
93
4
HOH
HOH
679
A
HOH
91
4
HOH
HOH
680
A
HOH
127
4
HOH
HOH
681
A
HOH
2
4
HOH
HOH
682
A
HOH
207
4
HOH
HOH
683
A
HOH
159
4
HOH
HOH
684
A
HOH
199
4
HOH
HOH
685
A
HOH
7
4
HOH
HOH
686
A
HOH
35
4
HOH
HOH
687
A
HOH
3
4
HOH
HOH
688
A
HOH
28
4
HOH
HOH
689
A
HOH
167
4
HOH
HOH
690
A
HOH
43
4
HOH
HOH
691
A
HOH
235
4
HOH
HOH
692
A
HOH
59
4
HOH
HOH
693
A
HOH
228
4
HOH
HOH
694
A
HOH
89
4
HOH
HOH
695
A
HOH
268
4
HOH
HOH
696
A
HOH
18
4
HOH
HOH
697
A
HOH
21
4
HOH
HOH
698
A
HOH
180
4
HOH
HOH
699
A
HOH
226
4
HOH
HOH
700
A
HOH
57
4
HOH
HOH
701
A
HOH
15
4
HOH
HOH
702
A
HOH
255
4
HOH
HOH
703
A
HOH
31
4
HOH
HOH
704
A
HOH
193
4
HOH
HOH
705
A
HOH
149
4
HOH
HOH
706
A
HOH
214
4
HOH
HOH
707
A
HOH
48
4
HOH
HOH
708
A
HOH
102
4
HOH
HOH
709
A
HOH
27
4
HOH
HOH
710
A
HOH
248
4
HOH
HOH
711
A
HOH
83
4
HOH
HOH
712
A
HOH
90
4
HOH
HOH
713
A
HOH
4
4
HOH
HOH
714
A
HOH
222
4
HOH
HOH
715
A
HOH
72
4
HOH
HOH
716
A
HOH
76
4
HOH
HOH
717
A
HOH
30
4
HOH
HOH
718
A
HOH
68
4
HOH
HOH
719
A
HOH
147
4
HOH
HOH
720
A
HOH
202
4
HOH
HOH
721
A
HOH
50
4
HOH
HOH
722
A
HOH
45
4
HOH
HOH
723
A
HOH
71
4
HOH
HOH
724
A
HOH
70
4
HOH
HOH
725
A
HOH
121
4
HOH
HOH
726
A
HOH
94
4
HOH
HOH
727
A
HOH
238
4
HOH
HOH
728
A
HOH
242
4
HOH
HOH
729
A
HOH
177
4
HOH
HOH
730
A
HOH
221
4
HOH
HOH
731
A
HOH
65
4
HOH
HOH
732
A
HOH
13
4
HOH
HOH
733
A
HOH
10
4
HOH
HOH
734
A
HOH
146
4
HOH
HOH
735
A
HOH
116
4
HOH
HOH
736
A
HOH
133
4
HOH
HOH
737
A
HOH
219
4
HOH
HOH
738
A
HOH
182
4
HOH
HOH
739
A
HOH
82
4
HOH
HOH
740
A
HOH
140
4
HOH
HOH
741
A
HOH
29
4
HOH
HOH
742
A
HOH
136
4
HOH
HOH
743
A
HOH
1
4
HOH
HOH
744
A
HOH
8
4
HOH
HOH
745
A
HOH
218
4
HOH
HOH
746
A
HOH
23
4
HOH
HOH
747
A
HOH
37
4
HOH
HOH
748
A
HOH
241
4
HOH
HOH
749
A
HOH
33
4
HOH
HOH
750
A
HOH
112
4
HOH
HOH
751
A
HOH
165
4
HOH
HOH
752
A
HOH
41
4
HOH
HOH
753
A
HOH
58
4
HOH
HOH
754
A
HOH
172
4
HOH
HOH
755
A
HOH
81
4
HOH
HOH
756
A
HOH
258
4
HOH
HOH
757
A
HOH
106
4
HOH
HOH
758
A
HOH
151
4
HOH
HOH
759
A
HOH
224
4
HOH
HOH
760
A
HOH
87
4
HOH
HOH
761
A
HOH
274
4
HOH
HOH
762
A
HOH
5
4
HOH
HOH
763
A
HOH
107
4
HOH
HOH
764
A
HOH
277
4
HOH
HOH
765
A
HOH
101
4
HOH
HOH
766
A
HOH
103
4
HOH
HOH
767
A
HOH
195
4
HOH
HOH
768
A
HOH
115
4
HOH
HOH
769
A
HOH
229
4
HOH
HOH
770
A
HOH
36
4
HOH
HOH
771
A
HOH
125
4
HOH
HOH
772
A
HOH
183
4
HOH
HOH
773
A
HOH
257
4
HOH
HOH
774
A
HOH
161
4
HOH
HOH
775
A
HOH
56
4
HOH
HOH
776
A
HOH
88
4
HOH
HOH
777
A
HOH
9
4
HOH
HOH
778
A
HOH
60
4
HOH
HOH
779
A
HOH
67
4
HOH
HOH
780
A
HOH
174
4
HOH
HOH
781
A
HOH
164
4
HOH
HOH
782
A
HOH
34
4
HOH
HOH
783
A
HOH
234
4
HOH
HOH
784
A
HOH
204
4
HOH
HOH
785
A
HOH
54
4
HOH
HOH
786
A
HOH
46
4
HOH
HOH
787
A
HOH
190
4
HOH
HOH
788
A
HOH
69
4
HOH
HOH
789
A
HOH
144
4
HOH
HOH
790
A
HOH
261
4
HOH
HOH
791
A
HOH
120
4
HOH
HOH
792
A
HOH
168
4
HOH
HOH
793
A
HOH
197
4
HOH
HOH
794
A
HOH
256
4
HOH
HOH
795
A
HOH
109
4
HOH
HOH
796
A
HOH
275
4
HOH
HOH
797
A
HOH
104
4
HOH
HOH
798
A
HOH
66
4
HOH
HOH
799
A
HOH
249
4
HOH
HOH
800
A
HOH
170
4
HOH
HOH
801
A
HOH
77
4
HOH
HOH
802
A
HOH
80
4
HOH
HOH
803
A
HOH
200
4
HOH
HOH
804
A
HOH
260
4
HOH
HOH
805
A
HOH
78
4
HOH
HOH
806
A
HOH
233
4
HOH
HOH
807
A
HOH
227
4
HOH
HOH
808
A
HOH
42
4
HOH
HOH
809
A
HOH
74
4
HOH
HOH
810
A
HOH
225
4
HOH
HOH
811
A
HOH
122
4
HOH
HOH
812
A
HOH
187
4
HOH
HOH
813
A
HOH
179
4
HOH
HOH
814
A
HOH
150
4
HOH
HOH
815
A
HOH
217
4
HOH
HOH
816
A
HOH
178
4
HOH
HOH
817
A
HOH
280
4
HOH
HOH
818
A
HOH
203
4
HOH
HOH
819
A
HOH
186
4
HOH
HOH
820
A
HOH
52
4
HOH
HOH
821
A
HOH
246
4
HOH
HOH
822
A
HOH
263
4
HOH
HOH
823
A
HOH
232
4
HOH
HOH
824
A
HOH
143
4
HOH
HOH
825
A
HOH
279
4
HOH
HOH
826
A
HOH
271
4
HOH
HOH
827
A
HOH
206
4
HOH
HOH
828
A
HOH
157
4
HOH
HOH
829
A
HOH
160
4
HOH
HOH
830
A
HOH
231
4
HOH
HOH
831
A
HOH
281
4
HOH
HOH
832
A
HOH
272
4
HOH
HOH
833
A
HOH
134
4
HOH
HOH
834
A
HOH
267
4
HOH
HOH
835
A
HOH
276
4
HOH
HOH
836
A
HOH
130
4
HOH
HOH
837
A
HOH
169
4
HOH
HOH
838
A
HOH
216
4
HOH
HOH
839
A
HOH
61
4
HOH
HOH
840
A
HOH
201
4
HOH
HOH
841
A
HOH
215
4
HOH
HOH
842
A
HOH
124
4
HOH
HOH
843
A
HOH
19
4
HOH
HOH
844
A
HOH
113
4
HOH
HOH
845
A
HOH
283
4
HOH
HOH
846
A
HOH
129
4
HOH
HOH
847
A
HOH
123
4
HOH
HOH
848
A
HOH
278
4
HOH
HOH
849
A
HOH
117
4
HOH
HOH
850
A
HOH
189
4
HOH
HOH
851
A
HOH
118
4
HOH
HOH
852
A
HOH
47
4
HOH
HOH
853
A
HOH
148
4
HOH
HOH
854
A
HOH
236
4
HOH
HOH
855
A
HOH
108
4
HOH
HOH
856
A
HOH
273
4
HOH
HOH
857
A
HOH
184
4
HOH
HOH
858
A
HOH
247
4
HOH
HOH
859
A
HOH
194
4
HOH
HOH
860
A
HOH
213
4
HOH
HOH
861
A
HOH
176
4
HOH
HOH
862
A
HOH
119
4
HOH
HOH
863
A
HOH
128
4
HOH
HOH
864
A
HOH
243
4
HOH
HOH
865
A
HOH
262
4
HOH
HOH
866
A
HOH
239
4
HOH
HOH
867
A
HOH
269
4
HOH
HOH
868
A
HOH
141
4
HOH
HOH
869
A
HOH
282
4
HOH
HOH
870
A
HOH
265
4
HOH
HOH
871
A
HOH
205
4
HOH
HOH
872
A
HOH
198
4
HOH
HOH
873
A
n
1
187
A
n
2
188
A
ALA
189
n
3
ALA
189
A
LEU
190
n
4
LEU
190
A
THR
191
n
5
THR
191
A
LYS
192
n
6
LYS
192
A
SER
193
n
7
SER
193
A
GLN
194
n
8
GLN
194
A
THR
195
n
9
THR
195
A
ASP
196
n
10
ASP
196
A
ARG
197
n
11
ARG
197
A
LEU
198
n
12
LEU
198
A
GLU
199
n
13
GLU
199
A
VAL
200
n
14
VAL
200
A
LEU
201
n
15
LEU
201
A
LEU
202
n
16
LEU
202
A
ASN
203
n
17
ASN
203
A
PRO
204
n
18
PRO
204
A
LYS
205
n
19
LYS
205
A
ASP
206
n
20
ASP
206
A
GLU
207
n
21
GLU
207
A
ILE
208
n
22
ILE
208
A
SER
209
n
23
SER
209
A
LEU
210
n
24
LEU
210
A
ASN
211
n
25
ASN
211
A
SER
212
n
26
SER
212
A
GLY
213
n
27
GLY
213
A
LYS
214
n
28
LYS
214
A
PRO
215
n
29
PRO
215
A
PHE
216
n
30
PHE
216
A
ARG
217
n
31
ARG
217
A
GLU
218
n
32
GLU
218
A
LEU
219
n
33
LEU
219
A
GLU
220
n
34
GLU
220
A
SER
221
n
35
SER
221
A
GLU
222
n
36
GLU
222
A
LEU
223
n
37
LEU
223
A
LEU
224
n
38
LEU
224
A
SER
225
n
39
SER
225
A
ARG
226
n
40
ARG
226
A
ARG
227
n
41
ARG
227
A
LYS
228
n
42
LYS
228
A
LYS
229
n
43
LYS
229
A
ASP
230
n
44
ASP
230
A
LEU
231
n
45
LEU
231
A
GLN
232
n
46
GLN
232
A
GLN
233
n
47
GLN
233
A
ILE
234
n
48
ILE
234
A
TYR
235
n
49
TYR
235
A
ALA
236
n
50
ALA
236
A
GLU
237
n
51
GLU
237
A
GLU
238
n
52
GLU
238
A
ARG
239
n
53
ARG
239
A
GLU
240
n
54
GLU
240
A
ASN
241
n
55
ASN
241
A
TYR
242
n
56
TYR
242
A
LEU
243
n
57
LEU
243
A
GLY
244
n
58
GLY
244
A
LYS
245
n
59
LYS
245
A
LEU
246
n
60
LEU
246
A
GLU
247
n
61
GLU
247
A
ARG
248
n
62
ARG
248
A
GLU
249
n
63
GLU
249
A
ILE
250
n
64
ILE
250
A
THR
251
n
65
THR
251
A
ARG
252
n
66
ARG
252
A
PHE
253
n
67
PHE
253
A
PHE
254
n
68
PHE
254
A
VAL
255
n
69
VAL
255
A
ASP
256
n
70
ASP
256
A
ARG
257
n
71
ARG
257
A
GLY
258
n
72
GLY
258
A
PHE
259
n
73
PHE
259
A
LEU
260
n
74
LEU
260
A
GLU
261
n
75
GLU
261
A
ILE
262
n
76
ILE
262
A
LYS
263
n
77
LYS
263
A
SER
264
n
78
SER
264
A
PRO
265
n
79
PRO
265
A
ILE
266
n
80
ILE
266
A
LEU
267
n
81
LEU
267
A
ILE
268
n
82
ILE
268
A
PRO
269
n
83
PRO
269
A
LEU
270
n
84
LEU
270
A
GLU
271
n
85
GLU
271
A
TYR
272
n
86
TYR
272
A
ILE
273
n
87
ILE
273
A
GLU
274
n
88
GLU
274
A
ARG
275
n
89
ARG
275
A
MET
276
n
90
MET
276
A
GLY
277
n
91
GLY
277
A
ILE
278
n
92
ILE
278
A
ASP
279
n
93
ASP
279
A
ASN
280
n
94
ASN
280
A
ASP
281
n
95
ASP
281
A
THR
282
n
96
THR
282
A
GLU
283
n
97
GLU
283
A
LEU
284
n
98
LEU
284
A
SER
285
n
99
SER
285
A
LYS
286
n
100
LYS
286
A
GLN
287
n
101
GLN
287
A
ILE
288
n
102
ILE
288
A
PHE
289
n
103
PHE
289
A
ARG
290
n
104
ARG
290
A
VAL
291
n
105
VAL
291
A
ASP
292
n
106
ASP
292
A
LYS
293
n
107
LYS
293
A
ASN
294
n
108
ASN
294
A
PHE
295
n
109
PHE
295
A
CYS
296
n
110
CYS
296
A
LEU
297
n
111
LEU
297
A
ARG
298
n
112
ARG
298
A
PRO
299
n
113
PRO
299
A
MET
300
n
114
MET
300
A
LEU
301
n
115
LEU
301
A
ALA
302
n
116
ALA
302
A
PRO
303
n
117
PRO
303
A
ASN
304
n
118
ASN
304
A
LEU
305
n
119
LEU
305
A
TYR
306
n
120
TYR
306
A
ASN
307
n
121
ASN
307
A
TYR
308
n
122
TYR
308
A
LEU
309
n
123
LEU
309
A
ARG
310
n
124
ARG
310
A
LYS
311
n
125
LYS
311
A
LEU
312
n
126
LEU
312
A
ASP
313
n
127
ASP
313
A
ARG
314
n
128
ARG
314
A
ALA
315
n
129
ALA
315
A
LEU
316
n
130
LEU
316
A
PRO
317
n
131
PRO
317
A
ASP
318
n
132
ASP
318
A
PRO
319
n
133
PRO
319
A
ILE
320
n
134
ILE
320
A
LYS
321
n
135
LYS
321
A
ILE
322
n
136
ILE
322
A
PHE
323
n
137
PHE
323
A
GLU
324
n
138
GLU
324
A
ILE
325
n
139
ILE
325
A
GLY
326
n
140
GLY
326
A
PRO
327
n
141
PRO
327
A
CYS
328
n
142
CYS
328
A
TYR
329
n
143
TYR
329
A
ARG
330
n
144
ARG
330
A
LYS
331
n
145
LYS
331
A
GLU
332
n
146
GLU
332
A
SER
333
n
147
SER
333
A
ASP
334
n
148
ASP
334
A
GLY
335
n
149
GLY
335
A
LYS
336
n
150
LYS
336
A
GLU
337
n
151
GLU
337
A
HIS
338
n
152
HIS
338
A
LEU
339
n
153
LEU
339
A
GLU
340
n
154
GLU
340
A
GLU
341
n
155
GLU
341
A
PHE
342
n
156
PHE
342
A
THR
343
n
157
THR
343
A
MET
344
n
158
MET
344
A
LEU
345
n
159
LEU
345
A
ALA
346
n
160
ALA
346
A
PHE
347
n
161
PHE
347
A
ALA
348
n
162
ALA
348
A
GLN
349
n
163
GLN
349
A
MET
350
n
164
MET
350
A
GLY
351
n
165
GLY
351
A
SER
352
n
166
SER
352
A
GLY
353
n
167
GLY
353
A
CYS
354
n
168
CYS
354
A
THR
355
n
169
THR
355
A
ARG
356
n
170
ARG
356
A
GLU
357
n
171
GLU
357
A
ASN
358
n
172
ASN
358
A
LEU
359
n
173
LEU
359
A
GLU
360
n
174
GLU
360
A
SER
361
n
175
SER
361
A
ILE
362
n
176
ILE
362
A
ILE
363
n
177
ILE
363
A
THR
364
n
178
THR
364
A
ASP
365
n
179
ASP
365
A
PHE
366
n
180
PHE
366
A
LEU
367
n
181
LEU
367
A
ASN
368
n
182
ASN
368
A
HIS
369
n
183
HIS
369
A
LEU
370
n
184
LEU
370
A
GLY
371
n
185
GLY
371
A
ILE
372
n
186
ILE
372
A
ASP
373
n
187
ASP
373
A
PHE
374
n
188
PHE
374
A
LYS
375
n
189
LYS
375
A
ILE
376
n
190
ILE
376
A
VAL
377
n
191
VAL
377
A
GLY
378
n
192
GLY
378
A
ASP
379
n
193
ASP
379
A
SER
380
n
194
SER
380
A
CYS
381
n
195
CYS
381
A
MET
382
n
196
MET
382
A
VAL
383
n
197
VAL
383
A
TYR
384
n
198
TYR
384
A
GLY
385
n
199
GLY
385
A
ASP
386
n
200
ASP
386
A
THR
387
n
201
THR
387
A
LEU
388
n
202
LEU
388
A
ASP
389
n
203
ASP
389
A
VAL
390
n
204
VAL
390
A
MET
391
n
205
MET
391
A
HIS
392
n
206
HIS
392
A
GLY
393
n
207
GLY
393
A
ASP
394
n
208
ASP
394
A
LEU
395
n
209
LEU
395
A
GLU
396
n
210
GLU
396
A
LEU
397
n
211
LEU
397
A
SER
398
n
212
SER
398
A
SER
399
n
213
SER
399
A
ALA
400
n
214
ALA
400
A
VAL
401
n
215
VAL
401
A
VAL
402
n
216
VAL
402
A
GLY
403
n
217
GLY
403
A
PRO
404
n
218
PRO
404
A
ILE
405
n
219
ILE
405
A
PRO
406
n
220
PRO
406
A
LEU
407
n
221
LEU
407
A
ASP
408
n
222
ASP
408
A
ARG
409
n
223
ARG
409
A
GLU
410
n
224
GLU
410
A
TRP
411
n
225
TRP
411
A
GLY
412
n
226
GLY
412
A
ILE
413
n
227
ILE
413
A
ASP
414
n
228
ASP
414
A
LYS
415
n
229
LYS
415
A
PRO
416
n
230
PRO
416
A
TRP
417
n
231
TRP
417
A
ILE
418
n
232
ILE
418
A
GLY
419
n
233
GLY
419
A
ALA
420
n
234
ALA
420
A
GLY
421
n
235
GLY
421
A
PHE
422
n
236
PHE
422
A
GLY
423
n
237
GLY
423
A
LEU
424
n
238
LEU
424
A
GLU
425
n
239
GLU
425
A
ARG
426
n
240
ARG
426
A
LEU
427
n
241
LEU
427
A
LEU
428
n
242
LEU
428
A
LYS
429
n
243
LYS
429
A
VAL
430
n
244
VAL
430
A
LYS
431
n
245
LYS
431
A
HIS
432
n
246
HIS
432
A
ASP
433
n
247
ASP
433
A
PHE
434
n
248
PHE
434
A
LYS
435
n
249
LYS
435
A
ASN
436
n
250
ASN
436
A
ILE
437
n
251
ILE
437
A
LYS
438
n
252
LYS
438
A
ARG
439
n
253
ARG
439
A
ALA
440
n
254
ALA
440
A
ALA
441
n
255
ALA
441
A
ARG
442
n
256
ARG
442
A
SER
443
n
257
SER
443
A
GLU
444
n
258
GLU
444
A
SER
445
n
259
SER
445
A
TYR
446
n
260
TYR
446
A
TYR
447
n
261
TYR
447
A
ASN
448
n
262
ASN
448
A
GLY
449
n
263
GLY
449
A
ILE
450
n
264
ILE
450
A
SER
451
n
265
SER
451
A
THR
452
n
266
THR
452
A
ASN
453
n
267
ASN
453
A
LEU
454
n
268
LEU
454
A
HIS
455
n
269
HIS
455
A
HIS
456
n
270
HIS
456
A
HIS
457
n
271
HIS
457
A
HIS
458
n
272
HIS
458
A
n
273
459
A
n
274
460
A
author_and_software_defined_assembly
PISA
2
dimeric
7170
-53
23840
A
GLU
396
A
OE1
GLU
210
1_555
A
MG
502
C
MG
MG
1_555
A
GLU
396
A
OE2
GLU
210
1_555
50.9
A
GLU
396
A
OE1
GLU
210
1_555
A
MG
502
C
MG
MG
1_555
A
SER
399
A
OG
SER
213
1_555
81.2
A
GLU
396
A
OE2
GLU
210
1_555
A
MG
502
C
MG
MG
1_555
A
SER
399
A
OG
SER
213
1_555
85.0
A
GLU
396
A
OE1
GLU
210
1_555
A
MG
502
C
MG
MG
1_555
A
ANP
501
B
O1B
ANP
1_555
109.9
A
GLU
396
A
OE2
GLU
210
1_555
A
MG
502
C
MG
MG
1_555
A
ANP
501
B
O1B
ANP
1_555
91.8
A
SER
399
A
OG
SER
213
1_555
A
MG
502
C
MG
MG
1_555
A
ANP
501
B
O1B
ANP
1_555
162.6
A
GLU
396
A
OE1
GLU
210
1_555
A
MG
502
C
MG
MG
1_555
A
ANP
501
B
O1A
ANP
1_555
132.2
A
GLU
396
A
OE2
GLU
210
1_555
A
MG
502
C
MG
MG
1_555
A
ANP
501
B
O1A
ANP
1_555
83.3
A
SER
399
A
OG
SER
213
1_555
A
MG
502
C
MG
MG
1_555
A
ANP
501
B
O1A
ANP
1_555
82.1
A
ANP
501
B
O1B
ANP
1_555
A
MG
502
C
MG
MG
1_555
A
ANP
501
B
O1A
ANP
1_555
80.5
A
GLU
396
A
OE1
GLU
210
1_555
A
MG
502
C
MG
MG
1_555
A
HOH
642
E
O
HOH
1_555
67.1
A
GLU
396
A
OE2
GLU
210
1_555
A
MG
502
C
MG
MG
1_555
A
HOH
642
E
O
HOH
1_555
118.0
A
SER
399
A
OG
SER
213
1_555
A
MG
502
C
MG
MG
1_555
A
HOH
642
E
O
HOH
1_555
86.1
A
ANP
501
B
O1B
ANP
1_555
A
MG
502
C
MG
MG
1_555
A
HOH
642
E
O
HOH
1_555
110.4
A
ANP
501
B
O1A
ANP
1_555
A
MG
502
C
MG
MG
1_555
A
HOH
642
E
O
HOH
1_555
154.6
A
GLU
396
A
OE1
GLU
210
1_555
A
MG
502
C
MG
MG
1_555
A
HOH
784
E
O
HOH
1_555
140.8
A
GLU
396
A
OE2
GLU
210
1_555
A
MG
502
C
MG
MG
1_555
A
HOH
784
E
O
HOH
1_555
163.5
A
SER
399
A
OG
SER
213
1_555
A
MG
502
C
MG
MG
1_555
A
HOH
784
E
O
HOH
1_555
86.2
A
ANP
501
B
O1B
ANP
1_555
A
MG
502
C
MG
MG
1_555
A
HOH
784
E
O
HOH
1_555
92.5
A
ANP
501
B
O1A
ANP
1_555
A
MG
502
C
MG
MG
1_555
A
HOH
784
E
O
HOH
1_555
81.7
A
HOH
642
E
O
HOH
1_555
A
MG
502
C
MG
MG
1_555
A
HOH
784
E
O
HOH
1_555
75.1
A
ANP
501
B
O2G
ANP
1_555
A
MG
503
D
MG
MG
1_555
A
ANP
501
B
O2B
ANP
1_555
80.0
A
ANP
501
B
O2G
ANP
1_555
A
MG
503
D
MG
MG
1_555
A
HOH
670
E
O
HOH
1_555
94.1
A
ANP
501
B
O2B
ANP
1_555
A
MG
503
D
MG
MG
1_555
A
HOH
670
E
O
HOH
1_555
83.9
A
ANP
501
B
O2G
ANP
1_555
A
MG
503
D
MG
MG
1_555
A
HOH
722
E
O
HOH
1_555
164.7
A
ANP
501
B
O2B
ANP
1_555
A
MG
503
D
MG
MG
1_555
A
HOH
722
E
O
HOH
1_555
84.7
A
HOH
670
E
O
HOH
1_555
A
MG
503
D
MG
MG
1_555
A
HOH
722
E
O
HOH
1_555
83.6
A
ANP
501
B
O2G
ANP
1_555
A
MG
503
D
MG
MG
1_555
A
HOH
725
E
O
HOH
1_555
106.5
A
ANP
501
B
O2B
ANP
1_555
A
MG
503
D
MG
MG
1_555
A
HOH
725
E
O
HOH
1_555
166.6
A
HOH
670
E
O
HOH
1_555
A
MG
503
D
MG
MG
1_555
A
HOH
725
E
O
HOH
1_555
83.9
A
HOH
722
E
O
HOH
1_555
A
MG
503
D
MG
MG
1_555
A
HOH
725
E
O
HOH
1_555
88.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_556
-x,y,-z+1
crystal symmetry operation
-11.0795630094
0.0000000000
63.3524575650
A
N
ILE
262
A
N
ILE
76
A
O
PHE
323
A
O
PHE
137
A
N
GLU
324
A
N
GLU
138
A
O
ALA
346
A
O
ALA
160
A
N
LEU
345
A
N
LEU
159
A
O
PHE
422
A
O
PHE
236
A
O
GLY
419
A
O
GLY
233
A
N
VAL
401
A
N
VAL
215
A
O
LEU
395
A
O
LEU
209
A
N
HIS
392
A
N
HIS
206
A
O
ASP
389
A
O
ASP
203
A
N
VAL
377
A
N
VAL
191
A
N
ILE
268
A
N
ILE
82
A
O
CYS
296
A
O
CYS
110
A
O
PHE
295
A
O
PHE
109
A
N
VAL
291
A
N
VAL
105
A
N
TYR
447
A
N
TYR
261
A
O
ILE
450
A
O
ILE
264
1
A
HOH
833
E
HOH
1
A
MET
187
A
MET
1
1
Y
1
A
PRO
188
A
PRO
2
1
Y
1
A
HIS
459
A
HIS
273
1
Y
1
A
HIS
460
A
HIS
274
1
Y
1
A
A
OE1
HZ3
GLU
LYS
238
245
1.50
A
1
A
A
HD22
O
ASN
HOH
453
601
1.54
1
A
A
O
O
HOH
HOH
765
826
1.83
1
A
A
O
O
HOH
HOH
826
849
1.86
1
A
A
O
O
HOH
HOH
811
865
2.02
1
A
A
O
O
HOH
HOH
846
870
2.11
1
A
A
O
O
HOH
HOH
738
842
2.18
1
A
A
ND2
O
ASN
HOH
453
601
2.19
1
A
A
O
O
HOH
HOH
707
850
2.13
1_555
2_555
1
A
GLU
237
A
-112.83
-90.21
1
A
GLU
238
B
-121.91
-56.96
1
A
ASP
292
60.40
-153.07
1
A
CYS
354
-104.33
65.10
29.84
0.1960
0.1652
0.1668
1.499
43.281
2221
44049
5.04
96.02
0.19
1
FREE R-VALUE
1.35
21.01
0.90
1.11
PDB ID 4CS2
1.499
43.281
273
2504
33
0
2198
0.010
2311
1.100
3123
20.500
895
0.079
335
0.007
404
0.3424
0.3131
1.5319
135
2570
95.00
0.3032
0.2772
1.5675
143
2666
100.00
0.2807
0.2557
1.6067
142
2696
100.00
0.2803
0.2447
1.6501
145
2700
100.00
0.2640
0.2233
1.6987
145
2719
100.00
0.2656
0.2090
1.7535
165
2644
100.00
0.2131
0.1871
1.8162
142
2721
100.00
0.2440
0.1857
1.8889
134
2706
100.00
0.1989
0.1921
1.9749
102
1948
72.00
0.1931
0.1613
2.0790
152
2700
99.00
0.1810
0.1539
2.2093
134
2714
100.00
0.1936
0.1627
2.3798
116
2272
83.00
0.2071
0.1510
2.6193
132
2739
99.00
0.1659
0.1521
2.9982
145
2710
99.00
0.1694
0.1467
3.7771
122
2559
93.00
0.1777
0.1446
43.2991
167
2764
98.00
20.54
1.499
43.281
5K1P
44122
0.999
0.05
1
11.64
3.3
96
1.499
1.553
1.03
1
3.2
97
refinement
PHENIX
(dev_2341: ???)
data reduction
XDS
data scaling
XDS
N
Catalytic domain of polyspecific pyrrolysyl-tRNA synthetase mutant N346A/C348A in complex with AMPPNP
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
A
THR
191
A
THR
5
HELX_P
A
LEU
202
A
LEU
16
1
AA1
12
A
PRO
215
A
PRO
29
HELX_P
A
GLU
237
A
GLU
51
1
AA2
23
A
ASN
241
A
ASN
55
HELX_P
A
ARG
257
A
ARG
71
1
AA3
17
A
LEU
270
A
LEU
84
HELX_P
A
MET
276
A
MET
90
1
AA4
7
A
THR
282
A
THR
96
HELX_P
A
GLN
287
A
GLN
101
1
AA5
6
A
LEU
301
A
LEU
115
HELX_P
A
ASP
313
A
ASP
127
1
AA6
13
A
THR
355
A
THR
169
HELX_P
A
GLY
371
A
GLY
185
1
AA7
17
A
ILE
405
A
ILE
219
HELX_P
A
GLY
412
A
GLY
226
5
AA8
8
A
LEU
424
A
LEU
238
HELX_P
A
ASP
433
A
ASP
247
1
AA9
10
A
ASN
436
A
ASN
250
HELX_P
A
ALA
441
A
ALA
255
5
AB1
6
metalc
2.547
A
GLU
396
A
OE1
GLU
210
1_555
A
MG
502
C
MG
MG
1_555
metalc
2.477
A
GLU
396
A
OE2
GLU
210
1_555
A
MG
502
C
MG
MG
1_555
metalc
2.307
A
SER
399
A
OG
SER
213
1_555
A
MG
502
C
MG
MG
1_555
metalc
2.304
A
ANP
501
B
O1B
ANP
1_555
A
MG
502
C
MG
MG
1_555
metalc
2.510
A
ANP
501
B
O1A
ANP
1_555
A
MG
502
C
MG
MG
1_555
metalc
2.145
A
ANP
501
B
O2G
ANP
1_555
A
MG
503
D
MG
MG
1_555
metalc
2.185
A
ANP
501
B
O2B
ANP
1_555
A
MG
503
D
MG
MG
1_555
metalc
2.160
A
MG
502
C
MG
MG
1_555
A
HOH
642
E
O
HOH
1_555
metalc
2.127
A
MG
502
C
MG
MG
1_555
A
HOH
784
E
O
HOH
1_555
metalc
2.190
A
MG
503
D
MG
MG
1_555
A
HOH
670
E
O
HOH
1_555
metalc
2.185
A
MG
503
D
MG
MG
1_555
A
HOH
722
E
O
HOH
1_555
metalc
2.131
A
MG
503
D
MG
MG
1_555
A
HOH
725
E
O
HOH
1_555
LIGASE
protein engineering, aminoacyl-tRNA synthetase, noncanonical amino acids, LIGASE
A
ASP
318
A
ASP
132
1
A
PRO
319
A
PRO
133
-2.06
A
GLY
403
A
GLY
217
1
A
PRO
404
A
PRO
218
2.59
PYLS_METMA
UNP
1
188
Q8PWY1
PALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLEIKSPIL
IPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLNF
CQMGSGCTRENLESIITDFLNHLGIDFKIVGDSCMVYGDTLDVMHGDLELSSAVVGPIPLDREWGIDKPWIGAGFGLERL
LKVKHDFKNIKRAARSESYYNGISTNL
188
454
5K1P
188
454
Q8PWY1
A
1
2
268
1
initiating methionine
MET
187
5K1P
A
Q8PWY1
UNP
1
1
ASN
engineered mutation
ALA
346
5K1P
A
Q8PWY1
UNP
346
160
1
CYS
engineered mutation
ALA
348
5K1P
A
Q8PWY1
UNP
348
162
1
expression tag
HIS
455
5K1P
A
Q8PWY1
UNP
269
1
expression tag
HIS
456
5K1P
A
Q8PWY1
UNP
270
1
expression tag
HIS
457
5K1P
A
Q8PWY1
UNP
271
1
expression tag
HIS
458
5K1P
A
Q8PWY1
UNP
272
1
expression tag
HIS
459
5K1P
A
Q8PWY1
UNP
273
1
expression tag
HIS
460
5K1P
A
Q8PWY1
UNP
274
7
3
2
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
260
A
LEU
74
A
ILE
262
A
ILE
76
A
ILE
320
A
ILE
134
A
TYR
329
A
TYR
143
A
GLU
341
A
GLU
155
A
MET
350
A
MET
164
A
TRP
417
A
TRP
231
A
GLY
423
A
GLY
237
A
LEU
395
A
LEU
209
A
VAL
402
A
VAL
216
A
GLY
385
A
GLY
199
A
HIS
392
A
HIS
206
A
LYS
375
A
LYS
189
A
CYS
381
A
CYS
195
A
LEU
267
A
LEU
81
A
PRO
269
A
PRO
83
A
PHE
295
A
PHE
109
A
LEU
297
A
LEU
111
A
ARG
290
A
ARG
104
A
VAL
291
A
VAL
105
A
TYR
446
A
TYR
260
A
TYR
447
A
TYR
261
A
ILE
450
A
ILE
264
A
SER
451
A
SER
265
binding site for residue ANP A 501
A
ANP
501
Software
20
binding site for residue MG A 502
A
MG
502
Software
5
binding site for residue MG A 503
A
MG
503
Software
4
A
ARG
330
A
ARG
144
20
1_555
A
GLU
332
A
GLU
146
20
1_555
A
HIS
338
A
HIS
152
20
1_555
A
LEU
339
A
LEU
153
20
1_555
A
PHE
342
A
PHE
156
20
1_555
A
MET
344
A
MET
158
20
1_555
A
GLU
396
A
GLU
210
20
1_555
A
LEU
397
A
LEU
211
20
1_555
A
SER
398
A
SER
212
20
1_555
A
SER
399
A
SER
213
20
1_555
A
GLY
423
A
GLY
237
20
1_555
A
ARG
426
A
ARG
240
20
1_555
A
MG
502
C
MG
20
1_555
A
MG
503
D
MG
20
1_555
A
HOH
666
E
HOH
20
1_555
A
HOH
670
E
HOH
20
1_555
A
HOH
681
E
HOH
20
1_555
A
HOH
722
E
HOH
20
1_555
A
HOH
744
E
HOH
20
1_555
A
HOH
784
E
HOH
20
1_555
A
GLU
396
A
GLU
210
5
1_555
A
SER
399
A
SER
213
5
1_555
A
ANP
501
B
ANP
5
1_555
A
HOH
642
E
HOH
5
1_555
A
HOH
784
E
HOH
5
1_555
A
ANP
501
B
ANP
4
1_555
A
HOH
670
E
HOH
4
1_555
A
HOH
722
E
HOH
4
1_555
A
HOH
725
E
HOH
4
1_555
5
C 1 2 1