0.009618 0.000000 0.000000 0.000000 0.009618 0.000000 0.000000 0.000000 0.009618 0.00000 0.00000 0.00000 Stanley, M. Virdee, S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 24 90.00 90.00 90.00 103.975 103.975 103.975 C5 H12 N2 O3 148.160 5-(aminooxy)-L-norvaline L-peptide linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C2 H7 N O 61.083 ETHANOLAMINE L-peptide COOH carboxy terminus C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N C N 7 N C N 8 N O N 9 N N N 10 N H N 11 N H N 12 N H N 13 N H N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N O N 22 N H N 23 N N N 24 S C N 25 N C N 26 N O N 27 N C N 28 N O N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N N N 37 S C N 38 N C N 39 N O N 40 N C N 41 N C N 42 N C N 43 N N N 44 N C N 45 N N N 46 N N N 47 N O N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N N N 64 S C N 65 N C N 66 N O N 67 N C N 68 N C N 69 N O N 70 N N N 71 N O N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N N N 81 S C N 82 N C N 83 N O N 84 N C N 85 N C N 86 N O N 87 N O N 88 N O N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N C N 97 N N N 98 N C N 99 N O N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N N N 108 S C N 109 N C N 110 N O N 111 N C N 112 N C N 113 N C N 114 N O N 115 N N N 116 N O N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 S C N 129 N C N 130 N O N 131 N C N 132 N C N 133 N C N 134 N O N 135 N O N 136 N O N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N N N 147 N C N 148 N C N 149 N O N 150 N O N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N N N 157 S C N 158 N C N 159 N O N 160 N C Y 161 N C Y 162 N N Y 163 N C Y 164 N C Y 165 N N N 166 N O N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N N N 178 S C N 179 N C N 180 N O N 181 S C N 182 N C N 183 N C N 184 N C N 185 N O N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N N N 200 S C N 201 N C N 202 N O N 203 N C N 204 N C N 205 N C N 206 N C N 207 N O N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N N N 222 S C N 223 N C N 224 N O N 225 N C N 226 N C N 227 N C N 228 N C N 229 N N N 230 N O N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N N N 247 S C N 248 N C N 249 N O N 250 N C N 251 N C N 252 N S N 253 N C N 254 N O N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N N N 267 S C N 268 N C N 269 N O N 270 N C Y 271 N C Y 272 N C Y 273 N C Y 274 N C Y 275 N C Y 276 N C N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N N N 290 S C N 291 N C N 292 N O N 293 N C N 294 N C N 295 N C N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N N N 307 S C N 308 N C N 309 N O N 310 N C N 311 N O N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N N N 321 S C N 322 N C N 323 N O N 324 R C N 325 N O N 326 N C N 327 N O N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N N N 338 S C N 339 N C N 340 N O N 341 N C Y 342 N C Y 343 N C Y 344 N C Y 345 N C Y 346 N C Y 347 N C N 348 N O N 349 N O N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N N N 362 S C N 363 N C N 364 N O N 365 N C N 366 N C N 367 N C N 368 N O N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N ZN N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N doub N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N doub N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N doub N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N doub N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing Y 158 N sing Y 159 N doub Y 160 N doub N 161 N sing Y 162 N sing N 163 N sing Y 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N doub N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N doub N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N doub N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N doub N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing Y 264 N doub Y 265 N sing Y 266 N sing N 267 N sing Y 268 N doub N 269 N sing Y 270 N doub N 271 N sing Y 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing Y 333 N doub Y 334 N sing Y 335 N sing N 336 N sing Y 337 N doub N 338 N sing Y 339 N doub N 340 N sing Y 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N doub N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing GE Chembiochem 1439-7633 17 1472 1480 10.1002/cbic.201600138 27197715 Genetically Directed Production of Recombinant, Isosteric and Nonhydrolysable Ubiquitin Conjugates. 2016 10.2210/pdb5khy/pdb pdb_00005khy 19W A 6 HAS WRONG CHIRALITY AT ATOM CA 80 1 PIXEL 2016-01-27 DECTRIS PILATUS3 6M SINGLE WAVELENGTH M x-ray 1 0.979490 1.0 I02 Diamond 0.979490 SYNCHROTRON DIAMOND BEAMLINE I02 8306.497 Polyubiquitin-B Unnatural aminoxylysine amino acid at position 6 1 man polymer 8519.778 Polyubiquitin-B unnatural residue 76 oxime linked to chain A 1 man polymer 65.409 ZINC ION 10 syn non-polymer 61.083 ETHANOLAMINE unnatural residue 76 oxime linked to chain A 1 man non-polymer no yes MQIFV(19W)TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL MQIFVXTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL A polypeptide(L) no no MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 73 UBB 9606 Homo sapiens 2 Bacteria Biological sequence Human sample 1 75 UBB 9606 Homo sapiens 2 Bacteria Biological sequence sample UBB 9606 Homo sapiens 2 Bacteria 1 2.81 56.25 Cubic VAPOR DIFFUSION, HANGING DROP 7.5 PEG 3350, Zinc acetate 295 pdbx_audit_support pdbx_unobs_or_zero_occ_atoms pdbx_validate_close_contact pdbx_validate_symm_contact struct_conn reflns_shell atom_site atom_site_anisotrop chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle pdbx_unobs_or_zero_occ_atoms pdbx_validate_close_contact struct_conn repository Initial release Advisory Author supporting evidence Advisory Data collection Derived calculations Data collection Advisory Atomic model Data collection Database references Derived calculations 1 0 2016-09-14 1 1 2017-09-13 1 2 2018-11-21 1 3 2019-10-16 2 0 2023-11-15 _pdbx_audit_support.funding_organization _atom_site.auth_atom_id _atom_site.label_atom_id _atom_site_anisotrop.pdbx_auth_atom_id _atom_site_anisotrop.pdbx_label_atom_id _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _pdbx_validate_close_contact.auth_atom_id_2 _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_symmetry United Kingdom Medical Research Council (United Kingdom) MC_UU_12016/8 N RCSB Y PDBE 2016-06-16 REL REL ZN ZINC ION ETA ETHANOLAMINE ZN 2 3 ZN ZN 101 A ZN 4 3 ZN ZN 102 A ZN 5 3 ZN ZN 103 A ZN 6 3 ZN ZN 104 A ZN 8 3 ZN ZN 105 A ZN 9 3 ZN ZN 106 A ZN 1 3 ZN ZN 101 B ZN 3 3 ZN ZN 102 B ZN 7 3 ZN ZN 103 B ZN 10 3 ZN ZN 104 B IAL 76 4 ETA ETA 105 B MET 1 n 1 MET 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A PHE 4 n 4 PHE 4 A VAL 5 n 5 VAL 5 A KOX 6 n 6 19W 6 A THR 7 n 7 THR 7 A LEU 8 n 8 LEU 8 A THR 9 n 9 THR 9 A GLY 10 n 10 GLY 10 A LYS 11 n 11 LYS 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A THR 14 n 14 THR 14 A LEU 15 n 15 LEU 15 A GLU 16 n 16 GLU 16 A VAL 17 n 17 VAL 17 A GLU 18 n 18 GLU 18 A PRO 19 n 19 PRO 19 A SER 20 n 20 SER 20 A ASP 21 n 21 ASP 21 A THR 22 n 22 THR 22 A ILE 23 n 23 ILE 23 A GLU 24 n 24 GLU 24 A ASN 25 n 25 ASN 25 A VAL 26 n 26 VAL 26 A LYS 27 n 27 LYS 27 A ALA 28 n 28 ALA 28 A LYS 29 n 29 LYS 29 A ILE 30 n 30 ILE 30 A GLN 31 n 31 GLN 31 A ASP 32 n 32 ASP 32 A LYS 33 n 33 LYS 33 A GLU 34 n 34 GLU 34 A GLY 35 n 35 GLY 35 A ILE 36 n 36 ILE 36 A PRO 37 n 37 PRO 37 A PRO 38 n 38 PRO 38 A ASP 39 n 39 ASP 39 A GLN 40 n 40 GLN 40 A GLN 41 n 41 GLN 41 A ARG 42 n 42 ARG 42 A LEU 43 n 43 LEU 43 A ILE 44 n 44 ILE 44 A PHE 45 n 45 PHE 45 A ALA 46 n 46 ALA 46 A GLY 47 n 47 GLY 47 A LYS 48 n 48 LYS 48 A GLN 49 n 49 GLN 49 A LEU 50 n 50 LEU 50 A GLU 51 n 51 GLU 51 A ASP 52 n 52 ASP 52 A GLY 53 n 53 GLY 53 A ARG 54 n 54 ARG 54 A THR 55 n 55 THR 55 A LEU 56 n 56 LEU 56 A SER 57 n 57 SER 57 A ASP 58 n 58 ASP 58 A TYR 59 n 59 TYR 59 A ASN 60 n 60 ASN 60 A ILE 61 n 61 ILE 61 A GLN 62 n 62 GLN 62 A LYS 63 n 63 LYS 63 A GLU 64 n 64 GLU 64 A SER 65 n 65 SER 65 A THR 66 n 66 THR 66 A LEU 67 n 67 LEU 67 A HIS 68 n 68 HIS 68 A LEU 69 n 69 LEU 69 A VAL 70 n 70 VAL 70 A LEU 71 n 71 LEU 71 A ARG 72 n 72 ARG 72 A LEU 73 n 73 LEU 73 A MET 1 n 1 MET 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B PHE 4 n 4 PHE 4 B VAL 5 n 5 VAL 5 B LYS 6 n 6 LYS 6 B THR 7 n 7 THR 7 B LEU 8 n 8 LEU 8 B THR 9 n 9 THR 9 B GLY 10 n 10 GLY 10 B LYS 11 n 11 LYS 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B THR 14 n 14 THR 14 B LEU 15 n 15 LEU 15 B GLU 16 n 16 GLU 16 B VAL 17 n 17 VAL 17 B GLU 18 n 18 GLU 18 B PRO 19 n 19 PRO 19 B SER 20 n 20 SER 20 B ASP 21 n 21 ASP 21 B THR 22 n 22 THR 22 B ILE 23 n 23 ILE 23 B GLU 24 n 24 GLU 24 B ASN 25 n 25 ASN 25 B VAL 26 n 26 VAL 26 B LYS 27 n 27 LYS 27 B ALA 28 n 28 ALA 28 B LYS 29 n 29 LYS 29 B ILE 30 n 30 ILE 30 B GLN 31 n 31 GLN 31 B ASP 32 n 32 ASP 32 B LYS 33 n 33 LYS 33 B GLU 34 n 34 GLU 34 B GLY 35 n 35 GLY 35 B ILE 36 n 36 ILE 36 B PRO 37 n 37 PRO 37 B PRO 38 n 38 PRO 38 B ASP 39 n 39 ASP 39 B GLN 40 n 40 GLN 40 B GLN 41 n 41 GLN 41 B ARG 42 n 42 ARG 42 B LEU 43 n 43 LEU 43 B ILE 44 n 44 ILE 44 B PHE 45 n 45 PHE 45 B ALA 46 n 46 ALA 46 B GLY 47 n 47 GLY 47 B LYS 48 n 48 LYS 48 B GLN 49 n 49 GLN 49 B LEU 50 n 50 LEU 50 B GLU 51 n 51 GLU 51 B ASP 52 n 52 ASP 52 B GLY 53 n 53 GLY 53 B ARG 54 n 54 ARG 54 B THR 55 n 55 THR 55 B LEU 56 n 56 LEU 56 B SER 57 n 57 SER 57 B ASP 58 n 58 ASP 58 B TYR 59 n 59 TYR 59 B ASN 60 n 60 ASN 60 B ILE 61 n 61 ILE 61 B GLN 62 n 62 GLN 62 B LYS 63 n 63 LYS 63 B GLU 64 n 64 GLU 64 B SER 65 n 65 SER 65 B THR 66 n 66 THR 66 B LEU 67 n 67 LEU 67 B HIS 68 n 68 HIS 68 B LEU 69 n 69 LEU 69 B VAL 70 n 70 VAL 70 B LEU 71 n 71 LEU 71 B ARG 72 n 72 ARG 72 B LEU 73 n 73 LEU 73 B ARG 74 n 74 ARG 74 B GLY 75 n 75 GLY 75 B 5.3823 -0.8090 -1.1624 5.0049 3.4954 9.2297 -0.1377 -0.4622 1.1496 1.2128 0.2480 -0.9370 1.7186 1.0684 0.3515 1.2169 -0.0628 0.0266 0.8038 0.0151 0.9939 refined 14.5308 17.2410 -27.6922 X-RAY DIFFRACTION 2.1981 2.6881 0.8278 4.7225 -2.1207 7.1428 0.4959 -0.4306 -0.3424 0.2258 -0.1151 0.2131 -0.3476 2.0066 -0.0000 1.7669 0.1346 0.1661 1.3562 -0.0675 1.2470 refined 5.5071 -3.4482 -15.2228 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 (chain 'A' and resid 1 through 73) X-RAY DIFFRACTION 2 (chain 'B' and resid 1 through 76) software_defined_assembly PISA 2 dimeric 1660 -196 8280 B MET 1 B N MET 1 1_555 B ZN 101 I ZN ZN 9_555 B ASP 32 B OD2 ASP 32 1_555 84.7 A 19W 6 modified residue A 19W 6 LYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 13 A O ILE 13 A N VAL 5 A N VAL 5 A N PHE 4 A N PHE 4 A O LEU 67 A O LEU 67 A N PHE 45 A N PHE 45 A O LYS 48 A O LYS 48 B O LEU 15 B O LEU 15 B N ILE 3 B N ILE 3 B N PHE 4 B N PHE 4 B O LEU 67 B O LEU 67 B O VAL 70 B O VAL 70 B N ARG 42 B N ARG 42 B N PHE 45 B N PHE 45 B O LYS 48 B O LYS 48 1 A CG LEU 8 A CG LEU 8 1 Y 1 A CD1 LEU 8 A CD1 LEU 8 1 Y 1 A CD2 LEU 8 A CD2 LEU 8 1 Y 1 A OG1 THR 9 A OG1 THR 9 1 Y 1 A CG2 THR 9 A CG2 THR 9 1 Y 1 A CG LYS 11 A CG LYS 11 1 Y 1 A CD LYS 11 A CD LYS 11 1 Y 1 A CE LYS 11 A CE LYS 11 1 Y 1 A NZ LYS 11 A NZ LYS 11 1 Y 1 A CG ASP 21 A CG ASP 21 1 Y 1 A OD1 ASP 21 A OD1 ASP 21 1 Y 1 A OD2 ASP 21 A OD2 ASP 21 1 Y 1 A CG GLU 24 A CG GLU 24 1 Y 1 A CD GLU 24 A CD GLU 24 1 Y 1 A OE1 GLU 24 A OE1 GLU 24 1 Y 1 A OE2 GLU 24 A OE2 GLU 24 1 Y 1 A CG LYS 27 A CG LYS 27 1 Y 1 A CD LYS 27 A CD LYS 27 1 Y 1 A CE LYS 27 A CE LYS 27 1 Y 1 A NZ LYS 27 A NZ LYS 27 1 Y 1 A CG1 ILE 30 A CG1 ILE 30 1 Y 1 A CG2 ILE 30 A CG2 ILE 30 1 Y 1 A CD1 ILE 30 A CD1 ILE 30 1 Y 1 A CG LYS 33 A CG LYS 33 1 Y 1 A CD LYS 33 A CD LYS 33 1 Y 1 A CE LYS 33 A CE LYS 33 1 Y 1 A NZ LYS 33 A NZ LYS 33 1 Y 1 A CG LYS 48 A CG LYS 48 1 Y 1 A CD LYS 48 A CD LYS 48 1 Y 1 A CE LYS 48 A CE LYS 48 1 Y 1 A NZ LYS 48 A NZ LYS 48 1 Y 1 A CG GLU 51 A CG GLU 51 1 Y 1 A CD GLU 51 A CD GLU 51 1 Y 1 A OE1 GLU 51 A OE1 GLU 51 1 Y 1 A OE2 GLU 51 A OE2 GLU 51 1 Y 1 A CG ARG 54 A CG ARG 54 1 Y 1 A CD ARG 54 A CD ARG 54 1 Y 1 A NE ARG 54 A NE ARG 54 1 Y 1 A CZ ARG 54 A CZ ARG 54 1 Y 1 A NH1 ARG 54 A NH1 ARG 54 1 Y 1 A NH2 ARG 54 A NH2 ARG 54 1 Y 1 A CG LEU 56 A CG LEU 56 1 Y 1 A CD1 LEU 56 A CD1 LEU 56 1 Y 1 A CD2 LEU 56 A CD2 LEU 56 1 Y 1 A CG LYS 63 A CG LYS 63 1 Y 1 A CD LYS 63 A CD LYS 63 1 Y 1 A CE LYS 63 A CE LYS 63 1 Y 1 A NZ LYS 63 A NZ LYS 63 1 Y 1 A CG LEU 69 A CG LEU 69 1 Y 1 A CD1 LEU 69 A CD1 LEU 69 1 Y 1 A CD2 LEU 69 A CD2 LEU 69 1 Y 1 A CG LEU 71 A CG LEU 71 1 Y 1 A CD1 LEU 71 A CD1 LEU 71 1 Y 1 A CD2 LEU 71 A CD2 LEU 71 1 Y 1 A CG ARG 72 A CG ARG 72 1 Y 1 A CD ARG 72 A CD ARG 72 1 Y 1 A NE ARG 72 A NE ARG 72 1 Y 1 A CZ ARG 72 A CZ ARG 72 1 Y 1 A NH1 ARG 72 A NH1 ARG 72 1 Y 1 A NH2 ARG 72 A NH2 ARG 72 1 Y 1 A CG LEU 73 A CG LEU 73 1 Y 1 A CD1 LEU 73 A CD1 LEU 73 1 Y 1 A CD2 LEU 73 A CD2 LEU 73 1 Y 1 B CG LYS 6 B CG LYS 6 1 Y 1 B CD LYS 6 B CD LYS 6 1 Y 1 B CE LYS 6 B CE LYS 6 1 Y 1 B NZ LYS 6 B NZ LYS 6 1 Y 1 B CG LYS 11 B CG LYS 11 1 Y 1 B CD LYS 11 B CD LYS 11 1 Y 1 B CE LYS 11 B CE LYS 11 1 Y 1 B NZ LYS 11 B NZ LYS 11 1 Y 1 B CG LYS 33 B CG LYS 33 1 Y 1 B CD LYS 33 B CD LYS 33 1 Y 1 B CE LYS 33 B CE LYS 33 1 Y 1 B NZ LYS 33 B NZ LYS 33 1 Y 1 B CA ILE 36 B B CA ILE 36 0 Y 1 B CB ILE 36 B B CB ILE 36 0 Y 1 B CG1 ILE 36 B B CG1 ILE 36 0 Y 1 B CG2 ILE 36 B B CG2 ILE 36 0 Y 1 B CD1 ILE 36 B B CD1 ILE 36 0 Y 1 B CG LYS 48 B CG LYS 48 1 Y 1 B CD LYS 48 B CD LYS 48 1 Y 1 B CE LYS 48 B CE LYS 48 1 Y 1 B NZ LYS 48 B NZ LYS 48 1 Y 1 B CG GLU 51 B CG GLU 51 1 Y 1 B CD GLU 51 B CD GLU 51 1 Y 1 B OE1 GLU 51 B OE1 GLU 51 1 Y 1 B OE2 GLU 51 B OE2 GLU 51 1 Y 1 B CG ASP 52 B CG ASP 52 1 Y 1 B OD1 ASP 52 B OD1 ASP 52 1 Y 1 B OD2 ASP 52 B OD2 ASP 52 1 Y 1 B CG ARG 54 B CG ARG 54 1 Y 1 B CD ARG 54 B CD ARG 54 1 Y 1 B NE ARG 54 B NE ARG 54 1 Y 1 B CZ ARG 54 B CZ ARG 54 1 Y 1 B NH1 ARG 54 B NH1 ARG 54 1 Y 1 B NH2 ARG 54 B NH2 ARG 54 1 Y 1 B CG LEU 73 B CG LEU 73 1 Y 1 B CD1 LEU 73 B CD1 LEU 73 1 Y 1 B CD2 LEU 73 B CD2 LEU 73 1 Y 1 B CG ARG 74 B CG ARG 74 1 Y 1 B CD ARG 74 B CD ARG 74 1 Y 1 B NE ARG 74 B NE ARG 74 1 Y 1 B CZ ARG 74 B CZ ARG 74 1 Y 1 B NH1 ARG 74 B NH1 ARG 74 1 Y 1 B NH2 ARG 74 B NH2 ARG 74 1 Y 1 B O ETA 105 M O ETA 1 1 N 1 A CA 19W 6 PLANAR 1 A A CD2 CB LEU LEU 43 69 0.61 1 A A OE1 ZN GLU ZN 18 102 0.93 1 B B CD NE2 ARG GLN 42 49 1.22 1 A A N ZN MET ZN 1 103 1.54 1 B B CG NE2 ARG GLN 42 49 1.63 1 A A O O 19W HIS 6 68 1.65 1 A A CE2 CD1 PHE ILE 45 61 1.74 1 A A N O 19W HIS 6 68 1.78 1 A A O CG2 19W VAL 6 70 1.87 1 A A O O ILE LEU 44 69 1.88 1 A A CG CB LEU LEU 43 69 1.89 1 A B NZ C 19W ETA 6 105 1.90 1 A A CD2 CA LEU LEU 43 69 2.00 1 A A CD2 CD1 PHE ILE 45 61 2.01 1 B B OE2 CB GLU ASP 24 52 2.05 1 B B NH1 CG ARG ARG 42 72 2.05 1 A A CA O 19W HIS 6 68 2.06 1 A A O N GLN LEU 40 73 2.09 1 A A C O 19W HIS 6 68 2.14 1 A A CA CB GLN ARG 41 72 2.16 1 A A O CB 19W VAL 6 70 2.18 1 -3.09 0.50 120.30 117.21 B B B NE CZ NH1 ARG ARG ARG 72 72 72 N 1 A A CD OE1 GLU GLU 18 18 -0.106 0.011 1.252 1.146 N 1 A A CD OE2 GLU GLU 18 18 -0.096 0.011 1.252 1.156 N 1 B B NE CZ ARG ARG 72 72 -0.100 0.013 1.326 1.226 N 1 B B CZ NH1 ARG ARG 72 72 -0.112 0.013 1.326 1.214 N 1 A A OE2 CE1 GLU HIS 64 68 0.29 1_555 14_554 1 B B OE2 NE2 GLU HIS 64 68 0.69 1_555 13_544 1 A A OD2 ZN ASP ZN 32 103 1.01 1_555 6_555 1 B B CG ND2 ASN ASN 60 60 1.02 1_555 13_544 1 A A OE2 ND1 GLU HIS 64 68 1.07 1_555 14_554 1 B B OD1 ND2 ASN ASN 60 60 1.07 1_555 13_544 1 A A CD CE1 GLU HIS 64 68 1.10 1_555 14_554 1 A B OE1 NH2 GLU ARG 34 72 1.14 1_555 23_454 1 B B ND2 ND2 ASN ASN 60 60 1.35 1_555 13_544 1 A A CG OD1 PRO ASN 19 25 1.39 1_555 12_554 1 B B NE2 NZ GLN LYS 31 63 1.40 1_555 5_555 1 A A OE1 NE2 GLU HIS 64 68 1.48 1_555 14_554 1 A A OE2 NE2 GLU HIS 64 68 1.49 1_555 14_554 1 A A N OD2 MET ASP 1 32 1.49 1_555 12_554 1 B B CD NZ GLN LYS 31 63 1.55 1_555 5_555 1 A A OE1 ZN GLU ZN 64 101 1.61 1_555 14_554 1 A A CD NE2 GLU HIS 64 68 1.63 1_555 14_554 1 B B CD CE GLN LYS 31 63 1.65 1_555 5_555 1 B B OE2 CD2 GLU HIS 64 68 1.73 1_555 13_544 1 A A CD OD1 PRO ASN 19 25 1.74 1_555 12_554 1 B B OE1 CE GLN LYS 31 63 1.79 1_555 5_555 1 A A N OD1 MET ASP 1 32 1.86 1_555 12_554 1 A A N CG MET ASP 1 32 1.88 1_555 12_554 1 B B CG CG ASN ASN 60 60 1.91 1_555 13_544 1 B B OE2 CE1 GLU HIS 64 68 1.91 1_555 13_544 1 B B CD NE2 GLU HIS 64 68 1.91 1_555 13_544 1 A A OE1 CE1 GLU HIS 64 68 1.92 1_555 14_554 1 A B CD NH2 GLU ARG 34 72 1.97 1_555 23_454 1 B B CG NZ GLN LYS 31 63 2.01 1_555 5_555 1 A A OE2 CG GLU HIS 64 68 2.06 1_555 14_554 1 B B NE2 CE GLN LYS 31 63 2.14 1_555 5_555 1 A THR 7 -99.11 -152.89 1 A VAL 17 79.23 150.22 1 A ASP 39 -66.14 5.70 1 A GLU 64 80.31 -0.82 1 A LEU 71 74.81 -171.79 1 A ARG 72 166.24 -166.41 1 B GLU 34 -144.46 30.37 1 B ASP 39 -51.87 6.13 1 B ALA 46 31.24 50.85 1 B GLN 62 -124.20 -164.29 1 B GLU 64 56.09 13.23 0.3314 0.2823 0.2947 3.501 27.79 691 2689 25.69 99.67 0.65 1 FREE R-VALUE 1.34 MOLECULAR REPLACEMENT 37.76 0.90 1.11 3.501 27.79 0 1091 10 0 1081 0.022 1099 1.944 1496 18.861 669 0.129 187 0.007 197 0.4978 0.3686 3.7708 118 402 100.00 0.3864 0.3679 4.1493 126 392 100.00 0.3346 0.2734 4.7474 142 388 100.00 0.3185 0.2746 5.9724 157 373 99.00 0.3011 0.2573 28.8384 148 444 99.00 3.5 30 5KHY 2689 1 6.77 2.0 99 refinement PHENIX (1.10.1_2155: ???) data reduction XDS data scaling Aimless phasing PHASER Crystal structure of oxime-linked K6 diubiquitin 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 3 N N 4 N N A THR 22 A THR 22 HELX_P A GLY 35 A GLY 35 1 AA1 14 A PRO 37 A PRO 37 HELX_P A GLN 41 A GLN 41 5 AA2 5 A LEU 56 A LEU 56 HELX_P A ASN 60 A ASN 60 5 AA3 5 B THR 22 B THR 22 HELX_P B GLY 35 B GLY 35 1 AA4 14 B PRO 37 B PRO 37 HELX_P B ASP 39 B ASP 39 5 AA5 3 B LEU 56 B LEU 56 HELX_P B ASN 60 B ASN 60 5 AA6 5 covale 1.338 both A VAL 5 A C VAL 5 1_555 A 19W 6 A N 19W 6 1_555 covale 1.346 both A 19W 6 A C 19W 6 1_555 A THR 7 A N THR 7 1_555 covale 1.327 both B GLY 75 B C GLY 75 1_555 B ETA 105 M N ETA 1_555 metalc 2.284 A GLU 18 A OE2 GLU 18 1_555 A ZN 102 D ZN ZN 1_555 metalc 2.148 A ASP 39 A OD2 ASP 39 1_555 A ZN 106 H ZN ZN 1_555 metalc 2.232 A ASP 52 A OD2 ASP 52 1_555 A ZN 105 G ZN ZN 1_555 metalc 2.458 A ASP 58 A OD2 ASP 58 1_555 A ZN 104 F ZN ZN 1_555 metalc 1.848 A HIS 68 A NE2 HIS 68 1_555 A ZN 101 C ZN ZN 1_555 metalc 2.264 B MET 1 B N MET 1 1_555 B ZN 101 I ZN ZN 9_555 metalc 2.251 B GLU 18 B OE2 GLU 18 1_555 B ZN 102 J ZN ZN 1_555 metalc 2.197 B GLU 24 B OE1 GLU 24 1_555 B ZN 104 L ZN ZN 1_555 metalc 2.475 B ASP 32 B OD2 ASP 32 1_555 B ZN 101 I ZN ZN 1_555 SIGNALING PROTEIN Ubiquitin, oxime, signaling protein A HIS 68 A HIS 68 1 A LEU 69 A LEU 69 -9.83 A LEU 69 A LEU 69 1 A VAL 70 A VAL 70 -3.10 UBB_HUMAN UNP 1 1 P0CG47 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL UBB_HUMAN UNP 2 1 P0CG47 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 1 73 5KHY 1 73 P0CG47 A 1 1 73 1 75 5KHY 1 75 P0CG47 B 2 1 75 3 2 5 anti-parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A THR 12 A THR 12 A LEU 15 A LEU 15 A ILE 3 A ILE 3 A 19W 6 A 19W 6 A THR 66 A THR 66 A LEU 67 A LEU 67 A LEU 43 A LEU 43 A PHE 45 A PHE 45 A LYS 48 A LYS 48 A LEU 50 A LEU 50 B THR 12 B THR 12 B GLU 16 B GLU 16 B GLN 2 B GLN 2 B LYS 6 B LYS 6 B THR 66 B THR 66 B LEU 71 B LEU 71 B GLN 41 B GLN 41 B PHE 45 B PHE 45 B LYS 48 B LYS 48 B GLN 49 B GLN 49 binding site for residue ZN A 101 A ZN 101 Software 2 binding site for residue ZN A 102 A ZN 102 Software 2 binding site for residue ZN A 103 A ZN 103 Software 2 binding site for residue ZN A 104 A ZN 104 Software 1 binding site for residue ZN A 105 A ZN 105 Software 1 binding site for residue ZN A 106 A ZN 106 Software 1 binding site for residue ZN B 101 B ZN 101 Software 3 binding site for residue ZN B 102 B ZN 102 Software 4 binding site for residue ZN B 103 B ZN 103 Software 1 binding site for residue ZN B 104 B ZN 104 Software 2 binding site for residue ETA B 105 B ETA 105 Software 3 A GLU 64 A GLU 64 2 14_554 A HIS 68 A HIS 68 2 1_555 A GLU 18 A GLU 18 2 1_555 A GLU 18 A GLU 18 2 6_555 A MET 1 A MET 1 2 1_555 A ASP 32 A ASP 32 2 12_554 A ASP 58 A ASP 58 1 1_555 A ASP 52 A ASP 52 1 1_555 A ASP 39 A ASP 39 1 1_555 B MET 1 B MET 1 3 5_555 B GLU 16 B GLU 16 3 5_555 B ASP 32 B ASP 32 3 1_555 B GLU 18 B GLU 18 4 9_555 B GLU 18 B GLU 18 4 1_555 B ASP 21 B ASP 21 4 9_555 B LYS 29 B LYS 29 4 9_555 B ASP 58 B ASP 58 1 1_555 B GLU 24 B GLU 24 2 1_555 B LYS 27 B LYS 27 2 1_555 A GLN 2 A GLN 2 3 14_554 A 19W 6 A 19W 6 3 1_555 B GLY 75 B GLY 75 3 1_555 212 P 43 3 2