0.021758 0.000000 0.000000 0.000000 0.017117 0.000000 0.000000 0.000000 0.011643 0.00000 0.00000 0.00000 Liu, Z. Poole, K.M. Mahon, B.P. McKenna, R. Fanucci, G.E. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 45.960 58.420 85.890 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C38 H50 N6 O5 670.841 (2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide Fortovase; SAQUINAVIR; RO 31-8959 peptide-like C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C4 H9 N O2 103.120 UNKNOWN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 S C N 252 N C N 253 N O N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N C N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N C N 291 N O Y 292 N N Y 293 N C Y 294 N C Y 295 N C Y 296 N C Y 297 N C Y 298 N C Y 299 N C Y 300 N C Y 301 N C N 302 N N N 303 S C N 304 N C N 305 N O N 306 N C N 307 N C N 308 N O N 309 N N N 310 R C N 311 N O N 312 S C N 313 N N N 314 N C Y 315 N C Y 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C N 321 N N N 322 N C N 323 S C N 324 N C N 325 N O N 326 N C N 327 S C N 328 N C N 329 N C N 330 N C N 331 N C N 332 S C N 333 N C N 334 N N N 335 N C N 336 N C N 337 N C N 338 N C N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N N N 390 S C N 391 N C N 392 N O N 393 N C N 394 N O N 395 N O N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N N N 404 S C N 405 N C N 406 N O N 407 R C N 408 N O N 409 N C N 410 N O N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N N N 421 S C N 422 N C N 423 N O N 424 N C Y 425 N C Y 426 N C Y 427 N C Y 428 N N Y 429 N C Y 430 N C Y 431 N C Y 432 N C Y 433 N C N 434 N O N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N N N 448 S C N 449 N C N 450 N O N 451 N C Y 452 N C Y 453 N C Y 454 N C Y 455 N C Y 456 N C Y 457 N C N 458 N O N 459 N O N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N N N 472 S C N 473 N C N 474 N O N 475 N C N 476 N C N 477 N C N 478 N O N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N doub N 278 N sing Y 279 N doub Y 280 N sing Y 281 N sing Y 282 N doub N 283 N sing Y 284 N sing N 285 N sing Y 286 N doub Y 287 N sing Y 288 N sing N 289 N sing Y 290 N doub N 291 N sing Y 292 N sing N 293 N sing Y 294 N doub N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N doub N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing Y 320 N doub Y 321 N sing Y 322 N sing N 323 N sing Y 324 N doub N 325 N sing Y 326 N doub N 327 N sing Y 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N doub N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N doub N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing Y 420 N doub Y 421 N sing Y 422 N sing N 423 N sing Y 424 N doub Y 425 N sing Y 426 N sing N 427 N sing Y 428 N sing Y 429 N doub N 430 N sing Y 431 N doub N 432 N sing Y 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N doub N 444 N sing N 445 N sing N 446 N sing N 447 N sing Y 448 N doub Y 449 N sing Y 450 N sing N 451 N sing Y 452 N doub N 453 N sing Y 454 N doub N 455 N sing Y 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N doub N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing US J.Biol.Chem. JBCHA3 0071 1083-351X 291 22741 22756 10.1074/jbc.M116.747568 27576689 Effects of Hinge-region Natural Polymorphisms on Human Immunodeficiency Virus-Type 1 Protease Structure, Dynamics, and Drug Pressure Evolution. 2016 10.2210/pdb5kqx/pdb pdb_00005kqx 100 1 IMAGE PLATE 2014-10-30 RIGAKU SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU RUH3R 10725.665 Protease E35D-SQV 2 man polymer 670.841 (2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide 1 man non-polymer 18.015 water 160 nat water no no PQITLWKRPLVTIKIGGQLKEALLNTGADDTVIEDMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT PVNIIGRNLLTQIGATLNF PQITLWKRPLVTIKIGGQLKEALLNTGADDTVIEDMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT PVNIIGRNLLTQIGATLNF A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 99 pol 11676 Human immunodeficiency virus 1 83333 Escherichia coli K-12 Biological sequence 1 2.61 52.80 VAPOR DIFFUSION, HANGING DROP sodium chloride 300 citation pdbx_audit_support pdbx_struct_oper_list pdbx_audit_support chem_comp chem_comp_atom chem_comp_bond database_2 entity pdbx_entity_nonpoly repository Initial release Database references Author supporting evidence Database references Derived calculations Author supporting evidence Data collection Database references Derived calculations Structure summary 1 0 2016-09-21 1 1 2016-11-16 1 2 2017-09-20 1 3 2019-12-04 1 4 2024-03-06 _citation.journal_id_CSD _pdbx_audit_support.funding_organization _pdbx_audit_support.grant_number _pdbx_struct_oper_list.symmetry_operation _pdbx_audit_support.funding_organization _chem_comp.name _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _entity.pdbx_description _pdbx_entity_nonpoly.name United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM105409 United States National Institutes of Health/National Center for Research Resources (NIH/NCRR) S10RR031603 United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) R37 AI28571 N RCSB Y RCSB 2016-07-06 REL REL ROC (2S)-N-[(2S,3R)-4-[(2S,3S,4aS,8aS)-3-(tert-butylcarbamoyl)-3,4,4a,5,6,7,8,8a-octahydro-1H-isoquinolin-2-yl]-3-hydroxy-1 -phenyl-butan-2-yl]-2-(quinolin-2-ylcarbonylamino)butanediamide HOH water Inhibitor Saquinavir Peptide-like ROC 1 2 ROC ROC 101 A HOH 100 3 HOH HOH 201 A HOH 54 3 HOH HOH 202 A HOH 84 3 HOH HOH 203 A HOH 25 3 HOH HOH 204 A HOH 33 3 HOH HOH 205 A HOH 125 3 HOH HOH 206 A HOH 52 3 HOH HOH 207 A HOH 148 3 HOH HOH 208 A HOH 108 3 HOH HOH 209 A HOH 45 3 HOH HOH 210 A HOH 140 3 HOH HOH 211 A HOH 118 3 HOH HOH 212 A HOH 80 3 HOH HOH 213 A HOH 20 3 HOH HOH 214 A HOH 22 3 HOH HOH 215 A HOH 60 3 HOH HOH 216 A HOH 40 3 HOH HOH 217 A HOH 16 3 HOH HOH 218 A HOH 17 3 HOH HOH 219 A HOH 5 3 HOH HOH 220 A HOH 7 3 HOH HOH 221 A HOH 53 3 HOH HOH 222 A HOH 141 3 HOH HOH 223 A HOH 72 3 HOH HOH 224 A HOH 8 3 HOH HOH 225 A HOH 10 3 HOH HOH 226 A HOH 150 3 HOH HOH 227 A HOH 131 3 HOH HOH 228 A HOH 113 3 HOH HOH 229 A HOH 121 3 HOH HOH 230 A HOH 28 3 HOH HOH 231 A HOH 38 3 HOH HOH 232 A HOH 23 3 HOH HOH 233 A HOH 42 3 HOH HOH 234 A HOH 46 3 HOH HOH 235 A HOH 122 3 HOH HOH 236 A HOH 43 3 HOH HOH 237 A HOH 90 3 HOH HOH 238 A HOH 34 3 HOH HOH 239 A HOH 49 3 HOH HOH 240 A HOH 103 3 HOH HOH 241 A HOH 57 3 HOH HOH 242 A HOH 94 3 HOH HOH 243 A HOH 115 3 HOH HOH 244 A HOH 98 3 HOH HOH 245 A HOH 12 3 HOH HOH 246 A HOH 19 3 HOH HOH 247 A HOH 107 3 HOH HOH 248 A HOH 58 3 HOH HOH 249 A HOH 137 3 HOH HOH 250 A HOH 153 3 HOH HOH 251 A HOH 61 3 HOH HOH 252 A HOH 144 3 HOH HOH 253 A HOH 62 3 HOH HOH 254 A HOH 97 3 HOH HOH 255 A HOH 71 3 HOH HOH 256 A HOH 66 3 HOH HOH 257 A HOH 44 3 HOH HOH 258 A HOH 164 3 HOH HOH 259 A HOH 110 3 HOH HOH 260 A HOH 96 3 HOH HOH 261 A HOH 6 3 HOH HOH 262 A HOH 9 3 HOH HOH 263 A HOH 79 3 HOH HOH 264 A HOH 160 3 HOH HOH 265 A HOH 65 3 HOH HOH 266 A HOH 3 3 HOH HOH 267 A HOH 2 3 HOH HOH 268 A HOH 132 3 HOH HOH 269 A HOH 109 3 HOH HOH 270 A HOH 93 3 HOH HOH 271 A HOH 146 3 HOH HOH 272 A HOH 74 3 HOH HOH 273 A HOH 85 3 HOH HOH 274 A HOH 86 3 HOH HOH 275 A HOH 124 3 HOH HOH 276 A HOH 152 3 HOH HOH 277 A HOH 158 3 HOH HOH 278 A HOH 91 3 HOH HOH 279 A HOH 138 3 HOH HOH 280 A HOH 134 3 HOH HOH 281 A HOH 151 3 HOH HOH 282 A HOH 130 3 HOH HOH 283 A HOH 69 3 HOH HOH 284 A HOH 51 3 HOH HOH 285 A HOH 128 3 HOH HOH 286 A HOH 119 3 HOH HOH 287 A HOH 55 3 HOH HOH 288 A HOH 120 3 HOH HOH 289 A HOH 147 3 HOH HOH 101 B HOH 47 3 HOH HOH 102 B HOH 123 3 HOH HOH 103 B HOH 32 3 HOH HOH 104 B HOH 156 3 HOH HOH 105 B HOH 102 3 HOH HOH 106 B HOH 11 3 HOH HOH 107 B HOH 83 3 HOH HOH 108 B HOH 117 3 HOH HOH 109 B HOH 4 3 HOH HOH 110 B HOH 149 3 HOH HOH 111 B HOH 59 3 HOH HOH 112 B HOH 75 3 HOH HOH 113 B HOH 67 3 HOH HOH 114 B HOH 29 3 HOH HOH 115 B HOH 48 3 HOH HOH 116 B HOH 99 3 HOH HOH 117 B HOH 162 3 HOH HOH 118 B HOH 89 3 HOH HOH 119 B HOH 37 3 HOH HOH 120 B HOH 87 3 HOH HOH 121 B HOH 129 3 HOH HOH 122 B HOH 36 3 HOH HOH 123 B HOH 143 3 HOH HOH 124 B HOH 163 3 HOH HOH 125 B HOH 126 3 HOH HOH 126 B HOH 68 3 HOH HOH 127 B HOH 88 3 HOH HOH 128 B HOH 21 3 HOH HOH 129 B HOH 30 3 HOH HOH 130 B HOH 63 3 HOH HOH 131 B HOH 142 3 HOH HOH 132 B HOH 27 3 HOH HOH 133 B HOH 78 3 HOH HOH 134 B HOH 39 3 HOH HOH 135 B HOH 159 3 HOH HOH 136 B HOH 18 3 HOH HOH 137 B HOH 106 3 HOH HOH 138 B HOH 35 3 HOH HOH 139 B HOH 76 3 HOH HOH 140 B HOH 1 3 HOH HOH 141 B HOH 112 3 HOH HOH 142 B HOH 77 3 HOH HOH 143 B HOH 114 3 HOH HOH 144 B HOH 70 3 HOH HOH 145 B HOH 56 3 HOH HOH 146 B HOH 14 3 HOH HOH 147 B HOH 15 3 HOH HOH 148 B HOH 161 3 HOH HOH 149 B HOH 31 3 HOH HOH 150 B HOH 26 3 HOH HOH 151 B HOH 111 3 HOH HOH 152 B HOH 41 3 HOH HOH 153 B HOH 13 3 HOH HOH 154 B HOH 105 3 HOH HOH 155 B HOH 64 3 HOH HOH 156 B HOH 24 3 HOH HOH 157 B HOH 157 3 HOH HOH 158 B HOH 50 3 HOH HOH 159 B HOH 165 3 HOH HOH 160 B HOH 116 3 HOH HOH 161 B HOH 73 3 HOH HOH 162 B HOH 92 3 HOH HOH 163 B HOH 145 3 HOH HOH 164 B HOH 135 3 HOH HOH 165 B HOH 95 3 HOH HOH 166 B HOH 155 3 HOH HOH 167 B HOH 82 3 HOH HOH 168 B HOH 101 3 HOH HOH 169 B HOH 127 3 HOH HOH 170 B HOH 81 3 HOH HOH 171 B PRO 1 n 1 PRO 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A THR 4 n 4 THR 4 A LEU 5 n 5 LEU 5 A TRP 6 n 6 TRP 6 A LYS 7 n 7 LYS 7 A ARG 8 n 8 ARG 8 A PRO 9 n 9 PRO 9 A LEU 10 n 10 LEU 10 A VAL 11 n 11 VAL 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A LYS 14 n 14 LYS 14 A ILE 15 n 15 ILE 15 A GLY 16 n 16 GLY 16 A GLY 17 n 17 GLY 17 A GLN 18 n 18 GLN 18 A LEU 19 n 19 LEU 19 A LYS 20 n 20 LYS 20 A GLU 21 n 21 GLU 21 A ALA 22 n 22 ALA 22 A LEU 23 n 23 LEU 23 A LEU 24 n 24 LEU 24 A ASN 25 n 25 ASN 25 A THR 26 n 26 THR 26 A GLY 27 n 27 GLY 27 A ALA 28 n 28 ALA 28 A ASP 29 n 29 ASP 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A VAL 32 n 32 VAL 32 A ILE 33 n 33 ILE 33 A GLU 34 n 34 GLU 34 A ASP 35 n 35 ASP 35 A MET 36 n 36 MET 36 A SER 37 n 37 SER 37 A LEU 38 n 38 LEU 38 A PRO 39 n 39 PRO 39 A GLY 40 n 40 GLY 40 A ARG 41 n 41 ARG 41 A TRP 42 n 42 TRP 42 A LYS 43 n 43 LYS 43 A PRO 44 n 44 PRO 44 A LYS 45 n 45 LYS 45 A MET 46 n 46 MET 46 A ILE 47 n 47 ILE 47 A GLY 48 n 48 GLY 48 A GLY 49 n 49 GLY 49 A ILE 50 n 50 ILE 50 A GLY 51 n 51 GLY 51 A GLY 52 n 52 GLY 52 A PHE 53 n 53 PHE 53 A ILE 54 n 54 ILE 54 A LYS 55 n 55 LYS 55 A VAL 56 n 56 VAL 56 A ARG 57 n 57 ARG 57 A GLN 58 n 58 GLN 58 A TYR 59 n 59 TYR 59 A ASP 60 n 60 ASP 60 A GLN 61 n 61 GLN 61 A ILE 62 n 62 ILE 62 A ILE 63 n 63 ILE 63 A ILE 64 n 64 ILE 64 A GLU 65 n 65 GLU 65 A ILE 66 n 66 ILE 66 A ALA 67 n 67 ALA 67 A GLY 68 n 68 GLY 68 A HIS 69 n 69 HIS 69 A LYS 70 n 70 LYS 70 A ALA 71 n 71 ALA 71 A ILE 72 n 72 ILE 72 A GLY 73 n 73 GLY 73 A THR 74 n 74 THR 74 A VAL 75 n 75 VAL 75 A LEU 76 n 76 LEU 76 A VAL 77 n 77 VAL 77 A GLY 78 n 78 GLY 78 A PRO 79 n 79 PRO 79 A THR 80 n 80 THR 80 A PRO 81 n 81 PRO 81 A VAL 82 n 82 VAL 82 A ASN 83 n 83 ASN 83 A ILE 84 n 84 ILE 84 A ILE 85 n 85 ILE 85 A GLY 86 n 86 GLY 86 A ARG 87 n 87 ARG 87 A ASN 88 n 88 ASN 88 A LEU 89 n 89 LEU 89 A LEU 90 n 90 LEU 90 A THR 91 n 91 THR 91 A GLN 92 n 92 GLN 92 A ILE 93 n 93 ILE 93 A GLY 94 n 94 GLY 94 A ALA 95 n 95 ALA 95 A THR 96 n 96 THR 96 A LEU 97 n 97 LEU 97 A ASN 98 n 98 ASN 98 A PHE 99 n 99 PHE 99 A PRO 1 n 1 PRO 1 B GLN 2 n 2 GLN 2 B ILE 3 n 3 ILE 3 B THR 4 n 4 THR 4 B LEU 5 n 5 LEU 5 B TRP 6 n 6 TRP 6 B LYS 7 n 7 LYS 7 B ARG 8 n 8 ARG 8 B PRO 9 n 9 PRO 9 B LEU 10 n 10 LEU 10 B VAL 11 n 11 VAL 11 B THR 12 n 12 THR 12 B ILE 13 n 13 ILE 13 B LYS 14 n 14 LYS 14 B ILE 15 n 15 ILE 15 B GLY 16 n 16 GLY 16 B GLY 17 n 17 GLY 17 B GLN 18 n 18 GLN 18 B LEU 19 n 19 LEU 19 B LYS 20 n 20 LYS 20 B GLU 21 n 21 GLU 21 B ALA 22 n 22 ALA 22 B LEU 23 n 23 LEU 23 B LEU 24 n 24 LEU 24 B ASN 25 n 25 ASN 25 B THR 26 n 26 THR 26 B GLY 27 n 27 GLY 27 B ALA 28 n 28 ALA 28 B ASP 29 n 29 ASP 29 B ASP 30 n 30 ASP 30 B THR 31 n 31 THR 31 B VAL 32 n 32 VAL 32 B ILE 33 n 33 ILE 33 B GLU 34 n 34 GLU 34 B ASP 35 n 35 ASP 35 B MET 36 n 36 MET 36 B SER 37 n 37 SER 37 B LEU 38 n 38 LEU 38 B PRO 39 n 39 PRO 39 B GLY 40 n 40 GLY 40 B ARG 41 n 41 ARG 41 B TRP 42 n 42 TRP 42 B LYS 43 n 43 LYS 43 B PRO 44 n 44 PRO 44 B LYS 45 n 45 LYS 45 B MET 46 n 46 MET 46 B ILE 47 n 47 ILE 47 B GLY 48 n 48 GLY 48 B GLY 49 n 49 GLY 49 B ILE 50 n 50 ILE 50 B GLY 51 n 51 GLY 51 B GLY 52 n 52 GLY 52 B PHE 53 n 53 PHE 53 B ILE 54 n 54 ILE 54 B LYS 55 n 55 LYS 55 B VAL 56 n 56 VAL 56 B ARG 57 n 57 ARG 57 B GLN 58 n 58 GLN 58 B TYR 59 n 59 TYR 59 B ASP 60 n 60 ASP 60 B GLN 61 n 61 GLN 61 B ILE 62 n 62 ILE 62 B ILE 63 n 63 ILE 63 B ILE 64 n 64 ILE 64 B GLU 65 n 65 GLU 65 B ILE 66 n 66 ILE 66 B ALA 67 n 67 ALA 67 B GLY 68 n 68 GLY 68 B HIS 69 n 69 HIS 69 B LYS 70 n 70 LYS 70 B ALA 71 n 71 ALA 71 B ILE 72 n 72 ILE 72 B GLY 73 n 73 GLY 73 B THR 74 n 74 THR 74 B VAL 75 n 75 VAL 75 B LEU 76 n 76 LEU 76 B VAL 77 n 77 VAL 77 B GLY 78 n 78 GLY 78 B PRO 79 n 79 PRO 79 B THR 80 n 80 THR 80 B PRO 81 n 81 PRO 81 B VAL 82 n 82 VAL 82 B ASN 83 n 83 ASN 83 B ILE 84 n 84 ILE 84 B ILE 85 n 85 ILE 85 B GLY 86 n 86 GLY 86 B ARG 87 n 87 ARG 87 B ASN 88 n 88 ASN 88 B LEU 89 n 89 LEU 89 B LEU 90 n 90 LEU 90 B THR 91 n 91 THR 91 B GLN 92 n 92 GLN 92 B ILE 93 n 93 ILE 93 B GLY 94 n 94 GLY 94 B ALA 95 n 95 ALA 95 B THR 96 n 96 THR 96 B LEU 97 n 97 LEU 97 B ASN 98 n 98 ASN 98 B PHE 99 n 99 PHE 99 B author_and_software_defined_assembly PISA 2 dimeric 5070 -21 9420 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 3 A N ILE 3 B O LEU 97 B O LEU 97 B O THR 96 B O THR 96 A N ASN 98 A N ASN 98 A N LEU 97 A N LEU 97 B O ILE 3 B O ILE 3 A N LYS 43 A N LYS 43 A O GLN 58 A O GLN 58 A N ILE 66 A N ILE 66 A O HIS 69 A O HIS 69 A O LEU 76 A O LEU 76 A N ILE 33 A N ILE 33 A N VAL 32 A N VAL 32 A O ILE 84 A O ILE 84 A O ILE 85 A O ILE 85 A N LEU 23 A N LEU 23 A O LYS 20 A O LYS 20 A N ILE 13 A N ILE 13 A N LYS 14 A N LYS 14 A O GLU 65 A O GLU 65 B N LYS 43 B N LYS 43 B O GLN 58 B O GLN 58 B N ILE 66 B N ILE 66 B O HIS 69 B O HIS 69 B O LEU 76 B O LEU 76 B N ILE 33 B N ILE 33 B N VAL 32 B N VAL 32 B O ILE 84 B O ILE 84 B O ILE 85 B O ILE 85 B N LEU 23 B N LEU 23 B O LYS 20 B O LYS 20 B N ILE 13 B N ILE 13 B N LYS 14 B N LYS 14 B O GLU 65 B O GLU 65 1 A A O O HOH HOH 272 287 2.11 1 A A O O HOH HOH 266 279 2.13 0.2361 0.1700 0.1768 2.400 24.153 950 9505 9.99 99.94 0.21 1 FREE R-VALUE 1.34 MOLECULAR REPLACEMENT 22.48 0.90 1.11 2.400 24.153 160 1719 0 0 1559 0.008 1600 1.102 2172 14.191 594 0.039 258 0.004 268 0.2824 0.1974 2.5264 133 1200 100.00 0.3088 0.1965 2.6845 133 1191 100.00 0.2595 0.2057 2.8915 134 1204 100.00 0.2568 0.1991 3.1819 133 1200 100.00 0.2785 0.1679 3.6410 135 1221 100.00 0.1684 0.1391 4.5821 137 1230 100.00 0.2116 0.1481 24.1538 145 1309 100.00 2.4 25.7 5KQX 9541 1 8 6.55 99.9 1 refinement PHENIX 1.9_1692 data reduction iMOSFLM 7.1.1 data scaling Aimless phasing PHASER 2.1 N Protease E35D-SQV 1 N N 1 N N 2 N N 3 N N 3 N N A GLY 86 A GLY 86 HELX_P A THR 91 A THR 91 1 AA1 6 B GLY 86 B GLY 86 HELX_P B THR 91 B THR 91 1 AA2 6 HYDROLASE/HUDROLASE INHIBITOR HIV-1 protease, E35D, salt-bridge interaction, Natural polymorphism, HYDROLASE-HUDROLASE INHIBITOR complex C8BD48_9HIV1 UNP 1 1 C8BD48 PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMSLPGRWKPKMIGGIGGFIKVRQYDQIXIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF 1 99 5KQX 1 99 C8BD48 A 1 1 99 1 99 5KQX 1 99 C8BD48 B 1 1 99 1 GLN conflict LYS 7 5KQX A C8BD48 UNP 7 7 1 ASP conflict ASN 25 5KQX A C8BD48 UNP 25 25 1 LEU conflict ILE 33 5KQX A C8BD48 UNP 33 33 1 UNK conflict ILE 63 5KQX A C8BD48 UNP 63 63 1 CYS conflict ALA 67 5KQX A C8BD48 UNP 67 67 1 CYS conflict ALA 95 5KQX A C8BD48 UNP 95 95 2 GLN conflict LYS 7 5KQX B C8BD48 UNP 7 7 2 ASP conflict ASN 25 5KQX B C8BD48 UNP 25 25 2 LEU conflict ILE 33 5KQX B C8BD48 UNP 33 33 2 UNK conflict ILE 63 5KQX B C8BD48 UNP 63 63 2 CYS conflict ALA 67 5KQX B C8BD48 UNP 67 67 2 CYS conflict ALA 95 5KQX B C8BD48 UNP 95 95 4 8 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel A GLN 2 A GLN 2 A ILE 3 A ILE 3 B THR 96 B THR 96 B ASN 98 B ASN 98 A THR 96 A THR 96 A ASN 98 A ASN 98 B GLN 2 B GLN 2 B ILE 3 B ILE 3 A TRP 42 A TRP 42 A GLY 49 A GLY 49 A GLY 52 A GLY 52 A ILE 66 A ILE 66 A HIS 69 A HIS 69 A GLY 78 A GLY 78 A VAL 32 A VAL 32 A GLU 34 A GLU 34 A ILE 84 A ILE 84 A ILE 85 A ILE 85 A GLN 18 A GLN 18 A LEU 24 A LEU 24 A LEU 10 A LEU 10 A ILE 15 A ILE 15 A GLY 52 A GLY 52 A ILE 66 A ILE 66 B LYS 43 B LYS 43 B GLY 49 B GLY 49 B GLY 52 B GLY 52 B ILE 66 B ILE 66 B HIS 69 B HIS 69 B VAL 77 B VAL 77 B VAL 32 B VAL 32 B ILE 33 B ILE 33 B ILE 84 B ILE 84 B ILE 85 B ILE 85 B GLN 18 B GLN 18 B LEU 24 B LEU 24 B LEU 10 B LEU 10 B ILE 15 B ILE 15 B GLY 52 B GLY 52 B ILE 66 B ILE 66 binding site for Saquinavir chain A A ROC 101 Software 19 A ASN 25 A ASN 25 19 1_555 A GLY 27 A GLY 27 19 1_555 A ASP 29 A ASP 29 19 1_555 A ASP 30 A ASP 30 19 1_555 A ILE 47 A ILE 47 19 1_555 A GLY 48 A GLY 48 19 1_555 A ILE 50 A ILE 50 19 1_555 A PRO 81 A PRO 81 19 1_555 A ILE 84 A ILE 84 19 1_555 A HOH 219 D HOH 19 1_555 A HOH 234 D HOH 19 1_555 A HOH 263 D HOH 19 1_555 B ARG 8 B ARG 8 19 1_555 B ASN 25 B ASN 25 19 1_555 B ILE 47 B ILE 47 19 1_555 B GLY 48 B GLY 48 19 1_555 B GLY 49 B GLY 49 19 1_555 B PRO 81 B PRO 81 19 1_555 B ILE 84 B ILE 84 19 1_555 18 P 2 21 21