0.012194
0.000000
0.000000
0.000000
0.010327
0.000000
0.000000
0.000000
0.017304
0.000000
0.000000
0.000000
Lolli, G.
Marchand, J.-R.
Caflisch, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
82.009
96.837
57.789
C15 H15 N3 S
269.365
2-methyl-~{N}-[(1~{S})-1-thieno[3,2-b]pyridin-6-ylethyl]pyridin-3-amine
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
S
C
N
3
N
N
Y
4
N
C
Y
5
N
C
N
6
N
C
Y
7
N
N
Y
8
N
C
Y
9
N
C
Y
10
N
C
Y
11
N
C
Y
12
N
C
Y
13
N
C
Y
14
N
C
Y
15
N
C
Y
16
N
C
Y
17
N
S
Y
18
N
N
Y
19
N
C
N
20
N
H
N
21
N
H
N
22
N
H
N
23
N
H
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
N
N
36
S
C
N
37
N
C
N
38
N
O
N
39
N
C
N
40
N
O
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
N
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
C
N
55
N
N
N
56
N
C
N
57
N
N
N
58
N
N
N
59
N
O
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
N
N
76
S
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
N
N
93
S
C
N
94
N
C
N
95
N
O
N
96
N
C
N
97
N
C
N
98
N
O
N
99
N
O
N
100
N
O
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
R
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
S
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
N
N
123
S
C
N
124
N
C
N
125
N
O
N
126
N
C
N
127
N
C
N
128
N
C
N
129
N
O
N
130
N
N
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
N
N
143
S
C
N
144
N
C
N
145
N
O
N
146
N
C
N
147
N
C
N
148
N
C
N
149
N
O
N
150
N
O
N
151
N
O
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
O
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
N
N
172
S
C
N
173
N
C
N
174
N
O
N
175
N
C
Y
176
N
C
Y
177
N
N
Y
178
N
C
Y
179
N
C
Y
180
N
N
N
181
N
O
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
N
N
196
S
C
N
197
N
C
N
198
N
O
N
199
S
C
N
200
N
C
N
201
N
C
N
202
N
C
N
203
N
O
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
C
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
N
N
240
S
C
N
241
N
C
N
242
N
O
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
C
N
247
N
N
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
N
C
N
269
N
C
N
270
N
S
N
271
N
C
N
272
N
O
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
N
N
285
S
C
N
286
N
C
N
287
N
O
N
288
N
C
Y
289
N
C
Y
290
N
C
Y
291
N
C
Y
292
N
C
Y
293
N
C
Y
294
N
C
N
295
N
O
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
N
312
N
C
N
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
N
N
325
S
C
N
326
N
C
N
327
N
O
N
328
N
C
N
329
N
O
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
R
C
N
343
N
O
N
344
N
C
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
N
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
N
369
N
O
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
N
N
383
S
C
N
384
N
C
N
385
N
O
N
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
Y
390
N
C
Y
391
N
C
Y
392
N
C
N
393
N
O
N
394
N
O
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
N
N
407
S
C
N
408
N
C
N
409
N
O
N
410
N
C
N
411
N
C
N
412
N
C
N
413
N
O
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
1
N
sing
Y
2
N
doub
Y
3
N
sing
N
4
N
sing
N
5
N
sing
Y
6
N
sing
Y
7
N
doub
N
8
N
sing
Y
9
N
doub
Y
10
N
sing
Y
11
N
sing
Y
12
N
doub
N
13
N
sing
Y
14
N
doub
Y
15
N
sing
Y
16
N
sing
Y
17
N
doub
Y
18
N
sing
Y
19
N
doub
Y
20
N
sing
Y
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
doub
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
doub
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
doub
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
doub
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
doub
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
doub
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
doub
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
Y
176
N
sing
Y
177
N
doub
Y
178
N
doub
N
179
N
sing
Y
180
N
sing
N
181
N
sing
Y
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
doub
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
doub
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
Y
284
N
doub
Y
285
N
sing
Y
286
N
sing
N
287
N
sing
Y
288
N
doub
N
289
N
sing
Y
290
N
doub
N
291
N
sing
Y
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
doub
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
Y
353
N
doub
Y
354
N
sing
Y
355
N
sing
N
356
N
sing
Y
357
N
doub
Y
358
N
sing
Y
359
N
sing
N
360
N
sing
Y
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
doub
N
365
N
sing
Y
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
Y
381
N
doub
Y
382
N
sing
Y
383
N
sing
N
384
N
sing
Y
385
N
doub
N
386
N
sing
Y
387
N
doub
N
388
N
sing
Y
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
doub
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
US
J. Med. Chem.
JMCMAR
0151
1520-4804
59
9919
9927
10.1021/acs.jmedchem.6b01258
27731638
Derivatives of 3-Amino-2-methylpyridine as BAZ2B Bromodomain Ligands: In Silico Discovery and in Crystallo Validation.
2016
10.2210/pdb5l99/pdb
pdb_00005l99
100
1
PIXEL
2016-05-05
DECTRIS PILATUS 2M
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
5.2R
ELETTRA
1.0
SYNCHROTRON
ELETTRA BEAMLINE 5.2R
13531.574
Bromodomain adjacent to zinc finger domain protein 2B
Bromodomain (residues 2054-2168)
First two residues SM derive from the expression tag
1
man
polymer
269.365
2-methyl-~{N}-[(1~{S})-1-thieno[3,2-b]pyridin-6-ylethyl]pyridin-3-amine
1
syn
non-polymer
18.015
water
99
nat
water
hWALp4
no
no
SMSVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRL
VFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFKV
SMSVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRL
VFDNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFKV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
116
BAZ2B, KIAA1476
9606
Homo sapiens
562
Escherichia coli
Biological sequence
1
4.24
70.99
0.250
VAPOR DIFFUSION, SITTING DROP
7.5
PEG500MME (20%), PEG1000 (2%), PEG3350 (2%), PEG20000 (10%), MPD (2%)
277
chem_comp_atom
chem_comp_bond
database_2
diffrn_radiation_wavelength
pdbx_initial_refinement_model
repository
Initial release
Database references
Data collection
Database references
Refinement description
1
0
2016-10-26
1
1
2016-12-21
1
2
2024-01-10
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Switzerland
Swiss National Science Foundation
Switzerland
Swiss Cancer League
5E9K contains the same protein complexed with a similar head group.
5L8T contains the same protein complexed with a similar compound.
5L8U contains the same protein complexed with a similar compound.
5L96 contains the same protein complexed with a similar compound.
5L97 contains the same protein complexed with a similar compound.
5L98 contains the same protein complexed with a similar compound.
N
PDBE
Y
PDBE
2016-06-09
REL
REL
6S0
2-methyl-~{N}-[(1~{S})-1-thieno[3,2-b]pyridin-6-ylethyl]pyridin-3-amine
HOH
water
4IR5
PDB
experimental model
909
1
2
6S0
6S0
2001
A
HOH
97
3
HOH
HOH
2101
A
HOH
25
3
HOH
HOH
2102
A
HOH
32
3
HOH
HOH
2103
A
HOH
87
3
HOH
HOH
2104
A
HOH
98
3
HOH
HOH
2105
A
HOH
39
3
HOH
HOH
2106
A
HOH
10
3
HOH
HOH
2107
A
HOH
13
3
HOH
HOH
2108
A
HOH
12
3
HOH
HOH
2109
A
HOH
57
3
HOH
HOH
2110
A
HOH
20
3
HOH
HOH
2111
A
HOH
26
3
HOH
HOH
2112
A
HOH
11
3
HOH
HOH
2113
A
HOH
27
3
HOH
HOH
2114
A
HOH
84
3
HOH
HOH
2115
A
HOH
23
3
HOH
HOH
2116
A
HOH
15
3
HOH
HOH
2117
A
HOH
34
3
HOH
HOH
2118
A
HOH
2
3
HOH
HOH
2119
A
HOH
96
3
HOH
HOH
2120
A
HOH
67
3
HOH
HOH
2121
A
HOH
18
3
HOH
HOH
2122
A
HOH
17
3
HOH
HOH
2123
A
HOH
36
3
HOH
HOH
2124
A
HOH
54
3
HOH
HOH
2125
A
HOH
41
3
HOH
HOH
2126
A
HOH
78
3
HOH
HOH
2127
A
HOH
28
3
HOH
HOH
2128
A
HOH
22
3
HOH
HOH
2129
A
HOH
6
3
HOH
HOH
2130
A
HOH
40
3
HOH
HOH
2131
A
HOH
16
3
HOH
HOH
2132
A
HOH
43
3
HOH
HOH
2133
A
HOH
51
3
HOH
HOH
2134
A
HOH
33
3
HOH
HOH
2135
A
HOH
31
3
HOH
HOH
2136
A
HOH
80
3
HOH
HOH
2137
A
HOH
30
3
HOH
HOH
2138
A
HOH
53
3
HOH
HOH
2139
A
HOH
52
3
HOH
HOH
2140
A
HOH
95
3
HOH
HOH
2141
A
HOH
50
3
HOH
HOH
2142
A
HOH
64
3
HOH
HOH
2143
A
HOH
21
3
HOH
HOH
2144
A
HOH
29
3
HOH
HOH
2145
A
HOH
46
3
HOH
HOH
2146
A
HOH
9
3
HOH
HOH
2147
A
HOH
47
3
HOH
HOH
2148
A
HOH
1
3
HOH
HOH
2149
A
HOH
42
3
HOH
HOH
2150
A
HOH
38
3
HOH
HOH
2151
A
HOH
7
3
HOH
HOH
2152
A
HOH
4
3
HOH
HOH
2153
A
HOH
65
3
HOH
HOH
2154
A
HOH
19
3
HOH
HOH
2155
A
HOH
89
3
HOH
HOH
2156
A
HOH
37
3
HOH
HOH
2157
A
HOH
35
3
HOH
HOH
2158
A
HOH
61
3
HOH
HOH
2159
A
HOH
76
3
HOH
HOH
2160
A
HOH
24
3
HOH
HOH
2161
A
HOH
69
3
HOH
HOH
2162
A
HOH
44
3
HOH
HOH
2163
A
HOH
8
3
HOH
HOH
2164
A
HOH
3
3
HOH
HOH
2165
A
HOH
92
3
HOH
HOH
2166
A
HOH
63
3
HOH
HOH
2167
A
HOH
86
3
HOH
HOH
2168
A
HOH
83
3
HOH
HOH
2169
A
HOH
94
3
HOH
HOH
2170
A
HOH
73
3
HOH
HOH
2171
A
HOH
48
3
HOH
HOH
2172
A
HOH
5
3
HOH
HOH
2173
A
HOH
71
3
HOH
HOH
2174
A
HOH
58
3
HOH
HOH
2175
A
HOH
55
3
HOH
HOH
2176
A
HOH
72
3
HOH
HOH
2177
A
HOH
70
3
HOH
HOH
2178
A
HOH
77
3
HOH
HOH
2179
A
HOH
82
3
HOH
HOH
2180
A
HOH
14
3
HOH
HOH
2181
A
HOH
74
3
HOH
HOH
2182
A
HOH
88
3
HOH
HOH
2183
A
HOH
62
3
HOH
HOH
2184
A
HOH
85
3
HOH
HOH
2185
A
HOH
91
3
HOH
HOH
2186
A
HOH
75
3
HOH
HOH
2187
A
HOH
56
3
HOH
HOH
2188
A
HOH
93
3
HOH
HOH
2189
A
HOH
60
3
HOH
HOH
2190
A
HOH
81
3
HOH
HOH
2191
A
HOH
66
3
HOH
HOH
2192
A
HOH
45
3
HOH
HOH
2193
A
HOH
49
3
HOH
HOH
2194
A
HOH
90
3
HOH
HOH
2195
A
HOH
68
3
HOH
HOH
2196
A
HOH
99
3
HOH
HOH
2197
A
HOH
79
3
HOH
HOH
2198
A
HOH
59
3
HOH
HOH
2199
A
SER
1856
n
1
SER
1856
A
MET
1857
n
2
MET
1857
A
SER
1858
n
3
SER
1858
A
VAL
1859
n
4
VAL
1859
A
LYS
1860
n
5
LYS
1860
A
LYS
1861
n
6
LYS
1861
A
PRO
1862
n
7
PRO
1862
A
LYS
1863
n
8
LYS
1863
A
ARG
1864
n
9
ARG
1864
A
ASP
1865
n
10
ASP
1865
A
ASP
1866
n
11
ASP
1866
A
SER
1867
n
12
SER
1867
A
LYS
1868
n
13
LYS
1868
A
ASP
1869
n
14
ASP
1869
A
LEU
1870
n
15
LEU
1870
A
ALA
1871
n
16
ALA
1871
A
LEU
1872
n
17
LEU
1872
A
CYS
1873
n
18
CYS
1873
A
SER
1874
n
19
SER
1874
A
MET
1875
n
20
MET
1875
A
ILE
1876
n
21
ILE
1876
A
LEU
1877
n
22
LEU
1877
A
THR
1878
n
23
THR
1878
A
GLU
1879
n
24
GLU
1879
A
MET
1880
n
25
MET
1880
A
GLU
1881
n
26
GLU
1881
A
THR
1882
n
27
THR
1882
A
HIS
1883
n
28
HIS
1883
A
GLU
1884
n
29
GLU
1884
A
ASP
1885
n
30
ASP
1885
A
ALA
1886
n
31
ALA
1886
A
TRP
1887
n
32
TRP
1887
A
PRO
1888
n
33
PRO
1888
A
PHE
1889
n
34
PHE
1889
A
LEU
1890
n
35
LEU
1890
A
LEU
1891
n
36
LEU
1891
A
PRO
1892
n
37
PRO
1892
A
VAL
1893
n
38
VAL
1893
A
ASN
1894
n
39
ASN
1894
A
LEU
1895
n
40
LEU
1895
A
LYS
1896
n
41
LYS
1896
A
LEU
1897
n
42
LEU
1897
A
VAL
1898
n
43
VAL
1898
A
PRO
1899
n
44
PRO
1899
A
GLY
1900
n
45
GLY
1900
A
TYR
1901
n
46
TYR
1901
A
LYS
1902
n
47
LYS
1902
A
LYS
1903
n
48
LYS
1903
A
VAL
1904
n
49
VAL
1904
A
ILE
1905
n
50
ILE
1905
A
LYS
1906
n
51
LYS
1906
A
LYS
1907
n
52
LYS
1907
A
PRO
1908
n
53
PRO
1908
A
MET
1909
n
54
MET
1909
A
ASP
1910
n
55
ASP
1910
A
PHE
1911
n
56
PHE
1911
A
SER
1912
n
57
SER
1912
A
THR
1913
n
58
THR
1913
A
ILE
1914
n
59
ILE
1914
A
ARG
1915
n
60
ARG
1915
A
GLU
1916
n
61
GLU
1916
A
LYS
1917
n
62
LYS
1917
A
LEU
1918
n
63
LEU
1918
A
SER
1919
n
64
SER
1919
A
SER
1920
n
65
SER
1920
A
GLY
1921
n
66
GLY
1921
A
GLN
1922
n
67
GLN
1922
A
TYR
1923
n
68
TYR
1923
A
PRO
1924
n
69
PRO
1924
A
ASN
1925
n
70
ASN
1925
A
LEU
1926
n
71
LEU
1926
A
GLU
1927
n
72
GLU
1927
A
THR
1928
n
73
THR
1928
A
PHE
1929
n
74
PHE
1929
A
ALA
1930
n
75
ALA
1930
A
LEU
1931
n
76
LEU
1931
A
ASP
1932
n
77
ASP
1932
A
VAL
1933
n
78
VAL
1933
A
ARG
1934
n
79
ARG
1934
A
LEU
1935
n
80
LEU
1935
A
VAL
1936
n
81
VAL
1936
A
PHE
1937
n
82
PHE
1937
A
ASP
1938
n
83
ASP
1938
A
ASN
1939
n
84
ASN
1939
A
CYS
1940
n
85
CYS
1940
A
GLU
1941
n
86
GLU
1941
A
THR
1942
n
87
THR
1942
A
PHE
1943
n
88
PHE
1943
A
ASN
1944
n
89
ASN
1944
A
GLU
1945
n
90
GLU
1945
A
ASP
1946
n
91
ASP
1946
A
ASP
1947
n
92
ASP
1947
A
SER
1948
n
93
SER
1948
A
ASP
1949
n
94
ASP
1949
A
ILE
1950
n
95
ILE
1950
A
GLY
1951
n
96
GLY
1951
A
ARG
1952
n
97
ARG
1952
A
ALA
1953
n
98
ALA
1953
A
GLY
1954
n
99
GLY
1954
A
HIS
1955
n
100
HIS
1955
A
ASN
1956
n
101
ASN
1956
A
MET
1957
n
102
MET
1957
A
ARG
1958
n
103
ARG
1958
A
LYS
1959
n
104
LYS
1959
A
TYR
1960
n
105
TYR
1960
A
PHE
1961
n
106
PHE
1961
A
GLU
1962
n
107
GLU
1962
A
LYS
1963
n
108
LYS
1963
A
LYS
1964
n
109
LYS
1964
A
TRP
1965
n
110
TRP
1965
A
THR
1966
n
111
THR
1966
A
ASP
1967
n
112
ASP
1967
A
THR
1968
n
113
THR
1968
A
PHE
1969
n
114
PHE
1969
A
LYS
1970
n
115
LYS
1970
A
VAL
1971
n
116
VAL
1971
A
4.3290
-0.2952
-1.5049
0.0966
0.1425
0.5272
-0.5586
-0.6354
-0.6782
0.0514
-0.0168
0.2107
-0.1728
0.2296
0.4780
0.4366
-0.0168
0.0202
0.5413
0.0812
0.5767
refined
1.2775
-34.5742
-9.8331
X-RAY DIFFRACTION
2.3858
-0.7082
-0.1323
1.7077
0.5367
1.6755
0.0634
0.0658
-0.0773
-0.1481
-0.0454
0.1247
-0.1373
0.0002
-0.0292
0.3016
0.0029
-0.0218
0.2566
0.0076
0.2499
refined
-20.7816
-17.6518
-4.0530
X-RAY DIFFRACTION
2.3784
-0.5785
-0.5116
4.0889
0.6715
3.1208
-0.2988
-0.4971
-0.2008
0.6581
0.1741
-0.0766
0.0921
0.3955
0.0372
0.4534
0.0516
-0.0423
0.3745
0.0413
0.2602
refined
-18.1411
-19.7896
7.3640
X-RAY DIFFRACTION
A
0
A
0
X-RAY DIFFRACTION
1
chain 'A' and (resid 1856 through 1868 )
A
0
A
0
X-RAY DIFFRACTION
2
chain 'A' and (resid 1869 through 1943 )
A
0
A
0
X-RAY DIFFRACTION
3
chain 'A' and (resid 1944 through 1971 )
software_defined_assembly
PISA
1
monomeric
0
0
7950
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
LYS
1970
-84.05
49.07
120.860
44.8716
24.260
0.2038
0.1773
0.1787
2.0000
48.4190
846
15834
5.3400
99.5700
0.2100
1
FREE R-VALUE
1.340
MOLECULAR REPLACEMENT
24.3900
0.9000
1.1100
4IR5
2.0000
48.4190
99
1065
61.82
48.00
19
0
947
116
0.007
996
0.995
1342
0.039
143
0.004
169
13.623
379
0.2603
0.2594
2.1253
154
2424
2578
6
100.0000
0.2443
0.2150
2.2894
138
2463
2601
6
99.0000
0.1995
0.1936
2.5198
137
2471
2608
6
99.0000
0.2242
0.1871
2.8844
141
2497
2638
6
100.0000
0.1985
0.1828
3.6339
131
2511
2642
6
100.0000
0.1834
0.1497
48.4327
145
2622
2767
6
100.0000
2.000
48.420
5L99
15886
0.999
0.076
1
14.300
6.200
99.900
0.893
2.000
2.050
7651
1158
0.859
0.375
0.970
1
2.100
6.600
0
100.000
0.028
8.940
48.420
1227
213
0.999
0.012
0.031
1
44.100
5.800
0
99.000
data scaling
Aimless
phasing
PHASER
refinement
PHENIX
data extraction
PDB_EXTRACT
3.20
data reduction
XDS
data reduction
XDS
N
Crystal Structure of BAZ2B bromodomain in complex with 3-amino-2-methylpyridine derivative 6
1
N
N
2
N
N
3
N
N
A
LYS
1868
A
LYS
13
HELX_P
A
HIS
1883
A
HIS
28
1
AA1
16
A
GLU
1884
A
GLU
29
HELX_P
A
LEU
1890
A
LEU
35
5
AA2
7
A
GLY
1900
A
GLY
45
HELX_P
A
ILE
1905
A
ILE
50
1
AA3
6
A
ASP
1910
A
ASP
55
HELX_P
A
SER
1920
A
SER
65
1
AA4
11
A
ASN
1925
A
ASN
70
HELX_P
A
ASN
1944
A
ASN
89
1
AA5
20
A
SER
1948
A
SER
93
HELX_P
A
LYS
1970
A
LYS
115
1
AA6
23
TRANSCRIPTION
four helical bundle, transcription
BAZ2B_HUMAN
UNP
1
1954
Q9UIF8
Q9UIF8-2
SVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVF
DNCETFNEDDSDIGRAGHNMRKYFEKKWTDTFKV
1954
2067
5L99
1858
1971
Q9UIF8
A
1
3
116
1
expression tag
SER
1856
5L99
A
Q9UIF8
UNP
1
1
expression tag
MET
1857
5L99
A
Q9UIF8
UNP
2
binding site for residue 6S0 A 2001
A
6S0
2001
Software
6
A
PRO
1888
A
PRO
33
6
1_555
A
VAL
1893
A
VAL
38
6
1_555
A
TYR
1901
A
TYR
46
6
1_555
A
PHE
1943
A
PHE
88
6
1_555
A
ASN
1944
A
ASN
89
6
1_555
A
HOH
2107
C
HOH
6
1_555
20
C 2 2 21