0.017652
0.010191
0.000000
0.000000
0.020383
0.000000
0.000000
0.000000
0.009608
0.000000
0.000000
0.000000
Kessler, D.
Gollner, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.000
90.000
120.000
56.651
56.651
104.085
C22 H25 Cl2 N3 O
418.359
(3~{S},3'~{S},4'~{S})-4'-azanyl-6-chloranyl-3'-(3-chlorophenyl)-1'-(2,2-dimethylpropyl)spiro[1~{H}-indole-3,2'-pyrrolidine]-2-one
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Y
1
N
C
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
N
7
S
C
N
8
N
C
N
9
N
C
N
10
N
C
N
11
N
C
N
12
N
C
Y
13
N
C
Y
14
N
C
Y
15
N
C
Y
16
N
C
N
17
N
CL
N
18
S
C
N
19
N
N
N
20
N
C
N
21
N
N
N
22
S
C
Y
23
N
C
N
24
N
CL
Y
25
N
C
N
26
N
N
N
27
N
C
N
28
N
O
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
N
N
55
S
C
N
56
N
C
N
57
N
O
N
58
N
C
N
59
N
O
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
N
N
68
S
C
N
69
N
C
N
70
N
O
N
71
N
C
N
72
N
C
N
73
N
C
N
74
N
N
N
75
N
C
N
76
N
N
N
77
N
N
N
78
N
O
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
O
N
101
N
N
N
102
N
O
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
S
C
N
113
N
C
N
114
N
O
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
O
N
119
N
O
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
R
C
N
129
N
C
N
130
N
O
N
131
N
C
N
132
N
S
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
N
N
142
S
C
N
143
N
C
N
144
N
O
N
145
N
C
N
146
N
C
N
147
N
C
N
148
N
O
N
149
N
N
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
N
C
N
166
N
C
N
167
N
C
N
168
N
O
N
169
N
O
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
O
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
N
N
191
S
C
N
192
N
C
N
193
N
O
N
194
N
C
Y
195
N
C
Y
196
N
N
Y
197
N
C
Y
198
N
C
Y
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
N
N
215
S
C
N
216
N
C
N
217
N
O
N
218
S
C
N
219
N
C
N
220
N
C
N
221
N
C
N
222
N
O
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
N
241
N
C
N
242
N
C
N
243
N
C
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
N
N
259
S
C
N
260
N
C
N
261
N
O
N
262
N
C
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
N
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
N
N
284
S
C
N
285
N
C
N
286
N
O
N
287
N
C
N
288
N
C
N
289
N
S
N
290
N
C
N
291
N
O
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
N
N
304
S
C
N
305
N
C
N
306
N
O
N
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
N
C
N
331
N
C
N
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
N
348
N
O
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
S
N
358
N
O
N
359
N
O
N
360
N
O
N
361
N
O
N
362
N
N
N
363
S
C
N
364
N
C
N
365
N
O
N
366
R
C
N
367
N
O
N
368
N
C
N
369
N
O
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
N
N
380
S
C
N
381
N
C
N
382
N
O
N
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
Y
387
N
C
Y
388
N
C
Y
389
N
C
N
390
N
O
N
391
N
O
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
N
N
404
S
C
N
405
N
C
N
406
N
O
N
407
N
C
N
408
N
C
N
409
N
C
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
1
N
sing
Y
2
N
doub
Y
3
N
sing
Y
4
N
sing
N
5
N
sing
Y
6
N
doub
N
7
N
sing
Y
8
N
doub
N
9
N
sing
N
10
N
sing
Y
11
N
sing
Y
12
N
doub
Y
13
N
sing
Y
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
Y
18
N
doub
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
Y
23
N
doub
N
24
N
sing
N
25
N
sing
Y
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
doub
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
doub
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
doub
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
doub
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
Y
196
N
sing
Y
197
N
doub
Y
198
N
doub
N
199
N
sing
Y
200
N
sing
N
201
N
sing
Y
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
doub
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
doub
N
311
N
sing
Y
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
doub
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
doub
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
Y
377
N
doub
Y
378
N
sing
Y
379
N
sing
N
380
N
sing
Y
381
N
doub
N
382
N
sing
Y
383
N
doub
N
384
N
sing
Y
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
doub
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
US
J. Med. Chem.
JMCMAR
0151
1520-4804
59
10147
10162
10.1021/acs.jmedchem.6b00900
27775892
Discovery of Novel Spiro[3H-indole-3,2'-pyrrolidin]-2(1H)-one Compounds as Chemically Stable and Orally Active Inhibitors of the MDM2-p53 Interaction.
2016
10.2210/pdb5lav/pdb
pdb_00005lav
100.0
1
PIXEL
2013-02-10
DECTRIS PILATUS 6M
SINGLE WAVELENGTH
M
x-ray
1
1.00003
1.0
X06SA
SLS
1.00003
SYNCHROTRON
SLS BEAMLINE X06SA
10883.793
E3 ubiquitin-protein ligase Mdm2
6.3.2.-
1
man
polymer
418.359
(3~{S},3'~{S},4'~{S})-4'-azanyl-6-chloranyl-3'-(3-chlorophenyl)-1'-(2,2-dimethylpropyl)spiro[1~{H}-indole-3,2'-pyrrolidine]-2-one
1
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
32
nat
water
Double minute 2 protein,Hdm2,Oncoprotein Mdm2,p53-binding protein Mdm2
no
no
IPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRK
IYTMIYRNLVVVN
IPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRK
IYTMIYRNLVVVN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
93
MDM2
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
plasmid
Biological sequence
pGEX4T2
1
2.300
46.650
VAPOR DIFFUSION, HANGING DROP
4.5
RESERVOIR SOLUTION : NULL
277
pdbx_unobs_or_zero_occ_atoms
reflns
reflns_shell
struct
chem_comp_atom
chem_comp_bond
database_2
pdbx_unobs_or_zero_occ_atoms
repository
Initial release
Database references
Advisory
Data collection
Structure summary
Advisory
Data collection
Database references
1
0
2016-11-02
1
1
2016-12-21
1
2
2018-04-25
1
3
2024-05-08
_reflns.pdbx_Rmerge_I_obs
_reflns_shell.Rmerge_I_obs
_struct.title
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
N
PDBE
Y
PDBE
2016-06-15
REL
REL
6SK
(3~{S},3'~{S},4'~{S})-4'-azanyl-6-chloranyl-3'-(3-chlorophenyl)-1'-(2,2-dimethylpropyl)spiro[1~{H}-indole-3,2'-pyrrolidine]-2-one
SO4
SULFATE ION
HOH
water
INX
1
2
6SK
6SK
201
A
SO4
1
3
SO4
SO4
202
A
HOH
13
4
HOH
HOH
301
A
HOH
5
4
HOH
HOH
302
A
HOH
4
4
HOH
HOH
303
A
HOH
32
4
HOH
HOH
304
A
HOH
17
4
HOH
HOH
305
A
HOH
2
4
HOH
HOH
306
A
HOH
20
4
HOH
HOH
307
A
HOH
3
4
HOH
HOH
308
A
HOH
21
4
HOH
HOH
309
A
HOH
31
4
HOH
HOH
310
A
HOH
18
4
HOH
HOH
311
A
HOH
24
4
HOH
HOH
312
A
HOH
9
4
HOH
HOH
313
A
HOH
16
4
HOH
HOH
314
A
HOH
8
4
HOH
HOH
315
A
HOH
12
4
HOH
HOH
316
A
HOH
11
4
HOH
HOH
317
A
HOH
1
4
HOH
HOH
318
A
HOH
22
4
HOH
HOH
319
A
HOH
23
4
HOH
HOH
320
A
HOH
15
4
HOH
HOH
321
A
HOH
14
4
HOH
HOH
322
A
HOH
29
4
HOH
HOH
323
A
HOH
7
4
HOH
HOH
324
A
HOH
19
4
HOH
HOH
325
A
HOH
30
4
HOH
HOH
326
A
HOH
27
4
HOH
HOH
327
A
HOH
26
4
HOH
HOH
328
A
HOH
25
4
HOH
HOH
329
A
HOH
28
4
HOH
HOH
330
A
HOH
6
4
HOH
HOH
331
A
HOH
10
4
HOH
HOH
332
A
ILE
19
n
1
ILE
19
A
PRO
20
n
2
PRO
20
A
ALA
21
n
3
ALA
21
A
SER
22
n
4
SER
22
A
GLU
23
n
5
GLU
23
A
GLN
24
n
6
GLN
24
A
GLU
25
n
7
GLU
25
A
THR
26
n
8
THR
26
A
LEU
27
n
9
LEU
27
A
VAL
28
n
10
VAL
28
A
ARG
29
n
11
ARG
29
A
PRO
30
n
12
PRO
30
A
LYS
31
n
13
LYS
31
A
PRO
32
n
14
PRO
32
A
LEU
33
n
15
LEU
33
A
LEU
34
n
16
LEU
34
A
LEU
35
n
17
LEU
35
A
LYS
36
n
18
LYS
36
A
LEU
37
n
19
LEU
37
A
LEU
38
n
20
LEU
38
A
LYS
39
n
21
LYS
39
A
SER
40
n
22
SER
40
A
VAL
41
n
23
VAL
41
A
GLY
42
n
24
GLY
42
A
ALA
43
n
25
ALA
43
A
GLN
44
n
26
GLN
44
A
LYS
45
n
27
LYS
45
A
ASP
46
n
28
ASP
46
A
THR
47
n
29
THR
47
A
TYR
48
n
30
TYR
48
A
THR
49
n
31
THR
49
A
MET
50
n
32
MET
50
A
LYS
51
n
33
LYS
51
A
GLU
52
n
34
GLU
52
A
VAL
53
n
35
VAL
53
A
LEU
54
n
36
LEU
54
A
PHE
55
n
37
PHE
55
A
TYR
56
n
38
TYR
56
A
LEU
57
n
39
LEU
57
A
GLY
58
n
40
GLY
58
A
GLN
59
n
41
GLN
59
A
TYR
60
n
42
TYR
60
A
ILE
61
n
43
ILE
61
A
MET
62
n
44
MET
62
A
THR
63
n
45
THR
63
A
LYS
64
n
46
LYS
64
A
ARG
65
n
47
ARG
65
A
LEU
66
n
48
LEU
66
A
TYR
67
n
49
TYR
67
A
ASP
68
n
50
ASP
68
A
GLU
69
n
51
GLU
69
A
LYS
70
n
52
LYS
70
A
GLN
71
n
53
GLN
71
A
GLN
72
n
54
GLN
72
A
HIS
73
n
55
HIS
73
A
ILE
74
n
56
ILE
74
A
VAL
75
n
57
VAL
75
A
TYR
76
n
58
TYR
76
A
CYS
77
n
59
CYS
77
A
SER
78
n
60
SER
78
A
ASN
79
n
61
ASN
79
A
ASP
80
n
62
ASP
80
A
LEU
81
n
63
LEU
81
A
LEU
82
n
64
LEU
82
A
GLY
83
n
65
GLY
83
A
ASP
84
n
66
ASP
84
A
LEU
85
n
67
LEU
85
A
PHE
86
n
68
PHE
86
A
GLY
87
n
69
GLY
87
A
VAL
88
n
70
VAL
88
A
PRO
89
n
71
PRO
89
A
SER
90
n
72
SER
90
A
PHE
91
n
73
PHE
91
A
SER
92
n
74
SER
92
A
VAL
93
n
75
VAL
93
A
LYS
94
n
76
LYS
94
A
GLU
95
n
77
GLU
95
A
HIS
96
n
78
HIS
96
A
ARG
97
n
79
ARG
97
A
LYS
98
n
80
LYS
98
A
ILE
99
n
81
ILE
99
A
TYR
100
n
82
TYR
100
A
THR
101
n
83
THR
101
A
MET
102
n
84
MET
102
A
ILE
103
n
85
ILE
103
A
TYR
104
n
86
TYR
104
A
ARG
105
n
87
ARG
105
A
ASN
106
n
88
ASN
106
A
LEU
107
n
89
LEU
107
A
VAL
108
n
90
VAL
108
A
VAL
109
n
91
VAL
109
A
VAL
110
n
92
VAL
110
A
ASN
111
n
93
ASN
111
A
author_and_software_defined_assembly
PISA
1
monomeric
110
-8
6070
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
48
A
O
TYR
30
A
N
VAL
28
A
N
VAL
10
A
N
LEU
27
A
N
LEU
9
A
O
VAL
110
A
O
VAL
92
A
N
VAL
75
A
N
VAL
57
A
O
PHE
91
A
O
PHE
73
1
A
CG
LYS
70
A
CG
LYS
52
0
Y
1
A
CD
LYS
70
A
CD
LYS
52
0
Y
1
A
CE
LYS
70
A
CE
LYS
52
0
Y
1
A
NZ
LYS
70
A
NZ
LYS
52
0
Y
1
A
CD
GLN
72
A
CD
GLN
54
0
Y
1
A
OE1
GLN
72
A
OE1
GLN
54
0
Y
1
A
NE2
GLN
72
A
NE2
GLN
54
0
Y
1
A
CG
LYS
94
A
CG
LYS
76
0
Y
1
A
CD
LYS
94
A
CD
LYS
76
0
Y
1
A
CE
LYS
94
A
CE
LYS
76
0
Y
1
A
NZ
LYS
94
A
NZ
LYS
76
0
Y
1
A
CZ
ARG
97
A
CZ
ARG
79
0
Y
1
A
NH1
ARG
97
A
NH1
ARG
79
0
Y
1
A
NH2
ARG
97
A
NH2
ARG
79
0
Y
1
A
CG
LYS
98
A
CG
LYS
80
0
Y
1
A
CD
LYS
98
A
CD
LYS
80
0
Y
1
A
CE
LYS
98
A
CE
LYS
80
0
Y
1
A
NZ
LYS
98
A
NZ
LYS
80
0
Y
1
A
ASN
79
-117.40
53.17
62.010
17.9100
9.060
-1.0300
-0.5100
0.0000
-1.0300
0.0000
1.5400
0.9450
0.9310
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.2733
0.2415
0.2445
1.7300
49.0600
1065
9857
9.8000
99.9900
6.8800
0.1130
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.1530
0.1410
0.8000
0.8000
1.4000
NONE
1.7300
49.0600
32
830
35.62
43.42
33
0
765
93
0.010
0.022
810
0.002
0.020
540
1.245
2.038
1106
1.028
3.000
1317
5.677
5.000
94
42.274
24.063
32
13.992
15.000
140
5.208
15.000
3
0.061
0.200
125
0.004
0.021
862
0.001
0.020
159
1.819
2.000
472
0.455
2.000
187
2.547
3.000
768
3.589
4.000
338
5.236
6.000
338
0.3770
0.3490
1.7750
91
700
791
20
100.0000
1.730
49.060
5LAV
10925
0.000
0.043
1
40.83
22.900
100.000
0.428
1.730
1.980
1
23.300
100.000
refinement
REFMAC
5.5.0109
data extraction
PDB_EXTRACT
3.20
data reduction
XDS
data scaling
XSCALE
phasing
REFMAC
N
Novel Spiro[3H-indole-3,2 -pyrrolidin]-2(1H)-one Inhibitors of the MDM2-p53 Interaction: HDM2 (MDM2) in complex with compound 6b
1
N
N
2
N
N
3
N
N
4
N
N
A
PRO
20
A
PRO
2
HELX_P
A
GLU
25
A
GLU
7
5
AA1
6
A
LYS
31
A
LYS
13
HELX_P
A
SER
40
A
SER
22
1
AA2
10
A
MET
50
A
MET
32
HELX_P
A
LYS
64
A
LYS
46
1
AA3
15
A
ASP
80
A
ASP
62
HELX_P
A
GLY
87
A
GLY
69
1
AA4
8
A
GLU
95
A
GLU
77
HELX_P
A
ARG
105
A
ARG
87
1
AA5
11
LIGASE
VIENNA, PPI, MDM2, HDM2, BI, Ligase
MDM2_HUMAN
UNP
1
19
Q00987
IPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHRK
IYTMIYRNLVVVN
19
111
5LAV
19
111
Q00987
A
1
1
93
3
2
anti-parallel
anti-parallel
anti-parallel
A
TYR
48
A
TYR
30
A
THR
49
A
THR
31
A
LEU
27
A
LEU
9
A
PRO
30
A
PRO
12
A
LEU
107
A
LEU
89
A
VAL
110
A
VAL
92
A
ILE
74
A
ILE
56
A
TYR
76
A
TYR
58
A
SER
90
A
SER
72
A
SER
92
A
SER
74
binding site for residue 6SK A 201
A
6SK
201
Software
8
binding site for residue SO4 A 202
A
SO4
202
Software
5
A
LEU
54
A
LEU
36
8
1_555
A
MET
62
A
MET
44
8
1_555
A
PHE
86
A
PHE
68
8
1_555
A
VAL
93
A
VAL
75
8
1_555
A
HIS
96
A
HIS
78
8
1_555
A
TYR
100
A
TYR
82
8
1_555
A
HOH
305
D
HOH
8
1_555
A
HOH
309
D
HOH
8
1_555
A
PRO
20
A
PRO
2
5
1_555
A
ALA
21
A
ALA
3
5
1_555
A
LYS
51
A
LYS
33
5
5_554
A
HOH
302
D
HOH
5
5_554
A
HOH
303
D
HOH
5
1_555
178
P 61 2 2