0.013996 0.008080 0.000000 0.000000 0.016161 0.000000 0.000000 0.000000 0.001919 0.000000 0.000000 0.000000 Kessler, D. Gollner, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 72 90.000 90.000 120.000 71.450 71.450 520.977 C27 H26 Cl2 F N3 O2 514.419 (3~{S},3'~{S},4'~{S},5'~{S})-4'-azanyl-6-chloranyl-3'-(3-chloranyl-2-fluoranyl-phenyl)-1'-[(3-ethoxyphenyl)methyl]-5'-methyl-spiro[1~{H}-indole-3,2'-pyrrolidine]-2-one non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US J. Med. Chem. JMCMAR 0151 1520-4804 59 10147 10162 10.1021/acs.jmedchem.6b00900 27775892 Discovery of Novel Spiro[3H-indole-3,2'-pyrrolidin]-2(1H)-one Compounds as Chemically Stable and Orally Active Inhibitors of the MDM2-p53 Interaction. 2016 100.0 1 PIXEL 2013-06-06 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 1.00000 1.0 X06SA SLS 1.00000 SYNCHROTRON SLS BEAMLINE X06SA 11099.000 E3 ubiquitin-protein ligase Mdm2 6.3.2.- TRUNCATED N-TERMINAL DOMAIN 6 nat polymer 92.094 GLYCEROL 5 syn non-polymer 96.063 SULFATE ION 4 syn non-polymer 514.419 (3~{S},3'~{S},4'~{S},5'~{S})-4'-azanyl-6-chloranyl-3'-(3-chloranyl-2-fluoranyl-phenyl)-1'-[(3-ethoxyphenyl)methyl]-5'-methyl-spiro[1~{H}-indole-3,2'-pyrrolidine]-2-one 6 syn non-polymer 18.015 water 98 nat water Double minute 2 protein,Hdm2,Oncoprotein Mdm2,p53-binding protein Mdm2 no no SQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEH RKIYTMIYRNLVVVN SQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEH RKIYTMIYRNLVVVN A,B,C,D,E,F polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human EXTERNAL sample 1 95 9606 Homo sapiens 1 2.990 58.930 VAPOR DIFFUSION, HANGING DROP 4.5 NULL 277 audit_author database_PDB_rev database_PDB_rev_record pdbx_unobs_or_zero_occ_atoms repository Initial release Database references Advisory Data collection Structure summary 1 0 2016-11-02 1 1 2016-12-21 1 2 2019-06-12 _audit_author.name N PDBE Y PDBE 2016-06-15 REL REL GOL GLYCEROL SO4 SULFATE ION 6SS (3~{S},3'~{S},4'~{S},5'~{S})-4'-azanyl-6-chloranyl-3'-(3-chloranyl-2-fluoranyl-phenyl)-1'-[(3-ethoxyphenyl)methyl]-5'-methyl-spiro[1~{H}-indole-3,2'-pyrrolidine]-2-one HOH water GOL 6 2 GOL GOL 201 A GOL 7 2 GOL GOL 202 A GOL 8 2 GOL GOL 203 A SO4 13 3 SO4 SO4 204 A INX 1 4 6SS 6SS 205 A SO4 14 3 SO4 SO4 201 B INX 2 4 6SS 6SS 202 B GOL 5 2 GOL GOL 201 C INX 3 4 6SS 6SS 202 C SO4 12 3 SO4 SO4 201 D INX 4 4 6SS 6SS 202 D GOL 9 2 GOL GOL 201 E SO4 15 3 SO4 SO4 202 E INX 5 4 6SS 6SS 203 E INX 6 4 6SS 6SS 201 F HOH 10 5 HOH HOH 301 A HOH 291 5 HOH HOH 302 A HOH 185 5 HOH HOH 303 A HOH 49 5 HOH HOH 304 A HOH 306 5 HOH HOH 305 A HOH 201 5 HOH HOH 306 A HOH 304 5 HOH HOH 307 A HOH 51 5 HOH HOH 308 A HOH 162 5 HOH HOH 309 A HOH 21 5 HOH HOH 310 A HOH 311 5 HOH HOH 311 A HOH 280 5 HOH HOH 312 A HOH 310 5 HOH HOH 313 A HOH 18 5 HOH HOH 314 A HOH 102 5 HOH HOH 315 A HOH 230 5 HOH HOH 316 A HOH 94 5 HOH HOH 317 A HOH 317 5 HOH HOH 318 A HOH 314 5 HOH HOH 319 A HOH 325 5 HOH HOH 320 A HOH 320 5 HOH HOH 321 A HOH 116 5 HOH HOH 322 A HOH 166 5 HOH HOH 323 A HOH 235 5 HOH HOH 324 A HOH 175 5 HOH HOH 325 A HOH 321 5 HOH HOH 326 A HOH 305 5 HOH HOH 301 B HOH 315 5 HOH HOH 302 B HOH 167 5 HOH HOH 303 B HOH 1 5 HOH HOH 304 B HOH 50 5 HOH HOH 305 B HOH 211 5 HOH HOH 306 B HOH 326 5 HOH HOH 307 B HOH 87 5 HOH HOH 308 B HOH 285 5 HOH HOH 309 B HOH 88 5 HOH HOH 310 B HOH 318 5 HOH HOH 311 B HOH 95 5 HOH HOH 312 B HOH 7 5 HOH HOH 313 B HOH 25 5 HOH HOH 314 B HOH 41 5 HOH HOH 315 B HOH 284 5 HOH HOH 316 B HOH 149 5 HOH HOH 317 B HOH 17 5 HOH HOH 318 B HOH 122 5 HOH HOH 319 B HOH 219 5 HOH HOH 320 B HOH 286 5 HOH HOH 321 B HOH 74 5 HOH HOH 322 B HOH 110 5 HOH HOH 323 B HOH 43 5 HOH HOH 301 C HOH 197 5 HOH HOH 302 C HOH 237 5 HOH HOH 303 C HOH 309 5 HOH HOH 304 C HOH 16 5 HOH HOH 305 C HOH 324 5 HOH HOH 306 C HOH 257 5 HOH HOH 307 C HOH 322 5 HOH HOH 308 C HOH 114 5 HOH HOH 309 C HOH 308 5 HOH HOH 310 C HOH 125 5 HOH HOH 311 C HOH 198 5 HOH HOH 312 C HOH 217 5 HOH HOH 313 C HOH 157 5 HOH HOH 314 C HOH 91 5 HOH HOH 301 D HOH 307 5 HOH HOH 302 D HOH 73 5 HOH HOH 303 D HOH 319 5 HOH HOH 304 D HOH 323 5 HOH HOH 305 D HOH 61 5 HOH HOH 306 D HOH 103 5 HOH HOH 307 D HOH 39 5 HOH HOH 308 D HOH 313 5 HOH HOH 309 D HOH 105 5 HOH HOH 310 D HOH 13 5 HOH HOH 311 D HOH 169 5 HOH HOH 312 D HOH 109 5 HOH HOH 313 D HOH 69 5 HOH HOH 314 D HOH 316 5 HOH HOH 315 D HOH 180 5 HOH HOH 316 D HOH 28 5 HOH HOH 317 D HOH 82 5 HOH HOH 318 D HOH 241 5 HOH HOH 319 D HOH 247 5 HOH HOH 320 D HOH 120 5 HOH HOH 321 D HOH 312 5 HOH HOH 322 D HOH 294 5 HOH HOH 323 D HOH 278 5 HOH HOH 324 D HOH 60 5 HOH HOH 325 D HOH 282 5 HOH HOH 326 D HOH 159 5 HOH HOH 301 E HOH 303 5 HOH HOH 302 E HOH 244 5 HOH HOH 303 E HOH 243 5 HOH HOH 304 E HOH 273 5 HOH HOH 305 E HOH 101 5 HOH HOH 306 E HOH 172 5 HOH HOH 301 F HOH 155 5 HOH HOH 302 F HOH 194 5 HOH HOH 303 F SER 17 n 1 SER 17 A GLN 18 n 2 GLN 18 A ILE 19 n 3 ILE 19 A PRO 20 n 4 PRO 20 A ALA 21 n 5 ALA 21 A SER 22 n 6 SER 22 A GLU 23 n 7 GLU 23 A GLN 24 n 8 GLN 24 A GLU 25 n 9 GLU 25 A THR 26 n 10 THR 26 A LEU 27 n 11 LEU 27 A VAL 28 n 12 VAL 28 A ARG 29 n 13 ARG 29 A PRO 30 n 14 PRO 30 A LYS 31 n 15 LYS 31 A PRO 32 n 16 PRO 32 A LEU 33 n 17 LEU 33 A LEU 34 n 18 LEU 34 A LEU 35 n 19 LEU 35 A LYS 36 n 20 LYS 36 A LEU 37 n 21 LEU 37 A LEU 38 n 22 LEU 38 A LYS 39 n 23 LYS 39 A SER 40 n 24 SER 40 A VAL 41 n 25 VAL 41 A GLY 42 n 26 GLY 42 A ALA 43 n 27 ALA 43 A GLN 44 n 28 GLN 44 A LYS 45 n 29 LYS 45 A ASP 46 n 30 ASP 46 A THR 47 n 31 THR 47 A TYR 48 n 32 TYR 48 A THR 49 n 33 THR 49 A MET 50 n 34 MET 50 A LYS 51 n 35 LYS 51 A GLU 52 n 36 GLU 52 A VAL 53 n 37 VAL 53 A LEU 54 n 38 LEU 54 A PHE 55 n 39 PHE 55 A TYR 56 n 40 TYR 56 A LEU 57 n 41 LEU 57 A GLY 58 n 42 GLY 58 A GLN 59 n 43 GLN 59 A TYR 60 n 44 TYR 60 A ILE 61 n 45 ILE 61 A MET 62 n 46 MET 62 A THR 63 n 47 THR 63 A LYS 64 n 48 LYS 64 A ARG 65 n 49 ARG 65 A LEU 66 n 50 LEU 66 A TYR 67 n 51 TYR 67 A ASP 68 n 52 ASP 68 A GLU 69 n 53 GLU 69 A LYS 70 n 54 LYS 70 A GLN 71 n 55 GLN 71 A GLN 72 n 56 GLN 72 A HIS 73 n 57 HIS 73 A ILE 74 n 58 ILE 74 A VAL 75 n 59 VAL 75 A TYR 76 n 60 TYR 76 A CYS 77 n 61 CYS 77 A SER 78 n 62 SER 78 A ASN 79 n 63 ASN 79 A ASP 80 n 64 ASP 80 A LEU 81 n 65 LEU 81 A LEU 82 n 66 LEU 82 A GLY 83 n 67 GLY 83 A ASP 84 n 68 ASP 84 A LEU 85 n 69 LEU 85 A PHE 86 n 70 PHE 86 A GLY 87 n 71 GLY 87 A VAL 88 n 72 VAL 88 A PRO 89 n 73 PRO 89 A SER 90 n 74 SER 90 A PHE 91 n 75 PHE 91 A SER 92 n 76 SER 92 A VAL 93 n 77 VAL 93 A LYS 94 n 78 LYS 94 A GLU 95 n 79 GLU 95 A HIS 96 n 80 HIS 96 A ARG 97 n 81 ARG 97 A LYS 98 n 82 LYS 98 A ILE 99 n 83 ILE 99 A TYR 100 n 84 TYR 100 A THR 101 n 85 THR 101 A MET 102 n 86 MET 102 A ILE 103 n 87 ILE 103 A TYR 104 n 88 TYR 104 A ARG 105 n 89 ARG 105 A ASN 106 n 90 ASN 106 A LEU 107 n 91 LEU 107 A VAL 108 n 92 VAL 108 A VAL 109 n 93 VAL 109 A VAL 110 n 94 VAL 110 A ASN 111 n 95 ASN 111 A n 1 17 B GLN 18 n 2 GLN 18 B ILE 19 n 3 ILE 19 B PRO 20 n 4 PRO 20 B ALA 21 n 5 ALA 21 B SER 22 n 6 SER 22 B GLU 23 n 7 GLU 23 B GLN 24 n 8 GLN 24 B GLU 25 n 9 GLU 25 B THR 26 n 10 THR 26 B LEU 27 n 11 LEU 27 B VAL 28 n 12 VAL 28 B ARG 29 n 13 ARG 29 B PRO 30 n 14 PRO 30 B LYS 31 n 15 LYS 31 B PRO 32 n 16 PRO 32 B LEU 33 n 17 LEU 33 B LEU 34 n 18 LEU 34 B LEU 35 n 19 LEU 35 B LYS 36 n 20 LYS 36 B LEU 37 n 21 LEU 37 B LEU 38 n 22 LEU 38 B LYS 39 n 23 LYS 39 B SER 40 n 24 SER 40 B VAL 41 n 25 VAL 41 B GLY 42 n 26 GLY 42 B ALA 43 n 27 ALA 43 B GLN 44 n 28 GLN 44 B LYS 45 n 29 LYS 45 B ASP 46 n 30 ASP 46 B THR 47 n 31 THR 47 B TYR 48 n 32 TYR 48 B THR 49 n 33 THR 49 B MET 50 n 34 MET 50 B LYS 51 n 35 LYS 51 B GLU 52 n 36 GLU 52 B VAL 53 n 37 VAL 53 B LEU 54 n 38 LEU 54 B PHE 55 n 39 PHE 55 B TYR 56 n 40 TYR 56 B LEU 57 n 41 LEU 57 B GLY 58 n 42 GLY 58 B GLN 59 n 43 GLN 59 B TYR 60 n 44 TYR 60 B ILE 61 n 45 ILE 61 B MET 62 n 46 MET 62 B THR 63 n 47 THR 63 B LYS 64 n 48 LYS 64 B ARG 65 n 49 ARG 65 B LEU 66 n 50 LEU 66 B TYR 67 n 51 TYR 67 B ASP 68 n 52 ASP 68 B GLU 69 n 53 GLU 69 B LYS 70 n 54 LYS 70 B GLN 71 n 55 GLN 71 B GLN 72 n 56 GLN 72 B HIS 73 n 57 HIS 73 B ILE 74 n 58 ILE 74 B VAL 75 n 59 VAL 75 B TYR 76 n 60 TYR 76 B CYS 77 n 61 CYS 77 B SER 78 n 62 SER 78 B ASN 79 n 63 ASN 79 B ASP 80 n 64 ASP 80 B LEU 81 n 65 LEU 81 B LEU 82 n 66 LEU 82 B GLY 83 n 67 GLY 83 B ASP 84 n 68 ASP 84 B LEU 85 n 69 LEU 85 B PHE 86 n 70 PHE 86 B GLY 87 n 71 GLY 87 B VAL 88 n 72 VAL 88 B PRO 89 n 73 PRO 89 B SER 90 n 74 SER 90 B PHE 91 n 75 PHE 91 B SER 92 n 76 SER 92 B VAL 93 n 77 VAL 93 B LYS 94 n 78 LYS 94 B GLU 95 n 79 GLU 95 B HIS 96 n 80 HIS 96 B ARG 97 n 81 ARG 97 B LYS 98 n 82 LYS 98 B ILE 99 n 83 ILE 99 B TYR 100 n 84 TYR 100 B THR 101 n 85 THR 101 B MET 102 n 86 MET 102 B ILE 103 n 87 ILE 103 B TYR 104 n 88 TYR 104 B ARG 105 n 89 ARG 105 B ASN 106 n 90 ASN 106 B LEU 107 n 91 LEU 107 B VAL 108 n 92 VAL 108 B VAL 109 n 93 VAL 109 B VAL 110 n 94 VAL 110 B ASN 111 n 95 ASN 111 B n 1 17 C GLN 18 n 2 GLN 18 C ILE 19 n 3 ILE 19 C PRO 20 n 4 PRO 20 C ALA 21 n 5 ALA 21 C SER 22 n 6 SER 22 C GLU 23 n 7 GLU 23 C GLN 24 n 8 GLN 24 C GLU 25 n 9 GLU 25 C THR 26 n 10 THR 26 C LEU 27 n 11 LEU 27 C VAL 28 n 12 VAL 28 C ARG 29 n 13 ARG 29 C PRO 30 n 14 PRO 30 C LYS 31 n 15 LYS 31 C PRO 32 n 16 PRO 32 C LEU 33 n 17 LEU 33 C LEU 34 n 18 LEU 34 C LEU 35 n 19 LEU 35 C LYS 36 n 20 LYS 36 C LEU 37 n 21 LEU 37 C LEU 38 n 22 LEU 38 C LYS 39 n 23 LYS 39 C SER 40 n 24 SER 40 C VAL 41 n 25 VAL 41 C GLY 42 n 26 GLY 42 C ALA 43 n 27 ALA 43 C GLN 44 n 28 GLN 44 C LYS 45 n 29 LYS 45 C ASP 46 n 30 ASP 46 C THR 47 n 31 THR 47 C TYR 48 n 32 TYR 48 C THR 49 n 33 THR 49 C MET 50 n 34 MET 50 C LYS 51 n 35 LYS 51 C GLU 52 n 36 GLU 52 C VAL 53 n 37 VAL 53 C LEU 54 n 38 LEU 54 C PHE 55 n 39 PHE 55 C TYR 56 n 40 TYR 56 C LEU 57 n 41 LEU 57 C GLY 58 n 42 GLY 58 C GLN 59 n 43 GLN 59 C TYR 60 n 44 TYR 60 C ILE 61 n 45 ILE 61 C MET 62 n 46 MET 62 C THR 63 n 47 THR 63 C LYS 64 n 48 LYS 64 C ARG 65 n 49 ARG 65 C LEU 66 n 50 LEU 66 C TYR 67 n 51 TYR 67 C ASP 68 n 52 ASP 68 C GLU 69 n 53 GLU 69 C LYS 70 n 54 LYS 70 C GLN 71 n 55 GLN 71 C GLN 72 n 56 GLN 72 C HIS 73 n 57 HIS 73 C ILE 74 n 58 ILE 74 C VAL 75 n 59 VAL 75 C TYR 76 n 60 TYR 76 C CYS 77 n 61 CYS 77 C SER 78 n 62 SER 78 C ASN 79 n 63 ASN 79 C ASP 80 n 64 ASP 80 C LEU 81 n 65 LEU 81 C LEU 82 n 66 LEU 82 C GLY 83 n 67 GLY 83 C ASP 84 n 68 ASP 84 C LEU 85 n 69 LEU 85 C PHE 86 n 70 PHE 86 C GLY 87 n 71 GLY 87 C VAL 88 n 72 VAL 88 C PRO 89 n 73 PRO 89 C SER 90 n 74 SER 90 C PHE 91 n 75 PHE 91 C SER 92 n 76 SER 92 C VAL 93 n 77 VAL 93 C LYS 94 n 78 LYS 94 C GLU 95 n 79 GLU 95 C HIS 96 n 80 HIS 96 C ARG 97 n 81 ARG 97 C LYS 98 n 82 LYS 98 C ILE 99 n 83 ILE 99 C TYR 100 n 84 TYR 100 C THR 101 n 85 THR 101 C MET 102 n 86 MET 102 C ILE 103 n 87 ILE 103 C TYR 104 n 88 TYR 104 C ARG 105 n 89 ARG 105 C ASN 106 n 90 ASN 106 C LEU 107 n 91 LEU 107 C VAL 108 n 92 VAL 108 C VAL 109 n 93 VAL 109 C VAL 110 n 94 VAL 110 C ASN 111 n 95 ASN 111 C SER 17 n 1 SER 17 D GLN 18 n 2 GLN 18 D ILE 19 n 3 ILE 19 D PRO 20 n 4 PRO 20 D ALA 21 n 5 ALA 21 D SER 22 n 6 SER 22 D GLU 23 n 7 GLU 23 D GLN 24 n 8 GLN 24 D GLU 25 n 9 GLU 25 D THR 26 n 10 THR 26 D LEU 27 n 11 LEU 27 D VAL 28 n 12 VAL 28 D ARG 29 n 13 ARG 29 D PRO 30 n 14 PRO 30 D LYS 31 n 15 LYS 31 D PRO 32 n 16 PRO 32 D LEU 33 n 17 LEU 33 D LEU 34 n 18 LEU 34 D LEU 35 n 19 LEU 35 D LYS 36 n 20 LYS 36 D LEU 37 n 21 LEU 37 D LEU 38 n 22 LEU 38 D LYS 39 n 23 LYS 39 D SER 40 n 24 SER 40 D VAL 41 n 25 VAL 41 D GLY 42 n 26 GLY 42 D ALA 43 n 27 ALA 43 D GLN 44 n 28 GLN 44 D LYS 45 n 29 LYS 45 D ASP 46 n 30 ASP 46 D THR 47 n 31 THR 47 D TYR 48 n 32 TYR 48 D THR 49 n 33 THR 49 D MET 50 n 34 MET 50 D LYS 51 n 35 LYS 51 D GLU 52 n 36 GLU 52 D VAL 53 n 37 VAL 53 D LEU 54 n 38 LEU 54 D PHE 55 n 39 PHE 55 D TYR 56 n 40 TYR 56 D LEU 57 n 41 LEU 57 D GLY 58 n 42 GLY 58 D GLN 59 n 43 GLN 59 D TYR 60 n 44 TYR 60 D ILE 61 n 45 ILE 61 D MET 62 n 46 MET 62 D THR 63 n 47 THR 63 D LYS 64 n 48 LYS 64 D ARG 65 n 49 ARG 65 D LEU 66 n 50 LEU 66 D TYR 67 n 51 TYR 67 D ASP 68 n 52 ASP 68 D GLU 69 n 53 GLU 69 D LYS 70 n 54 LYS 70 D GLN 71 n 55 GLN 71 D GLN 72 n 56 GLN 72 D HIS 73 n 57 HIS 73 D ILE 74 n 58 ILE 74 D VAL 75 n 59 VAL 75 D TYR 76 n 60 TYR 76 D CYS 77 n 61 CYS 77 D SER 78 n 62 SER 78 D ASN 79 n 63 ASN 79 D ASP 80 n 64 ASP 80 D LEU 81 n 65 LEU 81 D LEU 82 n 66 LEU 82 D GLY 83 n 67 GLY 83 D ASP 84 n 68 ASP 84 D LEU 85 n 69 LEU 85 D PHE 86 n 70 PHE 86 D GLY 87 n 71 GLY 87 D VAL 88 n 72 VAL 88 D PRO 89 n 73 PRO 89 D SER 90 n 74 SER 90 D PHE 91 n 75 PHE 91 D SER 92 n 76 SER 92 D VAL 93 n 77 VAL 93 D LYS 94 n 78 LYS 94 D GLU 95 n 79 GLU 95 D HIS 96 n 80 HIS 96 D ARG 97 n 81 ARG 97 D LYS 98 n 82 LYS 98 D ILE 99 n 83 ILE 99 D TYR 100 n 84 TYR 100 D THR 101 n 85 THR 101 D MET 102 n 86 MET 102 D ILE 103 n 87 ILE 103 D TYR 104 n 88 TYR 104 D ARG 105 n 89 ARG 105 D ASN 106 n 90 ASN 106 D LEU 107 n 91 LEU 107 D VAL 108 n 92 VAL 108 D VAL 109 n 93 VAL 109 D VAL 110 n 94 VAL 110 D n 95 111 D n 1 17 E GLN 18 n 2 GLN 18 E ILE 19 n 3 ILE 19 E PRO 20 n 4 PRO 20 E ALA 21 n 5 ALA 21 E SER 22 n 6 SER 22 E GLU 23 n 7 GLU 23 E GLN 24 n 8 GLN 24 E GLU 25 n 9 GLU 25 E THR 26 n 10 THR 26 E LEU 27 n 11 LEU 27 E VAL 28 n 12 VAL 28 E ARG 29 n 13 ARG 29 E PRO 30 n 14 PRO 30 E LYS 31 n 15 LYS 31 E PRO 32 n 16 PRO 32 E LEU 33 n 17 LEU 33 E LEU 34 n 18 LEU 34 E LEU 35 n 19 LEU 35 E LYS 36 n 20 LYS 36 E LEU 37 n 21 LEU 37 E LEU 38 n 22 LEU 38 E LYS 39 n 23 LYS 39 E SER 40 n 24 SER 40 E VAL 41 n 25 VAL 41 E GLY 42 n 26 GLY 42 E ALA 43 n 27 ALA 43 E GLN 44 n 28 GLN 44 E LYS 45 n 29 LYS 45 E ASP 46 n 30 ASP 46 E THR 47 n 31 THR 47 E TYR 48 n 32 TYR 48 E THR 49 n 33 THR 49 E MET 50 n 34 MET 50 E LYS 51 n 35 LYS 51 E GLU 52 n 36 GLU 52 E VAL 53 n 37 VAL 53 E LEU 54 n 38 LEU 54 E PHE 55 n 39 PHE 55 E TYR 56 n 40 TYR 56 E LEU 57 n 41 LEU 57 E GLY 58 n 42 GLY 58 E GLN 59 n 43 GLN 59 E TYR 60 n 44 TYR 60 E ILE 61 n 45 ILE 61 E MET 62 n 46 MET 62 E THR 63 n 47 THR 63 E LYS 64 n 48 LYS 64 E ARG 65 n 49 ARG 65 E LEU 66 n 50 LEU 66 E TYR 67 n 51 TYR 67 E ASP 68 n 52 ASP 68 E GLU 69 n 53 GLU 69 E LYS 70 n 54 LYS 70 E GLN 71 n 55 GLN 71 E GLN 72 n 56 GLN 72 E HIS 73 n 57 HIS 73 E ILE 74 n 58 ILE 74 E VAL 75 n 59 VAL 75 E TYR 76 n 60 TYR 76 E CYS 77 n 61 CYS 77 E SER 78 n 62 SER 78 E ASN 79 n 63 ASN 79 E ASP 80 n 64 ASP 80 E LEU 81 n 65 LEU 81 E LEU 82 n 66 LEU 82 E GLY 83 n 67 GLY 83 E ASP 84 n 68 ASP 84 E LEU 85 n 69 LEU 85 E PHE 86 n 70 PHE 86 E GLY 87 n 71 GLY 87 E VAL 88 n 72 VAL 88 E PRO 89 n 73 PRO 89 E SER 90 n 74 SER 90 E PHE 91 n 75 PHE 91 E SER 92 n 76 SER 92 E VAL 93 n 77 VAL 93 E LYS 94 n 78 LYS 94 E GLU 95 n 79 GLU 95 E HIS 96 n 80 HIS 96 E ARG 97 n 81 ARG 97 E LYS 98 n 82 LYS 98 E ILE 99 n 83 ILE 99 E TYR 100 n 84 TYR 100 E THR 101 n 85 THR 101 E MET 102 n 86 MET 102 E ILE 103 n 87 ILE 103 E TYR 104 n 88 TYR 104 E ARG 105 n 89 ARG 105 E ASN 106 n 90 ASN 106 E LEU 107 n 91 LEU 107 E VAL 108 n 92 VAL 108 E VAL 109 n 93 VAL 109 E VAL 110 n 94 VAL 110 E ASN 111 n 95 ASN 111 E n 1 17 F n 2 18 F n 3 19 F n 4 20 F n 5 21 F n 6 22 F GLU 23 n 7 GLU 23 F GLN 24 n 8 GLN 24 F GLU 25 n 9 GLU 25 F THR 26 n 10 THR 26 F LEU 27 n 11 LEU 27 F VAL 28 n 12 VAL 28 F ARG 29 n 13 ARG 29 F PRO 30 n 14 PRO 30 F LYS 31 n 15 LYS 31 F PRO 32 n 16 PRO 32 F LEU 33 n 17 LEU 33 F LEU 34 n 18 LEU 34 F LEU 35 n 19 LEU 35 F LYS 36 n 20 LYS 36 F LEU 37 n 21 LEU 37 F LEU 38 n 22 LEU 38 F LYS 39 n 23 LYS 39 F SER 40 n 24 SER 40 F VAL 41 n 25 VAL 41 F GLY 42 n 26 GLY 42 F ALA 43 n 27 ALA 43 F GLN 44 n 28 GLN 44 F LYS 45 n 29 LYS 45 F ASP 46 n 30 ASP 46 F THR 47 n 31 THR 47 F TYR 48 n 32 TYR 48 F THR 49 n 33 THR 49 F MET 50 n 34 MET 50 F LYS 51 n 35 LYS 51 F GLU 52 n 36 GLU 52 F VAL 53 n 37 VAL 53 F LEU 54 n 38 LEU 54 F PHE 55 n 39 PHE 55 F TYR 56 n 40 TYR 56 F LEU 57 n 41 LEU 57 F GLY 58 n 42 GLY 58 F GLN 59 n 43 GLN 59 F TYR 60 n 44 TYR 60 F ILE 61 n 45 ILE 61 F MET 62 n 46 MET 62 F THR 63 n 47 THR 63 F LYS 64 n 48 LYS 64 F ARG 65 n 49 ARG 65 F LEU 66 n 50 LEU 66 F TYR 67 n 51 TYR 67 F ASP 68 n 52 ASP 68 F GLU 69 n 53 GLU 69 F LYS 70 n 54 LYS 70 F GLN 71 n 55 GLN 71 F GLN 72 n 56 GLN 72 F HIS 73 n 57 HIS 73 F ILE 74 n 58 ILE 74 F VAL 75 n 59 VAL 75 F TYR 76 n 60 TYR 76 F CYS 77 n 61 CYS 77 F SER 78 n 62 SER 78 F ASN 79 n 63 ASN 79 F ASP 80 n 64 ASP 80 F LEU 81 n 65 LEU 81 F LEU 82 n 66 LEU 82 F GLY 83 n 67 GLY 83 F ASP 84 n 68 ASP 84 F LEU 85 n 69 LEU 85 F PHE 86 n 70 PHE 86 F GLY 87 n 71 GLY 87 F VAL 88 n 72 VAL 88 F PRO 89 n 73 PRO 89 F SER 90 n 74 SER 90 F PHE 91 n 75 PHE 91 F SER 92 n 76 SER 92 F n 77 93 F n 78 94 F GLU 95 n 79 GLU 95 F HIS 96 n 80 HIS 96 F ARG 97 n 81 ARG 97 F LYS 98 n 82 LYS 98 F ILE 99 n 83 ILE 99 F TYR 100 n 84 TYR 100 F THR 101 n 85 THR 101 F MET 102 n 86 MET 102 F ILE 103 n 87 ILE 103 F TYR 104 n 88 TYR 104 F ARG 105 n 89 ARG 105 F n 90 106 F n 91 107 F n 92 108 F n 93 109 F n 94 110 F n 95 111 F author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 48 A O TYR 32 A N VAL 28 A N VAL 12 A N ARG 29 A N ARG 13 A O VAL 108 A O VAL 92 A N VAL 75 A N VAL 59 A O PHE 91 A O PHE 75 B O TYR 48 B O TYR 32 B N VAL 28 B N VAL 12 B N ARG 29 B N ARG 13 B O VAL 108 B O VAL 92 B N ASP 68 B N ASP 52 B O GLN 71 B O GLN 55 B N VAL 75 B N VAL 59 B O PHE 91 B O PHE 75 C O TYR 48 C O TYR 32 C N VAL 28 C N VAL 12 C N ARG 29 C N ARG 13 C O VAL 108 C O VAL 92 C N VAL 75 C N VAL 59 C O PHE 91 C O PHE 75 D N VAL 28 D N VAL 12 D O TYR 48 D O TYR 32 D N VAL 75 D N VAL 59 D O PHE 91 D O PHE 75 E O TYR 48 E O TYR 32 E N VAL 28 E N VAL 12 E N ARG 29 E N ARG 13 E O VAL 108 E O VAL 92 E N VAL 75 E N VAL 59 E O PHE 91 E O PHE 75 F N VAL 28 F N VAL 12 F O TYR 48 F O TYR 32 F N VAL 75 F N VAL 59 F O PHE 91 F O PHE 75 1 B SER 17 B SER 1 1 Y 1 C SER 17 C SER 1 1 Y 1 D ASN 111 D ASN 95 1 Y 1 E SER 17 E SER 1 1 Y 1 F SER 17 F SER 1 1 Y 1 F GLN 18 F GLN 2 1 Y 1 F ILE 19 F ILE 3 1 Y 1 F PRO 20 F PRO 4 1 Y 1 F ALA 21 F ALA 5 1 Y 1 F SER 22 F SER 6 1 Y 1 F VAL 93 F VAL 77 1 Y 1 F LYS 94 F LYS 78 1 Y 1 F ASN 106 F ASN 90 1 Y 1 F LEU 107 F LEU 91 1 Y 1 F VAL 108 F VAL 92 1 Y 1 F VAL 109 F VAL 93 1 Y 1 F VAL 110 F VAL 94 1 Y 1 F ASN 111 F ASN 95 1 Y 1 6.65 0.60 121.00 127.65 F F F CB CG CD2 TYR TYR TYR 104 104 104 N 1 -6.68 0.60 121.00 114.32 F F F CB CG CD1 TYR TYR TYR 104 104 104 N 1 F F CG CD2 TYR TYR 104 104 -0.094 0.013 1.387 1.293 N 1 F F CG CD1 TYR TYR 104 104 0.115 0.013 1.387 1.502 N 1 A LEU 66 -90.84 47.23 1 C LEU 66 -81.76 46.93 1 C CYS 77 -141.07 23.41 1 D LEU 66 -82.00 49.36 1 F HIS 73 -128.20 -56.31 78.450 6.6640 2.000 0.4600 0.2300 0.0000 0.4600 0.0000 -0.7000 0.8700 0.8260 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : RESIDUAL ONLY 0.2917 0.2506 0.2521 2.7100 87.4500 806 21885 3.6000 98.9600 30.5990 0.3140 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.8740 0.3730 0.8000 0.8000 1.2000 2.7100 87.4500 98 4905 14.87 20.44 260 0 4547 552 0.008 0.020 4741 0.001 0.020 3244 1.132 2.052 6464 1.373 3.000 7823 5.334 5.000 555 39.002 23.779 172 13.639 15.000 791 13.838 15.000 19 0.057 0.200 742 0.004 0.021 5054 0.001 0.020 941 0.3750 0.3240 2.7800 51 1304 1355 20 99.5600 2.700 87.450 5LAY 22692 0.000 0.163 1 11.89 6.200 99.000 2.710 2.960 0.448 1 6.700 99.600 refinement REFMAC 5.6.0117 data extraction PDB_EXTRACT 3.20 data reduction XDS data scaling XSCALE phasing REFMAC N E3 ubiquitin-protein ligase Mdm2 (E.C.6.3.2.-) Discovery of New Natural-product-inspired Spiro-oxindole Compounds as Orally Active Inhibitors of the MDM2-p53 Interaction: HDM2 (MDM2) IN COMPLEX WITH COMPOUND 6g 1 N N 1 N N 1 N N 1 N N 1 N N 1 N N 2 N N 2 N N 2 N N 3 N N 4 N N 3 N N 4 N N 2 N N 4 N N 3 N N 4 N N 2 N N 3 N N 4 N N 4 N N 5 N N 5 N N 5 N N 5 N N 5 N N 5 N N A PRO 20 A PRO 4 HELX_P A GLU 25 A GLU 9 1 AA1 6 A LYS 31 A LYS 15 HELX_P A VAL 41 A VAL 25 1 AA2 11 A MET 50 A MET 34 HELX_P A LYS 64 A LYS 48 1 AA3 15 A ASP 80 A ASP 64 HELX_P A GLY 87 A GLY 71 1 AA4 8 A GLU 95 A GLU 79 HELX_P A ARG 105 A ARG 89 1 AA5 11 B PRO 20 B PRO 4 HELX_P B THR 26 B THR 10 1 AA6 7 B LYS 31 B LYS 15 HELX_P B VAL 41 B VAL 25 1 AA7 11 B MET 50 B MET 34 HELX_P B LYS 64 B LYS 48 1 AA8 15 B ASP 80 B ASP 64 HELX_P B GLY 87 B GLY 71 1 AA9 8 B GLU 95 B GLU 79 HELX_P B ASN 106 B ASN 90 1 AB1 12 C PRO 20 C PRO 4 HELX_P C GLU 25 C GLU 9 1 AB2 6 C LYS 31 C LYS 15 HELX_P C SER 40 C SER 24 1 AB3 10 C MET 50 C MET 34 HELX_P C ARG 65 C ARG 49 1 AB4 16 C ASP 80 C ASP 64 HELX_P C GLY 87 C GLY 71 1 AB5 8 C GLU 95 C GLU 79 HELX_P C ARG 105 C ARG 89 1 AB6 11 D PRO 20 D PRO 4 HELX_P D THR 26 D THR 10 1 AB7 7 D LYS 31 D LYS 15 HELX_P D SER 40 D SER 24 1 AB8 10 D MET 50 D MET 34 HELX_P D ARG 65 D ARG 49 1 AB9 16 D ASP 80 D ASP 64 HELX_P D GLY 87 D GLY 71 1 AC1 8 D GLU 95 D GLU 79 HELX_P D ARG 105 D ARG 89 1 AC2 11 E PRO 20 E PRO 4 HELX_P E THR 26 E THR 10 1 AC3 7 E LYS 31 E LYS 15 HELX_P E SER 40 E SER 24 1 AC4 10 E MET 50 E MET 34 HELX_P E ARG 65 E ARG 49 1 AC5 16 E ASP 80 E ASP 64 HELX_P E GLY 87 E GLY 71 1 AC6 8 E GLU 95 E GLU 79 HELX_P E ASN 106 E ASN 90 1 AC7 12 F LYS 31 F LYS 15 HELX_P F SER 40 F SER 24 1 AC8 10 F MET 50 F MET 34 HELX_P F ARG 65 F ARG 49 1 AC9 16 F ASP 80 F ASP 64 HELX_P F GLY 87 F GLY 71 1 AD1 8 F HIS 96 F HIS 80 HELX_P F ARG 105 F ARG 89 1 AD2 10 LIGASE VIENNA, PPI, MDM2, HDM2, BI, LIGASE MDM2_HUMAN UNP 1 17 Q00987 SQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEH RKIYTMIYRNLVVVN 17 111 5LAY 17 111 Q00987 A 1 1 95 17 111 5LAY 17 111 Q00987 B 1 1 95 17 111 5LAY 17 111 Q00987 C 1 1 95 17 111 5LAY 17 111 Q00987 D 1 1 95 17 111 5LAY 17 111 Q00987 E 1 1 95 17 111 5LAY 17 111 Q00987 F 1 1 95 3 2 3 3 3 2 2 2 3 2 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A TYR 48 A TYR 32 A THR 49 A THR 33 A LEU 27 A LEU 11 A PRO 30 A PRO 14 A LEU 107 A LEU 91 A VAL 109 A VAL 93 A ILE 74 A ILE 58 A TYR 76 A TYR 60 A SER 90 A SER 74 A SER 92 A SER 76 B TYR 48 B TYR 32 B THR 49 B THR 33 B LEU 27 B LEU 11 B PRO 30 B PRO 14 B LEU 107 B LEU 91 B VAL 109 B VAL 93 B TYR 67 B TYR 51 B ASP 68 B ASP 52 B GLN 71 B GLN 55 B TYR 76 B TYR 60 B SER 90 B SER 74 B SER 92 B SER 76 C TYR 48 C TYR 32 C THR 49 C THR 33 C LEU 27 C LEU 11 C PRO 30 C PRO 14 C LEU 107 C LEU 91 C VAL 109 C VAL 93 C ILE 74 C ILE 58 C TYR 76 C TYR 60 C SER 90 C SER 74 C SER 92 C SER 76 D LEU 27 D LEU 11 D VAL 28 D VAL 12 D TYR 48 D TYR 32 D THR 49 D THR 33 D ILE 74 D ILE 58 D TYR 76 D TYR 60 D SER 90 D SER 74 D SER 92 D SER 76 E TYR 48 E TYR 32 E THR 49 E THR 33 E LEU 27 E LEU 11 E PRO 30 E PRO 14 E LEU 107 E LEU 91 E VAL 109 E VAL 93 E ILE 74 E ILE 58 E TYR 76 E TYR 60 E SER 90 E SER 74 E SER 92 E SER 76 F LEU 27 F LEU 11 F VAL 28 F VAL 12 F TYR 48 F TYR 32 F THR 49 F THR 33 F VAL 75 F VAL 59 F TYR 76 F TYR 60 F SER 90 F SER 74 F PHE 91 F PHE 75 binding site for residue GOL A 201 A GOL 201 Software 3 binding site for residue GOL A 202 A GOL 202 Software 4 binding site for residue GOL A 203 A GOL 203 Software 5 binding site for residue SO4 A 204 A SO4 204 Software 5 binding site for residue 6SS A 205 A 6SS 205 Software 12 binding site for residue SO4 B 201 B SO4 201 Software 2 binding site for residue 6SS B 202 B 6SS 202 Software 10 binding site for residue GOL C 201 C GOL 201 Software 5 binding site for residue 6SS C 202 C 6SS 202 Software 12 binding site for residue SO4 D 201 D SO4 201 Software 5 binding site for residue 6SS D 202 D 6SS 202 Software 11 binding site for residue GOL E 201 E GOL 201 Software 1 binding site for residue SO4 E 202 E SO4 202 Software 3 binding site for residue 6SS E 203 E 6SS 203 Software 9 binding site for residue 6SS F 201 F 6SS 201 Software 7 A GLN 71 A GLN 55 3 1_555 A GLN 72 A GLN 56 3 1_555 A HIS 73 A HIS 57 3 1_555 A PRO 20 A PRO 4 4 1_555 A ALA 21 A ALA 5 4 1_555 A SER 22 A SER 6 4 1_555 A LYS 36 A LYS 20 4 8_445 A LYS 45 A LYS 29 5 1_555 A GLU 52 A GLU 36 5 1_555 A HOH 316 V HOH 5 1_555 B THR 26 B THR 10 5 8_445 B TYR 104 B TYR 88 5 8_445 A SER 17 A SER 1 5 1_555 A GLN 18 A GLN 2 5 1_555 A ILE 19 A ILE 3 5 1_555 A GLN 24 A GLN 8 5 1_555 A HIS 96 A HIS 80 5 1_555 A LEU 54 A LEU 38 12 1_555 A GLY 58 A GLY 42 12 1_555 A ILE 61 A ILE 45 12 1_555 A TYR 67 A TYR 51 12 1_555 A GLN 72 A GLN 56 12 1_555 A PHE 86 A PHE 70 12 1_555 A VAL 93 A VAL 77 12 1_555 A HIS 96 A HIS 80 12 1_555 A ILE 99 A ILE 83 12 1_555 A HOH 302 V HOH 12 1_555 C GLU 69 C GLU 53 12 1_555 C GLN 72 C GLN 56 12 1_555 B ASP 46 B ASP 30 2 1_555 B THR 47 B THR 31 2 1_555 B LEU 54 B LEU 38 10 1_555 B GLY 58 B GLY 42 10 1_555 B ILE 61 B ILE 45 10 1_555 B MET 62 B MET 46 10 1_555 B TYR 67 B TYR 51 10 1_555 B GLN 72 B GLN 56 10 1_555 B PHE 86 B PHE 70 10 1_555 B VAL 93 B VAL 77 10 1_555 B HIS 96 B HIS 80 10 1_555 B ILE 99 B ILE 83 10 1_555 C GLN 18 C GLN 2 5 1_555 C ILE 19 C ILE 3 5 1_555 C GLN 24 C GLN 8 5 1_555 C HIS 96 C HIS 80 5 1_555 C 6SS 202 O 6SS 5 1_555 C LEU 54 C LEU 38 12 1_555 C GLY 58 C GLY 42 12 1_555 C ILE 61 C ILE 45 12 1_555 C MET 62 C MET 46 12 1_555 C TYR 67 C TYR 51 12 1_555 C GLN 72 C GLN 56 12 1_555 C PHE 86 C PHE 70 12 1_555 C VAL 93 C VAL 77 12 1_555 C HIS 96 C HIS 80 12 1_555 C ILE 99 C ILE 83 12 1_555 C GOL 201 N GOL 12 1_555 C HOH 307 X HOH 12 1_555 D SER 17 D SER 1 5 1_555 D GLN 18 D GLN 2 5 1_555 D ILE 19 D ILE 3 5 1_555 D GLN 24 D GLN 8 5 1_555 D HIS 96 D HIS 80 5 1_555 D LEU 54 D LEU 38 11 1_555 D GLY 58 D GLY 42 11 1_555 D ILE 61 D ILE 45 11 1_555 D MET 62 D MET 46 11 1_555 D TYR 67 D TYR 51 11 1_555 D GLN 72 D GLN 56 11 1_555 D PHE 86 D PHE 70 11 1_555 D VAL 93 D VAL 77 11 1_555 D HIS 96 D HIS 80 11 1_555 D ILE 99 D ILE 83 11 1_555 D HOH 305 Y HOH 11 1_555 E 6SS 203 T 6SS 1 1_555 E LYS 45 E LYS 29 3 1_555 E ASP 46 E ASP 30 3 1_555 E THR 47 E THR 31 3 1_555 E LEU 54 E LEU 38 9 1_555 E GLY 58 E GLY 42 9 1_555 E ILE 61 E ILE 45 9 1_555 E TYR 67 E TYR 51 9 1_555 E PHE 86 E PHE 70 9 1_555 E VAL 93 E VAL 77 9 1_555 E HIS 96 E HIS 80 9 1_555 E ILE 99 E ILE 83 9 1_555 E GOL 201 R GOL 9 1_555 F LEU 54 F LEU 38 7 1_555 F GLY 58 F GLY 42 7 1_555 F ILE 61 F ILE 45 7 1_555 F MET 62 F MET 46 7 1_555 F TYR 67 F TYR 51 7 1_555 F HIS 96 F HIS 80 7 1_555 F ILE 99 F ILE 83 7 1_555 179 P 65 2 2