0.030204
0.000000
0.000000
0.000000
0.017844
0.000000
0.000000
0.000000
0.016520
0.00000
0.00000
0.00000
Zhang, R.
Nifantiev, N.E.
Krylov, V.
Luetteke, T.
Scheidig, A.J.
Siebert, H.-C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
33.108
56.040
60.531
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-galactopyranose
alpha-D-galactose; D-galactose; galactose; ALPHA D-GALACTOSE
D-saccharide, alpha linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H12 O6
180.156
beta-D-galactofuranose
beta-D-galactose; D-galactose; galactose
D-saccharide, beta linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H18 O6
222.236
n
propyl beta-D-galactofuranoside
D-saccharide
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
S
C
N
90
R
C
N
91
S
C
N
92
R
C
N
93
R
C
N
94
N
C
N
95
N
O
N
96
N
O
N
97
N
O
N
98
N
O
N
99
N
O
N
100
N
O
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
S
C
N
115
N
C
N
116
N
O
N
117
N
C
N
118
N
C
N
119
N
C
N
120
N
O
N
121
N
N
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
N
N
134
S
C
N
135
N
C
N
136
N
O
N
137
N
C
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
O
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
N
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
C
N
163
S
C
N
164
S
C
N
165
S
C
N
166
R
C
N
167
N
O
N
168
N
O
N
169
N
O
N
170
N
O
N
171
R
C
N
172
N
O
N
173
N
O
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
N
N
187
S
C
N
188
N
C
N
189
N
O
N
190
N
C
Y
191
N
C
Y
192
N
N
Y
193
N
C
Y
194
N
C
Y
195
N
N
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
S
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
N
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
S
N
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
NA
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
R
C
N
359
N
O
N
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
N
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
O
N
399
R
C
N
400
R
C
N
401
N
O
N
402
R
C
N
403
N
O
N
404
N
O
N
405
S
C
N
406
R
C
N
407
N
O
N
408
N
C
N
409
N
O
N
410
N
C
N
411
N
C
N
412
N
C
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
N
N
432
S
C
N
433
N
C
N
434
N
O
N
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
N
442
N
O
N
443
N
O
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
N
N
456
S
C
N
457
N
C
N
458
N
O
N
459
N
C
N
460
N
C
N
461
N
C
N
462
N
O
N
463
N
H
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
Y
188
N
sing
Y
189
N
doub
Y
190
N
doub
N
191
N
sing
Y
192
N
sing
N
193
N
sing
Y
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
doub
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
doub
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
doub
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
Y
296
N
doub
Y
297
N
sing
Y
298
N
sing
N
299
N
sing
Y
300
N
doub
N
301
N
sing
Y
302
N
doub
N
303
N
sing
Y
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
doub
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
doub
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
Y
365
N
doub
Y
366
N
sing
Y
367
N
sing
N
368
N
sing
Y
369
N
doub
Y
370
N
sing
Y
371
N
sing
N
372
N
sing
Y
373
N
sing
Y
374
N
doub
N
375
N
sing
Y
376
N
doub
N
377
N
sing
Y
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
doub
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
Y
426
N
doub
Y
427
N
sing
Y
428
N
sing
N
429
N
sing
Y
430
N
doub
N
431
N
sing
Y
432
N
doub
N
433
N
sing
Y
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
doub
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
UK
Q. Rev. Biophys.
1469-8994
50
e9
e9
10.1017/S0033583517000075
29233221
Lysozyme's lectin-like characteristics facilitates its immune defense function.
2017
10.2210/pdb5lsh/pdb
pdb_00005lsh
100
1
PIXEL
2015-10-24
DECTRIS PILATUS3 6M
SINGLE WAVELENGTH
M
x-ray
1
0.9762
1.0
P13 (MX1)
PETRA III, EMBL c/o DESY
0.9762
SYNCHROTRON
PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
14720.693
Lysozyme C
3.2.1.17
1
man
polymer
708.658
alpha-D-galactopyranose-(1-3)-beta-D-galactofuranose-(1-3)-alpha-D-galactopyranose-(1-3)-propyl beta-D-galactofuranoside
1
man
branched
35.453
CHLORIDE ION
3
syn
non-polymer
22.990
SODIUM ION
1
syn
non-polymer
18.015
water
160
nat
water
1,4-beta-N-acetylmuramidase C
no
no
KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLS
CSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLS
CSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
130
LYZ, LZM
9606
Homo sapiens
10090
Mus musculus
Biological sequence
1
1.91
35.51
VAPOR DIFFUSION, HANGING DROP
0.8 M NaCl, 25 mM NaOAc, pH 5.4
291
citation
citation_author
atom_site
chem_comp
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_conn_angle
struct_asym
struct_conn
struct_conn_type
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Carbohydrate remediation
repository
Remediation
Database references
Atomic model
Data collection
Derived calculations
Non-polymer description
Structure summary
Data collection
Database references
Refinement description
Structure summary
1
0
2017-06-21
1
1
2017-12-27
2
0
2020-07-29
2
1
2024-01-17
_citation.country
_citation.journal_id_ISSN
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.pdbx_database_id_PubMed
_citation.title
_citation_author.name
_atom_site.B_iso_or_equiv
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.label_alt_id
_atom_site.label_asym_id
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_entity_id
_atom_site.occupancy
_atom_site.type_symbol
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.id
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.type
_entity.formula_weight
_entity.pdbx_description
_entity.pdbx_number_of_molecules
_entity.src_method
_entity.type
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_asym.entity_id
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
A
KTS
135
n
B
TVG
1
A
KTS
135
n
B
GLA
2
A
KTS
135
n
B
GZL
3
A
KTS
135
n
B
GLA
4
DGalpa
a-D-galactopyranose
a-D-Galp
Gal
DGalfb
b-D-galactofuranose
b-D-Galf
Gal
N
PDBE
Y
PDBE
2016-08-26
REL
REL
oligosaccharide
WURCS=2.0/3,4,3/[a2112h-1b_1-4_1*OCCC][a2112h-1a_1-5][a2112h-1b_1-4]/1-2-3-2/a3-b1_b3-c1_c3-d1
2
PDB2Glycan
1.1.0
WURCS
[][propyl]{[(1+1)][b-D-Galf]{[(3+1)][a-D-Galp]{[(3+1)][b-D-Galf]{[(3+1)][a-D-Galp]{}}}}}
2
PDB-CARE
LINUCS
C1
O3
GLA
TVG
2
1
2
O1
HO3
sing
C1
O3
GZL
GLA
3
2
2
O1
HO3
sing
C1
O3
GLA
GZL
4
3
2
O1
HO3
sing
n
n
n
n
CL
CHLORIDE ION
NA
SODIUM ION
HOH
water
1REX
PDB
experimental model
CL
131
3
CL
CL
201
A
CL
132
3
CL
CL
202
A
CL
133
3
CL
CL
203
A
NA
134
4
NA
NA
204
A
HOH
275
5
HOH
HOH
301
A
HOH
207
5
HOH
HOH
302
A
HOH
294
5
HOH
HOH
303
A
HOH
193
5
HOH
HOH
304
A
HOH
138
5
HOH
HOH
305
A
HOH
196
5
HOH
HOH
306
A
HOH
169
5
HOH
HOH
307
A
HOH
199
5
HOH
HOH
308
A
HOH
224
5
HOH
HOH
309
A
HOH
291
5
HOH
HOH
310
A
HOH
285
5
HOH
HOH
311
A
HOH
159
5
HOH
HOH
312
A
HOH
160
5
HOH
HOH
313
A
HOH
258
5
HOH
HOH
314
A
HOH
205
5
HOH
HOH
315
A
HOH
172
5
HOH
HOH
316
A
HOH
283
5
HOH
HOH
317
A
HOH
223
5
HOH
HOH
318
A
HOH
279
5
HOH
HOH
319
A
HOH
200
5
HOH
HOH
320
A
HOH
147
5
HOH
HOH
321
A
HOH
150
5
HOH
HOH
322
A
HOH
142
5
HOH
HOH
323
A
HOH
164
5
HOH
HOH
324
A
HOH
179
5
HOH
HOH
325
A
HOH
232
5
HOH
HOH
326
A
HOH
270
5
HOH
HOH
327
A
HOH
276
5
HOH
HOH
328
A
HOH
176
5
HOH
HOH
329
A
HOH
203
5
HOH
HOH
330
A
HOH
139
5
HOH
HOH
331
A
HOH
211
5
HOH
HOH
332
A
HOH
231
5
HOH
HOH
333
A
HOH
189
5
HOH
HOH
334
A
HOH
234
5
HOH
HOH
335
A
HOH
253
5
HOH
HOH
336
A
HOH
192
5
HOH
HOH
337
A
HOH
154
5
HOH
HOH
338
A
HOH
227
5
HOH
HOH
339
A
HOH
255
5
HOH
HOH
340
A
HOH
204
5
HOH
HOH
341
A
HOH
217
5
HOH
HOH
342
A
HOH
155
5
HOH
HOH
343
A
HOH
171
5
HOH
HOH
344
A
HOH
163
5
HOH
HOH
345
A
HOH
222
5
HOH
HOH
346
A
HOH
252
5
HOH
HOH
347
A
HOH
288
5
HOH
HOH
348
A
HOH
161
5
HOH
HOH
349
A
HOH
195
5
HOH
HOH
350
A
HOH
145
5
HOH
HOH
351
A
HOH
182
5
HOH
HOH
352
A
HOH
144
5
HOH
HOH
353
A
HOH
174
5
HOH
HOH
354
A
HOH
266
5
HOH
HOH
355
A
HOH
151
5
HOH
HOH
356
A
HOH
168
5
HOH
HOH
357
A
HOH
156
5
HOH
HOH
358
A
HOH
241
5
HOH
HOH
359
A
HOH
190
5
HOH
HOH
360
A
HOH
249
5
HOH
HOH
361
A
HOH
197
5
HOH
HOH
362
A
HOH
236
5
HOH
HOH
363
A
HOH
264
5
HOH
HOH
364
A
HOH
208
5
HOH
HOH
365
A
HOH
281
5
HOH
HOH
366
A
HOH
244
5
HOH
HOH
367
A
HOH
184
5
HOH
HOH
368
A
HOH
248
5
HOH
HOH
369
A
HOH
149
5
HOH
HOH
370
A
HOH
221
5
HOH
HOH
371
A
HOH
158
5
HOH
HOH
372
A
HOH
175
5
HOH
HOH
373
A
HOH
140
5
HOH
HOH
374
A
HOH
218
5
HOH
HOH
375
A
HOH
286
5
HOH
HOH
376
A
HOH
212
5
HOH
HOH
377
A
HOH
263
5
HOH
HOH
378
A
HOH
238
5
HOH
HOH
379
A
HOH
143
5
HOH
HOH
380
A
HOH
187
5
HOH
HOH
381
A
HOH
198
5
HOH
HOH
382
A
HOH
274
5
HOH
HOH
383
A
HOH
256
5
HOH
HOH
384
A
HOH
167
5
HOH
HOH
385
A
HOH
153
5
HOH
HOH
386
A
HOH
177
5
HOH
HOH
387
A
HOH
230
5
HOH
HOH
388
A
HOH
180
5
HOH
HOH
389
A
HOH
243
5
HOH
HOH
390
A
HOH
137
5
HOH
HOH
391
A
HOH
247
5
HOH
HOH
392
A
HOH
157
5
HOH
HOH
393
A
HOH
268
5
HOH
HOH
394
A
HOH
183
5
HOH
HOH
395
A
HOH
214
5
HOH
HOH
396
A
HOH
292
5
HOH
HOH
397
A
HOH
186
5
HOH
HOH
398
A
HOH
136
5
HOH
HOH
399
A
HOH
202
5
HOH
HOH
400
A
HOH
148
5
HOH
HOH
401
A
HOH
265
5
HOH
HOH
402
A
HOH
194
5
HOH
HOH
403
A
HOH
191
5
HOH
HOH
404
A
HOH
262
5
HOH
HOH
405
A
HOH
206
5
HOH
HOH
406
A
HOH
240
5
HOH
HOH
407
A
HOH
146
5
HOH
HOH
408
A
HOH
178
5
HOH
HOH
409
A
HOH
215
5
HOH
HOH
410
A
HOH
201
5
HOH
HOH
411
A
HOH
267
5
HOH
HOH
412
A
HOH
209
5
HOH
HOH
413
A
HOH
229
5
HOH
HOH
414
A
HOH
173
5
HOH
HOH
415
A
HOH
185
5
HOH
HOH
416
A
HOH
166
5
HOH
HOH
417
A
HOH
233
5
HOH
HOH
418
A
HOH
219
5
HOH
HOH
419
A
HOH
293
5
HOH
HOH
420
A
HOH
235
5
HOH
HOH
421
A
HOH
165
5
HOH
HOH
422
A
HOH
220
5
HOH
HOH
423
A
HOH
246
5
HOH
HOH
424
A
HOH
290
5
HOH
HOH
425
A
HOH
152
5
HOH
HOH
426
A
HOH
245
5
HOH
HOH
427
A
HOH
216
5
HOH
HOH
428
A
HOH
181
5
HOH
HOH
429
A
HOH
213
5
HOH
HOH
430
A
HOH
271
5
HOH
HOH
431
A
HOH
162
5
HOH
HOH
432
A
HOH
289
5
HOH
HOH
433
A
HOH
141
5
HOH
HOH
434
A
HOH
269
5
HOH
HOH
435
A
HOH
287
5
HOH
HOH
436
A
HOH
284
5
HOH
HOH
437
A
HOH
188
5
HOH
HOH
438
A
HOH
260
5
HOH
HOH
439
A
HOH
237
5
HOH
HOH
440
A
HOH
225
5
HOH
HOH
441
A
HOH
278
5
HOH
HOH
442
A
HOH
210
5
HOH
HOH
443
A
HOH
239
5
HOH
HOH
444
A
HOH
257
5
HOH
HOH
445
A
HOH
277
5
HOH
HOH
446
A
HOH
254
5
HOH
HOH
447
A
HOH
170
5
HOH
HOH
448
A
HOH
261
5
HOH
HOH
449
A
HOH
251
5
HOH
HOH
450
A
HOH
273
5
HOH
HOH
451
A
HOH
295
5
HOH
HOH
452
A
HOH
226
5
HOH
HOH
453
A
HOH
242
5
HOH
HOH
454
A
HOH
272
5
HOH
HOH
455
A
HOH
259
5
HOH
HOH
456
A
HOH
250
5
HOH
HOH
457
A
HOH
228
5
HOH
HOH
458
A
HOH
282
5
HOH
HOH
459
A
HOH
280
5
HOH
HOH
460
A
LYS
1
n
1
LYS
1
A
VAL
2
n
2
VAL
2
A
PHE
3
n
3
PHE
3
A
GLU
4
n
4
GLU
4
A
ARG
5
n
5
ARG
5
A
CYS
6
n
6
CYS
6
A
GLU
7
n
7
GLU
7
A
LEU
8
n
8
LEU
8
A
ALA
9
n
9
ALA
9
A
ARG
10
n
10
ARG
10
A
THR
11
n
11
THR
11
A
LEU
12
n
12
LEU
12
A
LYS
13
n
13
LYS
13
A
ARG
14
n
14
ARG
14
A
LEU
15
n
15
LEU
15
A
GLY
16
n
16
GLY
16
A
MET
17
n
17
MET
17
A
ASP
18
n
18
ASP
18
A
GLY
19
n
19
GLY
19
A
TYR
20
n
20
TYR
20
A
ARG
21
n
21
ARG
21
A
GLY
22
n
22
GLY
22
A
ILE
23
n
23
ILE
23
A
SER
24
n
24
SER
24
A
LEU
25
n
25
LEU
25
A
ALA
26
n
26
ALA
26
A
ASN
27
n
27
ASN
27
A
TRP
28
n
28
TRP
28
A
MET
29
n
29
MET
29
A
CYS
30
n
30
CYS
30
A
LEU
31
n
31
LEU
31
A
ALA
32
n
32
ALA
32
A
LYS
33
n
33
LYS
33
A
TRP
34
n
34
TRP
34
A
GLU
35
n
35
GLU
35
A
SER
36
n
36
SER
36
A
GLY
37
n
37
GLY
37
A
TYR
38
n
38
TYR
38
A
ASN
39
n
39
ASN
39
A
THR
40
n
40
THR
40
A
ARG
41
n
41
ARG
41
A
ALA
42
n
42
ALA
42
A
THR
43
n
43
THR
43
A
ASN
44
n
44
ASN
44
A
TYR
45
n
45
TYR
45
A
ASN
46
n
46
ASN
46
A
ALA
47
n
47
ALA
47
A
GLY
48
n
48
GLY
48
A
ASP
49
n
49
ASP
49
A
ARG
50
n
50
ARG
50
A
SER
51
n
51
SER
51
A
THR
52
n
52
THR
52
A
ASP
53
n
53
ASP
53
A
TYR
54
n
54
TYR
54
A
GLY
55
n
55
GLY
55
A
ILE
56
n
56
ILE
56
A
PHE
57
n
57
PHE
57
A
GLN
58
n
58
GLN
58
A
ILE
59
n
59
ILE
59
A
ASN
60
n
60
ASN
60
A
SER
61
n
61
SER
61
A
ARG
62
n
62
ARG
62
A
TYR
63
n
63
TYR
63
A
TRP
64
n
64
TRP
64
A
CYS
65
n
65
CYS
65
A
ASN
66
n
66
ASN
66
A
ASP
67
n
67
ASP
67
A
GLY
68
n
68
GLY
68
A
LYS
69
n
69
LYS
69
A
THR
70
n
70
THR
70
A
PRO
71
n
71
PRO
71
A
GLY
72
n
72
GLY
72
A
ALA
73
n
73
ALA
73
A
VAL
74
n
74
VAL
74
A
ASN
75
n
75
ASN
75
A
ALA
76
n
76
ALA
76
A
CYS
77
n
77
CYS
77
A
HIS
78
n
78
HIS
78
A
LEU
79
n
79
LEU
79
A
SER
80
n
80
SER
80
A
CYS
81
n
81
CYS
81
A
SER
82
n
82
SER
82
A
ALA
83
n
83
ALA
83
A
LEU
84
n
84
LEU
84
A
LEU
85
n
85
LEU
85
A
GLN
86
n
86
GLN
86
A
ASP
87
n
87
ASP
87
A
ASN
88
n
88
ASN
88
A
ILE
89
n
89
ILE
89
A
ALA
90
n
90
ALA
90
A
ASP
91
n
91
ASP
91
A
ALA
92
n
92
ALA
92
A
VAL
93
n
93
VAL
93
A
ALA
94
n
94
ALA
94
A
CYS
95
n
95
CYS
95
A
ALA
96
n
96
ALA
96
A
LYS
97
n
97
LYS
97
A
ARG
98
n
98
ARG
98
A
VAL
99
n
99
VAL
99
A
VAL
100
n
100
VAL
100
A
ARG
101
n
101
ARG
101
A
ASP
102
n
102
ASP
102
A
PRO
103
n
103
PRO
103
A
GLN
104
n
104
GLN
104
A
GLY
105
n
105
GLY
105
A
ILE
106
n
106
ILE
106
A
ARG
107
n
107
ARG
107
A
ALA
108
n
108
ALA
108
A
TRP
109
n
109
TRP
109
A
VAL
110
n
110
VAL
110
A
ALA
111
n
111
ALA
111
A
TRP
112
n
112
TRP
112
A
ARG
113
n
113
ARG
113
A
ASN
114
n
114
ASN
114
A
ARG
115
n
115
ARG
115
A
CYS
116
n
116
CYS
116
A
GLN
117
n
117
GLN
117
A
ASN
118
n
118
ASN
118
A
ARG
119
n
119
ARG
119
A
ASP
120
n
120
ASP
120
A
VAL
121
n
121
VAL
121
A
ARG
122
n
122
ARG
122
A
GLN
123
n
123
GLN
123
A
TYR
124
n
124
TYR
124
A
VAL
125
n
125
VAL
125
A
GLN
126
n
126
GLN
126
A
GLY
127
n
127
GLY
127
A
CYS
128
n
128
CYS
128
A
GLY
129
n
129
GLY
129
A
VAL
130
n
130
VAL
130
A
author_and_software_defined_assembly
PISA
1
monomeric
350
-22
6930
A
THR
11
A
O
THR
11
1_555
A
NA
204
F
NA
NA
4_456
A
GLY
127
A
O
GLY
127
1_555
57.2
A
THR
11
A
O
THR
11
1_555
A
NA
204
F
NA
NA
4_456
A
HOH
448
G
O
HOH
4_556
58.5
A
GLY
127
A
O
GLY
127
1_555
A
NA
204
F
NA
NA
4_456
A
HOH
448
G
O
HOH
4_556
8.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ASN
44
A
N
ASN
44
A
O
ASP
53
A
O
ASP
53
A
N
TYR
54
A
N
TYR
54
A
O
ILE
59
A
O
ILE
59
1
A
A
O
O
HOH
HOH
302
383
1.90
1
A
A
O
O
HOH
HOH
303
339
1.93
1
A
A
O
O
HOH
HOH
309
383
2.09
1
A
A
NE2
O
GLN
HOH
126
301
2.13
1
A
A
O
O
HOH
HOH
309
340
2.15
1
A
A
OE2
O
GLU
HOH
35
302
2.15
B
1
A
A
OG1
O
THR
HOH
43
303
2.17
A
1
A
A
CD
OE2
GLU
GLU
4
4
0.071
0.011
1.252
1.323
N
1
A
CYS
116
-132.60
-37.62
0.2032
0.1801
0.1813
1.061
30.265
2372
47421
5.00
91.68
0.13
1
FREE R-VALUE
1.35
MOLECULAR REPLACEMENT
22.07
0.90
1.11
1REX
1.061
30.265
160
1241
52
0
1029
0.013
1288
1.569
1773
27.705
544
0.105
205
0.009
220
0.3208
0.3418
1.0827
83
1579
55.00
0.3480
0.3007
1.1062
130
2479
87.00
0.2714
0.2600
1.1320
133
2528
89.00
0.2698
0.2385
1.1603
135
2560
90.00
0.2689
0.2280
1.1917
138
2625
92.00
0.2489
0.2173
1.2267
141
2670
93.00
0.2383
0.2110
1.2663
140
2664
93.00
0.2224
0.1979
1.3116
141
2673
94.00
0.2198
0.1921
1.3641
143
2694
94.00
0.1949
0.1866
1.4262
144
2735
95.00
0.1955
0.1741
1.5014
142
2758
95.00
0.2077
0.1697
1.5954
145
2742
95.00
0.2237
0.1675
1.7186
146
2778
96.00
0.1879
0.1823
1.8915
146
2784
96.00
0.1982
0.1691
2.1652
151
2831
96.00
0.2038
0.1711
2.7276
152
2873
97.00
0.1694
0.1576
30.2778
162
3076
99.00
9.8
1.061
30.265
5LSH
47721
1
0.072
1
17.06
11.9
92
1.061
1.099
1.52
0.633
1
9.8
69
refinement
PHENIX
(1.10.1_2155)
data reduction
XDS
data scaling
XSCALE
phasing
MOLREP
N
human lysozyme in complex with a tetrasaccharide fragment of the O-chain of LPS from Klebsiella pneumoniae
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
5
N
N
A
GLU
4
A
GLU
4
HELX_P
A
LEU
15
A
LEU
15
1
AA1
12
A
GLY
19
A
GLY
19
HELX_P
A
ILE
23
A
ILE
23
5
AA2
5
A
SER
24
A
SER
24
HELX_P
A
GLY
37
A
GLY
37
1
AA3
14
A
SER
80
A
SER
80
HELX_P
A
GLN
86
A
GLN
86
5
AA4
7
A
ILE
89
A
ILE
89
HELX_P
A
ARG
101
A
ARG
101
1
AA5
13
A
GLN
104
A
GLN
104
HELX_P
A
ALA
108
A
ALA
108
5
AA6
5
A
TRP
109
A
TRP
109
HELX_P
A
CYS
116
A
CYS
116
1
AA7
8
A
VAL
121
A
VAL
121
HELX_P
A
VAL
125
A
VAL
125
5
AA8
5
disulf
2.088
A
CYS
6
A
SG
CYS
6
1_555
A
CYS
128
A
SG
CYS
128
1_555
disulf
2.086
A
CYS
30
A
SG
CYS
30
1_555
A
CYS
116
A
SG
CYS
116
1_555
disulf
2.048
A
CYS
65
A
SG
CYS
65
1_555
A
CYS
81
A
SG
CYS
81
1_555
disulf
2.045
A
CYS
77
A
SG
CYS
77
1_555
A
CYS
95
A
SG
CYS
95
1_555
covale
1.436
both
A
A
sing
B
TVG
1
B
O3
TVG
1_555
B
GLA
2
B
C1
GLA
1_555
covale
1.426
both
B
B
sing
B
TVG
1
B
O3
TVG
1_555
B
GLA
2
B
C1
GLA
1_555
covale
1.418
both
A
A
sing
B
GLA
2
B
O3
GLA
1_555
B
GZL
3
B
C1
GZL
1_555
covale
1.416
both
B
B
sing
B
GLA
2
B
O3
GLA
1_555
B
GZL
3
B
C1
GZL
1_555
covale
1.445
both
A
A
sing
B
GZL
3
B
O3
GZL
1_555
B
GLA
4
B
C1
GLA
1_555
covale
1.433
both
B
B
sing
B
GZL
3
B
O3
GZL
1_555
B
GLA
4
B
C1
GLA
1_555
metalc
2.945
A
THR
11
A
O
THR
11
1_555
A
NA
204
F
NA
NA
4_456
metalc
2.692
A
GLY
127
A
O
GLY
127
1_555
A
NA
204
F
NA
NA
1_555
metalc
2.795
A
NA
204
F
NA
NA
1_555
A
HOH
448
G
O
HOH
4_556
SUGAR BINDING PROTEIN
lectin, complex, LPS, O-chain, sugar binding protein
LYSC_HUMAN
UNP
1
19
P61626
KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLS
CSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
19
148
5LSH
1
130
P61626
A
1
1
130
3
anti-parallel
anti-parallel
A
THR
43
A
THR
43
A
TYR
45
A
TYR
45
A
THR
52
A
THR
52
A
TYR
54
A
TYR
54
A
ILE
59
A
ILE
59
A
ASN
60
A
ASN
60
19
P 21 21 21