0.015468 0.000000 0.001024 0.000000 0.021951 0.000000 0.000000 0.000000 0.008603 0.000000 0.000000 0.000000 Morgunova, E. Popov, A. Taipale, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 93.790 90.000 64.650 45.555 116.499 C10 H16 N3 O7 P 321.224 n 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE DNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 N C N 3 N N N 4 N C N 5 N C N 6 N C N 7 N C N 8 N O N 9 N N N 10 R C N 11 N C N 12 S C N 13 R C N 14 N O N 15 N O N 16 N C N 17 N O N 18 N P N 19 N O N 20 N O N 21 N O N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N N N 39 S C N 40 N C N 41 N O N 42 N C N 43 N O N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N N N 52 S C N 53 N C N 54 N O N 55 N C N 56 N C N 57 N C N 58 N N N 59 N C N 60 N N N 61 N N N 62 N O N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N N N 79 S C N 80 N C N 81 N O N 82 N C N 83 N C N 84 N O N 85 N N N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 N C N 122 R C Y 123 N N Y 124 N C Y 125 N N Y 126 N C Y 127 N C N 128 N N Y 129 N N Y 130 N C Y 131 N N Y 132 N C N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N O N 148 N P N 149 N O N 150 N O N 151 N O N 152 N C N 153 R C N 154 N O N 155 S C N 156 N O N 157 N C N 158 R C N 159 N N N 160 N C N 161 N O N 162 N N N 163 N C N 164 N N N 165 N C N 166 N C N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N O N 182 N P N 183 N O N 184 N O N 185 N O N 186 N C N 187 R C N 188 N O N 189 S C N 190 N O N 191 N C N 192 R C Y 193 N N Y 194 N C Y 195 N N Y 196 N C N 197 N C N 198 N O N 199 N N N 200 N C N 201 N N N 202 N N Y 203 N C N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N O N 219 N P N 220 N O N 221 N O N 222 N O N 223 N C N 224 R C N 225 N O N 226 S C N 227 N O N 228 N C N 229 R C N 230 N N N 231 N C N 232 N O N 233 N N N 234 N C N 235 N O N 236 N C N 237 N C N 238 N C N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C N 259 N C N 260 N C N 261 N O N 262 N N N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N O N 283 N O N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N N N 294 N C N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N N N 304 S C N 305 N C N 306 N O N 307 N C Y 308 N C Y 309 N N Y 310 N C Y 311 N C Y 312 N N N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N O N 325 N H N 326 N H N 327 N N N 328 S C N 329 N C N 330 N O N 331 S C N 332 N C N 333 N C N 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C N 354 N C N 355 N C N 356 N C N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N N N 372 S C N 373 N C N 374 N O N 375 N C N 376 N C N 377 N C N 378 N C N 379 N N N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N N N 397 S C N 398 N C N 399 N O N 400 N C Y 401 N C Y 402 N C Y 403 N C Y 404 N C Y 405 N C Y 406 N C N 407 N O N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N N N 420 S C N 421 N C N 422 N O N 423 N C N 424 N O N 425 N O N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 R C N 438 N O N 439 N C N 440 N O N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N N N 451 S C N 452 N C N 453 N O N 454 N C Y 455 N C Y 456 N C Y 457 N C Y 458 N N Y 459 N C Y 460 N C Y 461 N C Y 462 N C Y 463 N C N 464 N O N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N N N 478 S C N 479 N C N 480 N O N 481 N C Y 482 N C Y 483 N C Y 484 N C Y 485 N C Y 486 N C Y 487 N C N 488 N O N 489 N O N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N N N 502 S C N 503 N C N 504 N O N 505 N C N 506 N C N 507 N C N 508 N O N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 517 N H N 518 N H N 519 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N doub N 6 N doub N 7 N sing N 8 N sing N 9 N sing N 10 N doub N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N doub N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N doub N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N doub N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N doub N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N doub N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing Y 131 N sing Y 132 N sing Y 133 N doub N 134 N sing Y 135 N sing Y 136 N sing Y 137 N doub N 138 N sing Y 139 N doub N 140 N sing N 141 N sing Y 142 N sing Y 143 N doub N 144 N sing Y 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing Y 204 N sing Y 205 N sing Y 206 N doub N 207 N sing Y 208 N sing N 209 N sing Y 210 N doub N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N doub N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N doub N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N doub N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N doub N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N doub N 310 N sing N 311 N sing N 312 N sing N 313 N sing Y 314 N sing Y 315 N doub Y 316 N doub N 317 N sing Y 318 N sing N 319 N sing Y 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N doub N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N doub N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N doub N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N doub N 399 N sing N 400 N sing N 401 N sing N 402 N sing Y 403 N doub Y 404 N sing Y 405 N sing N 406 N sing Y 407 N doub N 408 N sing Y 409 N doub N 410 N sing Y 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N doub N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N doub N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N doub N 451 N sing N 452 N sing N 453 N sing N 454 N sing Y 455 N doub Y 456 N sing Y 457 N sing N 458 N sing Y 459 N doub Y 460 N sing Y 461 N sing N 462 N sing Y 463 N sing Y 464 N doub N 465 N sing Y 466 N doub N 467 N sing Y 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N doub N 479 N sing N 480 N sing N 481 N sing N 482 N sing Y 483 N doub Y 484 N sing Y 485 N sing N 486 N sing Y 487 N doub N 488 N sing Y 489 N doub N 490 N sing Y 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N doub N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing US Science SCIEAS 0038 1095-9203 356 10.1126/science.aaj2239 28473536 Impact of cytosine methylation on DNA binding specificities of human transcription factors. 2017 10.2210/pdb5lux/pdb pdb_00005lux 100 1 PIXEL 2016-07-03 DECTRIS PILATUS 6M-F SINGLE WAVELENGTH M x-ray 1 0.9724 1.0 ID23-1 ESRF 0.9724 SYNCHROTRON ESRF BEAMLINE ID23-1 5173.370 DNA (5'-D(P*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*(5CM)P*GP*AP*CP*CP*TP*C)-3') 1 syn polymer 7887.118 Homeobox protein CDX-1 2 man polymer 5462.551 DNA (5'-D(P*TP*TP*GP*TP*GP*TP*TP*TP*TP*AP*(5CM)P*GP*AP*CP*CP*TP*CP*C)-3') 1 syn polymer 5267.478 DNA (5'-D(P*GP*AP*GP*GP*TP*(5CM)P*GP*TP*AP*AP*AP*AP*CP*AP*CP*AP*A)-3') 1 syn polymer 5596.684 DNA (5'-D(P*GP*GP*AP*GP*GP*TP*(5CM)P*GP*TP*AP*AP*AP*AP*CP*AP*CP*AP*A)-3') 1 syn polymer 18.015 water 10 nat water Caudal-type homeobox protein 1 no yes (DT)(DT)(DG)(DT)(DG)(DT)(DT)(DT)(DT)(DA)(5CM)(DG)(DA)(DC)(DC)(DT)(DC) TTGTGTTTTACGACCTC A polydeoxyribonucleotide no no TKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKK TKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKK K,L polypeptide(L) no yes (DT)(DT)(DG)(DT)(DG)(DT)(DT)(DT)(DT)(DA)(5CM)(DG)(DA)(DC)(DC)(DT)(DC)(DC) TTGTGTTTTACGACCTCC B polydeoxyribonucleotide no yes (DG)(DA)(DG)(DG)(DT)(5CM)(DG)(DT)(DA)(DA)(DA)(DA)(DC)(DA)(DC)(DA)(DA) GAGGTCGTAAAACACAA F polydeoxyribonucleotide no yes (DG)(DG)(DA)(DG)(DG)(DT)(5CM)(DG)(DT)(DA)(DA)(DA)(DA)(DC)(DA)(DC)(DA)(DA) GGAGGTCGTAAAACACAA E polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 63 CDX1 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) Rosetta plasmid Biological sequence pETG20A 1 2.30 46.43 VAPOR DIFFUSION, SITTING DROP 8.0 PEG MME (5000),KCl, MgCl2, 2-Methyl propanol, Tris buffer 293 -11.439 1 20 A 1 F 36 1.613 A_DT1:DA36_F 1 -27.677 0.540 0.743 -0.101 1.304 1 20 A 2 F 35 3.869 A_DT2:DA35_F 2 -31.677 -0.499 -0.696 0.298 -23.572 1 19 A 3 F 34 -1.435 A_DG3:DC34_F 3 -1.868 -0.415 -0.231 0.052 -11.434 1 20 A 4 F 33 1.645 A_DT4:DA33_F 4 -2.788 -0.405 0.823 -0.259 1.759 1 19 A 5 F 32 0.844 A_DG5:DC32_F 5 -15.850 -0.987 0.338 -0.150 -9.515 1 20 A 6 F 31 0.805 A_DT6:DA31_F 6 -13.005 0.389 0.454 0.020 -6.860 1 20 A 7 F 30 1.990 A_DT7:DA30_F 7 -13.963 0.513 0.228 -0.140 -11.227 1 20 A 8 F 29 3.436 A_DT8:DA29_F 8 -11.967 0.330 0.407 -0.300 -7.605 1 20 A 9 F 28 0.510 A_DT9:DA28_F 9 0.070 0.151 0.687 -0.388 1.260 1 20 A 10 F 27 2.156 A_DA10:DT27_F 10 -3.416 -0.026 0.155 -0.127 7.988 1 19 A 11 F 26 -6.338 A_5CM11:DG26_F 11 -20.452 0.395 -0.430 -0.320 5.053 1 19 A 12 F 25 -5.926 A_DG12:5CM25_F 12 -5.529 0.141 0.003 -0.048 11.779 1 20 A 13 F 24 -9.639 A_DA13:DT24_F 13 -3.766 1.059 0.220 -0.275 20.335 1 19 A 14 F 23 -2.054 A_DC14:DG23_F 14 -18.909 0.290 -0.135 -0.373 -1.994 1 A 15 F 22 6.473 A_DC15:DG22_F 15 -18.319 -0.704 0.651 0.295 6.878 1 20 A 16 F 21 -6.860 A_DT16:DA21_F 16 -14.880 -0.534 0.532 0.182 -0.875 1 19 A 17 F 20 -0.463 A_DC17:DG20_F 17 -8.113 0.265 -0.450 0.136 -7.000 1 20 B 1 E 36 1.717 B_DT1:DA36_E 18 -25.813 0.521 0.937 -0.128 -25.043 1 19 B 3 E 34 -1.942 B_DG3:DC34_E 19 -2.508 -0.136 -0.198 0.085 -12.743 1 20 B 4 E 33 0.513 B_DT4:DA33_E 20 -2.935 -0.170 0.896 -0.250 0.682 1 19 B 5 E 32 -0.077 B_DG5:DC32_E 21 -15.924 -0.875 0.375 -0.180 -10.037 1 20 B 6 E 31 0.281 B_DT6:DA31_E 22 -12.521 0.429 0.514 -0.034 -7.194 1 20 B 7 E 30 2.464 B_DT7:DA30_E 23 -13.716 0.545 0.266 -0.157 -11.531 1 20 B 8 E 29 4.794 B_DT8:DA29_E 24 -11.670 0.406 0.427 -0.255 -7.622 1 20 B 9 E 28 1.445 B_DT9:DA28_E 25 -0.376 0.164 0.661 -0.343 2.131 1 20 B 10 E 27 4.310 B_DA10:DT27_E 26 -3.580 0.013 0.167 -0.103 8.837 1 19 B 11 E 26 -3.652 B_5CM11:DG26_E 27 -21.392 0.392 -0.428 -0.391 4.678 1 19 B 12 E 25 -4.788 B_DG12:5CM25_E 28 -5.285 0.054 -0.089 -0.113 11.278 1 20 B 13 E 24 -8.335 B_DA13:DT24_E 29 -3.239 0.990 0.118 -0.281 20.180 1 19 B 14 E 23 -1.026 B_DC14:DG23_E 30 -17.940 0.246 -0.254 -0.330 -1.424 1 B 15 E 22 7.126 B_DC15:DG22_E 31 -17.978 -0.619 0.470 0.337 7.059 1 20 B 16 E 21 -6.013 B_DT16:DA21_E 32 -16.840 -0.467 0.332 0.146 -4.768 1 19 B 17 E 20 3.455 B_DC17:DG20_E 33 -14.813 0.044 -0.426 0.287 11.856 1 B 18 E 19 40.944 B_DC18:DG19_E 34 -32.883 0.141 -1.039 0.296 2.342 34.395 A A 1 2 2.415 F F 36 35 2.531 1.402 -0.204 0.308 AA_DT1DT2:DA35DA36_FF 1 11.353 -19.549 32.491 0.353 1.704 4.007 47.738 A A 2 3 9.127 F F 35 34 3.943 7.310 0.217 1.589 AA_DT2DG3:DC34DA35_FF 2 -10.104 12.615 46.173 1.242 -1.266 2.811 22.787 A A 3 4 15.599 F F 34 33 3.190 5.932 -0.310 -0.544 AA_DG3DT4:DA33DC34_FF 3 -8.756 23.023 20.213 -3.449 -2.275 2.831 33.757 A A 4 5 2.482 F F 33 32 2.829 1.438 0.142 0.145 AA_DT4DG5:DC32DA33_FF 4 3.798 -6.555 33.519 0.047 0.290 3.466 41.289 A A 5 6 4.563 F F 32 31 3.535 3.214 -0.213 -0.852 AA_DG5DT6:DA31DC32_FF 5 -1.295 1.839 41.149 -1.578 0.152 3.047 36.448 A A 6 7 -5.675 F F 31 30 3.004 -3.544 -0.099 -0.663 AA_DT6DT7:DA30DA31_FF 6 1.399 -2.240 36.255 -0.604 0.339 3.269 38.029 A A 7 8 -8.424 F F 30 29 3.288 -5.465 0.323 0.015 AA_DT7DT8:DA29DA30_FF 7 3.354 -5.170 37.504 0.725 -0.064 3.175 33.600 A A 8 9 14.806 F F 29 28 3.257 8.471 -0.227 0.102 AA_DT8DT9:DA28DA29_FF 8 0.850 -1.486 32.534 -1.210 0.532 2.991 34.081 A A 9 10 8.883 F F 28 27 2.978 5.154 0.862 -0.436 AA_DT9DA10:DT27DA28_FF 9 6.824 -11.761 33.022 -1.505 -0.464 3.018 33.027 A A 10 11 -0.673 F F 27 26 3.127 -0.381 -0.520 -0.871 AA_DA105CM11:DG26DT27_FF 10 5.269 -9.306 32.613 -1.472 1.758 3.374 36.421 A A 11 12 24.978 F F 26 25 3.454 15.165 0.288 0.518 AA_5CM11DG12:5CM25DG26_FF 11 0.839 -1.381 33.201 -1.480 -0.333 3.002 38.866 A A 12 13 9.770 F F 25 24 2.999 6.459 -0.905 -0.260 AA_DG12DA13:DT245CM25_FF 12 -4.578 6.925 38.082 -1.119 0.844 3.003 27.859 A A 13 14 10.958 F F 24 23 3.120 5.244 0.536 -0.456 AA_DA13DC14:DG23DT24_FF 13 1.218 -2.544 27.344 -2.131 -0.837 3.140 37.134 A A 14 15 13.346 F F 23 22 3.536 8.399 0.223 -1.093 AA_DC14DC15:DG22DG23_FF 14 -5.584 8.873 35.785 -2.883 -1.126 3.314 31.752 A A 15 16 -3.350 F F 22 21 3.104 -1.823 -1.310 -0.761 AA_DC15DT16:DA21DG22_FF 15 -5.342 9.814 31.259 -1.059 1.424 3.309 45.889 A A 16 17 -6.013 F F 21 20 3.287 -4.667 0.909 0.566 AA_DT16DC17:DG20DA21_FF 16 6.511 -8.389 45.222 1.136 -0.593 6.782 80.485 B B 1 3 -0.492 E E 36 34 6.790 -0.635 -0.678 1.125 BB_DT1DG3:DC34DA36_EE 17 0.075 -0.058 80.483 0.905 0.529 2.809 22.631 B B 3 4 15.904 E E 34 33 3.185 6.000 -0.344 -0.540 BB_DG3DT4:DA33DC34_EE 18 -8.807 23.344 19.994 -3.502 -2.246 2.820 32.878 B B 4 5 3.883 E E 33 32 2.818 2.191 0.159 0.139 BB_DT4DG5:DC32DA33_EE 19 4.115 -7.294 32.555 -0.079 0.328 3.454 40.854 B B 5 6 4.684 E E 32 31 3.526 3.266 -0.198 -0.856 BB_DG5DT6:DA31DC32_EE 20 -1.301 1.866 40.709 -1.609 0.130 3.040 36.273 B B 6 7 -5.223 E E 31 30 3.002 -3.246 -0.068 -0.653 BB_DT6DT7:DA30DA31_EE 21 1.822 -2.932 36.088 -0.628 0.345 3.273 38.309 B B 7 8 -8.783 E E 30 29 3.294 -5.736 0.356 0.035 BB_DT7DT8:DA29DA30_EE 22 3.581 -5.484 37.729 0.781 -0.089 3.163 32.945 B B 8 9 14.100 E E 29 28 3.239 7.921 -0.262 0.104 BB_DT8DT9:DA28DA29_EE 23 1.092 -1.944 31.987 -1.156 0.647 2.985 33.776 B B 9 10 7.846 E E 28 27 2.950 4.519 0.900 -0.423 BB_DT9DA10:DT27DA28_EE 24 6.373 -11.064 32.886 -1.400 -0.600 3.008 32.812 B B 10 11 -0.324 E E 27 26 3.122 -0.182 -0.496 -0.859 BB_DA105CM11:DG26DT27_EE 25 5.348 -9.509 32.384 -1.491 1.745 3.366 36.645 B B 11 12 26.042 E E 26 25 3.470 15.864 0.198 0.509 BB_5CM11DG12:5CM25DG26_EE 26 1.054 -1.730 33.123 -1.590 -0.155 3.006 38.888 B B 12 13 9.878 E E 25 24 3.005 6.533 -0.906 -0.257 BB_DG12DA13:DT245CM25_EE 27 -4.546 6.873 38.095 -1.124 0.847 2.996 27.558 B B 13 14 11.336 E E 24 23 3.118 5.365 0.524 -0.447 BB_DA13DC14:DG23DT24_EE 28 1.336 -2.823 27.008 -2.178 -0.791 3.196 36.757 B B 14 15 12.160 E E 23 22 3.544 7.593 0.220 -1.079 BB_DC14DC15:DG22DG23_EE 29 -5.027 8.050 35.649 -2.794 -1.066 3.336 31.716 B B 15 16 -5.393 E E 22 21 3.112 -2.930 -1.296 -0.765 BB_DC15DT16:DA21DG22_EE 30 -5.253 9.667 31.155 -0.863 1.410 3.322 47.325 B B 16 17 -9.443 E E 21 20 3.361 -7.531 0.923 0.597 BB_DT16DC17:DG20DA21_EE 31 6.255 -7.843 46.359 1.376 -0.625 3.665 44.487 B B 17 18 0.199 E E 20 19 3.079 0.148 2.435 2.306 BB_DC17DC18:DG19DG20_EE 32 13.674 -18.330 42.435 3.031 -1.881 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_ncs_dom_lim repository Initial release Data collection Database references Refinement description 1 0 2017-05-17 1 1 2024-01-17 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.end_auth_comp_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id N PDBE Y PDBE 2016-09-12 REL REL HOH water 9606 Homo sapiens sample 1 17 9606 Homo sapiens sample 1 18 9606 Homo sapiens sample 1 17 9606 Homo sapiens sample 1 18 5LTX PDB experimental model HOH 9 6 HOH HOH 101 A HOH 1 6 HOH HOH 102 A HOH 6 6 HOH HOH 301 K HOH 4 6 HOH HOH 101 B HOH 3 6 HOH HOH 102 B HOH 8 6 HOH HOH 301 L HOH 10 6 HOH HOH 302 L HOH 2 6 HOH HOH 101 F HOH 7 6 HOH HOH 101 E HOH 5 6 HOH HOH 102 E DT 1 n 1 DT 1 A DT 2 n 2 DT 2 A DG 3 n 3 DG 3 A DT 4 n 4 DT 4 A DG 5 n 5 DG 5 A DT 6 n 6 DT 6 A DT 7 n 7 DT 7 A DT 8 n 8 DT 8 A DT 9 n 9 DT 9 A DA 10 n 10 DA 10 A 5CM 11 n 11 5CM 11 A DG 12 n 12 DG 12 A DA 13 n 13 DA 13 A DC 14 n 14 DC 14 A DC 15 n 15 DC 15 A DT 16 n 16 DT 16 A DC 17 n 17 DC 17 A THR 153 n 1 THR 153 K LYS 154 n 2 LYS 154 K ASP 155 n 3 ASP 155 K LYS 156 n 4 LYS 156 K TYR 157 n 5 TYR 157 K ARG 158 n 6 ARG 158 K VAL 159 n 7 VAL 159 K VAL 160 n 8 VAL 160 K TYR 161 n 9 TYR 161 K THR 162 n 10 THR 162 K ASP 163 n 11 ASP 163 K HIS 164 n 12 HIS 164 K GLN 165 n 13 GLN 165 K ARG 166 n 14 ARG 166 K LEU 167 n 15 LEU 167 K GLU 168 n 16 GLU 168 K LEU 169 n 17 LEU 169 K GLU 170 n 18 GLU 170 K LYS 171 n 19 LYS 171 K GLU 172 n 20 GLU 172 K PHE 173 n 21 PHE 173 K HIS 174 n 22 HIS 174 K TYR 175 n 23 TYR 175 K SER 176 n 24 SER 176 K ARG 177 n 25 ARG 177 K TYR 178 n 26 TYR 178 K ILE 179 n 27 ILE 179 K THR 180 n 28 THR 180 K ILE 181 n 29 ILE 181 K ARG 182 n 30 ARG 182 K ARG 183 n 31 ARG 183 K LYS 184 n 32 LYS 184 K SER 185 n 33 SER 185 K GLU 186 n 34 GLU 186 K LEU 187 n 35 LEU 187 K ALA 188 n 36 ALA 188 K ALA 189 n 37 ALA 189 K ASN 190 n 38 ASN 190 K LEU 191 n 39 LEU 191 K GLY 192 n 40 GLY 192 K LEU 193 n 41 LEU 193 K THR 194 n 42 THR 194 K GLU 195 n 43 GLU 195 K ARG 196 n 44 ARG 196 K GLN 197 n 45 GLN 197 K VAL 198 n 46 VAL 198 K LYS 199 n 47 LYS 199 K ILE 200 n 48 ILE 200 K TRP 201 n 49 TRP 201 K PHE 202 n 50 PHE 202 K GLN 203 n 51 GLN 203 K ASN 204 n 52 ASN 204 K ARG 205 n 53 ARG 205 K ARG 206 n 54 ARG 206 K ALA 207 n 55 ALA 207 K LYS 208 n 56 LYS 208 K GLU 209 n 57 GLU 209 K ARG 210 n 58 ARG 210 K LYS 211 n 59 LYS 211 K VAL 212 n 60 VAL 212 K ASN 213 n 61 ASN 213 K LYS 214 n 62 LYS 214 K LYS 215 n 63 LYS 215 K DT 1 n 1 DT 1 B DT 2 n 2 DT 2 B DG 3 n 3 DG 3 B DT 4 n 4 DT 4 B DG 5 n 5 DG 5 B DT 6 n 6 DT 6 B DT 7 n 7 DT 7 B DT 8 n 8 DT 8 B DT 9 n 9 DT 9 B DA 10 n 10 DA 10 B 5CM 11 n 11 5CM 11 B DG 12 n 12 DG 12 B DA 13 n 13 DA 13 B DC 14 n 14 DC 14 B DC 15 n 15 DC 15 B DT 16 n 16 DT 16 B DC 17 n 17 DC 17 B DC 18 n 18 DC 18 B THR 153 n 1 THR 153 L LYS 154 n 2 LYS 154 L ASP 155 n 3 ASP 155 L LYS 156 n 4 LYS 156 L TYR 157 n 5 TYR 157 L ARG 158 n 6 ARG 158 L VAL 159 n 7 VAL 159 L VAL 160 n 8 VAL 160 L TYR 161 n 9 TYR 161 L THR 162 n 10 THR 162 L ASP 163 n 11 ASP 163 L HIS 164 n 12 HIS 164 L GLN 165 n 13 GLN 165 L ARG 166 n 14 ARG 166 L LEU 167 n 15 LEU 167 L GLU 168 n 16 GLU 168 L LEU 169 n 17 LEU 169 L GLU 170 n 18 GLU 170 L LYS 171 n 19 LYS 171 L GLU 172 n 20 GLU 172 L PHE 173 n 21 PHE 173 L HIS 174 n 22 HIS 174 L TYR 175 n 23 TYR 175 L SER 176 n 24 SER 176 L ARG 177 n 25 ARG 177 L TYR 178 n 26 TYR 178 L ILE 179 n 27 ILE 179 L THR 180 n 28 THR 180 L ILE 181 n 29 ILE 181 L ARG 182 n 30 ARG 182 L ARG 183 n 31 ARG 183 L LYS 184 n 32 LYS 184 L SER 185 n 33 SER 185 L GLU 186 n 34 GLU 186 L LEU 187 n 35 LEU 187 L ALA 188 n 36 ALA 188 L ALA 189 n 37 ALA 189 L ASN 190 n 38 ASN 190 L LEU 191 n 39 LEU 191 L GLY 192 n 40 GLY 192 L LEU 193 n 41 LEU 193 L THR 194 n 42 THR 194 L GLU 195 n 43 GLU 195 L ARG 196 n 44 ARG 196 L GLN 197 n 45 GLN 197 L VAL 198 n 46 VAL 198 L LYS 199 n 47 LYS 199 L ILE 200 n 48 ILE 200 L TRP 201 n 49 TRP 201 L PHE 202 n 50 PHE 202 L GLN 203 n 51 GLN 203 L ASN 204 n 52 ASN 204 L ARG 205 n 53 ARG 205 L ARG 206 n 54 ARG 206 L ALA 207 n 55 ALA 207 L LYS 208 n 56 LYS 208 L GLU 209 n 57 GLU 209 L ARG 210 n 58 ARG 210 L LYS 211 n 59 LYS 211 L VAL 212 n 60 VAL 212 L ASN 213 n 61 ASN 213 L LYS 214 n 62 LYS 214 L n 63 215 L DG 20 n 1 DG 20 F DA 21 n 2 DA 21 F DG 22 n 3 DG 22 F DG 23 n 4 DG 23 F DT 24 n 5 DT 24 F 5CM 25 n 6 5CM 25 F DG 26 n 7 DG 26 F DT 27 n 8 DT 27 F DA 28 n 9 DA 28 F DA 29 n 10 DA 29 F DA 30 n 11 DA 30 F DA 31 n 12 DA 31 F DC 32 n 13 DC 32 F DA 33 n 14 DA 33 F DC 34 n 15 DC 34 F DA 35 n 16 DA 35 F DA 36 n 17 DA 36 F DG 19 n 1 DG 19 E DG 20 n 2 DG 20 E DA 21 n 3 DA 21 E DG 22 n 4 DG 22 E DG 23 n 5 DG 23 E DT 24 n 6 DT 24 E 5CM 25 n 7 5CM 25 E DG 26 n 8 DG 26 E DT 27 n 9 DT 27 E DA 28 n 10 DA 28 E DA 29 n 11 DA 29 E DA 30 n 12 DA 30 E DA 31 n 13 DA 31 E DC 32 n 14 DC 32 E DA 33 n 15 DA 33 E DC 34 n 16 DC 34 E DA 35 n 17 DA 35 E DA 36 n 18 DA 36 E 3.7738 -5.3455 1.1137 8.5789 -0.7686 1.0503 0.0883 0.0943 -0.0935 -0.2177 -0.1055 0.3280 -0.0066 -0.0123 0.0172 0.0627 -0.0169 -0.1382 0.0728 0.0922 1.2139 refined -16.9594 -28.0758 -18.8237 X-RAY DIFFRACTION 3.0003 -0.4198 -0.7761 4.9472 -0.8368 8.2518 -0.0088 -0.1938 0.4035 0.1509 0.3714 0.1172 -0.1827 -0.3809 -0.3626 0.0884 0.0463 -0.1102 0.0683 0.0197 1.0710 refined -16.3559 -19.2056 -8.3546 X-RAY DIFFRACTION 2.4681 4.1588 -0.0137 7.2239 0.2636 0.5077 -0.0367 -0.0832 0.4386 -0.0412 -0.0567 0.6200 0.0848 0.0868 0.0934 0.1097 -0.0271 -0.1752 0.0468 -0.0149 1.4353 refined -17.2022 -26.1199 19.0727 X-RAY DIFFRACTION 3.8612 2.7022 -0.8118 2.9736 -0.6212 7.9813 -0.3573 0.6044 -0.1185 0.0009 0.2294 -0.1786 0.4174 -0.4584 0.1279 0.1140 -0.1174 -0.1012 0.1439 0.0210 1.1686 refined -15.8970 -34.0289 8.4250 X-RAY DIFFRACTION A 1 A 17 X-RAY DIFFRACTION 1 F 20 F 36 X-RAY DIFFRACTION 1 K 153 K 215 X-RAY DIFFRACTION 2 B 1 B 18 X-RAY DIFFRACTION 3 E 19 E 36 X-RAY DIFFRACTION 3 L 153 L 214 X-RAY DIFFRACTION 4 software_defined_assembly PISA 3 trimeric software_defined_assembly PISA 3 trimeric 4990 -15 9110 5090 -15 9380 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 L LYS 215 D LYS 63 1 Y 1 A K OP2 OH DA TYR 10 161 2.13 1 K K LYS TYR 156 157 -31.06 1 L L LYS TYR 156 157 -33.01 1 16.68 2.70 111.00 127.68 K K K N CA C ASP ASP ASP 155 155 155 N 1 3.01 0.50 120.30 123.31 K K K NE CZ NH1 ARG ARG ARG 158 158 158 N 1 16.32 2.70 111.00 127.32 L L L N CA C ASP ASP ASP 155 155 155 N 1 -8.99 0.90 105.70 96.71 E E E O5' P OP1 DG DG DG 22 22 22 N 1 A A O3' P DT DT 8 9 -0.087 0.012 1.607 1.520 Y 1 F F O3' P DA DA 30 31 -0.072 0.012 1.607 1.535 Y 1 K LYS 156 170.13 84.92 1 L LYS 156 169.16 85.19 237.960 90.6030 35.870 4.6900 0.0000 0.3800 -2.6800 0.0000 -2.0400 0.9170 0.8640 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : WITH TLS ADDED 0.2995 0.2411 0.2467 3.2300 58.1200 515 4909 9.5000 97.1200 100.7090 0.6970 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.7290 0.8000 0.8000 1.2000 5LTX 3.2300 58.1200 10 2552 92.56 0 1439 1103 195 0.013 0.015 2731 0.004 0.020 1929 1.852 1.521 3970 1.689 3.000 4473 8.182 5.000 123 37.059 21.562 64 21.348 15.000 238 15.538 15.000 18 0.124 0.200 365 0.009 0.020 2042 0.003 0.020 615 3.548 4.388 498 3.529 4.371 497 6.051 6.540 619 1 A 1 5198 X-RAY DIFFRACTION interatomic distance 0.010 0.050 2 B 1 5198 X-RAY DIFFRACTION interatomic distance 0.010 0.050 1 K 2 15516 X-RAY DIFFRACTION interatomic distance 0.080 0.050 2 L 2 15516 X-RAY DIFFRACTION interatomic distance 0.080 0.050 1 F 3 5388 X-RAY DIFFRACTION interatomic distance 0.010 0.050 2 E 3 5388 X-RAY DIFFRACTION interatomic distance 0.010 0.050 0.2900 0.3380 3.3170 27 262 289 20 73.3500 57 3.230 58.120 5LUX 5425 0.995 0.174 1 5.300 3.400 97.200 0.533 3.230 3.490 1.91 0.891 1 3.200 88.900 data scaling Aimless 0.5.25 refinement REFMAC 5.8.0135 data extraction PDB_EXTRACT 3.20 data reduction XDS phasing MOLREP N Homeobox transcription factor CDX1 bound to methylated DNA 1 N N 2 N N 3 N N 2 N N 4 N N 5 N N 6 N N 6 N N 6 N N 6 N N 6 N N 6 N N K THR 162 B THR 10 HELX_P K SER 176 B SER 24 1 AA1 15 K THR 180 B THR 28 HELX_P K GLY 192 B GLY 40 1 AA2 13 K THR 194 B THR 42 HELX_P K LYS 215 B LYS 63 1 AA3 22 L THR 162 D THR 10 HELX_P L SER 176 D SER 24 1 AA4 15 L THR 180 D THR 28 HELX_P L GLY 192 D GLY 40 1 AA5 13 L THR 194 D THR 42 HELX_P L LYS 214 D LYS 62 1 AA6 21 covale 1.590 both A DA 10 A O3' DA 10 1_555 A 5CM 11 A P 5CM 11 1_555 covale 1.606 both A 5CM 11 A O3' 5CM 11 1_555 A DG 12 A P DG 12 1_555 covale 1.550 both B DA 10 C O3' DA 10 1_555 B 5CM 11 C P 5CM 11 1_555 covale 1.593 both B 5CM 11 C O3' 5CM 11 1_555 B DG 12 C P DG 12 1_555 covale 1.651 both F DT 24 E O3' DT 5 1_555 F 5CM 25 E P 5CM 6 1_555 covale 1.575 both F 5CM 25 E O3' 5CM 6 1_555 F DG 26 E P DG 7 1_555 covale 1.608 both E DT 24 F O3' DT 6 1_555 E 5CM 25 F P 5CM 7 1_555 covale 1.584 both E 5CM 25 F O3' 5CM 7 1_555 E DG 26 F P DG 8 1_555 hydrog DT-DA PAIR A DT 1 A O4 DT 1 1_555 F DA 35 E N6 DA 16 1_555 hydrog WATSON-CRICK A DT 1 A N3 DT 1 1_555 F DA 36 E N1 DA 17 1_555 hydrog WATSON-CRICK A DT 1 A O4 DT 1 1_555 F DA 36 E N6 DA 17 1_555 hydrog WATSON-CRICK A DT 2 A N3 DT 2 1_555 F DA 35 E N1 DA 16 1_555 hydrog WATSON-CRICK A DT 2 A O4 DT 2 1_555 F DA 35 E N6 DA 16 1_555 hydrog WATSON-CRICK A DG 3 A N1 DG 3 1_555 F DC 34 E N3 DC 15 1_555 hydrog WATSON-CRICK A DG 3 A N2 DG 3 1_555 F DC 34 E O2 DC 15 1_555 hydrog WATSON-CRICK A DG 3 A O6 DG 3 1_555 F DC 34 E N4 DC 15 1_555 hydrog DT-DC MISPAIR A DT 4 A O4 DT 4 1_555 F DC 32 E N4 DC 13 1_555 hydrog WATSON-CRICK A DT 4 A N3 DT 4 1_555 F DA 33 E N1 DA 14 1_555 hydrog WATSON-CRICK A DT 4 A O4 DT 4 1_555 F DA 33 E N6 DA 14 1_555 hydrog WATSON-CRICK A DG 5 A N1 DG 5 1_555 F DC 32 E N3 DC 13 1_555 hydrog WATSON-CRICK A DG 5 A N2 DG 5 1_555 F DC 32 E O2 DC 13 1_555 hydrog WATSON-CRICK A DG 5 A O6 DG 5 1_555 F DC 32 E N4 DC 13 1_555 hydrog WATSON-CRICK A DT 6 A N3 DT 6 1_555 F DA 31 E N1 DA 12 1_555 hydrog WATSON-CRICK A DT 6 A O4 DT 6 1_555 F DA 31 E N6 DA 12 1_555 hydrog WATSON-CRICK A DT 7 A N3 DT 7 1_555 F DA 30 E N1 DA 11 1_555 hydrog WATSON-CRICK A DT 7 A O4 DT 7 1_555 F DA 30 E N6 DA 11 1_555 hydrog WATSON-CRICK A DT 8 A N3 DT 8 1_555 F DA 29 E N1 DA 10 1_555 hydrog WATSON-CRICK A DT 8 A O4 DT 8 1_555 F DA 29 E N6 DA 10 1_555 hydrog WATSON-CRICK A DT 9 A N3 DT 9 1_555 F DA 28 E N1 DA 9 1_555 hydrog WATSON-CRICK A DT 9 A O4 DT 9 1_555 F DA 28 E N6 DA 9 1_555 hydrog WATSON-CRICK A DA 10 A N1 DA 10 1_555 F DT 27 E N3 DT 8 1_555 hydrog WATSON-CRICK A DA 10 A N6 DA 10 1_555 F DT 27 E O4 DT 8 1_555 hydrog WATSON-CRICK A 5CM 11 A N3 5CM 11 1_555 F DG 26 E N1 DG 7 1_555 hydrog WATSON-CRICK A 5CM 11 A N4 5CM 11 1_555 F DG 26 E O6 DG 7 1_555 hydrog WATSON-CRICK A 5CM 11 A O2 5CM 11 1_555 F DG 26 E N2 DG 7 1_555 hydrog WATSON-CRICK A DG 12 A N1 DG 12 1_555 F 5CM 25 E N3 5CM 6 1_555 hydrog WATSON-CRICK A DG 12 A N2 DG 12 1_555 F 5CM 25 E O2 5CM 6 1_555 hydrog WATSON-CRICK A DG 12 A O6 DG 12 1_555 F 5CM 25 E N4 5CM 6 1_555 hydrog WATSON-CRICK A DA 13 A N1 DA 13 1_555 F DT 24 E N3 DT 5 1_555 hydrog WATSON-CRICK A DA 13 A N6 DA 13 1_555 F DT 24 E O4 DT 5 1_555 hydrog WATSON-CRICK A DC 14 A N3 DC 14 1_555 F DG 23 E N1 DG 4 1_555 hydrog WATSON-CRICK A DC 14 A N4 DC 14 1_555 F DG 23 E O6 DG 4 1_555 hydrog WATSON-CRICK A DC 14 A O2 DC 14 1_555 F DG 23 E N2 DG 4 1_555 hydrog DC-DG PAIR A DC 15 A O2 DC 15 1_555 F DG 22 E N2 DG 3 1_555 hydrog WATSON-CRICK A DT 16 A N3 DT 16 1_555 F DA 21 E N1 DA 2 1_555 hydrog WATSON-CRICK A DT 16 A O4 DT 16 1_555 F DA 21 E N6 DA 2 1_555 hydrog WATSON-CRICK A DC 17 A N3 DC 17 1_555 F DG 20 E N1 DG 1 1_555 hydrog WATSON-CRICK A DC 17 A N4 DC 17 1_555 F DG 20 E O6 DG 1 1_555 hydrog WATSON-CRICK A DC 17 A O2 DC 17 1_555 F DG 20 E N2 DG 1 1_555 hydrog WATSON-CRICK B DT 1 C N3 DT 1 1_555 E DA 36 F N1 DA 18 1_555 hydrog WATSON-CRICK B DT 1 C O4 DT 1 1_555 E DA 36 F N6 DA 18 1_555 hydrog WATSON-CRICK B DG 3 C N1 DG 3 1_555 E DC 34 F N3 DC 16 1_555 hydrog WATSON-CRICK B DG 3 C N2 DG 3 1_555 E DC 34 F O2 DC 16 1_555 hydrog WATSON-CRICK B DG 3 C O6 DG 3 1_555 E DC 34 F N4 DC 16 1_555 hydrog DT-DC MISPAIR B DT 4 C O4 DT 4 1_555 E DC 32 F N4 DC 14 1_555 hydrog WATSON-CRICK B DT 4 C N3 DT 4 1_555 E DA 33 F N1 DA 15 1_555 hydrog WATSON-CRICK B DT 4 C O4 DT 4 1_555 E DA 33 F N6 DA 15 1_555 hydrog WATSON-CRICK B DG 5 C N1 DG 5 1_555 E DC 32 F N3 DC 14 1_555 hydrog WATSON-CRICK B DG 5 C N2 DG 5 1_555 E DC 32 F O2 DC 14 1_555 hydrog WATSON-CRICK B DG 5 C O6 DG 5 1_555 E DC 32 F N4 DC 14 1_555 hydrog WATSON-CRICK B DT 6 C N3 DT 6 1_555 E DA 31 F N1 DA 13 1_555 hydrog WATSON-CRICK B DT 6 C O4 DT 6 1_555 E DA 31 F N6 DA 13 1_555 hydrog WATSON-CRICK B DT 7 C N3 DT 7 1_555 E DA 30 F N1 DA 12 1_555 hydrog WATSON-CRICK B DT 7 C O4 DT 7 1_555 E DA 30 F N6 DA 12 1_555 hydrog WATSON-CRICK B DT 8 C N3 DT 8 1_555 E DA 29 F N1 DA 11 1_555 hydrog WATSON-CRICK B DT 8 C O4 DT 8 1_555 E DA 29 F N6 DA 11 1_555 hydrog WATSON-CRICK B DT 9 C N3 DT 9 1_555 E DA 28 F N1 DA 10 1_555 hydrog WATSON-CRICK B DT 9 C O4 DT 9 1_555 E DA 28 F N6 DA 10 1_555 hydrog WATSON-CRICK B DA 10 C N1 DA 10 1_555 E DT 27 F N3 DT 9 1_555 hydrog WATSON-CRICK B DA 10 C N6 DA 10 1_555 E DT 27 F O4 DT 9 1_555 hydrog WATSON-CRICK B 5CM 11 C N3 5CM 11 1_555 E DG 26 F N1 DG 8 1_555 hydrog WATSON-CRICK B 5CM 11 C N4 5CM 11 1_555 E DG 26 F O6 DG 8 1_555 hydrog WATSON-CRICK B 5CM 11 C O2 5CM 11 1_555 E DG 26 F N2 DG 8 1_555 hydrog WATSON-CRICK B DG 12 C N1 DG 12 1_555 E 5CM 25 F N3 5CM 7 1_555 hydrog WATSON-CRICK B DG 12 C N2 DG 12 1_555 E 5CM 25 F O2 5CM 7 1_555 hydrog WATSON-CRICK B DG 12 C O6 DG 12 1_555 E 5CM 25 F N4 5CM 7 1_555 hydrog WATSON-CRICK B DA 13 C N1 DA 13 1_555 E DT 24 F N3 DT 6 1_555 hydrog WATSON-CRICK B DA 13 C N6 DA 13 1_555 E DT 24 F O4 DT 6 1_555 hydrog WATSON-CRICK B DC 14 C N3 DC 14 1_555 E DG 23 F N1 DG 5 1_555 hydrog WATSON-CRICK B DC 14 C N4 DC 14 1_555 E DG 23 F O6 DG 5 1_555 hydrog WATSON-CRICK B DC 14 C O2 DC 14 1_555 E DG 23 F N2 DG 5 1_555 hydrog DC-DG PAIR B DC 15 C O2 DC 15 1_555 E DG 22 F N2 DG 4 1_555 hydrog WATSON-CRICK B DT 16 C N3 DT 16 1_555 E DA 21 F N1 DA 3 1_555 hydrog WATSON-CRICK B DT 16 C O4 DT 16 1_555 E DA 21 F N6 DA 3 1_555 hydrog WATSON-CRICK B DC 17 C N3 DC 17 1_555 E DG 20 F N1 DG 2 1_555 hydrog WATSON-CRICK B DC 17 C N4 DC 17 1_555 E DG 20 F O6 DG 2 1_555 hydrog WATSON-CRICK B DC 17 C O2 DC 17 1_555 E DG 20 F N2 DG 2 1_555 hydrog DC-DG PAIR B DC 18 C O2 DC 18 1_555 E DG 19 F N2 DG 1 1_555 hydrog DC-DG PAIR B DC 18 C O2 DC 18 1_555 E DG 20 F N2 DG 2 1_555 TRANSCRIPTION transcription, transcription factor, methylated DNA A B K L F E A DT 1 A DT 1 A DT 16 A DT 16 0 B DT 1 C DT 1 B DT 16 C DT 16 0 K THR 153 B THR 1 K ASN 213 B ASN 61 0 L THR 153 D THR 1 L ASN 213 D ASN 61 0 F DG 20 E DG 1 F DA 35 E DA 16 0 E DG 20 F DG 2 E DA 35 F DA 17 0 5LUX PDB 1 1 5LUX CDX1_HUMAN UNP 2 153 P47902 TKDKYRVVYTDHQRLELEKEFHYSRYITIRRKSELAANLGLTERQVKIWFQNRRAKERKVNKK 5LUX PDB 3 1 5LUX 5LUX PDB 4 1 5LUX 5LUX PDB 5 1 5LUX 1 17 5LUX 1 17 5LUX A 1 1 17 153 215 5LUX 153 215 P47902 K 2 1 63 1 18 5LUX 1 18 5LUX B 3 1 18 153 215 5LUX 153 215 P47902 L 2 1 63 20 36 5LUX 20 36 5LUX F 4 1 17 19 36 5LUX 19 36 5LUX E 5 1 18 5 I 1 2 1