0.021839 0.000000 0.003478 0.000000 0.020929 0.000000 0.000000 0.000000 0.014746 0.00000 0.00000 0.00000 Martinez-Zapien, D. Legrand, P. McEwen, A.C. Pasquali, S. Dock-Bregeon, A.-C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 99.050 90.000 45.790 47.780 68.670 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C9 H13 N3 O10 P2 385.161 n CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE RNA linking Cl -1 35.453 CHLORIDE ION non-polymer C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking H2 O 18.015 WATER non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer Na 1 22.990 SODIUM ION non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 S P N 74 N O N 75 N O N 76 N P N 77 N O N 78 N O N 79 N O N 80 N O N 81 N C N 82 R C N 83 N O N 84 R C N 85 N O N 86 R C N 87 N O N 88 R C N 89 N N N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N C N 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N CL N 111 N O N 112 N P N 113 N O N 114 N O N 115 N O N 116 N C N 117 R C N 118 N O N 119 S C N 120 N O N 121 R C N 122 N O N 123 R C Y 124 N N Y 125 N C Y 126 N N Y 127 N C N 128 N C N 129 N O N 130 N N N 131 N C N 132 N N N 133 N N Y 134 N C N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N O N 150 N H N 151 N H N 152 N MG N 153 N NA N 154 N O N 155 N P N 156 N O N 157 N O N 158 N O N 159 N C N 160 R C N 161 N O N 162 S C N 163 N O N 164 R C N 165 N O N 166 R C N 167 N N N 168 N C N 169 N O N 170 N N N 171 N C N 172 N O N 173 N C N 174 N C N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N doub N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing Y 139 N sing Y 140 N sing Y 141 N doub N 142 N sing Y 143 N sing N 144 N sing Y 145 N doub N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N doub N 190 N sing N 191 N sing UK Nucleic Acids Res. NARHAD 0389 1362-4962 45 3568 3579 10.1093/nar/gkw1351 28082395 The crystal structure of the 5 functional domain of the transcription riboregulator 7SK. 2017 10.2210/pdb5lyu/pdb pdb_00005lyu 100 1 CCD 2010-01-29 ADSC QUANTUM 315r Si(111) SINGLE WAVELENGTH M x-ray 1 0.9797 1.0 BM30A ESRF 0.9797 SYNCHROTRON ESRF BEAMLINE BM30A 18675.945 7SK RNA 2 syn polymer 22.990 SODIUM ION 1 syn non-polymer 35.453 CHLORIDE ION 2 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer 18.015 water 229 nat water no yes GGGGAUCUGUCACCCCAUUGAUCGCCUUCGGGCUGAUCUGGCUGGCUAGGCGGGUCC(CCC) GGGGAUCUGUCACCCCAUUGAUCGCCUUCGGGCUGAUCUGGCUGGCUAGGCGGGUCCC A,B polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 2.02 39.14 VAPOR DIFFUSION, HANGING DROP 30% PEG 1000, 50 mM Tris pH 7.5, 50 to 75 mM NaCl, 50 mM MgCl2 277 -4.234 1 19 A 24 A 87 0.262 A_G24:CCC87_A 1 -18.066 -0.724 -0.055 -0.226 -4.152 1 19 A 25 A 86 3.536 A_G25:C86_A 2 -17.883 -0.518 0.071 -0.110 -9.983 1 19 A 26 A 85 1.183 A_G26:C85_A 3 -15.685 -0.565 0.031 -0.143 -6.973 1 20 A 27 A 84 1.308 A_A27:U84_A 4 -12.120 0.327 0.262 -0.061 -4.277 1 28 A 28 A 83 0.002 A_U28:G83_A 5 -9.657 2.462 0.369 -0.552 3.451 1 19 A 29 A 82 0.903 A_C29:G82_A 6 -12.500 0.470 -0.026 -0.110 -3.274 1 28 A 30 A 81 1.103 A_U30:G81_A 7 -11.478 2.136 0.138 -0.511 -7.421 1 19 A 31 A 80 -4.425 A_G31:C80_A 8 -15.951 -0.418 0.206 -0.260 -4.203 1 28 A 32 A 79 -2.456 A_U32:G79_A 9 -16.422 2.379 0.434 -0.617 -0.298 1 19 A 33 A 78 -1.460 A_C33:G78_A 10 -6.896 0.135 0.331 -0.123 18.178 1 19 A 35 A 74 0.870 A_C35:G74_A 11 -1.481 0.596 -0.323 0.008 22.196 1 19 A 36 A 73 2.524 A_C36:G73_A 12 -9.166 0.452 -0.409 -0.139 11.108 1 19 A 37 A 70 1.049 A_C37:G70_A 13 -14.558 0.520 -0.396 -0.208 -0.305 1 19 A 38 A 69 -0.301 A_C38:G69_A 14 -10.302 0.502 0.259 -0.293 -3.516 1 20 A 39 A 68 -0.235 A_A39:U68_A 15 -21.343 0.040 0.039 -0.149 -9.435 1 19 A 42 A 67 2.593 A_G42:C67_A 16 -7.007 -0.275 -0.094 -0.043 -1.398 1 20 A 43 A 66 3.669 A_A43:U66_A 17 -10.547 -0.181 -0.003 -0.007 10.064 1 20 A 44 A 65 1.432 A_U44:A65_A 18 -13.279 0.109 -0.278 -0.110 2.514 1 19 A 45 A 64 1.271 A_C45:G64_A 19 -10.348 0.549 -0.006 -0.214 4.648 1 19 A 46 A 62 -0.947 A_G46:C62_A 20 -4.099 -0.715 -0.036 -0.293 12.365 1 19 A 47 A 61 1.253 A_C47:G61_A 21 -11.124 0.709 -0.332 -0.287 6.370 1 19 A 48 A 60 -0.652 A_C48:G60_A 22 -4.056 0.446 -0.236 -0.217 -6.729 6 A A 48 D A 48 -111.273 A_U48A:G48D_A 23 -7.063 0.755 -0.040 -5.328 -3.470 1 19 B 24 B 87 -7.153 B_G24:CCC87_B 24 -15.205 -0.908 0.167 -0.263 -3.019 1 19 B 25 B 86 0.170 B_G25:C86_B 25 -16.888 -0.453 -0.060 -0.137 -7.447 1 19 B 26 B 85 1.475 B_G26:C85_B 26 -12.493 -0.631 -0.020 -0.044 -5.646 1 20 B 27 B 84 2.150 B_A27:U84_B 27 -14.425 -0.135 0.224 -0.142 -4.183 1 28 B 28 B 83 1.769 B_U28:G83_B 28 -9.993 2.495 0.339 -0.505 3.601 1 19 B 29 B 82 2.657 B_C29:G82_B 29 -12.183 0.490 -0.030 -0.059 -3.066 1 28 B 30 B 81 2.078 B_U30:G81_B 30 -11.196 2.148 0.120 -0.483 -8.042 1 19 B 31 B 80 -3.985 B_G31:C80_B 31 -16.123 -0.416 0.191 -0.247 -4.884 1 28 B 32 B 79 -1.678 B_U32:G79_B 32 -16.193 2.409 0.476 -0.611 2.159 1 19 B 33 B 78 0.280 B_C33:G78_B 33 -9.225 0.315 0.232 -0.080 9.755 1 19 B 35 B 74 1.212 B_C35:G74_B 34 2.470 0.471 -0.198 -0.041 19.200 1 19 B 36 B 73 2.203 B_C36:G73_B 35 -6.625 0.371 -0.621 -0.102 13.114 1 19 B 37 B 70 0.565 B_C37:G70_B 36 -14.774 0.511 -0.375 -0.153 1.604 1 19 B 38 B 69 0.058 B_C38:G69_B 37 -12.996 0.455 0.267 -0.294 -3.426 1 20 B 39 B 68 -0.808 B_A39:U68_B 38 -20.799 0.100 0.131 -0.179 -9.189 1 19 B 42 B 67 1.826 B_G42:C67_B 39 -8.908 -0.202 0.006 -0.046 -1.582 1 20 B 43 B 66 3.516 B_A43:U66_B 40 -10.330 -0.177 -0.022 -0.017 10.138 1 20 B 44 B 65 1.672 B_U44:A65_B 41 -12.489 0.114 -0.284 -0.116 2.136 1 19 B 45 B 64 1.564 B_C45:G64_B 42 -10.689 0.559 -0.006 -0.210 4.702 1 19 B 46 B 62 -0.051 B_G46:C62_B 43 -4.016 -0.698 -0.029 -0.256 12.168 1 19 B 47 B 61 1.587 B_C47:G61_B 44 -11.650 0.711 -0.334 -0.286 6.292 1 19 B 48 B 60 -1.711 B_C48:G60_B 45 -5.984 0.717 -0.200 -0.341 -2.980 6 A B 48 D B 48 -107.072 B_U48A:G48D_B 46 -3.431 1.113 -0.358 -4.651 2.650 39.004 A A 24 25 17.746 A A 87 86 3.142 11.674 0.223 -1.181 AA_G24G25:C86CCC87_AA 1 -2.229 3.389 37.216 -3.049 -0.579 2.535 28.267 A A 25 26 20.014 A A 86 85 3.318 9.546 1.034 -2.151 AA_G25G26:C85C86_AA 2 4.527 -9.491 26.255 -6.464 -1.141 2.854 34.069 A A 26 27 7.549 A A 85 84 3.091 4.411 -0.069 -1.693 AA_G26A27:U84C85_AA 3 -0.740 1.266 33.783 -3.529 0.011 3.108 39.960 A A 27 28 4.285 A A 84 83 3.210 2.926 -0.137 -1.332 AA_A27U28:G83U84_AA 4 0.223 -0.326 39.857 -2.274 0.225 2.238 24.582 A A 28 29 13.596 A A 83 82 2.836 5.697 0.131 -2.147 AA_U28C29:G82G83_AA 5 4.976 -11.876 23.406 -6.437 0.910 3.409 37.161 A A 29 30 3.631 A A 82 81 3.510 2.312 0.152 -1.600 AA_C29U30:G81G82_AA 6 0.488 -0.766 37.088 -2.836 -0.169 2.065 26.055 A A 30 31 25.626 A A 81 80 3.112 11.188 -1.000 -1.712 AA_U30G31:C80G81_AA 7 0.735 -1.684 23.557 -6.349 2.385 3.006 43.921 A A 31 32 8.743 A A 80 79 3.192 6.517 0.348 -1.081 AA_G31U32:G79C80_AA 8 -0.204 0.273 43.458 -2.034 -0.484 2.480 28.160 A A 32 33 10.758 A A 79 78 2.856 5.198 0.177 -1.837 AA_U32C33:G78G79_AA 9 2.702 -5.592 27.556 -4.778 0.157 2.995 90.947 A A 33 35 -3.370 A A 78 74 2.870 -4.802 2.367 -0.486 AA_C33C35:G74G78_AA 10 5.446 -3.822 90.720 -0.256 -1.564 2.966 33.212 A A 35 36 7.077 A A 74 73 3.380 4.019 0.342 -2.504 AA_C35C36:G73G74_AA 11 -5.348 9.418 32.550 -5.040 -1.476 3.250 46.116 A A 36 37 9.573 A A 73 70 3.576 7.469 1.227 -1.748 AA_C36C37:G70G73_AA 12 -0.618 0.792 45.536 -2.903 -1.622 2.834 32.567 A A 37 38 16.968 A A 70 69 3.491 9.329 -0.480 -1.940 AA_C37C38:G69G70_AA 13 -6.326 11.506 30.604 -5.085 -0.246 2.733 34.422 A A 38 39 15.321 A A 69 68 3.228 8.936 -0.069 -1.369 AA_C38A39:U68G69_AA 14 5.119 -8.777 32.890 -3.613 0.861 2.880 47.256 A A 39 42 11.166 A A 68 67 3.118 8.898 -1.600 -1.538 AA_A39G42:C67U68_AA 15 -2.843 3.568 46.375 -2.590 1.781 2.452 27.371 A A 42 43 13.691 A A 67 66 2.984 6.414 -1.202 -2.324 AA_G42A43:U66C67_AA 16 -2.128 4.543 26.539 -6.252 2.095 2.740 31.239 A A 43 44 12.737 A A 66 65 2.962 6.801 0.053 -0.710 AA_A43U44:A65U66_AA 17 2.275 -4.261 30.425 -2.459 0.282 3.152 38.734 A A 44 45 7.784 A A 65 64 3.417 5.148 0.883 -1.604 AA_U44C45:G64A65_AA 18 -1.381 2.088 38.379 -3.054 -1.501 2.991 37.768 A A 45 46 6.474 A A 64 62 3.252 4.181 1.422 -1.554 AA_C45G46:C62G64_AA 19 -1.987 3.076 37.494 -2.918 -2.443 3.078 36.601 A A 46 47 4.104 A A 62 61 3.185 2.575 0.001 -1.476 AA_G46C47:G61C62_AA 20 0.317 -0.506 36.512 -2.690 0.040 3.085 31.702 A A 47 48 10.014 A A 61 60 3.460 5.444 -0.058 -1.954 AA_C47C48:G60G61_AA 21 -0.754 1.388 31.234 -4.587 -0.034 3.316 93.761 A A A 48 48 4.315 D A A 60 48 3.459 6.293 -1.564 -0.815 AA_C48U48A:G48DG60_AA 22 7.068 -4.846 93.394 -0.678 1.206 2.612 36.559 B B 24 25 16.414 B B 87 86 3.109 10.164 0.233 -1.450 BB_G24G25:C86CCC87_BB 23 2.165 -3.497 35.099 -3.563 -0.105 2.412 29.023 B B 25 26 19.898 B B 86 85 3.255 9.783 1.025 -2.080 BB_G25G26:C85C86_BB 24 0.836 -1.701 27.345 -6.074 -1.881 2.701 34.106 B B 26 27 9.008 B B 85 84 3.011 5.259 -0.394 -1.973 BB_G26A27:U84C85_BB 25 -2.405 4.119 33.627 -4.098 0.337 3.058 40.242 B B 27 28 6.704 B B 84 83 3.221 4.603 0.147 -1.318 BB_A27U28:G83U84_BB 26 0.212 -0.309 39.988 -2.417 -0.191 2.105 23.775 B B 28 29 16.021 B B 83 82 2.830 6.470 0.126 -2.174 BB_U28C29:G82G83_BB 27 4.966 -12.297 22.351 -6.934 0.966 3.373 36.470 B B 29 30 4.381 B B 82 81 3.498 2.739 0.138 -1.618 BB_C29U30:G81G82_BB 28 0.732 -1.171 36.363 -2.985 -0.114 2.086 25.648 B B 30 31 25.626 B B 81 80 3.140 11.016 -1.025 -1.720 BB_U30G31:C80G81_BB 29 0.736 -1.712 23.186 -6.492 2.483 3.002 43.895 B B 31 32 8.701 B B 80 79 3.189 6.483 0.356 -1.069 BB_G31U32:G79C80_BB 30 -0.610 0.818 43.433 -2.016 -0.532 2.518 28.428 B B 32 33 8.738 B B 79 78 2.801 4.258 0.252 -1.751 BB_U32C33:G78G79_BB 31 4.536 -9.309 27.752 -4.370 0.345 3.278 88.930 B B 33 35 -1.698 B B 78 74 3.187 -2.378 2.415 -0.767 BB_C33C35:G74G78_BB 32 3.632 -2.593 88.846 -0.499 -1.649 3.010 32.666 B B 35 36 3.405 B B 74 73 3.167 1.912 0.380 -1.982 BB_C35C36:G73G74_BB 33 -2.619 4.663 32.509 -3.837 -1.104 2.985 46.426 B B 36 37 11.709 B B 73 70 3.452 9.171 1.268 -1.750 BB_C36C37:G70G73_BB 34 -2.839 3.625 45.477 -2.991 -1.848 2.816 33.060 B B 37 38 16.851 B B 70 69 3.470 9.395 -0.465 -1.938 BB_C37C38:G69G70_BB 35 -6.859 12.304 30.999 -4.985 -0.336 2.695 34.031 B B 38 39 16.813 B B 69 68 3.221 9.694 -0.029 -1.373 BB_C38A39:U68G69_BB 36 3.476 -6.028 32.479 -3.779 0.564 2.993 47.445 B B 39 42 8.292 B B 68 67 3.121 6.649 -1.645 -1.445 BB_A39G42:C67U68_BB 37 -2.931 3.655 46.917 -2.301 1.821 2.282 27.710 B B 42 43 16.090 B B 67 66 2.945 7.605 -1.194 -2.308 BB_G42A43:U66C67_BB 38 -1.758 3.719 26.608 -6.319 2.147 2.719 31.061 B B 43 44 13.697 B B 66 65 2.961 7.264 0.070 -0.702 BB_A43U44:A65U66_BB 39 2.254 -4.250 30.138 -2.541 0.251 3.172 38.622 B B 44 45 7.774 B B 65 64 3.428 5.127 0.893 -1.591 BB_U44C45:G64A65_BB 40 -1.042 1.579 38.280 -3.046 -1.480 3.050 36.659 B B 45 46 4.924 B B 64 62 3.269 3.092 1.412 -1.566 BB_C45G46:C62G64_BB 41 -2.039 3.247 36.477 -2.901 -2.515 3.095 36.279 B B 46 47 3.699 B B 62 61 3.192 2.301 -0.039 -1.479 BB_G46C47:G61C62_BB 42 0.426 -0.684 36.206 -2.686 0.121 2.985 32.249 B B 47 48 12.201 B B 61 60 3.440 6.729 -0.308 -1.924 BB_C47C48:G60G61_BB 43 -1.025 1.858 31.542 -4.653 0.374 3.379 89.149 A B B 48 48 2.750 D B B 60 48 3.523 3.856 -1.358 -1.140 BB_C48U48A:G48DG60_BB 44 7.781 -5.548 88.814 -0.896 1.137 pdbx_audit_support struct_conn entity chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_conn_type repository Initial release Database references Author supporting evidence Derived calculations Data collection Structure summary Data collection Database references Derived calculations Refinement description 1 0 2017-01-25 1 1 2017-05-03 1 2 2017-08-30 1 3 2018-04-18 1 4 2024-01-17 _pdbx_audit_support.funding_organization _entity.pdbx_description _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id France French National Research Agency ANR-06-BLAN-0072 France French National Research Agency ANR-12-BSV5-0018 France French National Research Agency ANR-10-INSB-05-01 N PDBE Y PDBE 2016-09-28 REL REL NA SODIUM ION CL CHLORIDE ION MG MAGNESIUM ION HOH water 9606 HUMAN Homo sapiens sample 1 58 5LYS PDB experimental model NA 2 2 NA NA 101 A CL 1 3 CL CL 102 A MG 1 4 MG MG 101 B CL 2 3 CL CL 102 B HOH 211 5 HOH HOH 201 A HOH 55 5 HOH HOH 202 A HOH 15 5 HOH HOH 203 A HOH 186 5 HOH HOH 204 A HOH 98 5 HOH HOH 205 A HOH 105 5 HOH HOH 206 A HOH 121 5 HOH HOH 207 A HOH 2 5 HOH HOH 208 A HOH 16 5 HOH HOH 209 A HOH 38 5 HOH HOH 210 A HOH 225 5 HOH HOH 211 A HOH 94 5 HOH HOH 212 A HOH 116 5 HOH HOH 213 A HOH 118 5 HOH HOH 214 A HOH 75 5 HOH HOH 215 A HOH 133 5 HOH HOH 216 A HOH 40 5 HOH HOH 217 A HOH 141 5 HOH HOH 218 A HOH 87 5 HOH HOH 219 A HOH 4 5 HOH HOH 220 A HOH 93 5 HOH HOH 221 A HOH 150 5 HOH HOH 222 A HOH 166 5 HOH HOH 223 A HOH 72 5 HOH HOH 224 A HOH 178 5 HOH HOH 225 A HOH 29 5 HOH HOH 226 A HOH 193 5 HOH HOH 227 A HOH 129 5 HOH HOH 228 A HOH 37 5 HOH HOH 229 A HOH 114 5 HOH HOH 230 A HOH 25 5 HOH HOH 231 A HOH 12 5 HOH HOH 232 A HOH 113 5 HOH HOH 233 A HOH 62 5 HOH HOH 234 A HOH 227 5 HOH HOH 235 A HOH 177 5 HOH HOH 236 A HOH 88 5 HOH HOH 237 A HOH 19 5 HOH HOH 238 A HOH 213 5 HOH HOH 239 A HOH 184 5 HOH HOH 240 A HOH 179 5 HOH HOH 241 A HOH 45 5 HOH HOH 242 A HOH 192 5 HOH HOH 243 A HOH 28 5 HOH HOH 244 A HOH 18 5 HOH HOH 245 A HOH 176 5 HOH HOH 246 A HOH 220 5 HOH HOH 247 A HOH 122 5 HOH HOH 248 A HOH 132 5 HOH HOH 249 A HOH 84 5 HOH HOH 250 A HOH 1 5 HOH HOH 251 A HOH 30 5 HOH HOH 252 A HOH 142 5 HOH HOH 253 A HOH 74 5 HOH HOH 254 A HOH 224 5 HOH HOH 255 A HOH 110 5 HOH HOH 256 A HOH 66 5 HOH HOH 257 A HOH 151 5 HOH HOH 258 A HOH 64 5 HOH HOH 259 A HOH 222 5 HOH HOH 260 A HOH 77 5 HOH HOH 261 A HOH 33 5 HOH HOH 262 A HOH 205 5 HOH HOH 263 A HOH 97 5 HOH HOH 264 A HOH 17 5 HOH HOH 265 A HOH 60 5 HOH HOH 266 A HOH 124 5 HOH HOH 267 A HOH 49 5 HOH HOH 268 A HOH 57 5 HOH HOH 269 A HOH 91 5 HOH HOH 270 A HOH 83 5 HOH HOH 271 A HOH 169 5 HOH HOH 272 A HOH 147 5 HOH HOH 273 A HOH 51 5 HOH HOH 274 A HOH 175 5 HOH HOH 275 A HOH 92 5 HOH HOH 276 A HOH 90 5 HOH HOH 277 A HOH 81 5 HOH HOH 278 A HOH 157 5 HOH HOH 279 A HOH 96 5 HOH HOH 280 A HOH 161 5 HOH HOH 281 A HOH 204 5 HOH HOH 282 A HOH 59 5 HOH HOH 283 A HOH 216 5 HOH HOH 284 A HOH 89 5 HOH HOH 285 A HOH 219 5 HOH HOH 286 A HOH 203 5 HOH HOH 287 A HOH 44 5 HOH HOH 288 A HOH 228 5 HOH HOH 289 A HOH 191 5 HOH HOH 290 A HOH 152 5 HOH HOH 291 A HOH 165 5 HOH HOH 292 A HOH 173 5 HOH HOH 293 A HOH 117 5 HOH HOH 294 A HOH 209 5 HOH HOH 295 A HOH 65 5 HOH HOH 296 A HOH 153 5 HOH HOH 297 A HOH 206 5 HOH HOH 298 A HOH 218 5 HOH HOH 299 A HOH 170 5 HOH HOH 300 A HOH 168 5 HOH HOH 301 A HOH 172 5 HOH HOH 302 A HOH 221 5 HOH HOH 303 A HOH 171 5 HOH HOH 304 A HOH 217 5 HOH HOH 305 A HOH 188 5 HOH HOH 201 B HOH 39 5 HOH HOH 202 B HOH 187 5 HOH HOH 203 B HOH 9 5 HOH HOH 204 B HOH 14 5 HOH HOH 205 B HOH 11 5 HOH HOH 206 B HOH 134 5 HOH HOH 207 B HOH 143 5 HOH HOH 208 B HOH 56 5 HOH HOH 209 B HOH 70 5 HOH HOH 210 B HOH 112 5 HOH HOH 211 B HOH 182 5 HOH HOH 212 B HOH 111 5 HOH HOH 213 B HOH 58 5 HOH HOH 214 B HOH 24 5 HOH HOH 215 B HOH 6 5 HOH HOH 216 B HOH 53 5 HOH HOH 217 B HOH 35 5 HOH HOH 218 B HOH 13 5 HOH HOH 219 B HOH 22 5 HOH HOH 220 B HOH 68 5 HOH HOH 221 B HOH 180 5 HOH HOH 222 B HOH 167 5 HOH HOH 223 B HOH 130 5 HOH HOH 224 B HOH 10 5 HOH HOH 225 B HOH 181 5 HOH HOH 226 B HOH 21 5 HOH HOH 227 B HOH 80 5 HOH HOH 228 B HOH 199 5 HOH HOH 229 B HOH 95 5 HOH HOH 230 B HOH 23 5 HOH HOH 231 B HOH 31 5 HOH HOH 232 B HOH 226 5 HOH HOH 233 B HOH 223 5 HOH HOH 234 B HOH 156 5 HOH HOH 235 B HOH 137 5 HOH HOH 236 B HOH 26 5 HOH HOH 237 B HOH 149 5 HOH HOH 238 B HOH 189 5 HOH HOH 239 B HOH 128 5 HOH HOH 240 B HOH 214 5 HOH HOH 241 B HOH 106 5 HOH HOH 242 B HOH 135 5 HOH HOH 243 B HOH 36 5 HOH HOH 244 B HOH 34 5 HOH HOH 245 B HOH 5 5 HOH HOH 246 B HOH 73 5 HOH HOH 247 B HOH 8 5 HOH HOH 248 B HOH 107 5 HOH HOH 249 B HOH 101 5 HOH HOH 250 B HOH 99 5 HOH HOH 251 B HOH 139 5 HOH HOH 252 B HOH 3 5 HOH HOH 253 B HOH 69 5 HOH HOH 254 B HOH 196 5 HOH HOH 255 B HOH 126 5 HOH HOH 256 B HOH 78 5 HOH HOH 257 B HOH 125 5 HOH HOH 258 B HOH 155 5 HOH HOH 259 B HOH 127 5 HOH HOH 260 B HOH 82 5 HOH HOH 261 B HOH 207 5 HOH HOH 262 B HOH 27 5 HOH HOH 263 B HOH 120 5 HOH HOH 264 B HOH 109 5 HOH HOH 265 B HOH 20 5 HOH HOH 266 B HOH 76 5 HOH HOH 267 B HOH 108 5 HOH HOH 268 B HOH 200 5 HOH HOH 269 B HOH 43 5 HOH HOH 270 B HOH 190 5 HOH HOH 271 B HOH 102 5 HOH HOH 272 B HOH 145 5 HOH HOH 273 B HOH 185 5 HOH HOH 274 B HOH 115 5 HOH HOH 275 B HOH 7 5 HOH HOH 276 B HOH 52 5 HOH HOH 277 B HOH 85 5 HOH HOH 278 B HOH 41 5 HOH HOH 279 B HOH 174 5 HOH HOH 280 B HOH 61 5 HOH HOH 281 B HOH 42 5 HOH HOH 282 B HOH 148 5 HOH HOH 283 B HOH 100 5 HOH HOH 284 B HOH 212 5 HOH HOH 285 B HOH 103 5 HOH HOH 286 B HOH 50 5 HOH HOH 287 B HOH 123 5 HOH HOH 288 B HOH 32 5 HOH HOH 289 B HOH 144 5 HOH HOH 290 B HOH 67 5 HOH HOH 291 B HOH 146 5 HOH HOH 292 B HOH 79 5 HOH HOH 293 B HOH 46 5 HOH HOH 294 B HOH 71 5 HOH HOH 295 B HOH 131 5 HOH HOH 296 B HOH 154 5 HOH HOH 297 B HOH 162 5 HOH HOH 298 B HOH 63 5 HOH HOH 299 B HOH 54 5 HOH HOH 300 B HOH 86 5 HOH HOH 301 B HOH 164 5 HOH HOH 302 B HOH 104 5 HOH HOH 303 B HOH 208 5 HOH HOH 304 B HOH 119 5 HOH HOH 305 B HOH 47 5 HOH HOH 306 B HOH 194 5 HOH HOH 307 B HOH 160 5 HOH HOH 308 B HOH 195 5 HOH HOH 309 B HOH 140 5 HOH HOH 310 B HOH 48 5 HOH HOH 311 B HOH 159 5 HOH HOH 312 B HOH 136 5 HOH HOH 313 B HOH 202 5 HOH HOH 314 B HOH 215 5 HOH HOH 315 B HOH 163 5 HOH HOH 316 B HOH 183 5 HOH HOH 317 B HOH 198 5 HOH HOH 318 B HOH 197 5 HOH HOH 319 B HOH 201 5 HOH HOH 320 B HOH 138 5 HOH HOH 321 B HOH 158 5 HOH HOH 322 B HOH 229 5 HOH HOH 323 B HOH 210 5 HOH HOH 324 B G 23 n 1 G 23 A G 24 n 2 G 24 A G 25 n 3 G 25 A G 26 n 4 G 26 A A 27 n 5 A 27 A U 28 n 6 U 28 A C 29 n 7 C 29 A U 30 n 8 U 30 A G 31 n 9 G 31 A U 32 n 10 U 32 A C 33 n 11 C 33 A A 34 n 12 A 34 A C 35 n 13 C 35 A C 36 n 14 C 36 A C 37 n 15 C 37 A C 38 n 16 C 38 A A 39 n 17 A 39 A U 40 n 18 U 40 A U 41 n 19 U 41 A G 42 n 20 G 42 A A 43 n 21 A 43 A U 44 n 22 U 44 A C 45 n 23 C 45 A G 46 n 24 G 46 A C 47 n 25 C 47 A C 48 n 26 C 48 A U 48 n 27 A U 48 A U 48 n 28 B U 48 A C 48 n 29 C C 48 A G 48 n 30 D G 48 A G 60 n 31 G 60 A G 61 n 32 G 61 A C 62 n 33 C 62 A U 63 n 34 U 63 A G 64 n 35 G 64 A A 65 n 36 A 65 A U 66 n 37 U 66 A C 67 n 38 C 67 A U 68 n 39 U 68 A G 69 n 40 G 69 A G 70 n 41 G 70 A C 71 n 42 C 71 A U 72 n 43 U 72 A G 73 n 44 G 73 A G 74 n 45 G 74 A C 75 n 46 C 75 A U 76 n 47 U 76 A A 77 n 48 A 77 A G 78 n 49 G 78 A G 79 n 50 G 79 A C 80 n 51 C 80 A G 81 n 52 G 81 A G 82 n 53 G 82 A G 83 n 54 G 83 A U 84 n 55 U 84 A C 85 n 56 C 85 A C 86 n 57 C 86 A CCC 87 n 58 CCC 87 A G 23 n 1 G 23 B G 24 n 2 G 24 B G 25 n 3 G 25 B G 26 n 4 G 26 B A 27 n 5 A 27 B U 28 n 6 U 28 B C 29 n 7 C 29 B U 30 n 8 U 30 B G 31 n 9 G 31 B U 32 n 10 U 32 B C 33 n 11 C 33 B A 34 n 12 A 34 B C 35 n 13 C 35 B C 36 n 14 C 36 B C 37 n 15 C 37 B C 38 n 16 C 38 B A 39 n 17 A 39 B U 40 n 18 U 40 B U 41 n 19 U 41 B G 42 n 20 G 42 B A 43 n 21 A 43 B U 44 n 22 U 44 B C 45 n 23 C 45 B G 46 n 24 G 46 B C 47 n 25 C 47 B C 48 n 26 C 48 B U 48 n 27 A U 48 B U 48 n 28 B U 48 B C 48 n 29 C C 48 B G 48 n 30 D G 48 B G 60 n 31 G 60 B G 61 n 32 G 61 B C 62 n 33 C 62 B U 63 n 34 U 63 B G 64 n 35 G 64 B A 65 n 36 A 65 B U 66 n 37 U 66 B C 67 n 38 C 67 B U 68 n 39 U 68 B G 69 n 40 G 69 B G 70 n 41 G 70 B C 71 n 42 C 71 B U 72 n 43 U 72 B G 73 n 44 G 73 B G 74 n 45 G 74 B C 75 n 46 C 75 B U 76 n 47 U 76 B A 77 n 48 A 77 B G 78 n 49 G 78 B G 79 n 50 G 79 B C 80 n 51 C 80 B G 81 n 52 G 81 B G 82 n 53 G 82 B G 83 n 54 G 83 B U 84 n 55 U 84 B C 85 n 56 C 85 B C 86 n 57 C 86 B CCC 87 n 58 CCC 87 B 2.3935 0.2929 0.4778 0.7439 0.3258 3.9188 0.0638 0.3318 0.0130 -0.0578 0.1261 -0.0692 -0.1170 0.3811 -0.1900 -0.1501 -0.0161 0.0115 -0.1734 0.0457 -0.0870 refined 10.2009 -0.0652 30.7894 X-RAY DIFFRACTION 2.3973 -0.0134 -0.6351 0.6000 0.5369 1.7011 0.0714 -0.0270 -0.1668 0.0482 0.0057 0.0296 -0.0004 -0.2024 -0.0771 -0.1033 0.0090 -0.0180 -0.1614 -0.0252 -0.1253 refined -13.6249 0.3211 33.7720 X-RAY DIFFRACTION A 23 A 87 X-RAY DIFFRACTION 1 { A|23 - A|87 } B 23 B 87 X-RAY DIFFRACTION 2 { B|23 - B|87 } author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric A A 34 B A OP1 A 12 1_555 A NA 101 C NA NA 1_555 A A 34 A A OP2 A 12 1_555 20.3 A A 34 B A OP1 A 12 1_555 A NA 101 C NA NA 1_555 A HOH 230 G O HOH 1_555 115.2 A A 34 A A OP2 A 12 1_555 A NA 101 C NA NA 1_555 A HOH 230 G O HOH 1_555 111.7 A A 34 B A OP1 A 12 1_555 A NA 101 C NA NA 1_555 A HOH 233 G O HOH 1_555 174.8 A A 34 A A OP2 A 12 1_555 A NA 101 C NA NA 1_555 A HOH 233 G O HOH 1_555 157.0 A HOH 230 G O HOH 1_555 A NA 101 C NA NA 1_555 A HOH 233 G O HOH 1_555 59.9 A A 34 B A OP1 A 12 1_555 A NA 101 C NA NA 1_555 A HOH 288 G O HOH 1_555 92.2 A A 34 A A OP2 A 12 1_555 A NA 101 C NA NA 1_555 A HOH 288 G O HOH 1_555 102.0 A HOH 230 G O HOH 1_555 A NA 101 C NA NA 1_555 A HOH 288 G O HOH 1_555 143.6 A HOH 233 G O HOH 1_555 A NA 101 C NA NA 1_555 A HOH 288 G O HOH 1_555 93.0 A A 34 B A OP1 A 12 1_555 A NA 101 C NA NA 1_555 A HOH 297 G O HOH 1_555 113.2 A A 34 A A OP2 A 12 1_555 A NA 101 C NA NA 1_555 A HOH 297 G O HOH 1_555 93.7 A HOH 230 G O HOH 1_555 A NA 101 C NA NA 1_555 A HOH 297 G O HOH 1_555 90.2 A HOH 233 G O HOH 1_555 A NA 101 C NA NA 1_555 A HOH 297 G O HOH 1_555 66.2 A HOH 288 G O HOH 1_555 A NA 101 C NA NA 1_555 A HOH 297 G O HOH 1_555 101.0 B HOH 229 H O HOH 1_555 B MG 101 E MG MG 1_555 B HOH 269 H O HOH 1_555 93.3 B HOH 229 H O HOH 1_555 B MG 101 E MG MG 1_555 B HOH 314 H O HOH 1_555 91.8 B HOH 269 H O HOH 1_555 B MG 101 E MG MG 1_555 B HOH 314 H O HOH 1_555 91.8 B HOH 229 H O HOH 1_555 B MG 101 E MG MG 1_555 B HOH 318 H O HOH 1_555 88.7 B HOH 269 H O HOH 1_555 B MG 101 E MG MG 1_555 B HOH 318 H O HOH 1_555 173.4 B HOH 314 H O HOH 1_555 B MG 101 E MG MG 1_555 B HOH 318 H O HOH 1_555 81.8 B HOH 229 H O HOH 1_555 B MG 101 E MG MG 1_555 B HOH 319 H O HOH 1_555 90.2 B HOH 269 H O HOH 1_555 B MG 101 E MG MG 1_555 B HOH 319 H O HOH 1_555 105.6 B HOH 314 H O HOH 1_555 B MG 101 E MG MG 1_555 B HOH 319 H O HOH 1_555 162.3 B HOH 318 H O HOH 1_555 B MG 101 E MG MG 1_555 B HOH 319 H O HOH 1_555 80.7 B HOH 229 H O HOH 1_555 B MG 101 E MG MG 1_555 B HOH 320 H O HOH 1_555 175.8 B HOH 269 H O HOH 1_555 B MG 101 E MG MG 1_555 B HOH 320 H O HOH 1_555 89.5 B HOH 314 H O HOH 1_555 B MG 101 E MG MG 1_555 B HOH 320 H O HOH 1_555 85.0 B HOH 318 H O HOH 1_555 B MG 101 E MG MG 1_555 B HOH 320 H O HOH 1_555 88.2 B HOH 319 H O HOH 1_555 B MG 101 E MG MG 1_555 B HOH 320 H O HOH 1_555 92.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 -9.70 1.50 119.60 109.90 A A A OP1 P OP2 G G G 23 23 23 N 1 14.08 1.10 110.50 124.58 A A A O3' P OP2 C CCC CCC 86 87 87 Y 1 -9.72 1.50 119.60 109.88 B B B OP1 P OP2 G G G 23 23 23 N 1 9.26 1.10 110.50 119.76 B B B O3' P OP2 C CCC CCC 86 87 87 Y 1 A A P OP3 G G 23 23 -0.120 0.012 1.607 1.487 N 1 B B P OP3 G G 23 23 -0.122 0.012 1.607 1.485 N 113.740 58.6500 24.630 2.6653 0.0000 5.0623 -0.5550 0.0000 -2.1103 0.9587 0.9347 0.2396 0.1913 0.1935 2.2000 28.3200 553 13139 4.2100 87.1700 0.6060 RANDOM 1 THROUGHOUT 0.000 FOURIER SYNTHESIS 0.2750 0.2540 5LYS 0.316 2.2000 28.3200 230 2706 63.04 55.62 4 2472 0 116 634 SINUSOIDAL 2.000 126 HARMONIC 5.000 2994 HARMONIC 20.000 2 SEMIHARMONIC 5.000 504 SEMIHARMONIC 5.000 3246 SEMIHARMONIC 4.000 0.010 2994 HARMONIC 2.000 0.810 4668 HARMONIC 2.000 23.650 0.3018 0.2356 0.2383 2.3800 72 1586 1658 7 4.3400 54.1500 59.76 2.2 30 5LYU 13144 0.999 0.039 1 18.57 3.4 87.3 0.939 2.20 2.33 0.97 0.425 1 2.38 52.0 data scaling XSCALE refinement BUSTER-TNT 2.10.2 data extraction PDB_EXTRACT 3.20 data reduction XDS phasing PHASER N The native crystal structure of 7SK 5'-hairpin 1 N N 1 N N 2 N N 3 N N 4 N N 3 N N 5 N N 5 N N covale 1.602 both A C 86 A O3' C 57 1_555 A CCC 87 A P CCC 58 1_555 covale 1.676 both B C 86 B O3' C 57 1_555 B CCC 87 B P CCC 58 1_555 metalc 2.348 B A A 34 A OP1 A 12 1_555 A NA 101 C NA NA 1_555 metalc 2.820 A A A 34 A OP2 A 12 1_555 A NA 101 C NA NA 1_555 metalc 2.820 A NA 101 C NA NA 1_555 A HOH 230 G O HOH 1_555 metalc 2.852 A NA 101 C NA NA 1_555 A HOH 233 G O HOH 1_555 metalc 2.546 A NA 101 C NA NA 1_555 A HOH 288 G O HOH 1_555 metalc 2.551 A NA 101 C NA NA 1_555 A HOH 297 G O HOH 1_555 metalc 2.535 B MG 101 E MG MG 1_555 B HOH 229 H O HOH 1_555 metalc 1.940 B MG 101 E MG MG 1_555 B HOH 269 H O HOH 1_555 metalc 1.984 B MG 101 E MG MG 1_555 B HOH 314 H O HOH 1_555 metalc 2.242 B MG 101 E MG MG 1_555 B HOH 318 H O HOH 1_555 metalc 1.937 B MG 101 E MG MG 1_555 B HOH 319 H O HOH 1_555 metalc 2.022 B MG 101 E MG MG 1_555 B HOH 320 H O HOH 1_555 hydrog WATSON-CRICK A G 24 A N1 G 2 1_555 A CCC 87 A N3 CCC 58 1_555 hydrog WATSON-CRICK A G 24 A N2 G 2 1_555 A CCC 87 A O2 CCC 58 1_555 hydrog WATSON-CRICK A G 24 A O6 G 2 1_555 A CCC 87 A N4 CCC 58 1_555 hydrog WATSON-CRICK A G 25 A N1 G 3 1_555 A C 86 A N3 C 57 1_555 hydrog WATSON-CRICK A G 25 A N2 G 3 1_555 A C 86 A O2 C 57 1_555 hydrog WATSON-CRICK A G 25 A O6 G 3 1_555 A C 86 A N4 C 57 1_555 hydrog WATSON-CRICK A G 26 A N1 G 4 1_555 A C 85 A N3 C 56 1_555 hydrog WATSON-CRICK A G 26 A N2 G 4 1_555 A C 85 A O2 C 56 1_555 hydrog WATSON-CRICK A G 26 A O6 G 4 1_555 A C 85 A N4 C 56 1_555 hydrog WATSON-CRICK A A 27 A N1 A 5 1_555 A U 84 A N3 U 55 1_555 hydrog WATSON-CRICK A A 27 A N6 A 5 1_555 A U 84 A O4 U 55 1_555 hydrog TYPE_28_PAIR A U 28 A N3 U 6 1_555 A G 83 A O6 G 54 1_555 hydrog TYPE_28_PAIR A U 28 A O2 U 6 1_555 A G 83 A N1 G 54 1_555 hydrog WATSON-CRICK A C 29 A N3 C 7 1_555 A G 82 A N1 G 53 1_555 hydrog WATSON-CRICK A C 29 A N4 C 7 1_555 A G 82 A O6 G 53 1_555 hydrog WATSON-CRICK A C 29 A O2 C 7 1_555 A G 82 A N2 G 53 1_555 hydrog TYPE_28_PAIR A U 30 A N3 U 8 1_555 A G 81 A O6 G 52 1_555 hydrog TYPE_28_PAIR A U 30 A O2 U 8 1_555 A G 81 A N1 G 52 1_555 hydrog G-A MISPAIR A G 31 A N7 G 9 1_555 A A 77 A N6 A 48 1_555 hydrog WATSON-CRICK A G 31 A N1 G 9 1_555 A C 80 A N3 C 51 1_555 hydrog WATSON-CRICK A G 31 A N2 G 9 1_555 A C 80 A O2 C 51 1_555 hydrog WATSON-CRICK A G 31 A O6 G 9 1_555 A C 80 A N4 C 51 1_555 hydrog U-A PAIR A U 32 A O4 U 10 1_555 A A 77 A N6 A 48 1_555 hydrog TYPE_28_PAIR A U 32 A N3 U 10 1_555 A G 79 A O6 G 50 1_555 hydrog TYPE_28_PAIR A U 32 A O2 U 10 1_555 A G 79 A N1 G 50 1_555 hydrog WATSON-CRICK A A C 33 A N3 C 11 1_555 A G 78 A N1 G 49 1_555 hydrog WATSON-CRICK B A C 33 A N3 C 11 1_555 A G 78 A N1 G 49 1_555 hydrog WATSON-CRICK A A C 33 A N4 C 11 1_555 A G 78 A O6 G 49 1_555 hydrog WATSON-CRICK B A C 33 A N4 C 11 1_555 A G 78 A O6 G 49 1_555 hydrog WATSON-CRICK A A C 33 A O2 C 11 1_555 A G 78 A N2 G 49 1_555 hydrog WATSON-CRICK B A C 33 A O2 C 11 1_555 A G 78 A N2 G 49 1_555 hydrog A-G MISPAIR A A A 34 A N6 A 12 1_555 A G 69 A N7 G 40 1_555 hydrog A-G MISPAIR B A A 34 A N6 A 12 1_555 A G 69 A N7 G 40 1_555 hydrog WATSON-CRICK A A A C 35 A N3 C 13 1_555 A G 74 A N1 G 45 1_555 hydrog WATSON-CRICK B B A C 35 A N3 C 13 1_555 A G 74 A N1 G 45 1_555 hydrog WATSON-CRICK A A A C 35 A N4 C 13 1_555 A G 74 A O6 G 45 1_555 hydrog WATSON-CRICK B B A C 35 A N4 C 13 1_555 A G 74 A O6 G 45 1_555 hydrog WATSON-CRICK A A A C 35 A O2 C 13 1_555 A G 74 A N2 G 45 1_555 hydrog WATSON-CRICK B B A C 35 A O2 C 13 1_555 A G 74 A N2 G 45 1_555 hydrog WATSON-CRICK A A C 36 A N3 C 14 1_555 A G 73 A N1 G 44 1_555 hydrog WATSON-CRICK B A C 36 A N3 C 14 1_555 A G 73 A N1 G 44 1_555 hydrog WATSON-CRICK A A C 36 A N4 C 14 1_555 A G 73 A O6 G 44 1_555 hydrog WATSON-CRICK B A C 36 A N4 C 14 1_555 A G 73 A O6 G 44 1_555 hydrog WATSON-CRICK A A C 36 A O2 C 14 1_555 A G 73 A N2 G 44 1_555 hydrog WATSON-CRICK B A C 36 A O2 C 14 1_555 A G 73 A N2 G 44 1_555 hydrog WATSON-CRICK A C 37 A N3 C 15 1_555 A G 70 A N1 G 41 1_555 hydrog WATSON-CRICK A C 37 A N4 C 15 1_555 A G 70 A O6 G 41 1_555 hydrog WATSON-CRICK A C 37 A O2 C 15 1_555 A G 70 A N2 G 41 1_555 hydrog WATSON-CRICK A C 38 A N3 C 16 1_555 A G 69 A N1 G 40 1_555 hydrog WATSON-CRICK A C 38 A N4 C 16 1_555 A G 69 A O6 G 40 1_555 hydrog WATSON-CRICK A C 38 A O2 C 16 1_555 A G 69 A N2 G 40 1_555 hydrog WATSON-CRICK A A 39 A N1 A 17 1_555 A U 68 A N3 U 39 1_555 hydrog WATSON-CRICK A A 39 A N6 A 17 1_555 A U 68 A O4 U 39 1_555 hydrog HOOGSTEEN A U 40 A N3 U 18 1_555 A A 43 A N7 A 21 1_555 hydrog HOOGSTEEN A U 40 A O4 U 18 1_555 A A 43 A N6 A 21 1_555 hydrog G-U MISPAIR A G 42 A O6 G 20 1_555 A U 63 A N3 U 34 1_555 hydrog WATSON-CRICK A G 42 A N1 G 20 1_555 A C 67 A N3 C 38 1_555 hydrog WATSON-CRICK A G 42 A N2 G 20 1_555 A C 67 A O2 C 38 1_555 hydrog WATSON-CRICK A G 42 A O6 G 20 1_555 A C 67 A N4 C 38 1_555 hydrog WATSON-CRICK A A 43 A N1 A 21 1_555 A U 66 A N3 U 37 1_555 hydrog WATSON-CRICK A A 43 A N6 A 21 1_555 A U 66 A O4 U 37 1_555 hydrog WATSON-CRICK A U 44 A N3 U 22 1_555 A A 65 A N1 A 36 1_555 hydrog WATSON-CRICK A U 44 A O4 U 22 1_555 A A 65 A N6 A 36 1_555 hydrog WATSON-CRICK A C 45 A N3 C 23 1_555 A G 64 A N1 G 35 1_555 hydrog WATSON-CRICK A C 45 A N4 C 23 1_555 A G 64 A O6 G 35 1_555 hydrog WATSON-CRICK A C 45 A O2 C 23 1_555 A G 64 A N2 G 35 1_555 hydrog WATSON-CRICK A G 46 A N1 G 24 1_555 A C 62 A N3 C 33 1_555 hydrog WATSON-CRICK A G 46 A N2 G 24 1_555 A C 62 A O2 C 33 1_555 hydrog WATSON-CRICK A G 46 A O6 G 24 1_555 A C 62 A N4 C 33 1_555 hydrog WATSON-CRICK A C 47 A N3 C 25 1_555 A G 61 A N1 G 32 1_555 hydrog WATSON-CRICK A C 47 A N4 C 25 1_555 A G 61 A O6 G 32 1_555 hydrog WATSON-CRICK A C 47 A O2 C 25 1_555 A G 61 A N2 G 32 1_555 hydrog WATSON-CRICK A C 48 A N3 C 26 1_555 A G 60 A N1 G 31 1_555 hydrog WATSON-CRICK A C 48 A N4 C 26 1_555 A G 60 A O6 G 31 1_555 hydrog WATSON-CRICK A C 48 A O2 C 26 1_555 A G 60 A N2 G 31 1_555 hydrog U-G MISPAIR A D A U 48 A O2 U 27 1_555 A G 48 A N1 G 30 1_555 hydrog U-C MISPAIR A U 63 A O2 U 34 1_555 A C 67 A N4 C 38 1_555 hydrog C-G PAIR A A A C 71 A N4 C 42 1_555 A G 74 A O6 G 45 1_555 hydrog C-G PAIR B B A C 71 A N4 C 42 1_555 A G 74 A O6 G 45 1_555 hydrog C-G PAIR A C 75 A N4 C 46 1_555 A G 78 A O6 G 49 1_555 hydrog WATSON-CRICK B G 24 B N1 G 2 1_555 B CCC 87 B N3 CCC 58 1_555 hydrog WATSON-CRICK B G 24 B N2 G 2 1_555 B CCC 87 B O2 CCC 58 1_555 hydrog WATSON-CRICK B G 24 B O6 G 2 1_555 B CCC 87 B N4 CCC 58 1_555 hydrog WATSON-CRICK B G 25 B N1 G 3 1_555 B C 86 B N3 C 57 1_555 hydrog WATSON-CRICK B G 25 B N2 G 3 1_555 B C 86 B O2 C 57 1_555 hydrog WATSON-CRICK B G 25 B O6 G 3 1_555 B C 86 B N4 C 57 1_555 hydrog WATSON-CRICK B G 26 B N1 G 4 1_555 B C 85 B N3 C 56 1_555 hydrog WATSON-CRICK B G 26 B N2 G 4 1_555 B C 85 B O2 C 56 1_555 hydrog WATSON-CRICK B G 26 B O6 G 4 1_555 B C 85 B N4 C 56 1_555 hydrog WATSON-CRICK B A 27 B N1 A 5 1_555 B U 84 B N3 U 55 1_555 hydrog WATSON-CRICK B A 27 B N6 A 5 1_555 B U 84 B O4 U 55 1_555 hydrog TYPE_28_PAIR B U 28 B N3 U 6 1_555 B G 83 B O6 G 54 1_555 hydrog TYPE_28_PAIR B U 28 B O2 U 6 1_555 B G 83 B N1 G 54 1_555 hydrog WATSON-CRICK B C 29 B N3 C 7 1_555 B G 82 B N1 G 53 1_555 hydrog WATSON-CRICK B C 29 B N4 C 7 1_555 B G 82 B O6 G 53 1_555 hydrog WATSON-CRICK B C 29 B O2 C 7 1_555 B G 82 B N2 G 53 1_555 hydrog TYPE_28_PAIR B U 30 B N3 U 8 1_555 B G 81 B O6 G 52 1_555 hydrog TYPE_28_PAIR B U 30 B O2 U 8 1_555 B G 81 B N1 G 52 1_555 hydrog G-A MISPAIR B G 31 B N7 G 9 1_555 B A 77 B N6 A 48 1_555 hydrog WATSON-CRICK B G 31 B N1 G 9 1_555 B C 80 B N3 C 51 1_555 hydrog WATSON-CRICK B G 31 B N2 G 9 1_555 B C 80 B O2 C 51 1_555 hydrog WATSON-CRICK B G 31 B O6 G 9 1_555 B C 80 B N4 C 51 1_555 hydrog U-A PAIR B U 32 B O4 U 10 1_555 B A 77 B N6 A 48 1_555 hydrog TYPE_28_PAIR B U 32 B N3 U 10 1_555 B G 79 B O6 G 50 1_555 hydrog TYPE_28_PAIR B U 32 B O2 U 10 1_555 B G 79 B N1 G 50 1_555 hydrog WATSON-CRICK B C 33 B N3 C 11 1_555 B G 78 B N1 G 49 1_555 hydrog WATSON-CRICK B C 33 B N4 C 11 1_555 B G 78 B O6 G 49 1_555 hydrog WATSON-CRICK B C 33 B O2 C 11 1_555 B G 78 B N2 G 49 1_555 hydrog A-G MISPAIR B A 34 B N6 A 12 1_555 B G 69 B N7 G 40 1_555 hydrog WATSON-CRICK B C 35 B N3 C 13 1_555 B G 74 B N1 G 45 1_555 hydrog WATSON-CRICK B C 35 B N4 C 13 1_555 B G 74 B O6 G 45 1_555 hydrog WATSON-CRICK B C 35 B O2 C 13 1_555 B G 74 B N2 G 45 1_555 hydrog WATSON-CRICK B C 36 B N3 C 14 1_555 B G 73 B N1 G 44 1_555 hydrog WATSON-CRICK B C 36 B N4 C 14 1_555 B G 73 B O6 G 44 1_555 hydrog WATSON-CRICK B C 36 B O2 C 14 1_555 B G 73 B N2 G 44 1_555 hydrog WATSON-CRICK B C 37 B N3 C 15 1_555 B G 70 B N1 G 41 1_555 hydrog WATSON-CRICK B C 37 B N4 C 15 1_555 B G 70 B O6 G 41 1_555 hydrog WATSON-CRICK B C 37 B O2 C 15 1_555 B G 70 B N2 G 41 1_555 hydrog WATSON-CRICK B C 38 B N3 C 16 1_555 B G 69 B N1 G 40 1_555 hydrog WATSON-CRICK B C 38 B N4 C 16 1_555 B G 69 B O6 G 40 1_555 hydrog WATSON-CRICK B C 38 B O2 C 16 1_555 B G 69 B N2 G 40 1_555 hydrog WATSON-CRICK B A 39 B N1 A 17 1_555 B U 68 B N3 U 39 1_555 hydrog WATSON-CRICK B A 39 B N6 A 17 1_555 B U 68 B O4 U 39 1_555 hydrog HOOGSTEEN A B U 40 B N3 U 18 1_555 B A 43 B N7 A 21 1_555 hydrog HOOGSTEEN B B U 40 B N3 U 18 1_555 B A 43 B N7 A 21 1_555 hydrog HOOGSTEEN A B U 40 B O4 U 18 1_555 B A 43 B N6 A 21 1_555 hydrog HOOGSTEEN B B U 40 B O4 U 18 1_555 B A 43 B N6 A 21 1_555 hydrog G-U MISPAIR A B G 42 B O6 G 20 1_555 B U 63 B N3 U 34 1_555 hydrog G-U MISPAIR B B G 42 B O6 G 20 1_555 B U 63 B N3 U 34 1_555 hydrog WATSON-CRICK A B G 42 B N1 G 20 1_555 B C 67 B N3 C 38 1_555 hydrog WATSON-CRICK B B G 42 B N1 G 20 1_555 B C 67 B N3 C 38 1_555 hydrog WATSON-CRICK A B G 42 B N2 G 20 1_555 B C 67 B O2 C 38 1_555 hydrog WATSON-CRICK B B G 42 B N2 G 20 1_555 B C 67 B O2 C 38 1_555 hydrog WATSON-CRICK A B G 42 B O6 G 20 1_555 B C 67 B N4 C 38 1_555 hydrog WATSON-CRICK B B G 42 B O6 G 20 1_555 B C 67 B N4 C 38 1_555 hydrog WATSON-CRICK B A 43 B N1 A 21 1_555 B U 66 B N3 U 37 1_555 hydrog WATSON-CRICK B A 43 B N6 A 21 1_555 B U 66 B O4 U 37 1_555 hydrog WATSON-CRICK B U 44 B N3 U 22 1_555 B A 65 B N1 A 36 1_555 hydrog WATSON-CRICK B U 44 B O4 U 22 1_555 B A 65 B N6 A 36 1_555 hydrog WATSON-CRICK B C 45 B N3 C 23 1_555 B G 64 B N1 G 35 1_555 hydrog WATSON-CRICK B C 45 B N4 C 23 1_555 B G 64 B O6 G 35 1_555 hydrog WATSON-CRICK B C 45 B O2 C 23 1_555 B G 64 B N2 G 35 1_555 hydrog WATSON-CRICK B G 46 B N1 G 24 1_555 B C 62 B N3 C 33 1_555 hydrog WATSON-CRICK B G 46 B N2 G 24 1_555 B C 62 B O2 C 33 1_555 hydrog WATSON-CRICK B G 46 B O6 G 24 1_555 B C 62 B N4 C 33 1_555 hydrog WATSON-CRICK B C 47 B N3 C 25 1_555 B G 61 B N1 G 32 1_555 hydrog WATSON-CRICK B C 47 B N4 C 25 1_555 B G 61 B O6 G 32 1_555 hydrog WATSON-CRICK B C 47 B O2 C 25 1_555 B G 61 B N2 G 32 1_555 hydrog WATSON-CRICK B C 48 B N3 C 26 1_555 B G 60 B N1 G 31 1_555 hydrog WATSON-CRICK B C 48 B N4 C 26 1_555 B G 60 B O6 G 31 1_555 hydrog WATSON-CRICK B C 48 B O2 C 26 1_555 B G 60 B N2 G 31 1_555 hydrog U-G MISPAIR A D B U 48 B O2 U 27 1_555 B G 48 B N1 G 30 1_555 hydrog U-C MISPAIR B U 63 B O2 U 34 1_555 B C 67 B N4 C 38 1_555 hydrog C-G PAIR B C 71 B N4 C 42 1_555 B G 74 B O6 G 45 1_555 hydrog C-G PAIR B C 75 B N4 C 46 1_555 B G 78 B O6 G 49 1_555 RNA non-coding RNA major groove base triple transcription, RNA 5LYU PDB 1 1 5LYU 23 87 5LYU 23 87 5LYU A 1 1 58 23 87 5LYU 23 87 5LYU B 1 1 58 binding site for residue NA A 101 A NA 101 Software 5 binding site for residue CL A 102 A CL 102 Software 2 binding site for residue MG B 101 B MG 101 Software 6 binding site for residue CL B 102 B CL 102 Software 2 binding site for Di-nucleotide C B 86 and CCC B 87 B C 86 Software 8 A A 34 A A 12 5 1_555 A HOH 230 G HOH 5 1_555 A HOH 233 G HOH 5 1_555 A HOH 288 G HOH 5 1_555 A HOH 297 G HOH 5 1_555 A C 62 A C 33 2 1_555 A G 64 A G 35 2 1_555 B HOH 229 H HOH 6 1_555 B HOH 269 H HOH 6 1_555 B HOH 314 H HOH 6 1_555 B HOH 318 H HOH 6 1_555 B HOH 319 H HOH 6 1_555 B HOH 320 H HOH 6 1_555 B C 62 B C 33 2 1_555 B U 63 B U 34 2 1_555 A G 23 A G 1 8 1_556 A U 48 A U 28 B 8 1_455 A C 48 A C 29 C 8 1_455 B G 24 B G 2 8 1_555 B G 25 B G 3 8 1_555 B G 26 B G 4 8 1_555 B C 85 B C 56 8 1_555 B HOH 234 H HOH 8 1_555 4 P 1 21 1