0.021839
0.000000
0.003478
0.000000
0.020929
0.000000
0.000000
0.000000
0.014746
0.00000
0.00000
0.00000
Martinez-Zapien, D.
Legrand, P.
McEwen, A.C.
Pasquali, S.
Dock-Bregeon, A.-C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
99.050
90.000
45.790
47.780
68.670
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 N3 O10 P2
385.161
n
CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE
RNA linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
H2 O
18.015
WATER
non-polymer
Mg 2
24.305
MAGNESIUM ION
non-polymer
Na 1
22.990
SODIUM ION
non-polymer
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
R
C
N
49
N
O
N
50
R
C
N
51
N
N
N
52
N
C
N
53
N
O
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
C
N
58
N
C
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
S
P
N
74
N
O
N
75
N
O
N
76
N
P
N
77
N
O
N
78
N
O
N
79
N
O
N
80
N
O
N
81
N
C
N
82
R
C
N
83
N
O
N
84
R
C
N
85
N
O
N
86
R
C
N
87
N
O
N
88
R
C
N
89
N
N
N
90
N
C
N
91
N
O
N
92
N
N
N
93
N
C
N
94
N
N
N
95
N
C
N
96
N
C
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
CL
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
R
C
Y
124
N
N
Y
125
N
C
Y
126
N
N
Y
127
N
C
N
128
N
C
N
129
N
O
N
130
N
N
N
131
N
C
N
132
N
N
N
133
N
N
Y
134
N
C
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
MG
N
153
N
NA
N
154
N
O
N
155
N
P
N
156
N
O
N
157
N
O
N
158
N
O
N
159
N
C
N
160
R
C
N
161
N
O
N
162
S
C
N
163
N
O
N
164
R
C
N
165
N
O
N
166
R
C
N
167
N
N
N
168
N
C
N
169
N
O
N
170
N
N
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
doub
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
doub
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
Y
139
N
sing
Y
140
N
sing
Y
141
N
doub
N
142
N
sing
Y
143
N
sing
N
144
N
sing
Y
145
N
doub
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
doub
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
doub
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
UK
Nucleic Acids Res.
NARHAD
0389
1362-4962
45
3568
3579
10.1093/nar/gkw1351
28082395
The crystal structure of the 5 functional domain of the transcription riboregulator 7SK.
2017
10.2210/pdb5lyu/pdb
pdb_00005lyu
100
1
CCD
2010-01-29
ADSC QUANTUM 315r
Si(111)
SINGLE WAVELENGTH
M
x-ray
1
0.9797
1.0
BM30A
ESRF
0.9797
SYNCHROTRON
ESRF BEAMLINE BM30A
18675.945
7SK RNA
2
syn
polymer
22.990
SODIUM ION
1
syn
non-polymer
35.453
CHLORIDE ION
2
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
18.015
water
229
nat
water
no
yes
GGGGAUCUGUCACCCCAUUGAUCGCCUUCGGGCUGAUCUGGCUGGCUAGGCGGGUCC(CCC)
GGGGAUCUGUCACCCCAUUGAUCGCCUUCGGGCUGAUCUGGCUGGCUAGGCGGGUCCC
A,B
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1
2.02
39.14
VAPOR DIFFUSION, HANGING DROP
30% PEG 1000, 50 mM Tris pH 7.5, 50 to 75 mM NaCl, 50 mM MgCl2
277
-4.234
1
19
A
24
A
87
0.262
A_G24:CCC87_A
1
-18.066
-0.724
-0.055
-0.226
-4.152
1
19
A
25
A
86
3.536
A_G25:C86_A
2
-17.883
-0.518
0.071
-0.110
-9.983
1
19
A
26
A
85
1.183
A_G26:C85_A
3
-15.685
-0.565
0.031
-0.143
-6.973
1
20
A
27
A
84
1.308
A_A27:U84_A
4
-12.120
0.327
0.262
-0.061
-4.277
1
28
A
28
A
83
0.002
A_U28:G83_A
5
-9.657
2.462
0.369
-0.552
3.451
1
19
A
29
A
82
0.903
A_C29:G82_A
6
-12.500
0.470
-0.026
-0.110
-3.274
1
28
A
30
A
81
1.103
A_U30:G81_A
7
-11.478
2.136
0.138
-0.511
-7.421
1
19
A
31
A
80
-4.425
A_G31:C80_A
8
-15.951
-0.418
0.206
-0.260
-4.203
1
28
A
32
A
79
-2.456
A_U32:G79_A
9
-16.422
2.379
0.434
-0.617
-0.298
1
19
A
33
A
78
-1.460
A_C33:G78_A
10
-6.896
0.135
0.331
-0.123
18.178
1
19
A
35
A
74
0.870
A_C35:G74_A
11
-1.481
0.596
-0.323
0.008
22.196
1
19
A
36
A
73
2.524
A_C36:G73_A
12
-9.166
0.452
-0.409
-0.139
11.108
1
19
A
37
A
70
1.049
A_C37:G70_A
13
-14.558
0.520
-0.396
-0.208
-0.305
1
19
A
38
A
69
-0.301
A_C38:G69_A
14
-10.302
0.502
0.259
-0.293
-3.516
1
20
A
39
A
68
-0.235
A_A39:U68_A
15
-21.343
0.040
0.039
-0.149
-9.435
1
19
A
42
A
67
2.593
A_G42:C67_A
16
-7.007
-0.275
-0.094
-0.043
-1.398
1
20
A
43
A
66
3.669
A_A43:U66_A
17
-10.547
-0.181
-0.003
-0.007
10.064
1
20
A
44
A
65
1.432
A_U44:A65_A
18
-13.279
0.109
-0.278
-0.110
2.514
1
19
A
45
A
64
1.271
A_C45:G64_A
19
-10.348
0.549
-0.006
-0.214
4.648
1
19
A
46
A
62
-0.947
A_G46:C62_A
20
-4.099
-0.715
-0.036
-0.293
12.365
1
19
A
47
A
61
1.253
A_C47:G61_A
21
-11.124
0.709
-0.332
-0.287
6.370
1
19
A
48
A
60
-0.652
A_C48:G60_A
22
-4.056
0.446
-0.236
-0.217
-6.729
6
A
A
48
D
A
48
-111.273
A_U48A:G48D_A
23
-7.063
0.755
-0.040
-5.328
-3.470
1
19
B
24
B
87
-7.153
B_G24:CCC87_B
24
-15.205
-0.908
0.167
-0.263
-3.019
1
19
B
25
B
86
0.170
B_G25:C86_B
25
-16.888
-0.453
-0.060
-0.137
-7.447
1
19
B
26
B
85
1.475
B_G26:C85_B
26
-12.493
-0.631
-0.020
-0.044
-5.646
1
20
B
27
B
84
2.150
B_A27:U84_B
27
-14.425
-0.135
0.224
-0.142
-4.183
1
28
B
28
B
83
1.769
B_U28:G83_B
28
-9.993
2.495
0.339
-0.505
3.601
1
19
B
29
B
82
2.657
B_C29:G82_B
29
-12.183
0.490
-0.030
-0.059
-3.066
1
28
B
30
B
81
2.078
B_U30:G81_B
30
-11.196
2.148
0.120
-0.483
-8.042
1
19
B
31
B
80
-3.985
B_G31:C80_B
31
-16.123
-0.416
0.191
-0.247
-4.884
1
28
B
32
B
79
-1.678
B_U32:G79_B
32
-16.193
2.409
0.476
-0.611
2.159
1
19
B
33
B
78
0.280
B_C33:G78_B
33
-9.225
0.315
0.232
-0.080
9.755
1
19
B
35
B
74
1.212
B_C35:G74_B
34
2.470
0.471
-0.198
-0.041
19.200
1
19
B
36
B
73
2.203
B_C36:G73_B
35
-6.625
0.371
-0.621
-0.102
13.114
1
19
B
37
B
70
0.565
B_C37:G70_B
36
-14.774
0.511
-0.375
-0.153
1.604
1
19
B
38
B
69
0.058
B_C38:G69_B
37
-12.996
0.455
0.267
-0.294
-3.426
1
20
B
39
B
68
-0.808
B_A39:U68_B
38
-20.799
0.100
0.131
-0.179
-9.189
1
19
B
42
B
67
1.826
B_G42:C67_B
39
-8.908
-0.202
0.006
-0.046
-1.582
1
20
B
43
B
66
3.516
B_A43:U66_B
40
-10.330
-0.177
-0.022
-0.017
10.138
1
20
B
44
B
65
1.672
B_U44:A65_B
41
-12.489
0.114
-0.284
-0.116
2.136
1
19
B
45
B
64
1.564
B_C45:G64_B
42
-10.689
0.559
-0.006
-0.210
4.702
1
19
B
46
B
62
-0.051
B_G46:C62_B
43
-4.016
-0.698
-0.029
-0.256
12.168
1
19
B
47
B
61
1.587
B_C47:G61_B
44
-11.650
0.711
-0.334
-0.286
6.292
1
19
B
48
B
60
-1.711
B_C48:G60_B
45
-5.984
0.717
-0.200
-0.341
-2.980
6
A
B
48
D
B
48
-107.072
B_U48A:G48D_B
46
-3.431
1.113
-0.358
-4.651
2.650
39.004
A
A
24
25
17.746
A
A
87
86
3.142
11.674
0.223
-1.181
AA_G24G25:C86CCC87_AA
1
-2.229
3.389
37.216
-3.049
-0.579
2.535
28.267
A
A
25
26
20.014
A
A
86
85
3.318
9.546
1.034
-2.151
AA_G25G26:C85C86_AA
2
4.527
-9.491
26.255
-6.464
-1.141
2.854
34.069
A
A
26
27
7.549
A
A
85
84
3.091
4.411
-0.069
-1.693
AA_G26A27:U84C85_AA
3
-0.740
1.266
33.783
-3.529
0.011
3.108
39.960
A
A
27
28
4.285
A
A
84
83
3.210
2.926
-0.137
-1.332
AA_A27U28:G83U84_AA
4
0.223
-0.326
39.857
-2.274
0.225
2.238
24.582
A
A
28
29
13.596
A
A
83
82
2.836
5.697
0.131
-2.147
AA_U28C29:G82G83_AA
5
4.976
-11.876
23.406
-6.437
0.910
3.409
37.161
A
A
29
30
3.631
A
A
82
81
3.510
2.312
0.152
-1.600
AA_C29U30:G81G82_AA
6
0.488
-0.766
37.088
-2.836
-0.169
2.065
26.055
A
A
30
31
25.626
A
A
81
80
3.112
11.188
-1.000
-1.712
AA_U30G31:C80G81_AA
7
0.735
-1.684
23.557
-6.349
2.385
3.006
43.921
A
A
31
32
8.743
A
A
80
79
3.192
6.517
0.348
-1.081
AA_G31U32:G79C80_AA
8
-0.204
0.273
43.458
-2.034
-0.484
2.480
28.160
A
A
32
33
10.758
A
A
79
78
2.856
5.198
0.177
-1.837
AA_U32C33:G78G79_AA
9
2.702
-5.592
27.556
-4.778
0.157
2.995
90.947
A
A
33
35
-3.370
A
A
78
74
2.870
-4.802
2.367
-0.486
AA_C33C35:G74G78_AA
10
5.446
-3.822
90.720
-0.256
-1.564
2.966
33.212
A
A
35
36
7.077
A
A
74
73
3.380
4.019
0.342
-2.504
AA_C35C36:G73G74_AA
11
-5.348
9.418
32.550
-5.040
-1.476
3.250
46.116
A
A
36
37
9.573
A
A
73
70
3.576
7.469
1.227
-1.748
AA_C36C37:G70G73_AA
12
-0.618
0.792
45.536
-2.903
-1.622
2.834
32.567
A
A
37
38
16.968
A
A
70
69
3.491
9.329
-0.480
-1.940
AA_C37C38:G69G70_AA
13
-6.326
11.506
30.604
-5.085
-0.246
2.733
34.422
A
A
38
39
15.321
A
A
69
68
3.228
8.936
-0.069
-1.369
AA_C38A39:U68G69_AA
14
5.119
-8.777
32.890
-3.613
0.861
2.880
47.256
A
A
39
42
11.166
A
A
68
67
3.118
8.898
-1.600
-1.538
AA_A39G42:C67U68_AA
15
-2.843
3.568
46.375
-2.590
1.781
2.452
27.371
A
A
42
43
13.691
A
A
67
66
2.984
6.414
-1.202
-2.324
AA_G42A43:U66C67_AA
16
-2.128
4.543
26.539
-6.252
2.095
2.740
31.239
A
A
43
44
12.737
A
A
66
65
2.962
6.801
0.053
-0.710
AA_A43U44:A65U66_AA
17
2.275
-4.261
30.425
-2.459
0.282
3.152
38.734
A
A
44
45
7.784
A
A
65
64
3.417
5.148
0.883
-1.604
AA_U44C45:G64A65_AA
18
-1.381
2.088
38.379
-3.054
-1.501
2.991
37.768
A
A
45
46
6.474
A
A
64
62
3.252
4.181
1.422
-1.554
AA_C45G46:C62G64_AA
19
-1.987
3.076
37.494
-2.918
-2.443
3.078
36.601
A
A
46
47
4.104
A
A
62
61
3.185
2.575
0.001
-1.476
AA_G46C47:G61C62_AA
20
0.317
-0.506
36.512
-2.690
0.040
3.085
31.702
A
A
47
48
10.014
A
A
61
60
3.460
5.444
-0.058
-1.954
AA_C47C48:G60G61_AA
21
-0.754
1.388
31.234
-4.587
-0.034
3.316
93.761
A
A
A
48
48
4.315
D
A
A
60
48
3.459
6.293
-1.564
-0.815
AA_C48U48A:G48DG60_AA
22
7.068
-4.846
93.394
-0.678
1.206
2.612
36.559
B
B
24
25
16.414
B
B
87
86
3.109
10.164
0.233
-1.450
BB_G24G25:C86CCC87_BB
23
2.165
-3.497
35.099
-3.563
-0.105
2.412
29.023
B
B
25
26
19.898
B
B
86
85
3.255
9.783
1.025
-2.080
BB_G25G26:C85C86_BB
24
0.836
-1.701
27.345
-6.074
-1.881
2.701
34.106
B
B
26
27
9.008
B
B
85
84
3.011
5.259
-0.394
-1.973
BB_G26A27:U84C85_BB
25
-2.405
4.119
33.627
-4.098
0.337
3.058
40.242
B
B
27
28
6.704
B
B
84
83
3.221
4.603
0.147
-1.318
BB_A27U28:G83U84_BB
26
0.212
-0.309
39.988
-2.417
-0.191
2.105
23.775
B
B
28
29
16.021
B
B
83
82
2.830
6.470
0.126
-2.174
BB_U28C29:G82G83_BB
27
4.966
-12.297
22.351
-6.934
0.966
3.373
36.470
B
B
29
30
4.381
B
B
82
81
3.498
2.739
0.138
-1.618
BB_C29U30:G81G82_BB
28
0.732
-1.171
36.363
-2.985
-0.114
2.086
25.648
B
B
30
31
25.626
B
B
81
80
3.140
11.016
-1.025
-1.720
BB_U30G31:C80G81_BB
29
0.736
-1.712
23.186
-6.492
2.483
3.002
43.895
B
B
31
32
8.701
B
B
80
79
3.189
6.483
0.356
-1.069
BB_G31U32:G79C80_BB
30
-0.610
0.818
43.433
-2.016
-0.532
2.518
28.428
B
B
32
33
8.738
B
B
79
78
2.801
4.258
0.252
-1.751
BB_U32C33:G78G79_BB
31
4.536
-9.309
27.752
-4.370
0.345
3.278
88.930
B
B
33
35
-1.698
B
B
78
74
3.187
-2.378
2.415
-0.767
BB_C33C35:G74G78_BB
32
3.632
-2.593
88.846
-0.499
-1.649
3.010
32.666
B
B
35
36
3.405
B
B
74
73
3.167
1.912
0.380
-1.982
BB_C35C36:G73G74_BB
33
-2.619
4.663
32.509
-3.837
-1.104
2.985
46.426
B
B
36
37
11.709
B
B
73
70
3.452
9.171
1.268
-1.750
BB_C36C37:G70G73_BB
34
-2.839
3.625
45.477
-2.991
-1.848
2.816
33.060
B
B
37
38
16.851
B
B
70
69
3.470
9.395
-0.465
-1.938
BB_C37C38:G69G70_BB
35
-6.859
12.304
30.999
-4.985
-0.336
2.695
34.031
B
B
38
39
16.813
B
B
69
68
3.221
9.694
-0.029
-1.373
BB_C38A39:U68G69_BB
36
3.476
-6.028
32.479
-3.779
0.564
2.993
47.445
B
B
39
42
8.292
B
B
68
67
3.121
6.649
-1.645
-1.445
BB_A39G42:C67U68_BB
37
-2.931
3.655
46.917
-2.301
1.821
2.282
27.710
B
B
42
43
16.090
B
B
67
66
2.945
7.605
-1.194
-2.308
BB_G42A43:U66C67_BB
38
-1.758
3.719
26.608
-6.319
2.147
2.719
31.061
B
B
43
44
13.697
B
B
66
65
2.961
7.264
0.070
-0.702
BB_A43U44:A65U66_BB
39
2.254
-4.250
30.138
-2.541
0.251
3.172
38.622
B
B
44
45
7.774
B
B
65
64
3.428
5.127
0.893
-1.591
BB_U44C45:G64A65_BB
40
-1.042
1.579
38.280
-3.046
-1.480
3.050
36.659
B
B
45
46
4.924
B
B
64
62
3.269
3.092
1.412
-1.566
BB_C45G46:C62G64_BB
41
-2.039
3.247
36.477
-2.901
-2.515
3.095
36.279
B
B
46
47
3.699
B
B
62
61
3.192
2.301
-0.039
-1.479
BB_G46C47:G61C62_BB
42
0.426
-0.684
36.206
-2.686
0.121
2.985
32.249
B
B
47
48
12.201
B
B
61
60
3.440
6.729
-0.308
-1.924
BB_C47C48:G60G61_BB
43
-1.025
1.858
31.542
-4.653
0.374
3.379
89.149
A
B
B
48
48
2.750
D
B
B
60
48
3.523
3.856
-1.358
-1.140
BB_C48U48A:G48DG60_BB
44
7.781
-5.548
88.814
-0.896
1.137
pdbx_audit_support
struct_conn
entity
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
struct_conn_type
repository
Initial release
Database references
Author supporting evidence
Derived calculations
Data collection
Structure summary
Data collection
Database references
Derived calculations
Refinement description
1
0
2017-01-25
1
1
2017-05-03
1
2
2017-08-30
1
3
2018-04-18
1
4
2024-01-17
_pdbx_audit_support.funding_organization
_entity.pdbx_description
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn_type.id
France
French National Research Agency
ANR-06-BLAN-0072
France
French National Research Agency
ANR-12-BSV5-0018
France
French National Research Agency
ANR-10-INSB-05-01
N
PDBE
Y
PDBE
2016-09-28
REL
REL
NA
SODIUM ION
CL
CHLORIDE ION
MG
MAGNESIUM ION
HOH
water
9606
HUMAN
Homo sapiens
sample
1
58
5LYS
PDB
experimental model
NA
2
2
NA
NA
101
A
CL
1
3
CL
CL
102
A
MG
1
4
MG
MG
101
B
CL
2
3
CL
CL
102
B
HOH
211
5
HOH
HOH
201
A
HOH
55
5
HOH
HOH
202
A
HOH
15
5
HOH
HOH
203
A
HOH
186
5
HOH
HOH
204
A
HOH
98
5
HOH
HOH
205
A
HOH
105
5
HOH
HOH
206
A
HOH
121
5
HOH
HOH
207
A
HOH
2
5
HOH
HOH
208
A
HOH
16
5
HOH
HOH
209
A
HOH
38
5
HOH
HOH
210
A
HOH
225
5
HOH
HOH
211
A
HOH
94
5
HOH
HOH
212
A
HOH
116
5
HOH
HOH
213
A
HOH
118
5
HOH
HOH
214
A
HOH
75
5
HOH
HOH
215
A
HOH
133
5
HOH
HOH
216
A
HOH
40
5
HOH
HOH
217
A
HOH
141
5
HOH
HOH
218
A
HOH
87
5
HOH
HOH
219
A
HOH
4
5
HOH
HOH
220
A
HOH
93
5
HOH
HOH
221
A
HOH
150
5
HOH
HOH
222
A
HOH
166
5
HOH
HOH
223
A
HOH
72
5
HOH
HOH
224
A
HOH
178
5
HOH
HOH
225
A
HOH
29
5
HOH
HOH
226
A
HOH
193
5
HOH
HOH
227
A
HOH
129
5
HOH
HOH
228
A
HOH
37
5
HOH
HOH
229
A
HOH
114
5
HOH
HOH
230
A
HOH
25
5
HOH
HOH
231
A
HOH
12
5
HOH
HOH
232
A
HOH
113
5
HOH
HOH
233
A
HOH
62
5
HOH
HOH
234
A
HOH
227
5
HOH
HOH
235
A
HOH
177
5
HOH
HOH
236
A
HOH
88
5
HOH
HOH
237
A
HOH
19
5
HOH
HOH
238
A
HOH
213
5
HOH
HOH
239
A
HOH
184
5
HOH
HOH
240
A
HOH
179
5
HOH
HOH
241
A
HOH
45
5
HOH
HOH
242
A
HOH
192
5
HOH
HOH
243
A
HOH
28
5
HOH
HOH
244
A
HOH
18
5
HOH
HOH
245
A
HOH
176
5
HOH
HOH
246
A
HOH
220
5
HOH
HOH
247
A
HOH
122
5
HOH
HOH
248
A
HOH
132
5
HOH
HOH
249
A
HOH
84
5
HOH
HOH
250
A
HOH
1
5
HOH
HOH
251
A
HOH
30
5
HOH
HOH
252
A
HOH
142
5
HOH
HOH
253
A
HOH
74
5
HOH
HOH
254
A
HOH
224
5
HOH
HOH
255
A
HOH
110
5
HOH
HOH
256
A
HOH
66
5
HOH
HOH
257
A
HOH
151
5
HOH
HOH
258
A
HOH
64
5
HOH
HOH
259
A
HOH
222
5
HOH
HOH
260
A
HOH
77
5
HOH
HOH
261
A
HOH
33
5
HOH
HOH
262
A
HOH
205
5
HOH
HOH
263
A
HOH
97
5
HOH
HOH
264
A
HOH
17
5
HOH
HOH
265
A
HOH
60
5
HOH
HOH
266
A
HOH
124
5
HOH
HOH
267
A
HOH
49
5
HOH
HOH
268
A
HOH
57
5
HOH
HOH
269
A
HOH
91
5
HOH
HOH
270
A
HOH
83
5
HOH
HOH
271
A
HOH
169
5
HOH
HOH
272
A
HOH
147
5
HOH
HOH
273
A
HOH
51
5
HOH
HOH
274
A
HOH
175
5
HOH
HOH
275
A
HOH
92
5
HOH
HOH
276
A
HOH
90
5
HOH
HOH
277
A
HOH
81
5
HOH
HOH
278
A
HOH
157
5
HOH
HOH
279
A
HOH
96
5
HOH
HOH
280
A
HOH
161
5
HOH
HOH
281
A
HOH
204
5
HOH
HOH
282
A
HOH
59
5
HOH
HOH
283
A
HOH
216
5
HOH
HOH
284
A
HOH
89
5
HOH
HOH
285
A
HOH
219
5
HOH
HOH
286
A
HOH
203
5
HOH
HOH
287
A
HOH
44
5
HOH
HOH
288
A
HOH
228
5
HOH
HOH
289
A
HOH
191
5
HOH
HOH
290
A
HOH
152
5
HOH
HOH
291
A
HOH
165
5
HOH
HOH
292
A
HOH
173
5
HOH
HOH
293
A
HOH
117
5
HOH
HOH
294
A
HOH
209
5
HOH
HOH
295
A
HOH
65
5
HOH
HOH
296
A
HOH
153
5
HOH
HOH
297
A
HOH
206
5
HOH
HOH
298
A
HOH
218
5
HOH
HOH
299
A
HOH
170
5
HOH
HOH
300
A
HOH
168
5
HOH
HOH
301
A
HOH
172
5
HOH
HOH
302
A
HOH
221
5
HOH
HOH
303
A
HOH
171
5
HOH
HOH
304
A
HOH
217
5
HOH
HOH
305
A
HOH
188
5
HOH
HOH
201
B
HOH
39
5
HOH
HOH
202
B
HOH
187
5
HOH
HOH
203
B
HOH
9
5
HOH
HOH
204
B
HOH
14
5
HOH
HOH
205
B
HOH
11
5
HOH
HOH
206
B
HOH
134
5
HOH
HOH
207
B
HOH
143
5
HOH
HOH
208
B
HOH
56
5
HOH
HOH
209
B
HOH
70
5
HOH
HOH
210
B
HOH
112
5
HOH
HOH
211
B
HOH
182
5
HOH
HOH
212
B
HOH
111
5
HOH
HOH
213
B
HOH
58
5
HOH
HOH
214
B
HOH
24
5
HOH
HOH
215
B
HOH
6
5
HOH
HOH
216
B
HOH
53
5
HOH
HOH
217
B
HOH
35
5
HOH
HOH
218
B
HOH
13
5
HOH
HOH
219
B
HOH
22
5
HOH
HOH
220
B
HOH
68
5
HOH
HOH
221
B
HOH
180
5
HOH
HOH
222
B
HOH
167
5
HOH
HOH
223
B
HOH
130
5
HOH
HOH
224
B
HOH
10
5
HOH
HOH
225
B
HOH
181
5
HOH
HOH
226
B
HOH
21
5
HOH
HOH
227
B
HOH
80
5
HOH
HOH
228
B
HOH
199
5
HOH
HOH
229
B
HOH
95
5
HOH
HOH
230
B
HOH
23
5
HOH
HOH
231
B
HOH
31
5
HOH
HOH
232
B
HOH
226
5
HOH
HOH
233
B
HOH
223
5
HOH
HOH
234
B
HOH
156
5
HOH
HOH
235
B
HOH
137
5
HOH
HOH
236
B
HOH
26
5
HOH
HOH
237
B
HOH
149
5
HOH
HOH
238
B
HOH
189
5
HOH
HOH
239
B
HOH
128
5
HOH
HOH
240
B
HOH
214
5
HOH
HOH
241
B
HOH
106
5
HOH
HOH
242
B
HOH
135
5
HOH
HOH
243
B
HOH
36
5
HOH
HOH
244
B
HOH
34
5
HOH
HOH
245
B
HOH
5
5
HOH
HOH
246
B
HOH
73
5
HOH
HOH
247
B
HOH
8
5
HOH
HOH
248
B
HOH
107
5
HOH
HOH
249
B
HOH
101
5
HOH
HOH
250
B
HOH
99
5
HOH
HOH
251
B
HOH
139
5
HOH
HOH
252
B
HOH
3
5
HOH
HOH
253
B
HOH
69
5
HOH
HOH
254
B
HOH
196
5
HOH
HOH
255
B
HOH
126
5
HOH
HOH
256
B
HOH
78
5
HOH
HOH
257
B
HOH
125
5
HOH
HOH
258
B
HOH
155
5
HOH
HOH
259
B
HOH
127
5
HOH
HOH
260
B
HOH
82
5
HOH
HOH
261
B
HOH
207
5
HOH
HOH
262
B
HOH
27
5
HOH
HOH
263
B
HOH
120
5
HOH
HOH
264
B
HOH
109
5
HOH
HOH
265
B
HOH
20
5
HOH
HOH
266
B
HOH
76
5
HOH
HOH
267
B
HOH
108
5
HOH
HOH
268
B
HOH
200
5
HOH
HOH
269
B
HOH
43
5
HOH
HOH
270
B
HOH
190
5
HOH
HOH
271
B
HOH
102
5
HOH
HOH
272
B
HOH
145
5
HOH
HOH
273
B
HOH
185
5
HOH
HOH
274
B
HOH
115
5
HOH
HOH
275
B
HOH
7
5
HOH
HOH
276
B
HOH
52
5
HOH
HOH
277
B
HOH
85
5
HOH
HOH
278
B
HOH
41
5
HOH
HOH
279
B
HOH
174
5
HOH
HOH
280
B
HOH
61
5
HOH
HOH
281
B
HOH
42
5
HOH
HOH
282
B
HOH
148
5
HOH
HOH
283
B
HOH
100
5
HOH
HOH
284
B
HOH
212
5
HOH
HOH
285
B
HOH
103
5
HOH
HOH
286
B
HOH
50
5
HOH
HOH
287
B
HOH
123
5
HOH
HOH
288
B
HOH
32
5
HOH
HOH
289
B
HOH
144
5
HOH
HOH
290
B
HOH
67
5
HOH
HOH
291
B
HOH
146
5
HOH
HOH
292
B
HOH
79
5
HOH
HOH
293
B
HOH
46
5
HOH
HOH
294
B
HOH
71
5
HOH
HOH
295
B
HOH
131
5
HOH
HOH
296
B
HOH
154
5
HOH
HOH
297
B
HOH
162
5
HOH
HOH
298
B
HOH
63
5
HOH
HOH
299
B
HOH
54
5
HOH
HOH
300
B
HOH
86
5
HOH
HOH
301
B
HOH
164
5
HOH
HOH
302
B
HOH
104
5
HOH
HOH
303
B
HOH
208
5
HOH
HOH
304
B
HOH
119
5
HOH
HOH
305
B
HOH
47
5
HOH
HOH
306
B
HOH
194
5
HOH
HOH
307
B
HOH
160
5
HOH
HOH
308
B
HOH
195
5
HOH
HOH
309
B
HOH
140
5
HOH
HOH
310
B
HOH
48
5
HOH
HOH
311
B
HOH
159
5
HOH
HOH
312
B
HOH
136
5
HOH
HOH
313
B
HOH
202
5
HOH
HOH
314
B
HOH
215
5
HOH
HOH
315
B
HOH
163
5
HOH
HOH
316
B
HOH
183
5
HOH
HOH
317
B
HOH
198
5
HOH
HOH
318
B
HOH
197
5
HOH
HOH
319
B
HOH
201
5
HOH
HOH
320
B
HOH
138
5
HOH
HOH
321
B
HOH
158
5
HOH
HOH
322
B
HOH
229
5
HOH
HOH
323
B
HOH
210
5
HOH
HOH
324
B
G
23
n
1
G
23
A
G
24
n
2
G
24
A
G
25
n
3
G
25
A
G
26
n
4
G
26
A
A
27
n
5
A
27
A
U
28
n
6
U
28
A
C
29
n
7
C
29
A
U
30
n
8
U
30
A
G
31
n
9
G
31
A
U
32
n
10
U
32
A
C
33
n
11
C
33
A
A
34
n
12
A
34
A
C
35
n
13
C
35
A
C
36
n
14
C
36
A
C
37
n
15
C
37
A
C
38
n
16
C
38
A
A
39
n
17
A
39
A
U
40
n
18
U
40
A
U
41
n
19
U
41
A
G
42
n
20
G
42
A
A
43
n
21
A
43
A
U
44
n
22
U
44
A
C
45
n
23
C
45
A
G
46
n
24
G
46
A
C
47
n
25
C
47
A
C
48
n
26
C
48
A
U
48
n
27
A
U
48
A
U
48
n
28
B
U
48
A
C
48
n
29
C
C
48
A
G
48
n
30
D
G
48
A
G
60
n
31
G
60
A
G
61
n
32
G
61
A
C
62
n
33
C
62
A
U
63
n
34
U
63
A
G
64
n
35
G
64
A
A
65
n
36
A
65
A
U
66
n
37
U
66
A
C
67
n
38
C
67
A
U
68
n
39
U
68
A
G
69
n
40
G
69
A
G
70
n
41
G
70
A
C
71
n
42
C
71
A
U
72
n
43
U
72
A
G
73
n
44
G
73
A
G
74
n
45
G
74
A
C
75
n
46
C
75
A
U
76
n
47
U
76
A
A
77
n
48
A
77
A
G
78
n
49
G
78
A
G
79
n
50
G
79
A
C
80
n
51
C
80
A
G
81
n
52
G
81
A
G
82
n
53
G
82
A
G
83
n
54
G
83
A
U
84
n
55
U
84
A
C
85
n
56
C
85
A
C
86
n
57
C
86
A
CCC
87
n
58
CCC
87
A
G
23
n
1
G
23
B
G
24
n
2
G
24
B
G
25
n
3
G
25
B
G
26
n
4
G
26
B
A
27
n
5
A
27
B
U
28
n
6
U
28
B
C
29
n
7
C
29
B
U
30
n
8
U
30
B
G
31
n
9
G
31
B
U
32
n
10
U
32
B
C
33
n
11
C
33
B
A
34
n
12
A
34
B
C
35
n
13
C
35
B
C
36
n
14
C
36
B
C
37
n
15
C
37
B
C
38
n
16
C
38
B
A
39
n
17
A
39
B
U
40
n
18
U
40
B
U
41
n
19
U
41
B
G
42
n
20
G
42
B
A
43
n
21
A
43
B
U
44
n
22
U
44
B
C
45
n
23
C
45
B
G
46
n
24
G
46
B
C
47
n
25
C
47
B
C
48
n
26
C
48
B
U
48
n
27
A
U
48
B
U
48
n
28
B
U
48
B
C
48
n
29
C
C
48
B
G
48
n
30
D
G
48
B
G
60
n
31
G
60
B
G
61
n
32
G
61
B
C
62
n
33
C
62
B
U
63
n
34
U
63
B
G
64
n
35
G
64
B
A
65
n
36
A
65
B
U
66
n
37
U
66
B
C
67
n
38
C
67
B
U
68
n
39
U
68
B
G
69
n
40
G
69
B
G
70
n
41
G
70
B
C
71
n
42
C
71
B
U
72
n
43
U
72
B
G
73
n
44
G
73
B
G
74
n
45
G
74
B
C
75
n
46
C
75
B
U
76
n
47
U
76
B
A
77
n
48
A
77
B
G
78
n
49
G
78
B
G
79
n
50
G
79
B
C
80
n
51
C
80
B
G
81
n
52
G
81
B
G
82
n
53
G
82
B
G
83
n
54
G
83
B
U
84
n
55
U
84
B
C
85
n
56
C
85
B
C
86
n
57
C
86
B
CCC
87
n
58
CCC
87
B
2.3935
0.2929
0.4778
0.7439
0.3258
3.9188
0.0638
0.3318
0.0130
-0.0578
0.1261
-0.0692
-0.1170
0.3811
-0.1900
-0.1501
-0.0161
0.0115
-0.1734
0.0457
-0.0870
refined
10.2009
-0.0652
30.7894
X-RAY DIFFRACTION
2.3973
-0.0134
-0.6351
0.6000
0.5369
1.7011
0.0714
-0.0270
-0.1668
0.0482
0.0057
0.0296
-0.0004
-0.2024
-0.0771
-0.1033
0.0090
-0.0180
-0.1614
-0.0252
-0.1253
refined
-13.6249
0.3211
33.7720
X-RAY DIFFRACTION
A
23
A
87
X-RAY DIFFRACTION
1
{ A|23 - A|87 }
B
23
B
87
X-RAY DIFFRACTION
2
{ B|23 - B|87 }
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
A
A
34
B
A
OP1
A
12
1_555
A
NA
101
C
NA
NA
1_555
A
A
34
A
A
OP2
A
12
1_555
20.3
A
A
34
B
A
OP1
A
12
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
230
G
O
HOH
1_555
115.2
A
A
34
A
A
OP2
A
12
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
230
G
O
HOH
1_555
111.7
A
A
34
B
A
OP1
A
12
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
233
G
O
HOH
1_555
174.8
A
A
34
A
A
OP2
A
12
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
233
G
O
HOH
1_555
157.0
A
HOH
230
G
O
HOH
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
233
G
O
HOH
1_555
59.9
A
A
34
B
A
OP1
A
12
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
288
G
O
HOH
1_555
92.2
A
A
34
A
A
OP2
A
12
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
288
G
O
HOH
1_555
102.0
A
HOH
230
G
O
HOH
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
288
G
O
HOH
1_555
143.6
A
HOH
233
G
O
HOH
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
288
G
O
HOH
1_555
93.0
A
A
34
B
A
OP1
A
12
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
297
G
O
HOH
1_555
113.2
A
A
34
A
A
OP2
A
12
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
297
G
O
HOH
1_555
93.7
A
HOH
230
G
O
HOH
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
297
G
O
HOH
1_555
90.2
A
HOH
233
G
O
HOH
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
297
G
O
HOH
1_555
66.2
A
HOH
288
G
O
HOH
1_555
A
NA
101
C
NA
NA
1_555
A
HOH
297
G
O
HOH
1_555
101.0
B
HOH
229
H
O
HOH
1_555
B
MG
101
E
MG
MG
1_555
B
HOH
269
H
O
HOH
1_555
93.3
B
HOH
229
H
O
HOH
1_555
B
MG
101
E
MG
MG
1_555
B
HOH
314
H
O
HOH
1_555
91.8
B
HOH
269
H
O
HOH
1_555
B
MG
101
E
MG
MG
1_555
B
HOH
314
H
O
HOH
1_555
91.8
B
HOH
229
H
O
HOH
1_555
B
MG
101
E
MG
MG
1_555
B
HOH
318
H
O
HOH
1_555
88.7
B
HOH
269
H
O
HOH
1_555
B
MG
101
E
MG
MG
1_555
B
HOH
318
H
O
HOH
1_555
173.4
B
HOH
314
H
O
HOH
1_555
B
MG
101
E
MG
MG
1_555
B
HOH
318
H
O
HOH
1_555
81.8
B
HOH
229
H
O
HOH
1_555
B
MG
101
E
MG
MG
1_555
B
HOH
319
H
O
HOH
1_555
90.2
B
HOH
269
H
O
HOH
1_555
B
MG
101
E
MG
MG
1_555
B
HOH
319
H
O
HOH
1_555
105.6
B
HOH
314
H
O
HOH
1_555
B
MG
101
E
MG
MG
1_555
B
HOH
319
H
O
HOH
1_555
162.3
B
HOH
318
H
O
HOH
1_555
B
MG
101
E
MG
MG
1_555
B
HOH
319
H
O
HOH
1_555
80.7
B
HOH
229
H
O
HOH
1_555
B
MG
101
E
MG
MG
1_555
B
HOH
320
H
O
HOH
1_555
175.8
B
HOH
269
H
O
HOH
1_555
B
MG
101
E
MG
MG
1_555
B
HOH
320
H
O
HOH
1_555
89.5
B
HOH
314
H
O
HOH
1_555
B
MG
101
E
MG
MG
1_555
B
HOH
320
H
O
HOH
1_555
85.0
B
HOH
318
H
O
HOH
1_555
B
MG
101
E
MG
MG
1_555
B
HOH
320
H
O
HOH
1_555
88.2
B
HOH
319
H
O
HOH
1_555
B
MG
101
E
MG
MG
1_555
B
HOH
320
H
O
HOH
1_555
92.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
-9.70
1.50
119.60
109.90
A
A
A
OP1
P
OP2
G
G
G
23
23
23
N
1
14.08
1.10
110.50
124.58
A
A
A
O3'
P
OP2
C
CCC
CCC
86
87
87
Y
1
-9.72
1.50
119.60
109.88
B
B
B
OP1
P
OP2
G
G
G
23
23
23
N
1
9.26
1.10
110.50
119.76
B
B
B
O3'
P
OP2
C
CCC
CCC
86
87
87
Y
1
A
A
P
OP3
G
G
23
23
-0.120
0.012
1.607
1.487
N
1
B
B
P
OP3
G
G
23
23
-0.122
0.012
1.607
1.485
N
113.740
58.6500
24.630
2.6653
0.0000
5.0623
-0.5550
0.0000
-2.1103
0.9587
0.9347
0.2396
0.1913
0.1935
2.2000
28.3200
553
13139
4.2100
87.1700
0.6060
RANDOM
1
THROUGHOUT
0.000
FOURIER SYNTHESIS
0.2750
0.2540
5LYS
0.316
2.2000
28.3200
230
2706
63.04
55.62
4
2472
0
116
634
SINUSOIDAL
2.000
126
HARMONIC
5.000
2994
HARMONIC
20.000
2
SEMIHARMONIC
5.000
504
SEMIHARMONIC
5.000
3246
SEMIHARMONIC
4.000
0.010
2994
HARMONIC
2.000
0.810
4668
HARMONIC
2.000
23.650
0.3018
0.2356
0.2383
2.3800
72
1586
1658
7
4.3400
54.1500
59.76
2.2
30
5LYU
13144
0.999
0.039
1
18.57
3.4
87.3
0.939
2.20
2.33
0.97
0.425
1
2.38
52.0
data scaling
XSCALE
refinement
BUSTER-TNT
2.10.2
data extraction
PDB_EXTRACT
3.20
data reduction
XDS
phasing
PHASER
N
The native crystal structure of 7SK 5'-hairpin
1
N
N
1
N
N
2
N
N
3
N
N
4
N
N
3
N
N
5
N
N
5
N
N
covale
1.602
both
A
C
86
A
O3'
C
57
1_555
A
CCC
87
A
P
CCC
58
1_555
covale
1.676
both
B
C
86
B
O3'
C
57
1_555
B
CCC
87
B
P
CCC
58
1_555
metalc
2.348
B
A
A
34
A
OP1
A
12
1_555
A
NA
101
C
NA
NA
1_555
metalc
2.820
A
A
A
34
A
OP2
A
12
1_555
A
NA
101
C
NA
NA
1_555
metalc
2.820
A
NA
101
C
NA
NA
1_555
A
HOH
230
G
O
HOH
1_555
metalc
2.852
A
NA
101
C
NA
NA
1_555
A
HOH
233
G
O
HOH
1_555
metalc
2.546
A
NA
101
C
NA
NA
1_555
A
HOH
288
G
O
HOH
1_555
metalc
2.551
A
NA
101
C
NA
NA
1_555
A
HOH
297
G
O
HOH
1_555
metalc
2.535
B
MG
101
E
MG
MG
1_555
B
HOH
229
H
O
HOH
1_555
metalc
1.940
B
MG
101
E
MG
MG
1_555
B
HOH
269
H
O
HOH
1_555
metalc
1.984
B
MG
101
E
MG
MG
1_555
B
HOH
314
H
O
HOH
1_555
metalc
2.242
B
MG
101
E
MG
MG
1_555
B
HOH
318
H
O
HOH
1_555
metalc
1.937
B
MG
101
E
MG
MG
1_555
B
HOH
319
H
O
HOH
1_555
metalc
2.022
B
MG
101
E
MG
MG
1_555
B
HOH
320
H
O
HOH
1_555
hydrog
WATSON-CRICK
A
G
24
A
N1
G
2
1_555
A
CCC
87
A
N3
CCC
58
1_555
hydrog
WATSON-CRICK
A
G
24
A
N2
G
2
1_555
A
CCC
87
A
O2
CCC
58
1_555
hydrog
WATSON-CRICK
A
G
24
A
O6
G
2
1_555
A
CCC
87
A
N4
CCC
58
1_555
hydrog
WATSON-CRICK
A
G
25
A
N1
G
3
1_555
A
C
86
A
N3
C
57
1_555
hydrog
WATSON-CRICK
A
G
25
A
N2
G
3
1_555
A
C
86
A
O2
C
57
1_555
hydrog
WATSON-CRICK
A
G
25
A
O6
G
3
1_555
A
C
86
A
N4
C
57
1_555
hydrog
WATSON-CRICK
A
G
26
A
N1
G
4
1_555
A
C
85
A
N3
C
56
1_555
hydrog
WATSON-CRICK
A
G
26
A
N2
G
4
1_555
A
C
85
A
O2
C
56
1_555
hydrog
WATSON-CRICK
A
G
26
A
O6
G
4
1_555
A
C
85
A
N4
C
56
1_555
hydrog
WATSON-CRICK
A
A
27
A
N1
A
5
1_555
A
U
84
A
N3
U
55
1_555
hydrog
WATSON-CRICK
A
A
27
A
N6
A
5
1_555
A
U
84
A
O4
U
55
1_555
hydrog
TYPE_28_PAIR
A
U
28
A
N3
U
6
1_555
A
G
83
A
O6
G
54
1_555
hydrog
TYPE_28_PAIR
A
U
28
A
O2
U
6
1_555
A
G
83
A
N1
G
54
1_555
hydrog
WATSON-CRICK
A
C
29
A
N3
C
7
1_555
A
G
82
A
N1
G
53
1_555
hydrog
WATSON-CRICK
A
C
29
A
N4
C
7
1_555
A
G
82
A
O6
G
53
1_555
hydrog
WATSON-CRICK
A
C
29
A
O2
C
7
1_555
A
G
82
A
N2
G
53
1_555
hydrog
TYPE_28_PAIR
A
U
30
A
N3
U
8
1_555
A
G
81
A
O6
G
52
1_555
hydrog
TYPE_28_PAIR
A
U
30
A
O2
U
8
1_555
A
G
81
A
N1
G
52
1_555
hydrog
G-A MISPAIR
A
G
31
A
N7
G
9
1_555
A
A
77
A
N6
A
48
1_555
hydrog
WATSON-CRICK
A
G
31
A
N1
G
9
1_555
A
C
80
A
N3
C
51
1_555
hydrog
WATSON-CRICK
A
G
31
A
N2
G
9
1_555
A
C
80
A
O2
C
51
1_555
hydrog
WATSON-CRICK
A
G
31
A
O6
G
9
1_555
A
C
80
A
N4
C
51
1_555
hydrog
U-A PAIR
A
U
32
A
O4
U
10
1_555
A
A
77
A
N6
A
48
1_555
hydrog
TYPE_28_PAIR
A
U
32
A
N3
U
10
1_555
A
G
79
A
O6
G
50
1_555
hydrog
TYPE_28_PAIR
A
U
32
A
O2
U
10
1_555
A
G
79
A
N1
G
50
1_555
hydrog
WATSON-CRICK
A
A
C
33
A
N3
C
11
1_555
A
G
78
A
N1
G
49
1_555
hydrog
WATSON-CRICK
B
A
C
33
A
N3
C
11
1_555
A
G
78
A
N1
G
49
1_555
hydrog
WATSON-CRICK
A
A
C
33
A
N4
C
11
1_555
A
G
78
A
O6
G
49
1_555
hydrog
WATSON-CRICK
B
A
C
33
A
N4
C
11
1_555
A
G
78
A
O6
G
49
1_555
hydrog
WATSON-CRICK
A
A
C
33
A
O2
C
11
1_555
A
G
78
A
N2
G
49
1_555
hydrog
WATSON-CRICK
B
A
C
33
A
O2
C
11
1_555
A
G
78
A
N2
G
49
1_555
hydrog
A-G MISPAIR
A
A
A
34
A
N6
A
12
1_555
A
G
69
A
N7
G
40
1_555
hydrog
A-G MISPAIR
B
A
A
34
A
N6
A
12
1_555
A
G
69
A
N7
G
40
1_555
hydrog
WATSON-CRICK
A
A
A
C
35
A
N3
C
13
1_555
A
G
74
A
N1
G
45
1_555
hydrog
WATSON-CRICK
B
B
A
C
35
A
N3
C
13
1_555
A
G
74
A
N1
G
45
1_555
hydrog
WATSON-CRICK
A
A
A
C
35
A
N4
C
13
1_555
A
G
74
A
O6
G
45
1_555
hydrog
WATSON-CRICK
B
B
A
C
35
A
N4
C
13
1_555
A
G
74
A
O6
G
45
1_555
hydrog
WATSON-CRICK
A
A
A
C
35
A
O2
C
13
1_555
A
G
74
A
N2
G
45
1_555
hydrog
WATSON-CRICK
B
B
A
C
35
A
O2
C
13
1_555
A
G
74
A
N2
G
45
1_555
hydrog
WATSON-CRICK
A
A
C
36
A
N3
C
14
1_555
A
G
73
A
N1
G
44
1_555
hydrog
WATSON-CRICK
B
A
C
36
A
N3
C
14
1_555
A
G
73
A
N1
G
44
1_555
hydrog
WATSON-CRICK
A
A
C
36
A
N4
C
14
1_555
A
G
73
A
O6
G
44
1_555
hydrog
WATSON-CRICK
B
A
C
36
A
N4
C
14
1_555
A
G
73
A
O6
G
44
1_555
hydrog
WATSON-CRICK
A
A
C
36
A
O2
C
14
1_555
A
G
73
A
N2
G
44
1_555
hydrog
WATSON-CRICK
B
A
C
36
A
O2
C
14
1_555
A
G
73
A
N2
G
44
1_555
hydrog
WATSON-CRICK
A
C
37
A
N3
C
15
1_555
A
G
70
A
N1
G
41
1_555
hydrog
WATSON-CRICK
A
C
37
A
N4
C
15
1_555
A
G
70
A
O6
G
41
1_555
hydrog
WATSON-CRICK
A
C
37
A
O2
C
15
1_555
A
G
70
A
N2
G
41
1_555
hydrog
WATSON-CRICK
A
C
38
A
N3
C
16
1_555
A
G
69
A
N1
G
40
1_555
hydrog
WATSON-CRICK
A
C
38
A
N4
C
16
1_555
A
G
69
A
O6
G
40
1_555
hydrog
WATSON-CRICK
A
C
38
A
O2
C
16
1_555
A
G
69
A
N2
G
40
1_555
hydrog
WATSON-CRICK
A
A
39
A
N1
A
17
1_555
A
U
68
A
N3
U
39
1_555
hydrog
WATSON-CRICK
A
A
39
A
N6
A
17
1_555
A
U
68
A
O4
U
39
1_555
hydrog
HOOGSTEEN
A
U
40
A
N3
U
18
1_555
A
A
43
A
N7
A
21
1_555
hydrog
HOOGSTEEN
A
U
40
A
O4
U
18
1_555
A
A
43
A
N6
A
21
1_555
hydrog
G-U MISPAIR
A
G
42
A
O6
G
20
1_555
A
U
63
A
N3
U
34
1_555
hydrog
WATSON-CRICK
A
G
42
A
N1
G
20
1_555
A
C
67
A
N3
C
38
1_555
hydrog
WATSON-CRICK
A
G
42
A
N2
G
20
1_555
A
C
67
A
O2
C
38
1_555
hydrog
WATSON-CRICK
A
G
42
A
O6
G
20
1_555
A
C
67
A
N4
C
38
1_555
hydrog
WATSON-CRICK
A
A
43
A
N1
A
21
1_555
A
U
66
A
N3
U
37
1_555
hydrog
WATSON-CRICK
A
A
43
A
N6
A
21
1_555
A
U
66
A
O4
U
37
1_555
hydrog
WATSON-CRICK
A
U
44
A
N3
U
22
1_555
A
A
65
A
N1
A
36
1_555
hydrog
WATSON-CRICK
A
U
44
A
O4
U
22
1_555
A
A
65
A
N6
A
36
1_555
hydrog
WATSON-CRICK
A
C
45
A
N3
C
23
1_555
A
G
64
A
N1
G
35
1_555
hydrog
WATSON-CRICK
A
C
45
A
N4
C
23
1_555
A
G
64
A
O6
G
35
1_555
hydrog
WATSON-CRICK
A
C
45
A
O2
C
23
1_555
A
G
64
A
N2
G
35
1_555
hydrog
WATSON-CRICK
A
G
46
A
N1
G
24
1_555
A
C
62
A
N3
C
33
1_555
hydrog
WATSON-CRICK
A
G
46
A
N2
G
24
1_555
A
C
62
A
O2
C
33
1_555
hydrog
WATSON-CRICK
A
G
46
A
O6
G
24
1_555
A
C
62
A
N4
C
33
1_555
hydrog
WATSON-CRICK
A
C
47
A
N3
C
25
1_555
A
G
61
A
N1
G
32
1_555
hydrog
WATSON-CRICK
A
C
47
A
N4
C
25
1_555
A
G
61
A
O6
G
32
1_555
hydrog
WATSON-CRICK
A
C
47
A
O2
C
25
1_555
A
G
61
A
N2
G
32
1_555
hydrog
WATSON-CRICK
A
C
48
A
N3
C
26
1_555
A
G
60
A
N1
G
31
1_555
hydrog
WATSON-CRICK
A
C
48
A
N4
C
26
1_555
A
G
60
A
O6
G
31
1_555
hydrog
WATSON-CRICK
A
C
48
A
O2
C
26
1_555
A
G
60
A
N2
G
31
1_555
hydrog
U-G MISPAIR
A
D
A
U
48
A
O2
U
27
1_555
A
G
48
A
N1
G
30
1_555
hydrog
U-C MISPAIR
A
U
63
A
O2
U
34
1_555
A
C
67
A
N4
C
38
1_555
hydrog
C-G PAIR
A
A
A
C
71
A
N4
C
42
1_555
A
G
74
A
O6
G
45
1_555
hydrog
C-G PAIR
B
B
A
C
71
A
N4
C
42
1_555
A
G
74
A
O6
G
45
1_555
hydrog
C-G PAIR
A
C
75
A
N4
C
46
1_555
A
G
78
A
O6
G
49
1_555
hydrog
WATSON-CRICK
B
G
24
B
N1
G
2
1_555
B
CCC
87
B
N3
CCC
58
1_555
hydrog
WATSON-CRICK
B
G
24
B
N2
G
2
1_555
B
CCC
87
B
O2
CCC
58
1_555
hydrog
WATSON-CRICK
B
G
24
B
O6
G
2
1_555
B
CCC
87
B
N4
CCC
58
1_555
hydrog
WATSON-CRICK
B
G
25
B
N1
G
3
1_555
B
C
86
B
N3
C
57
1_555
hydrog
WATSON-CRICK
B
G
25
B
N2
G
3
1_555
B
C
86
B
O2
C
57
1_555
hydrog
WATSON-CRICK
B
G
25
B
O6
G
3
1_555
B
C
86
B
N4
C
57
1_555
hydrog
WATSON-CRICK
B
G
26
B
N1
G
4
1_555
B
C
85
B
N3
C
56
1_555
hydrog
WATSON-CRICK
B
G
26
B
N2
G
4
1_555
B
C
85
B
O2
C
56
1_555
hydrog
WATSON-CRICK
B
G
26
B
O6
G
4
1_555
B
C
85
B
N4
C
56
1_555
hydrog
WATSON-CRICK
B
A
27
B
N1
A
5
1_555
B
U
84
B
N3
U
55
1_555
hydrog
WATSON-CRICK
B
A
27
B
N6
A
5
1_555
B
U
84
B
O4
U
55
1_555
hydrog
TYPE_28_PAIR
B
U
28
B
N3
U
6
1_555
B
G
83
B
O6
G
54
1_555
hydrog
TYPE_28_PAIR
B
U
28
B
O2
U
6
1_555
B
G
83
B
N1
G
54
1_555
hydrog
WATSON-CRICK
B
C
29
B
N3
C
7
1_555
B
G
82
B
N1
G
53
1_555
hydrog
WATSON-CRICK
B
C
29
B
N4
C
7
1_555
B
G
82
B
O6
G
53
1_555
hydrog
WATSON-CRICK
B
C
29
B
O2
C
7
1_555
B
G
82
B
N2
G
53
1_555
hydrog
TYPE_28_PAIR
B
U
30
B
N3
U
8
1_555
B
G
81
B
O6
G
52
1_555
hydrog
TYPE_28_PAIR
B
U
30
B
O2
U
8
1_555
B
G
81
B
N1
G
52
1_555
hydrog
G-A MISPAIR
B
G
31
B
N7
G
9
1_555
B
A
77
B
N6
A
48
1_555
hydrog
WATSON-CRICK
B
G
31
B
N1
G
9
1_555
B
C
80
B
N3
C
51
1_555
hydrog
WATSON-CRICK
B
G
31
B
N2
G
9
1_555
B
C
80
B
O2
C
51
1_555
hydrog
WATSON-CRICK
B
G
31
B
O6
G
9
1_555
B
C
80
B
N4
C
51
1_555
hydrog
U-A PAIR
B
U
32
B
O4
U
10
1_555
B
A
77
B
N6
A
48
1_555
hydrog
TYPE_28_PAIR
B
U
32
B
N3
U
10
1_555
B
G
79
B
O6
G
50
1_555
hydrog
TYPE_28_PAIR
B
U
32
B
O2
U
10
1_555
B
G
79
B
N1
G
50
1_555
hydrog
WATSON-CRICK
B
C
33
B
N3
C
11
1_555
B
G
78
B
N1
G
49
1_555
hydrog
WATSON-CRICK
B
C
33
B
N4
C
11
1_555
B
G
78
B
O6
G
49
1_555
hydrog
WATSON-CRICK
B
C
33
B
O2
C
11
1_555
B
G
78
B
N2
G
49
1_555
hydrog
A-G MISPAIR
B
A
34
B
N6
A
12
1_555
B
G
69
B
N7
G
40
1_555
hydrog
WATSON-CRICK
B
C
35
B
N3
C
13
1_555
B
G
74
B
N1
G
45
1_555
hydrog
WATSON-CRICK
B
C
35
B
N4
C
13
1_555
B
G
74
B
O6
G
45
1_555
hydrog
WATSON-CRICK
B
C
35
B
O2
C
13
1_555
B
G
74
B
N2
G
45
1_555
hydrog
WATSON-CRICK
B
C
36
B
N3
C
14
1_555
B
G
73
B
N1
G
44
1_555
hydrog
WATSON-CRICK
B
C
36
B
N4
C
14
1_555
B
G
73
B
O6
G
44
1_555
hydrog
WATSON-CRICK
B
C
36
B
O2
C
14
1_555
B
G
73
B
N2
G
44
1_555
hydrog
WATSON-CRICK
B
C
37
B
N3
C
15
1_555
B
G
70
B
N1
G
41
1_555
hydrog
WATSON-CRICK
B
C
37
B
N4
C
15
1_555
B
G
70
B
O6
G
41
1_555
hydrog
WATSON-CRICK
B
C
37
B
O2
C
15
1_555
B
G
70
B
N2
G
41
1_555
hydrog
WATSON-CRICK
B
C
38
B
N3
C
16
1_555
B
G
69
B
N1
G
40
1_555
hydrog
WATSON-CRICK
B
C
38
B
N4
C
16
1_555
B
G
69
B
O6
G
40
1_555
hydrog
WATSON-CRICK
B
C
38
B
O2
C
16
1_555
B
G
69
B
N2
G
40
1_555
hydrog
WATSON-CRICK
B
A
39
B
N1
A
17
1_555
B
U
68
B
N3
U
39
1_555
hydrog
WATSON-CRICK
B
A
39
B
N6
A
17
1_555
B
U
68
B
O4
U
39
1_555
hydrog
HOOGSTEEN
A
B
U
40
B
N3
U
18
1_555
B
A
43
B
N7
A
21
1_555
hydrog
HOOGSTEEN
B
B
U
40
B
N3
U
18
1_555
B
A
43
B
N7
A
21
1_555
hydrog
HOOGSTEEN
A
B
U
40
B
O4
U
18
1_555
B
A
43
B
N6
A
21
1_555
hydrog
HOOGSTEEN
B
B
U
40
B
O4
U
18
1_555
B
A
43
B
N6
A
21
1_555
hydrog
G-U MISPAIR
A
B
G
42
B
O6
G
20
1_555
B
U
63
B
N3
U
34
1_555
hydrog
G-U MISPAIR
B
B
G
42
B
O6
G
20
1_555
B
U
63
B
N3
U
34
1_555
hydrog
WATSON-CRICK
A
B
G
42
B
N1
G
20
1_555
B
C
67
B
N3
C
38
1_555
hydrog
WATSON-CRICK
B
B
G
42
B
N1
G
20
1_555
B
C
67
B
N3
C
38
1_555
hydrog
WATSON-CRICK
A
B
G
42
B
N2
G
20
1_555
B
C
67
B
O2
C
38
1_555
hydrog
WATSON-CRICK
B
B
G
42
B
N2
G
20
1_555
B
C
67
B
O2
C
38
1_555
hydrog
WATSON-CRICK
A
B
G
42
B
O6
G
20
1_555
B
C
67
B
N4
C
38
1_555
hydrog
WATSON-CRICK
B
B
G
42
B
O6
G
20
1_555
B
C
67
B
N4
C
38
1_555
hydrog
WATSON-CRICK
B
A
43
B
N1
A
21
1_555
B
U
66
B
N3
U
37
1_555
hydrog
WATSON-CRICK
B
A
43
B
N6
A
21
1_555
B
U
66
B
O4
U
37
1_555
hydrog
WATSON-CRICK
B
U
44
B
N3
U
22
1_555
B
A
65
B
N1
A
36
1_555
hydrog
WATSON-CRICK
B
U
44
B
O4
U
22
1_555
B
A
65
B
N6
A
36
1_555
hydrog
WATSON-CRICK
B
C
45
B
N3
C
23
1_555
B
G
64
B
N1
G
35
1_555
hydrog
WATSON-CRICK
B
C
45
B
N4
C
23
1_555
B
G
64
B
O6
G
35
1_555
hydrog
WATSON-CRICK
B
C
45
B
O2
C
23
1_555
B
G
64
B
N2
G
35
1_555
hydrog
WATSON-CRICK
B
G
46
B
N1
G
24
1_555
B
C
62
B
N3
C
33
1_555
hydrog
WATSON-CRICK
B
G
46
B
N2
G
24
1_555
B
C
62
B
O2
C
33
1_555
hydrog
WATSON-CRICK
B
G
46
B
O6
G
24
1_555
B
C
62
B
N4
C
33
1_555
hydrog
WATSON-CRICK
B
C
47
B
N3
C
25
1_555
B
G
61
B
N1
G
32
1_555
hydrog
WATSON-CRICK
B
C
47
B
N4
C
25
1_555
B
G
61
B
O6
G
32
1_555
hydrog
WATSON-CRICK
B
C
47
B
O2
C
25
1_555
B
G
61
B
N2
G
32
1_555
hydrog
WATSON-CRICK
B
C
48
B
N3
C
26
1_555
B
G
60
B
N1
G
31
1_555
hydrog
WATSON-CRICK
B
C
48
B
N4
C
26
1_555
B
G
60
B
O6
G
31
1_555
hydrog
WATSON-CRICK
B
C
48
B
O2
C
26
1_555
B
G
60
B
N2
G
31
1_555
hydrog
U-G MISPAIR
A
D
B
U
48
B
O2
U
27
1_555
B
G
48
B
N1
G
30
1_555
hydrog
U-C MISPAIR
B
U
63
B
O2
U
34
1_555
B
C
67
B
N4
C
38
1_555
hydrog
C-G PAIR
B
C
71
B
N4
C
42
1_555
B
G
74
B
O6
G
45
1_555
hydrog
C-G PAIR
B
C
75
B
N4
C
46
1_555
B
G
78
B
O6
G
49
1_555
RNA
non-coding RNA major groove base triple transcription, RNA
5LYU
PDB
1
1
5LYU
23
87
5LYU
23
87
5LYU
A
1
1
58
23
87
5LYU
23
87
5LYU
B
1
1
58
binding site for residue NA A 101
A
NA
101
Software
5
binding site for residue CL A 102
A
CL
102
Software
2
binding site for residue MG B 101
B
MG
101
Software
6
binding site for residue CL B 102
B
CL
102
Software
2
binding site for Di-nucleotide C B 86 and CCC B 87
B
C
86
Software
8
A
A
34
A
A
12
5
1_555
A
HOH
230
G
HOH
5
1_555
A
HOH
233
G
HOH
5
1_555
A
HOH
288
G
HOH
5
1_555
A
HOH
297
G
HOH
5
1_555
A
C
62
A
C
33
2
1_555
A
G
64
A
G
35
2
1_555
B
HOH
229
H
HOH
6
1_555
B
HOH
269
H
HOH
6
1_555
B
HOH
314
H
HOH
6
1_555
B
HOH
318
H
HOH
6
1_555
B
HOH
319
H
HOH
6
1_555
B
HOH
320
H
HOH
6
1_555
B
C
62
B
C
33
2
1_555
B
U
63
B
U
34
2
1_555
A
G
23
A
G
1
8
1_556
A
U
48
A
U
28
B
8
1_455
A
C
48
A
C
29
C
8
1_455
B
G
24
B
G
2
8
1_555
B
G
25
B
G
3
8
1_555
B
G
26
B
G
4
8
1_555
B
C
85
B
C
56
8
1_555
B
HOH
234
H
HOH
8
1_555
4
P 1 21 1