0.031650 0.000000 0.008910 0.000000 0.012335 0.000000 0.000000 0.000000 0.020256 0.00000 0.00000 0.00000 Kalayil, S. Bhogaraju, S. Dikic, I. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 105.72 90.00 31.596 81.073 51.287 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C5 H10 O5 150.130 alpha-D-ribofuranose alpha-D-ribose; D-ribose; ribose D-saccharide, alpha linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 S C N 76 N C N 77 N O N 78 N C N 79 N C N 80 N C N 81 N O N 82 N N N 83 N O N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N N N 95 S C N 96 N C N 97 N O N 98 N C N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 N C N 115 N C N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N N N 124 S C N 125 N C N 126 N O N 127 N C Y 128 N C Y 129 N N Y 130 N C Y 131 N C Y 132 N N N 133 N O N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N O N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 S C N 152 N C N 153 N C N 154 N C N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N N N 170 S C N 171 N C N 172 N O N 173 N C N 174 N C N 175 N C N 176 N C N 177 N O N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N N N 192 S C N 193 N C N 194 N O N 195 N C N 196 N C N 197 N C N 198 N C N 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C N 221 N C N 222 N S N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C Y 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N C N 266 N O N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N O N 277 N C N 278 R C N 279 N O N 280 S C N 281 N O N 282 R C N 283 N O N 284 S C N 285 N O N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N N N 297 S C N 298 N C N 299 N O N 300 N C N 301 N O N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N S N 311 N O N 312 N O N 313 N O N 314 N O N 315 N N N 316 S C N 317 N C N 318 N O N 319 R C N 320 N O N 321 N C N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N N N 333 S C N 334 N C N 335 N O N 336 N C Y 337 N C Y 338 N C Y 339 N C Y 340 N C Y 341 N C Y 342 N C N 343 N O N 344 N O N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N N N 357 S C N 358 N C N 359 N O N 360 N C N 361 N C N 362 N C N 363 N O N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N doub N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N doub N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N doub N 324 N sing N 325 N sing N 326 N sing N 327 N sing Y 328 N doub Y 329 N sing Y 330 N sing N 331 N sing Y 332 N doub N 333 N sing Y 334 N doub N 335 N sing Y 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N doub N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing Cell 1097-4172 167 1636 1649.e13 10.1016/j.cell.2016.11.019 27912065 Phosphoribosylation of Ubiquitin Promotes Serine Ubiquitination and Impairs Conventional Ubiquitination. 2016 10.2210/pdb5m93/pdb pdb_00005m93 100 1 PIXEL 2016-05-27 DECTRIS PILATUS 2M SINGLE WAVELENGTH M x-ray 1 1.00004 1.0 X06DA SLS 1.00004 SYNCHROTRON SLS BEAMLINE X06DA 8857.088 Polyubiquitin-B M1S 3 man polymer 96.063 SULFATE ION 2 syn non-polymer 150.130 alpha-D-ribofuranose 2 man non-polymer 18.015 water 112 nat water no no GPLGSQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG GPLGSQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG A,B,C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 80 UBB 9606 Homo sapiens 562 Escherichia coli PGEX-6P1 Biological sequence 1 2.47 50.2 VAPOR DIFFUSION, SITTING DROP 0.1M sodium acetate pH 4 - 5.5, 0.2M lithium sulfate and 30% PEG 8000 4-5.5 291 atom_site chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Atomic model Data collection Derived calculations Structure summary Data collection Database references Refinement description Structure summary 1 0 2016-12-14 2 0 2020-07-29 2 1 2024-01-17 _atom_site.auth_atom_id _atom_site.label_atom_id _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _struct_conn.ptnr2_label_atom_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession Germany LOEWE program Ubiquitin Networks (Ub-Net SPP 1580 DRibfa a-D-ribofuranose a-D-Ribf Rib N PDBE Y PDBE 2016-10-31 REL REL SO4 SULFATE ION RIB alpha-D-ribofuranose HOH water 1UBQ PDB experimental model SO4 1 2 SO4 SO4 101 A RIB 3 3 RIB RIB 101 B SO4 2 2 SO4 SO4 102 B RIB 2 3 RIB RIB 101 C HOH 101 4 HOH HOH 201 A HOH 57 4 HOH HOH 202 A HOH 38 4 HOH HOH 203 A HOH 5 4 HOH HOH 204 A HOH 7 4 HOH HOH 205 A HOH 13 4 HOH HOH 206 A HOH 46 4 HOH HOH 207 A HOH 14 4 HOH HOH 208 A HOH 50 4 HOH HOH 209 A HOH 3 4 HOH HOH 210 A HOH 102 4 HOH HOH 211 A HOH 39 4 HOH HOH 212 A HOH 43 4 HOH HOH 213 A HOH 103 4 HOH HOH 214 A HOH 12 4 HOH HOH 215 A HOH 4 4 HOH HOH 216 A HOH 9 4 HOH HOH 217 A HOH 2 4 HOH HOH 218 A HOH 44 4 HOH HOH 219 A HOH 6 4 HOH HOH 220 A HOH 8 4 HOH HOH 221 A HOH 45 4 HOH HOH 222 A HOH 17 4 HOH HOH 223 A HOH 56 4 HOH HOH 224 A HOH 1 4 HOH HOH 225 A HOH 40 4 HOH HOH 226 A HOH 16 4 HOH HOH 227 A HOH 33 4 HOH HOH 228 A HOH 42 4 HOH HOH 229 A HOH 32 4 HOH HOH 230 A HOH 53 4 HOH HOH 231 A HOH 37 4 HOH HOH 232 A HOH 54 4 HOH HOH 233 A HOH 49 4 HOH HOH 234 A HOH 94 4 HOH HOH 235 A HOH 41 4 HOH HOH 236 A HOH 105 4 HOH HOH 237 A HOH 118 4 HOH HOH 238 A HOH 63 4 HOH HOH 239 A HOH 58 4 HOH HOH 240 A HOH 48 4 HOH HOH 241 A HOH 91 4 HOH HOH 201 B HOH 75 4 HOH HOH 202 B HOH 81 4 HOH HOH 203 B HOH 11 4 HOH HOH 204 B HOH 20 4 HOH HOH 205 B HOH 79 4 HOH HOH 206 B HOH 21 4 HOH HOH 207 B HOH 114 4 HOH HOH 208 B HOH 19 4 HOH HOH 209 B HOH 77 4 HOH HOH 210 B HOH 18 4 HOH HOH 211 B HOH 68 4 HOH HOH 212 B HOH 110 4 HOH HOH 213 B HOH 66 4 HOH HOH 214 B HOH 22 4 HOH HOH 215 B HOH 112 4 HOH HOH 216 B HOH 78 4 HOH HOH 217 B HOH 67 4 HOH HOH 218 B HOH 74 4 HOH HOH 219 B HOH 69 4 HOH HOH 220 B HOH 80 4 HOH HOH 221 B HOH 108 4 HOH HOH 222 B HOH 107 4 HOH HOH 223 B HOH 82 4 HOH HOH 224 B HOH 113 4 HOH HOH 225 B HOH 109 4 HOH HOH 226 B HOH 64 4 HOH HOH 227 B HOH 71 4 HOH HOH 201 C HOH 92 4 HOH HOH 202 C HOH 24 4 HOH HOH 203 C HOH 15 4 HOH HOH 204 C HOH 27 4 HOH HOH 205 C HOH 28 4 HOH HOH 206 C HOH 119 4 HOH HOH 207 C HOH 35 4 HOH HOH 208 C HOH 70 4 HOH HOH 209 C HOH 60 4 HOH HOH 210 C HOH 62 4 HOH HOH 211 C HOH 121 4 HOH HOH 212 C HOH 55 4 HOH HOH 213 C HOH 65 4 HOH HOH 214 C HOH 100 4 HOH HOH 215 C HOH 115 4 HOH HOH 216 C HOH 116 4 HOH HOH 217 C HOH 59 4 HOH HOH 218 C HOH 88 4 HOH HOH 219 C HOH 61 4 HOH HOH 220 C HOH 34 4 HOH HOH 221 C HOH 117 4 HOH HOH 222 C HOH 83 4 HOH HOH 223 C HOH 52 4 HOH HOH 224 C HOH 31 4 HOH HOH 225 C HOH 97 4 HOH HOH 226 C HOH 25 4 HOH HOH 227 C HOH 90 4 HOH HOH 228 C HOH 104 4 HOH HOH 229 C HOH 111 4 HOH HOH 230 C HOH 99 4 HOH HOH 231 C HOH 98 4 HOH HOH 232 C HOH 51 4 HOH HOH 233 C HOH 73 4 HOH HOH 234 C HOH 95 4 HOH HOH 235 C HOH 23 4 HOH HOH 236 C HOH 106 4 HOH HOH 237 C HOH 93 4 HOH HOH 238 C HOH 10 4 HOH HOH 239 C HOH 72 4 HOH HOH 240 C HOH 96 4 HOH HOH 241 C HOH 89 4 HOH HOH 242 C HOH 30 4 HOH HOH 243 C HOH 36 4 HOH HOH 244 C n 1 -3 A n 2 -2 A n 3 -1 A n 4 0 A SER 1 n 5 SER 1 A GLN 2 n 6 GLN 2 A ILE 3 n 7 ILE 3 A PHE 4 n 8 PHE 4 A VAL 5 n 9 VAL 5 A LYS 6 n 10 LYS 6 A THR 7 n 11 THR 7 A LEU 8 n 12 LEU 8 A THR 9 n 13 THR 9 A GLY 10 n 14 GLY 10 A LYS 11 n 15 LYS 11 A THR 12 n 16 THR 12 A ILE 13 n 17 ILE 13 A THR 14 n 18 THR 14 A LEU 15 n 19 LEU 15 A GLU 16 n 20 GLU 16 A VAL 17 n 21 VAL 17 A GLU 18 n 22 GLU 18 A PRO 19 n 23 PRO 19 A SER 20 n 24 SER 20 A ASP 21 n 25 ASP 21 A THR 22 n 26 THR 22 A ILE 23 n 27 ILE 23 A GLU 24 n 28 GLU 24 A ASN 25 n 29 ASN 25 A VAL 26 n 30 VAL 26 A LYS 27 n 31 LYS 27 A ALA 28 n 32 ALA 28 A LYS 29 n 33 LYS 29 A ILE 30 n 34 ILE 30 A GLN 31 n 35 GLN 31 A ASP 32 n 36 ASP 32 A LYS 33 n 37 LYS 33 A GLU 34 n 38 GLU 34 A GLY 35 n 39 GLY 35 A ILE 36 n 40 ILE 36 A PRO 37 n 41 PRO 37 A PRO 38 n 42 PRO 38 A ASP 39 n 43 ASP 39 A GLN 40 n 44 GLN 40 A GLN 41 n 45 GLN 41 A ARG 42 n 46 ARG 42 A LEU 43 n 47 LEU 43 A ILE 44 n 48 ILE 44 A PHE 45 n 49 PHE 45 A ALA 46 n 50 ALA 46 A GLY 47 n 51 GLY 47 A LYS 48 n 52 LYS 48 A GLN 49 n 53 GLN 49 A LEU 50 n 54 LEU 50 A GLU 51 n 55 GLU 51 A ASP 52 n 56 ASP 52 A GLY 53 n 57 GLY 53 A ARG 54 n 58 ARG 54 A THR 55 n 59 THR 55 A LEU 56 n 60 LEU 56 A SER 57 n 61 SER 57 A ASP 58 n 62 ASP 58 A TYR 59 n 63 TYR 59 A ASN 60 n 64 ASN 60 A ILE 61 n 65 ILE 61 A GLN 62 n 66 GLN 62 A LYS 63 n 67 LYS 63 A GLU 64 n 68 GLU 64 A SER 65 n 69 SER 65 A THR 66 n 70 THR 66 A LEU 67 n 71 LEU 67 A HIS 68 n 72 HIS 68 A LEU 69 n 73 LEU 69 A VAL 70 n 74 VAL 70 A LEU 71 n 75 LEU 71 A ARG 72 n 76 ARG 72 A LEU 73 n 77 LEU 73 A ARG 74 n 78 ARG 74 A GLY 75 n 79 GLY 75 A n 80 76 A GLY -3 n 1 GLY -3 B PRO -2 n 2 PRO -2 B LEU -1 n 3 LEU -1 B GLY 0 n 4 GLY 0 B SER 1 n 5 SER 1 B GLN 2 n 6 GLN 2 B ILE 3 n 7 ILE 3 B PHE 4 n 8 PHE 4 B VAL 5 n 9 VAL 5 B LYS 6 n 10 LYS 6 B THR 7 n 11 THR 7 B LEU 8 n 12 LEU 8 B THR 9 n 13 THR 9 B GLY 10 n 14 GLY 10 B LYS 11 n 15 LYS 11 B THR 12 n 16 THR 12 B ILE 13 n 17 ILE 13 B THR 14 n 18 THR 14 B LEU 15 n 19 LEU 15 B GLU 16 n 20 GLU 16 B VAL 17 n 21 VAL 17 B GLU 18 n 22 GLU 18 B PRO 19 n 23 PRO 19 B SER 20 n 24 SER 20 B ASP 21 n 25 ASP 21 B THR 22 n 26 THR 22 B ILE 23 n 27 ILE 23 B GLU 24 n 28 GLU 24 B ASN 25 n 29 ASN 25 B VAL 26 n 30 VAL 26 B LYS 27 n 31 LYS 27 B ALA 28 n 32 ALA 28 B LYS 29 n 33 LYS 29 B ILE 30 n 34 ILE 30 B GLN 31 n 35 GLN 31 B ASP 32 n 36 ASP 32 B LYS 33 n 37 LYS 33 B GLU 34 n 38 GLU 34 B GLY 35 n 39 GLY 35 B ILE 36 n 40 ILE 36 B PRO 37 n 41 PRO 37 B PRO 38 n 42 PRO 38 B ASP 39 n 43 ASP 39 B GLN 40 n 44 GLN 40 B GLN 41 n 45 GLN 41 B ARG 42 n 46 ARG 42 B LEU 43 n 47 LEU 43 B ILE 44 n 48 ILE 44 B PHE 45 n 49 PHE 45 B ALA 46 n 50 ALA 46 B GLY 47 n 51 GLY 47 B LYS 48 n 52 LYS 48 B GLN 49 n 53 GLN 49 B LEU 50 n 54 LEU 50 B GLU 51 n 55 GLU 51 B ASP 52 n 56 ASP 52 B GLY 53 n 57 GLY 53 B ARG 54 n 58 ARG 54 B THR 55 n 59 THR 55 B LEU 56 n 60 LEU 56 B SER 57 n 61 SER 57 B ASP 58 n 62 ASP 58 B TYR 59 n 63 TYR 59 B ASN 60 n 64 ASN 60 B ILE 61 n 65 ILE 61 B GLN 62 n 66 GLN 62 B LYS 63 n 67 LYS 63 B GLU 64 n 68 GLU 64 B SER 65 n 69 SER 65 B THR 66 n 70 THR 66 B LEU 67 n 71 LEU 67 B HIS 68 n 72 HIS 68 B LEU 69 n 73 LEU 69 B VAL 70 n 74 VAL 70 B LEU 71 n 75 LEU 71 B ARG 72 n 76 ARG 72 B LEU 73 n 77 LEU 73 B n 78 74 B n 79 75 B n 80 76 B GLY -3 n 1 GLY -3 C PRO -2 n 2 PRO -2 C LEU -1 n 3 LEU -1 C GLY 0 n 4 GLY 0 C SER 1 n 5 SER 1 C GLN 2 n 6 GLN 2 C ILE 3 n 7 ILE 3 C PHE 4 n 8 PHE 4 C VAL 5 n 9 VAL 5 C LYS 6 n 10 LYS 6 C THR 7 n 11 THR 7 C LEU 8 n 12 LEU 8 C THR 9 n 13 THR 9 C GLY 10 n 14 GLY 10 C LYS 11 n 15 LYS 11 C THR 12 n 16 THR 12 C ILE 13 n 17 ILE 13 C THR 14 n 18 THR 14 C LEU 15 n 19 LEU 15 C GLU 16 n 20 GLU 16 C VAL 17 n 21 VAL 17 C GLU 18 n 22 GLU 18 C PRO 19 n 23 PRO 19 C SER 20 n 24 SER 20 C ASP 21 n 25 ASP 21 C THR 22 n 26 THR 22 C ILE 23 n 27 ILE 23 C GLU 24 n 28 GLU 24 C ASN 25 n 29 ASN 25 C VAL 26 n 30 VAL 26 C LYS 27 n 31 LYS 27 C ALA 28 n 32 ALA 28 C LYS 29 n 33 LYS 29 C ILE 30 n 34 ILE 30 C GLN 31 n 35 GLN 31 C ASP 32 n 36 ASP 32 C LYS 33 n 37 LYS 33 C GLU 34 n 38 GLU 34 C GLY 35 n 39 GLY 35 C ILE 36 n 40 ILE 36 C PRO 37 n 41 PRO 37 C PRO 38 n 42 PRO 38 C ASP 39 n 43 ASP 39 C GLN 40 n 44 GLN 40 C GLN 41 n 45 GLN 41 C ARG 42 n 46 ARG 42 C LEU 43 n 47 LEU 43 C ILE 44 n 48 ILE 44 C PHE 45 n 49 PHE 45 C ALA 46 n 50 ALA 46 C GLY 47 n 51 GLY 47 C LYS 48 n 52 LYS 48 C GLN 49 n 53 GLN 49 C LEU 50 n 54 LEU 50 C GLU 51 n 55 GLU 51 C ASP 52 n 56 ASP 52 C GLY 53 n 57 GLY 53 C ARG 54 n 58 ARG 54 C THR 55 n 59 THR 55 C LEU 56 n 60 LEU 56 C SER 57 n 61 SER 57 C ASP 58 n 62 ASP 58 C TYR 59 n 63 TYR 59 C ASN 60 n 64 ASN 60 C ILE 61 n 65 ILE 61 C GLN 62 n 66 GLN 62 C LYS 63 n 67 LYS 63 C GLU 64 n 68 GLU 64 C SER 65 n 69 SER 65 C THR 66 n 70 THR 66 C LEU 67 n 71 LEU 67 C HIS 68 n 72 HIS 68 C LEU 69 n 73 LEU 69 C VAL 70 n 74 VAL 70 C LEU 71 n 75 LEU 71 C ARG 72 n 76 ARG 72 C LEU 73 n 77 LEU 73 C ARG 74 n 78 ARG 74 C n 79 75 C n 80 76 C author_and_software_defined_assembly PISA 1 monomeric author_and_software_defined_assembly PISA 1 monomeric author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O LEU 15 A O LEU 19 A N ILE 3 A N ILE 7 A N PHE 4 A N PHE 8 A O LEU 67 A O LEU 71 A O VAL 70 A O VAL 74 A N ARG 42 A N ARG 46 A N PHE 45 A N PHE 49 A O LYS 48 A O LYS 52 B O LEU 15 B O LEU 19 B N ILE 3 B N ILE 7 B N PHE 4 B N PHE 8 B O LEU 67 B O LEU 71 B O HIS 68 B O HIS 72 B N ILE 44 B N ILE 48 B N PHE 45 B N PHE 49 B O LYS 48 B O LYS 52 C O VAL 17 C O VAL 21 C N SER 1 C N SER 5 C N PHE 4 C N PHE 8 C O LEU 67 C O LEU 71 C O HIS 68 C O HIS 72 C N ILE 44 C N ILE 48 C N PHE 45 C N PHE 49 C O LYS 48 C O LYS 52 1 A CG LYS 48 A CG LYS 52 1 Y 1 A CD LYS 48 A CD LYS 52 1 Y 1 A CE LYS 48 A CE LYS 52 1 Y 1 A NZ LYS 48 A NZ LYS 52 1 Y 1 A CG ARG 74 A CG ARG 78 1 Y 1 A CD ARG 74 A CD ARG 78 1 Y 1 A NE ARG 74 A NE ARG 78 1 Y 1 A CZ ARG 74 A CZ ARG 78 1 Y 1 A NH1 ARG 74 A NH1 ARG 78 1 Y 1 A NH2 ARG 74 A NH2 ARG 78 1 Y 1 B CG LEU 8 B CG LEU 12 1 Y 1 B CD1 LEU 8 B CD1 LEU 12 1 Y 1 B CD2 LEU 8 B CD2 LEU 12 1 Y 1 B CG LYS 11 B CG LYS 15 1 Y 1 B CD LYS 11 B CD LYS 15 1 Y 1 B CE LYS 11 B CE LYS 15 1 Y 1 B NZ LYS 11 B NZ LYS 15 1 Y 1 C CG ARG 74 C CG ARG 78 1 Y 1 C CD ARG 74 C CD ARG 78 1 Y 1 C NE ARG 74 C NE ARG 78 1 Y 1 C CZ ARG 74 C CZ ARG 78 1 Y 1 C NH1 ARG 74 C NH1 ARG 78 1 Y 1 C NH2 ARG 74 C NH2 ARG 78 1 Y 1 A GLY -3 A GLY 1 1 Y 1 A PRO -2 A PRO 2 1 Y 1 A LEU -1 A LEU 3 1 Y 1 A GLY 0 A GLY 4 1 Y 1 A GLY 76 A GLY 80 1 Y 1 B ARG 74 B ARG 78 1 Y 1 B GLY 75 B GLY 79 1 Y 1 B GLY 76 B GLY 80 1 Y 1 C GLY 75 C GLY 79 1 Y 1 C GLY 76 C GLY 80 1 Y 1 A A O O HOH HOH 235 240 1.46 1 C C O O HOH HOH 201 206 1.60 1 C C O O HOH HOH 214 218 1.65 1 A A O O HOH HOH 203 222 1.67 1 C C O O HOH HOH 210 238 1.67 1 C C O O HOH HOH 220 241 1.90 1 C C O O HOH HOH 240 242 1.95 1 B B O O HOH HOH 221 225 2.01 1 C C O O HOH HOH 210 241 2.06 1 A A O O HOH HOH 231 238 2.09 1 C C O O HOH HOH 238 241 2.12 1 A A O1 O SO4 HOH 101 201 2.17 1 B B O O GLY HOH 35 201 2.18 1 C C O O GLY HOH 35 201 2.18 1 7.13 0.90 118.30 125.43 C C C CB CG OD1 ASP ASP ASP 52 52 52 N 1 -5.48 0.90 118.30 112.82 C C C CB CG OD2 ASP ASP ASP 52 52 52 N 1 B C O O HOH HOH 202 202 1.56 1_555 1_556 1 B C O O HOH HOH 201 209 1.59 1_555 1_656 1 A ARG 74 179.53 -41.25 19.991 -0.45 0.00 -0.28 1.41 0.00 -0.69 0.953 0.922 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.23104 0.18857 0.19070 1.793 49.37 1147 21807 5.0 98.30 3.387 0.102 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.129 0.127 0.80 0.80 1.20 1UBQ MAXIMUM LIKELIHOOD MASK 1.793 49.37 112 1929 28 0 1789 0.019 0.019 1861 0.001 0.020 1840 2.038 2.013 2524 0.897 3.000 4270 6.828 5.000 235 37.819 26.203 79 13.986 15.000 355 18.989 15.000 9 0.113 0.200 309 0.009 0.021 2053 0.001 0.020 360 1.929 1.740 931 1.925 1.740 930 2.874 2.594 1163 2.873 2.595 1164 3.257 2.165 930 3.244 2.144 922 5.053 3.071 1348 7.165 14.308 1993 7.164 14.325 1994 0.338 0.311 1.840 83 1586 20 96.03 1.793 49.37 5M93 22956 0.995 0.1224 1 8.24 3.4 98 0.7956 1.793 1.857 1.38 0.535 1 3.1 96 refinement REFMAC 5.8.0073 data reduction XDS data scaling SCALA phasing PHASER N Crystal structure of SdeA-modified ubiquitin. 1 N N 1 N N 1 N N 2 N N 3 N N 2 N N 3 N N 4 N N 4 N N 4 N N A THR 22 A THR 26 HELX_P A GLY 35 A GLY 39 1 AA1 14 A PRO 37 A PRO 41 HELX_P A ASP 39 A ASP 43 5 AA2 3 B THR 22 B THR 26 HELX_P B GLY 35 B GLY 39 1 AA3 14 B PRO 37 B PRO 41 HELX_P B ASP 39 B ASP 43 5 AA4 3 B LEU 56 B LEU 60 HELX_P B ASN 60 B ASN 64 5 AA5 5 C THR 22 C THR 26 HELX_P C GLY 35 C GLY 39 1 AA6 14 C PRO 37 C PRO 41 HELX_P C ASP 39 C ASP 43 5 AA7 3 covale 1.476 one B ARG 42 B NH1 ARG 46 1_555 B RIB 101 E C1 RIB 1_555 covale 1.485 one C ARG 42 C NH1 ARG 46 1_555 C RIB 101 G C1 RIB 1_555 SIGNALING PROTEIN Post translational modification, Ubiquitin, Phosphoribosylation, SdeA, signaling protein UBB_HUMAN UNP 1 76 P0CG47 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 152 5M93 0 76 P0CG47 A 1 4 80 76 152 5M93 0 76 P0CG47 B 1 4 80 76 152 5M93 0 76 P0CG47 C 1 4 80 1 expression tag GLY -3 5M93 A P0CG47 UNP 1 1 expression tag PRO -2 5M93 A P0CG47 UNP 2 1 expression tag LEU -1 5M93 A P0CG47 UNP 3 1 MET conflict SER 1 5M93 A P0CG47 UNP 77 5 2 expression tag GLY -3 5M93 B P0CG47 UNP 1 2 expression tag PRO -2 5M93 B P0CG47 UNP 2 2 expression tag LEU -1 5M93 B P0CG47 UNP 3 2 MET conflict SER 1 5M93 B P0CG47 UNP 77 5 3 expression tag GLY -3 5M93 C P0CG47 UNP 1 3 expression tag PRO -2 5M93 C P0CG47 UNP 2 3 expression tag LEU -1 5M93 C P0CG47 UNP 3 3 MET conflict SER 1 5M93 C P0CG47 UNP 77 5 5 5 5 anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A THR 12 A THR 16 A GLU 16 A GLU 20 A GLN 2 A GLN 6 A THR 7 A THR 11 A THR 66 A THR 70 A LEU 71 A LEU 75 A GLN 41 A GLN 45 A PHE 45 A PHE 49 A LYS 48 A LYS 52 A GLN 49 A GLN 53 B THR 12 B THR 16 B VAL 17 B VAL 21 B SER 1 B SER 5 B LYS 6 B LYS 10 B THR 66 B THR 70 B LEU 71 B LEU 75 B GLN 41 B GLN 45 B PHE 45 B PHE 49 B LYS 48 B LYS 52 B GLN 49 B GLN 53 C THR 12 C THR 16 C VAL 17 C VAL 21 C SER 1 C SER 5 C LYS 6 C LYS 10 C THR 66 C THR 70 C LEU 71 C LEU 75 C GLN 41 C GLN 45 C PHE 45 C PHE 49 C LYS 48 C LYS 52 C GLN 49 C GLN 53 4 P 1 21 1