0.012470
0.007200
0.000000
0.000000
0.014400
0.000000
0.000000
0.000000
0.003405
0.00000
0.00000
0.00000
Quistgaard, E.M.
Molledo, M.M.
Nordlund, P.
Loew, C.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
80.190
80.190
293.690
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
PLoS ONE
1932-6203
12
e0173126
e0173126
10.1371/journal.pone.0173126
28264013
Structure determination of a major facilitator peptide transporter: Inward facing PepTSt from Streptococcus thermophilus crystallized in space group P3121.
2017
100
1
CCD
2012-07-05
ADSC QUANTUM 315
Double crystal
SINGLE WAVELENGTH
M
x-ray
1
0.9795
1.0
I04
Diamond
0.9795
SYNCHROTRON
DIAMOND BEAMLINE I04
53648.074
Di-or tripeptide:H+ symporter
1
man
polymer
no
no
MEDKGKTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADR
IIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAF
IAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNL
VGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFP
VSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGE
MLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQ
GVEAENLYFQ
MEDKGKTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADR
IIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAF
IAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNL
VGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFP
VSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGE
MLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQ
GVEAENLYFQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
490
BAA-250
dtpT, stu0970
264199
Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311)
562
Escherichia coli
Biological sequence
1
5.08
75.79
Rod-shaped crystal
VAPOR DIFFUSION, SITTING DROP
8.0
0.05 M HEPES pH 8.0, 30% PEG550 MME, 1.2% Fos-Choline 10
277
citation
citation_author
repository
Initial release
Database references
1
0
2017-01-25
1
1
2017-10-04
_citation.country
_citation.journal_abbrev
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.title
_citation.year
Sweden
Swedish Research Council
621-2013-5905
European Communitys Seventh Framework Programme (FP7/2007-2013) under BioStruct-X
N
PDBE
Y
PDBE
2016-12-12
REL
REL
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
GLN
11
n
11
GLN
11
A
PRO
12
n
12
PRO
12
A
LEU
13
n
13
LEU
13
A
GLY
14
n
14
GLY
14
A
LEU
15
n
15
LEU
15
A
SER
16
n
16
SER
16
A
THR
17
n
17
THR
17
A
LEU
18
n
18
LEU
18
A
PHE
19
n
19
PHE
19
A
MET
20
n
20
MET
20
A
THR
21
n
21
THR
21
A
GLU
22
n
22
GLU
22
A
MET
23
n
23
MET
23
A
TRP
24
n
24
TRP
24
A
GLU
25
n
25
GLU
25
A
ARG
26
n
26
ARG
26
A
PHE
27
n
27
PHE
27
A
SER
28
n
28
SER
28
A
TYR
29
n
29
TYR
29
A
TYR
30
n
30
TYR
30
A
GLY
31
n
31
GLY
31
A
MET
32
n
32
MET
32
A
ARG
33
n
33
ARG
33
A
ALA
34
n
34
ALA
34
A
ILE
35
n
35
ILE
35
A
LEU
36
n
36
LEU
36
A
LEU
37
n
37
LEU
37
A
TYR
38
n
38
TYR
38
A
TYR
39
n
39
TYR
39
A
MET
40
n
40
MET
40
A
TRP
41
n
41
TRP
41
A
PHE
42
n
42
PHE
42
A
LEU
43
n
43
LEU
43
A
ILE
44
n
44
ILE
44
A
SER
45
n
45
SER
45
A
THR
46
n
46
THR
46
A
GLY
47
n
47
GLY
47
A
ASP
48
n
48
ASP
48
A
LEU
49
n
49
LEU
49
A
HIS
50
n
50
HIS
50
A
ILE
51
n
51
ILE
51
A
THR
52
n
52
THR
52
A
ARG
53
n
53
ARG
53
A
ALA
54
n
54
ALA
54
A
THR
55
n
55
THR
55
A
ALA
56
n
56
ALA
56
A
ALA
57
n
57
ALA
57
A
SER
58
n
58
SER
58
A
ILE
59
n
59
ILE
59
A
MET
60
n
60
MET
60
A
ALA
61
n
61
ALA
61
A
ILE
62
n
62
ILE
62
A
TYR
63
n
63
TYR
63
A
ALA
64
n
64
ALA
64
A
SER
65
n
65
SER
65
A
MET
66
n
66
MET
66
A
VAL
67
n
67
VAL
67
A
TYR
68
n
68
TYR
68
A
LEU
69
n
69
LEU
69
A
SER
70
n
70
SER
70
A
GLY
71
n
71
GLY
71
A
THR
72
n
72
THR
72
A
ILE
73
n
73
ILE
73
A
GLY
74
n
74
GLY
74
A
GLY
75
n
75
GLY
75
A
PHE
76
n
76
PHE
76
A
VAL
77
n
77
VAL
77
A
ALA
78
n
78
ALA
78
A
ASP
79
n
79
ASP
79
A
ARG
80
n
80
ARG
80
A
ILE
81
n
81
ILE
81
A
ILE
82
n
82
ILE
82
A
GLY
83
n
83
GLY
83
A
ALA
84
n
84
ALA
84
A
ARG
85
n
85
ARG
85
A
PRO
86
n
86
PRO
86
A
ALA
87
n
87
ALA
87
A
VAL
88
n
88
VAL
88
A
PHE
89
n
89
PHE
89
A
TRP
90
n
90
TRP
90
A
GLY
91
n
91
GLY
91
A
GLY
92
n
92
GLY
92
A
VAL
93
n
93
VAL
93
A
LEU
94
n
94
LEU
94
A
ILE
95
n
95
ILE
95
A
MET
96
n
96
MET
96
A
LEU
97
n
97
LEU
97
A
GLY
98
n
98
GLY
98
A
HIS
99
n
99
HIS
99
A
ILE
100
n
100
ILE
100
A
VAL
101
n
101
VAL
101
A
LEU
102
n
102
LEU
102
A
ALA
103
n
103
ALA
103
A
LEU
104
n
104
LEU
104
A
PRO
105
n
105
PRO
105
A
PHE
106
n
106
PHE
106
A
GLY
107
n
107
GLY
107
A
ALA
108
n
108
ALA
108
A
SER
109
n
109
SER
109
A
ALA
110
n
110
ALA
110
A
LEU
111
n
111
LEU
111
A
PHE
112
n
112
PHE
112
A
GLY
113
n
113
GLY
113
A
SER
114
n
114
SER
114
A
ILE
115
n
115
ILE
115
A
ILE
116
n
116
ILE
116
A
LEU
117
n
117
LEU
117
A
ILE
118
n
118
ILE
118
A
ILE
119
n
119
ILE
119
A
ILE
120
n
120
ILE
120
A
GLY
121
n
121
GLY
121
A
THR
122
n
122
THR
122
A
GLY
123
n
123
GLY
123
A
PHE
124
n
124
PHE
124
A
LEU
125
n
125
LEU
125
A
LYS
126
n
126
LYS
126
A
PRO
127
n
127
PRO
127
A
ASN
128
n
128
ASN
128
A
VAL
129
n
129
VAL
129
A
SER
130
n
130
SER
130
A
THR
131
n
131
THR
131
A
LEU
132
n
132
LEU
132
A
VAL
133
n
133
VAL
133
A
GLY
134
n
134
GLY
134
A
THR
135
n
135
THR
135
A
LEU
136
n
136
LEU
136
A
TYR
137
n
137
TYR
137
A
ASP
138
n
138
ASP
138
A
GLU
139
n
139
GLU
139
A
HIS
140
n
140
HIS
140
A
ASP
141
n
141
ASP
141
A
ARG
142
n
142
ARG
142
A
ARG
143
n
143
ARG
143
A
ARG
144
n
144
ARG
144
A
ASP
145
n
145
ASP
145
A
ALA
146
n
146
ALA
146
A
GLY
147
n
147
GLY
147
A
PHE
148
n
148
PHE
148
A
SER
149
n
149
SER
149
A
ILE
150
n
150
ILE
150
A
PHE
151
n
151
PHE
151
A
VAL
152
n
152
VAL
152
A
PHE
153
n
153
PHE
153
A
GLY
154
n
154
GLY
154
A
ILE
155
n
155
ILE
155
A
ASN
156
n
156
ASN
156
A
LEU
157
n
157
LEU
157
A
GLY
158
n
158
GLY
158
A
ALA
159
n
159
ALA
159
A
PHE
160
n
160
PHE
160
A
ILE
161
n
161
ILE
161
A
ALA
162
n
162
ALA
162
A
PRO
163
n
163
PRO
163
A
LEU
164
n
164
LEU
164
A
ILE
165
n
165
ILE
165
A
VAL
166
n
166
VAL
166
A
GLY
167
n
167
GLY
167
A
ALA
168
n
168
ALA
168
A
ALA
169
n
169
ALA
169
A
GLN
170
n
170
GLN
170
A
GLU
171
n
171
GLU
171
A
ALA
172
n
172
ALA
172
A
ALA
173
n
173
ALA
173
A
GLY
174
n
174
GLY
174
A
TYR
175
n
175
TYR
175
A
HIS
176
n
176
HIS
176
A
VAL
177
n
177
VAL
177
A
ALA
178
n
178
ALA
178
A
PHE
179
n
179
PHE
179
A
SER
180
n
180
SER
180
A
LEU
181
n
181
LEU
181
A
ALA
182
n
182
ALA
182
A
ALA
183
n
183
ALA
183
A
ILE
184
n
184
ILE
184
A
GLY
185
n
185
GLY
185
A
MET
186
n
186
MET
186
A
PHE
187
n
187
PHE
187
A
ILE
188
n
188
ILE
188
A
GLY
189
n
189
GLY
189
A
LEU
190
n
190
LEU
190
A
LEU
191
n
191
LEU
191
A
VAL
192
n
192
VAL
192
A
TYR
193
n
193
TYR
193
A
TYR
194
n
194
TYR
194
A
PHE
195
n
195
PHE
195
A
GLY
196
n
196
GLY
196
A
GLY
197
n
197
GLY
197
A
LYS
198
n
198
LYS
198
A
LYS
199
n
199
LYS
199
A
THR
200
n
200
THR
200
A
LEU
201
n
201
LEU
201
A
ASP
202
n
202
ASP
202
A
PRO
203
n
203
PRO
203
A
HIS
204
n
204
HIS
204
A
TYR
205
n
205
TYR
205
A
LEU
206
n
206
LEU
206
A
ARG
207
n
207
ARG
207
A
PRO
208
n
208
PRO
208
A
THR
209
n
209
THR
209
A
ASP
210
n
210
ASP
210
A
PRO
211
n
211
PRO
211
A
n
212
212
A
n
213
213
A
n
214
214
A
GLU
215
n
215
GLU
215
A
GLU
216
n
216
GLU
216
A
VAL
217
n
217
VAL
217
A
LYS
218
n
218
LYS
218
A
PRO
219
n
219
PRO
219
A
LEU
220
n
220
LEU
220
A
LEU
221
n
221
LEU
221
A
VAL
222
n
222
VAL
222
A
LYS
223
n
223
LYS
223
A
VAL
224
n
224
VAL
224
A
SER
225
n
225
SER
225
A
LEU
226
n
226
LEU
226
A
ALA
227
n
227
ALA
227
A
VAL
228
n
228
VAL
228
A
ALA
229
n
229
ALA
229
A
GLY
230
n
230
GLY
230
A
PHE
231
n
231
PHE
231
A
ILE
232
n
232
ILE
232
A
ALA
233
n
233
ALA
233
A
ILE
234
n
234
ILE
234
A
ILE
235
n
235
ILE
235
A
VAL
236
n
236
VAL
236
A
VAL
237
n
237
VAL
237
A
MET
238
n
238
MET
238
A
ASN
239
n
239
ASN
239
A
LEU
240
n
240
LEU
240
A
VAL
241
n
241
VAL
241
A
GLY
242
n
242
GLY
242
A
TRP
243
n
243
TRP
243
A
ASN
244
n
244
ASN
244
A
SER
245
n
245
SER
245
A
LEU
246
n
246
LEU
246
A
PRO
247
n
247
PRO
247
A
ALA
248
n
248
ALA
248
A
TYR
249
n
249
TYR
249
A
ILE
250
n
250
ILE
250
A
ASN
251
n
251
ASN
251
A
LEU
252
n
252
LEU
252
A
LEU
253
n
253
LEU
253
A
THR
254
n
254
THR
254
A
ILE
255
n
255
ILE
255
A
VAL
256
n
256
VAL
256
A
ALA
257
n
257
ALA
257
A
ILE
258
n
258
ILE
258
A
ALA
259
n
259
ALA
259
A
ILE
260
n
260
ILE
260
A
PRO
261
n
261
PRO
261
A
VAL
262
n
262
VAL
262
A
PHE
263
n
263
PHE
263
A
TYR
264
n
264
TYR
264
A
n
265
265
A
n
266
266
A
n
267
267
A
n
268
268
A
n
269
269
A
n
270
270
A
n
271
271
A
n
272
272
A
n
273
273
A
n
274
274
A
THR
275
n
275
THR
275
A
SER
276
n
276
SER
276
A
THR
277
n
277
THR
277
A
GLU
278
n
278
GLU
278
A
HIS
279
n
279
HIS
279
A
LEU
280
n
280
LEU
280
A
ARG
281
n
281
ARG
281
A
VAL
282
n
282
VAL
282
A
VAL
283
n
283
VAL
283
A
SER
284
n
284
SER
284
A
TYR
285
n
285
TYR
285
A
ILE
286
n
286
ILE
286
A
PRO
287
n
287
PRO
287
A
LEU
288
n
288
LEU
288
A
PHE
289
n
289
PHE
289
A
ILE
290
n
290
ILE
290
A
ALA
291
n
291
ALA
291
A
ALA
292
n
292
ALA
292
A
VAL
293
n
293
VAL
293
A
LEU
294
n
294
LEU
294
A
PHE
295
n
295
PHE
295
A
TRP
296
n
296
TRP
296
A
ALA
297
n
297
ALA
297
A
ILE
298
n
298
ILE
298
A
GLU
299
n
299
GLU
299
A
GLU
300
n
300
GLU
300
A
GLN
301
n
301
GLN
301
A
GLY
302
n
302
GLY
302
A
SER
303
n
303
SER
303
A
VAL
304
n
304
VAL
304
A
VAL
305
n
305
VAL
305
A
LEU
306
n
306
LEU
306
A
ALA
307
n
307
ALA
307
A
THR
308
n
308
THR
308
A
PHE
309
n
309
PHE
309
A
ALA
310
n
310
ALA
310
A
ALA
311
n
311
ALA
311
A
GLU
312
n
312
GLU
312
A
ARG
313
n
313
ARG
313
A
VAL
314
n
314
VAL
314
A
ASP
315
n
315
ASP
315
A
SER
316
n
316
SER
316
A
SER
317
n
317
SER
317
A
TRP
318
n
318
TRP
318
A
PHE
319
n
319
PHE
319
A
PRO
320
n
320
PRO
320
A
VAL
321
n
321
VAL
321
A
SER
322
n
322
SER
322
A
TRP
323
n
323
TRP
323
A
PHE
324
n
324
PHE
324
A
GLN
325
n
325
GLN
325
A
SER
326
n
326
SER
326
A
LEU
327
n
327
LEU
327
A
ASN
328
n
328
ASN
328
A
PRO
329
n
329
PRO
329
A
LEU
330
n
330
LEU
330
A
PHE
331
n
331
PHE
331
A
ILE
332
n
332
ILE
332
A
MET
333
n
333
MET
333
A
LEU
334
n
334
LEU
334
A
TYR
335
n
335
TYR
335
A
THR
336
n
336
THR
336
A
PRO
337
n
337
PRO
337
A
PHE
338
n
338
PHE
338
A
PHE
339
n
339
PHE
339
A
ALA
340
n
340
ALA
340
A
TRP
341
n
341
TRP
341
A
LEU
342
n
342
LEU
342
A
TRP
343
n
343
TRP
343
A
THR
344
n
344
THR
344
A
n
345
345
A
n
346
346
A
n
347
347
A
n
348
348
A
n
349
349
A
n
350
350
A
n
351
351
A
SER
352
n
352
SER
352
A
SER
353
n
353
SER
353
A
PRO
354
n
354
PRO
354
A
THR
355
n
355
THR
355
A
LYS
356
n
356
LYS
356
A
PHE
357
n
357
PHE
357
A
ALA
358
n
358
ALA
358
A
VAL
359
n
359
VAL
359
A
GLY
360
n
360
GLY
360
A
LEU
361
n
361
LEU
361
A
MET
362
n
362
MET
362
A
PHE
363
n
363
PHE
363
A
ALA
364
n
364
ALA
364
A
GLY
365
n
365
GLY
365
A
LEU
366
n
366
LEU
366
A
SER
367
n
367
SER
367
A
PHE
368
n
368
PHE
368
A
LEU
369
n
369
LEU
369
A
LEU
370
n
370
LEU
370
A
MET
371
n
371
MET
371
A
ALA
372
n
372
ALA
372
A
ILE
373
n
373
ILE
373
A
PRO
374
n
374
PRO
374
A
GLY
375
n
375
GLY
375
A
ALA
376
n
376
ALA
376
A
LEU
377
n
377
LEU
377
A
TYR
378
n
378
TYR
378
A
GLY
379
n
379
GLY
379
A
THR
380
n
380
THR
380
A
SER
381
n
381
SER
381
A
GLY
382
n
382
GLY
382
A
LYS
383
n
383
LYS
383
A
VAL
384
n
384
VAL
384
A
SER
385
n
385
SER
385
A
PRO
386
n
386
PRO
386
A
LEU
387
n
387
LEU
387
A
TRP
388
n
388
TRP
388
A
LEU
389
n
389
LEU
389
A
VAL
390
n
390
VAL
390
A
GLY
391
n
391
GLY
391
A
SER
392
n
392
SER
392
A
TRP
393
n
393
TRP
393
A
ALA
394
n
394
ALA
394
A
LEU
395
n
395
LEU
395
A
VAL
396
n
396
VAL
396
A
ILE
397
n
397
ILE
397
A
LEU
398
n
398
LEU
398
A
GLY
399
n
399
GLY
399
A
GLU
400
n
400
GLU
400
A
MET
401
n
401
MET
401
A
LEU
402
n
402
LEU
402
A
ILE
403
n
403
ILE
403
A
n
404
404
A
n
405
405
A
n
406
406
A
n
407
407
A
n
408
408
A
n
409
409
A
n
410
410
A
n
411
411
A
n
412
412
A
n
413
413
A
n
414
414
A
n
415
415
A
n
416
416
A
n
417
417
A
n
418
418
A
n
419
419
A
n
420
420
A
SER
421
n
421
SER
421
A
GLN
422
n
422
GLN
422
A
MET
423
n
423
MET
423
A
MET
424
n
424
MET
424
A
SER
425
n
425
SER
425
A
MET
426
n
426
MET
426
A
TRP
427
n
427
TRP
427
A
PHE
428
n
428
PHE
428
A
LEU
429
n
429
LEU
429
A
SER
430
n
430
SER
430
A
SER
431
n
431
SER
431
A
SER
432
n
432
SER
432
A
VAL
433
n
433
VAL
433
A
GLY
434
n
434
GLY
434
A
SER
435
n
435
SER
435
A
ALA
436
n
436
ALA
436
A
LEU
437
n
437
LEU
437
A
ASN
438
n
438
ASN
438
A
ALA
439
n
439
ALA
439
A
GLN
440
n
440
GLN
440
A
LEU
441
n
441
LEU
441
A
VAL
442
n
442
VAL
442
A
THR
443
n
443
THR
443
A
LEU
444
n
444
LEU
444
A
TYR
445
n
445
TYR
445
A
ASN
446
n
446
ASN
446
A
ALA
447
n
447
ALA
447
A
LYS
448
n
448
LYS
448
A
SER
449
n
449
SER
449
A
GLU
450
n
450
GLU
450
A
VAL
451
n
451
VAL
451
A
ALA
452
n
452
ALA
452
A
TYR
453
n
453
TYR
453
A
PHE
454
n
454
PHE
454
A
SER
455
n
455
SER
455
A
TYR
456
n
456
TYR
456
A
PHE
457
n
457
PHE
457
A
GLY
458
n
458
GLY
458
A
LEU
459
n
459
LEU
459
A
GLY
460
n
460
GLY
460
A
SER
461
n
461
SER
461
A
VAL
462
n
462
VAL
462
A
VAL
463
n
463
VAL
463
A
LEU
464
n
464
LEU
464
A
GLY
465
n
465
GLY
465
A
ILE
466
n
466
ILE
466
A
VAL
467
n
467
VAL
467
A
LEU
468
n
468
LEU
468
A
VAL
469
n
469
VAL
469
A
PHE
470
n
470
PHE
470
A
LEU
471
n
471
LEU
471
A
SER
472
n
472
SER
472
A
n
473
473
A
n
474
474
A
n
475
475
A
n
476
476
A
n
477
477
A
n
478
478
A
n
479
479
A
n
480
480
A
n
481
481
A
n
482
482
A
n
483
483
A
n
484
484
A
n
485
485
A
n
486
486
A
n
487
487
A
n
488
488
A
n
489
489
A
n
490
490
A
5.4879
1.1137
1.3581
3.2331
1.4566
5.2727
-0.3592
0.6528
-0.0744
-1.3202
0.5745
0.0902
-0.1144
0.0518
-0.0971
1.3796
-0.6503
-0.3807
0.5457
0.0886
0.5299
refined
85.5225
-29.2027
25.7457
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain 'A'
author_and_software_defined_assembly
PISA
1
monomeric
0
0
20450
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
MET
1
A
MET
1
1
Y
1
A
GLU
2
A
GLU
2
1
Y
1
A
ASP
3
A
ASP
3
1
Y
1
A
LYS
4
A
LYS
4
1
Y
1
A
GLY
5
A
GLY
5
1
Y
1
A
LYS
6
A
LYS
6
1
Y
1
A
THR
7
A
THR
7
1
Y
1
A
PHE
8
A
PHE
8
1
Y
1
A
PHE
9
A
PHE
9
1
Y
1
A
GLY
10
A
GLY
10
1
Y
1
A
LEU
212
A
LEU
212
1
Y
1
A
ALA
213
A
ALA
213
1
Y
1
A
PRO
214
A
PRO
214
1
Y
1
A
PHE
265
A
PHE
265
1
Y
1
A
ALA
266
A
ALA
266
1
Y
1
A
TRP
267
A
TRP
267
1
Y
1
A
MET
268
A
MET
268
1
Y
1
A
ILE
269
A
ILE
269
1
Y
1
A
SER
270
A
SER
270
1
Y
1
A
SER
271
A
SER
271
1
Y
1
A
VAL
272
A
VAL
272
1
Y
1
A
LYS
273
A
LYS
273
1
Y
1
A
VAL
274
A
VAL
274
1
Y
1
A
ALA
345
A
ALA
345
1
Y
1
A
TRP
346
A
TRP
346
1
Y
1
A
LYS
347
A
LYS
347
1
Y
1
A
LYS
348
A
LYS
348
1
Y
1
A
ASN
349
A
ASN
349
1
Y
1
A
GLN
350
A
GLN
350
1
Y
1
A
PRO
351
A
PRO
351
1
Y
1
A
SER
404
A
SER
404
1
Y
1
A
PRO
405
A
PRO
405
1
Y
1
A
VAL
406
A
VAL
406
1
Y
1
A
GLY
407
A
GLY
407
1
Y
1
A
LEU
408
A
LEU
408
1
Y
1
A
SER
409
A
SER
409
1
Y
1
A
VAL
410
A
VAL
410
1
Y
1
A
THR
411
A
THR
411
1
Y
1
A
THR
412
A
THR
412
1
Y
1
A
LYS
413
A
LYS
413
1
Y
1
A
LEU
414
A
LEU
414
1
Y
1
A
ALA
415
A
ALA
415
1
Y
1
A
PRO
416
A
PRO
416
1
Y
1
A
LYS
417
A
LYS
417
1
Y
1
A
ALA
418
A
ALA
418
1
Y
1
A
PHE
419
A
PHE
419
1
Y
1
A
ASN
420
A
ASN
420
1
Y
1
A
LYS
473
A
LYS
473
1
Y
1
A
ARG
474
A
ARG
474
1
Y
1
A
ILE
475
A
ILE
475
1
Y
1
A
GLN
476
A
GLN
476
1
Y
1
A
GLY
477
A
GLY
477
1
Y
1
A
LEU
478
A
LEU
478
1
Y
1
A
MET
479
A
MET
479
1
Y
1
A
GLN
480
A
GLN
480
1
Y
1
A
GLY
481
A
GLY
481
1
Y
1
A
VAL
482
A
VAL
482
1
Y
1
A
GLU
483
A
GLU
483
1
Y
1
A
ALA
484
A
ALA
484
1
Y
1
A
GLU
485
A
GLU
485
1
Y
1
A
ASN
486
A
ASN
486
1
Y
1
A
LEU
487
A
LEU
487
1
Y
1
A
TYR
488
A
TYR
488
1
Y
1
A
PHE
489
A
PHE
489
1
Y
1
A
GLN
490
A
GLN
490
1
Y
1
A
ILE
81
-124.73
-57.53
1
A
VAL
304
-127.02
-72.57
1
A
ASP
315
-69.98
98.78
127.1
The data set used for refinement was truncated and anisotropically scaled using the Diffraction Anisotropy Server (https://services.mbi.ucla.edu/anisoscale/). Cut-off values for truncation: 3.9 A in the a-direction, 3.7 A in the b-direction and 3.4 A in the best diffracting c-direction of the crystal.
0.2861
0.2652
0.2662
3.4
44.85
589
11292
4.96
74.7
0.37
Random
1
FREE R-VALUE
MAD
36.60
0.90
1.11
3.4
44.85
0
3283
0
0
3283
0.005
3377
1.188
4604
11.482
1132
0.045
538
0.006
552
0.3994
0.3201
3.7405
34
641
17.4
0.3216
0.2724
4.2813
154
2964
80.00
0.2579
0.2334
5.3926
195
3768
99.9
0.2854
0.2802
44.85
206
3916
99.00
96.4
3.40
44.85
5MMT
11881
0.999
0.09
0.08
1
13.67
5.3
74.6
0.68
3.40
3.49
3.13
0.834
1
0.5
5.8
refinement
PHENIX
1.9_1692
data reduction
XDS
data scaling
XSCALE
phasing
SHARP
N
Di-or tripeptide:H+ symporter
Inward open PepTSt from Streptococcus thermophilus crystallized in space group P3121
1
N
N
A
LEU
13
A
LEU
13
HELX_P
A
THR
46
A
THR
46
1
AA1
34
A
THR
52
A
THR
52
HELX_P
A
ILE
81
A
ILE
81
1
AA2
30
A
GLY
83
A
GLY
83
HELX_P
A
LEU
104
A
LEU
104
1
AA3
22
A
GLY
107
A
GLY
107
HELX_P
A
LEU
136
A
LEU
136
1
AA4
30
A
ARG
143
A
ARG
143
HELX_P
A
GLY
174
A
GLY
174
1
AA5
32
A
GLY
174
A
GLY
174
HELX_P
A
LEU
201
A
LEU
201
1
AA6
28
A
ASP
202
A
ASP
202
HELX_P
A
ARG
207
A
ARG
207
5
AA7
6
A
GLU
216
A
GLU
216
HELX_P
A
GLY
242
A
GLY
242
1
AA8
27
A
SER
245
A
SER
245
HELX_P
A
TYR
264
A
TYR
264
1
AA9
20
A
SER
276
A
SER
276
HELX_P
A
GLN
301
A
GLN
301
1
AB1
26
A
VAL
304
A
VAL
304
HELX_P
A
VAL
314
A
VAL
314
1
AB2
11
A
PRO
320
A
PRO
320
HELX_P
A
GLN
325
A
GLN
325
5
AB3
6
A
SER
326
A
SER
326
HELX_P
A
THR
344
A
THR
344
1
AB4
19
A
SER
353
A
SER
353
HELX_P
A
GLY
379
A
GLY
379
1
AB5
27
A
PRO
386
A
PRO
386
HELX_P
A
MET
401
A
MET
401
1
AB6
16
A
GLN
422
A
GLN
422
HELX_P
A
VAL
442
A
VAL
442
1
AB7
21
A
THR
443
A
THR
443
HELX_P
A
TYR
445
A
TYR
445
5
AB8
3
A
SER
449
A
SER
449
HELX_P
A
SER
472
A
SER
472
1
AB9
24
TRANSPORT PROTEIN
Integral membrane protein, Major facilitator superfamily transporter (MFS transporter), POT PTR or PepT family, proton-coupled peptide transporter, Transport protein
Q5M4H8_STRT2
UNP
1
1
Q5M4H8
MEDKGKTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADR
IIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAF
IAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNL
VGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFP
VSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGE
MLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLMQ
GVE
1
483
5MMT
1
483
Q5M4H8
A
1
1
483
1
expression tag
ALA
484
5MMT
A
Q5M4H8
UNP
484
1
expression tag
GLU
485
5MMT
A
Q5M4H8
UNP
485
1
expression tag
ASN
486
5MMT
A
Q5M4H8
UNP
486
1
expression tag
LEU
487
5MMT
A
Q5M4H8
UNP
487
1
expression tag
TYR
488
5MMT
A
Q5M4H8
UNP
488
1
expression tag
PHE
489
5MMT
A
Q5M4H8
UNP
489
1
expression tag
GLN
490
5MMT
A
Q5M4H8
UNP
490
152
P 31 2 1