0.013349 0.007707 0.000000 -0.000000 0.015415 0.000000 0.000000 -0.000000 0.004446 0.00000 0.00000 0.00000 Schwab, A. Illarionov, B. Frank, A. Kunfermann, A. Seet, M. Bacher, A. Witschel, M. Fischer, M. Groll, M. Diederich, F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 74.910 74.910 224.930 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cd 2 112.411 CADMIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking K 1 39.098 POTASSIUM ION non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CD N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N K N 185 N N N 186 S C N 187 N C N 188 N O N 189 N C N 190 N C N 191 N C N 192 N C N 193 N O N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N N N 208 S C N 209 N C N 210 N O N 211 N C N 212 N C N 213 N C N 214 N C N 215 N N N 216 N O N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N N N 233 S C N 234 N C N 235 N O N 236 N C N 237 N C N 238 N S N 239 N C N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N N N 253 S C N 254 N C N 255 N O N 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C Y 262 N C N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N N N 276 S C N 277 N C N 278 N O N 279 N C N 280 N C N 281 N C N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N N N 293 S C N 294 N C N 295 N O N 296 N C N 297 N O N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N N N 307 S C N 308 N C N 309 N O N 310 R C N 311 N O N 312 N C N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N N N 324 S C N 325 N C N 326 N O N 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N N Y 332 N C Y 333 N C Y 334 N C Y 335 N C Y 336 N C N 337 N O N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N N N 351 S C N 352 N C N 353 N O N 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C Y 360 N C N 361 N O N 362 N O N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N N N 375 S C N 376 N C N 377 N O N 378 N C N 379 N C N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US ACS Chem. Biol. 1554-8937 12 2132 2138 10.1021/acschembio.7b00004 28686408 Mechanism of Allosteric Inhibition of the Enzyme IspD by Three Different Classes of Ligands. 2017 10.2210/pdb5mrn/pdb pdb_00005mrn 100 1 PIXEL 2012-11-10 DECTRIS PILATUS3 S 6M SINGLE WAVELENGTH M x-ray 1 1.0 1.0 X06SA SLS 1.0 SYNCHROTRON SLS BEAMLINE X06SA Glu258Ala Mutant 25372.158 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplastic 2.7.7.60 1 man polymer 39.098 POTASSIUM ION 2 syn non-polymer 112.411 CADMIUM ION 3 syn non-polymer 18.015 water 86 nat water 4-diphosphocytidyl-2C-methyl-D-erythritol synthase,MEP cytidylyltransferase,AtMEPCT no no MEKSVSVILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIPG KERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEM QTPQVIKPELLKKGFELVKSEGLAVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSEDS MEKSVSVILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLSFAIPG KERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEM QTPQVIKPELLKKGFELVKSEGLAVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSEDS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Mouse-ear cress sample 1 228 ISPD, MCT, MECT, MEPCT, At2g02500, T8K22.20 3702 Arabidopsis thaliana 562 Escherichia coli Biological sequence 1 2.39 48.61 VAPOR DIFFUSION, HANGING DROP 7.5 50 mM HEPES, 50 mM CdSO4, 800 mM KAc 293 citation chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn repository Initial release Database references Data collection Database references Derived calculations Refinement description 1 0 2017-07-19 1 1 2017-08-30 1 2 2024-01-17 _citation.journal_volume _citation.page_first _citation.page_last _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_symmetry Germany German Research Foundation SFB749 The crystal structure of a plant 2C-methyl-D-erythritol 4-phosphate cytidylyltransferase exhibits a distinct quaternary structure compared to bacterial homologues and a possible role in feedback regulation for cytidine monophosphate. Inhibitors of the herbicidal target IspD: allosteric site binding. Arabidopsis thaliana IspD in complex with pentabromo-pseudilin N PDBE Y PDBE 2016-12-23 REL REL K POTASSIUM ION CD CADMIUM ION HOH water 1W77 PDB experimental model K 1 2 K K 401 A K 2 2 K K 402 A CD 3 3 CD CD 403 A CD 4 3 CD CD 404 A CD 5 3 CD CD 405 A HOH 77 4 HOH HOH 501 A HOH 90 4 HOH HOH 502 A HOH 10 4 HOH HOH 503 A HOH 19 4 HOH HOH 504 A HOH 17 4 HOH HOH 505 A HOH 64 4 HOH HOH 506 A HOH 73 4 HOH HOH 507 A HOH 59 4 HOH HOH 508 A HOH 61 4 HOH HOH 509 A HOH 86 4 HOH HOH 510 A HOH 85 4 HOH HOH 511 A HOH 27 4 HOH HOH 512 A HOH 20 4 HOH HOH 513 A HOH 34 4 HOH HOH 514 A HOH 78 4 HOH HOH 515 A HOH 16 4 HOH HOH 516 A HOH 21 4 HOH HOH 517 A HOH 75 4 HOH HOH 518 A HOH 76 4 HOH HOH 519 A HOH 7 4 HOH HOH 520 A HOH 84 4 HOH HOH 521 A HOH 42 4 HOH HOH 522 A HOH 9 4 HOH HOH 523 A HOH 13 4 HOH HOH 524 A HOH 58 4 HOH HOH 525 A HOH 11 4 HOH HOH 526 A HOH 74 4 HOH HOH 527 A HOH 35 4 HOH HOH 528 A HOH 8 4 HOH HOH 529 A HOH 33 4 HOH HOH 530 A HOH 23 4 HOH HOH 531 A HOH 32 4 HOH HOH 532 A HOH 31 4 HOH HOH 533 A HOH 41 4 HOH HOH 534 A HOH 44 4 HOH HOH 535 A HOH 67 4 HOH HOH 536 A HOH 37 4 HOH HOH 537 A HOH 43 4 HOH HOH 538 A HOH 91 4 HOH HOH 539 A HOH 53 4 HOH HOH 540 A HOH 62 4 HOH HOH 541 A HOH 72 4 HOH HOH 542 A HOH 55 4 HOH HOH 543 A HOH 45 4 HOH HOH 544 A HOH 51 4 HOH HOH 545 A HOH 89 4 HOH HOH 546 A HOH 30 4 HOH HOH 547 A HOH 25 4 HOH HOH 548 A HOH 54 4 HOH HOH 549 A HOH 60 4 HOH HOH 550 A HOH 52 4 HOH HOH 551 A HOH 49 4 HOH HOH 552 A HOH 15 4 HOH HOH 553 A HOH 80 4 HOH HOH 554 A HOH 29 4 HOH HOH 555 A HOH 81 4 HOH HOH 556 A HOH 39 4 HOH HOH 557 A HOH 12 4 HOH HOH 558 A HOH 66 4 HOH HOH 559 A HOH 50 4 HOH HOH 560 A HOH 26 4 HOH HOH 561 A HOH 48 4 HOH HOH 562 A HOH 65 4 HOH HOH 563 A HOH 36 4 HOH HOH 564 A HOH 63 4 HOH HOH 565 A HOH 79 4 HOH HOH 566 A HOH 22 4 HOH HOH 567 A HOH 69 4 HOH HOH 568 A HOH 14 4 HOH HOH 569 A HOH 87 4 HOH HOH 570 A HOH 56 4 HOH HOH 571 A HOH 88 4 HOH HOH 572 A HOH 6 4 HOH HOH 573 A HOH 18 4 HOH HOH 574 A HOH 57 4 HOH HOH 575 A HOH 38 4 HOH HOH 576 A HOH 70 4 HOH HOH 577 A HOH 46 4 HOH HOH 578 A HOH 24 4 HOH HOH 579 A HOH 28 4 HOH HOH 580 A HOH 40 4 HOH HOH 581 A HOH 83 4 HOH HOH 582 A HOH 68 4 HOH HOH 583 A HOH 82 4 HOH HOH 584 A HOH 47 4 HOH HOH 585 A HOH 71 4 HOH HOH 586 A n 1 75 A n 2 76 A LYS 77 n 3 LYS 77 A SER 78 n 4 SER 78 A VAL 79 n 5 VAL 79 A SER 80 n 6 SER 80 A VAL 81 n 7 VAL 81 A ILE 82 n 8 ILE 82 A LEU 83 n 9 LEU 83 A LEU 84 n 10 LEU 84 A ALA 85 n 11 ALA 85 A GLY 86 n 12 GLY 86 A n 13 87 A n 14 88 A n 15 89 A n 16 90 A n 17 91 A n 18 92 A n 19 93 A n 20 94 A n 21 95 A MET 96 n 22 MET 96 A PRO 97 n 23 PRO 97 A LYS 98 n 24 LYS 98 A GLN 99 n 25 GLN 99 A TYR 100 n 26 TYR 100 A ILE 101 n 27 ILE 101 A PRO 102 n 28 PRO 102 A LEU 103 n 29 LEU 103 A LEU 104 n 30 LEU 104 A GLY 105 n 31 GLY 105 A GLN 106 n 32 GLN 106 A PRO 107 n 33 PRO 107 A ILE 108 n 34 ILE 108 A ALA 109 n 35 ALA 109 A LEU 110 n 36 LEU 110 A TYR 111 n 37 TYR 111 A SER 112 n 38 SER 112 A PHE 113 n 39 PHE 113 A PHE 114 n 40 PHE 114 A THR 115 n 41 THR 115 A PHE 116 n 42 PHE 116 A SER 117 n 43 SER 117 A ARG 118 n 44 ARG 118 A MET 119 n 45 MET 119 A PRO 120 n 46 PRO 120 A GLU 121 n 47 GLU 121 A VAL 122 n 48 VAL 122 A LYS 123 n 49 LYS 123 A GLU 124 n 50 GLU 124 A ILE 125 n 51 ILE 125 A VAL 126 n 52 VAL 126 A VAL 127 n 53 VAL 127 A VAL 128 n 54 VAL 128 A CYS 129 n 55 CYS 129 A ASP 130 n 56 ASP 130 A PRO 131 n 57 PRO 131 A PHE 132 n 58 PHE 132 A PHE 133 n 59 PHE 133 A ARG 134 n 60 ARG 134 A ASP 135 n 61 ASP 135 A ILE 136 n 62 ILE 136 A PHE 137 n 63 PHE 137 A GLU 138 n 64 GLU 138 A GLU 139 n 65 GLU 139 A TYR 140 n 66 TYR 140 A GLU 141 n 67 GLU 141 A GLU 142 n 68 GLU 142 A SER 143 n 69 SER 143 A ILE 144 n 70 ILE 144 A ASP 145 n 71 ASP 145 A VAL 146 n 72 VAL 146 A ASP 147 n 73 ASP 147 A LEU 148 n 74 LEU 148 A SER 149 n 75 SER 149 A PHE 150 n 76 PHE 150 A ALA 151 n 77 ALA 151 A ILE 152 n 78 ILE 152 A PRO 153 n 79 PRO 153 A GLY 154 n 80 GLY 154 A LYS 155 n 81 LYS 155 A GLU 156 n 82 GLU 156 A ARG 157 n 83 ARG 157 A GLN 158 n 84 GLN 158 A ASP 159 n 85 ASP 159 A SER 160 n 86 SER 160 A VAL 161 n 87 VAL 161 A TYR 162 n 88 TYR 162 A SER 163 n 89 SER 163 A GLY 164 n 90 GLY 164 A LEU 165 n 91 LEU 165 A GLN 166 n 92 GLN 166 A GLU 167 n 93 GLU 167 A ILE 168 n 94 ILE 168 A ASP 169 n 95 ASP 169 A VAL 170 n 96 VAL 170 A ASN 171 n 97 ASN 171 A SER 172 n 98 SER 172 A GLU 173 n 99 GLU 173 A LEU 174 n 100 LEU 174 A VAL 175 n 101 VAL 175 A CYS 176 n 102 CYS 176 A ILE 177 n 103 ILE 177 A HIS 178 n 104 HIS 178 A ASP 179 n 105 ASP 179 A SER 180 n 106 SER 180 A ALA 181 n 107 ALA 181 A ARG 182 n 108 ARG 182 A PRO 183 n 109 PRO 183 A LEU 184 n 110 LEU 184 A VAL 185 n 111 VAL 185 A ASN 186 n 112 ASN 186 A THR 187 n 113 THR 187 A GLU 188 n 114 GLU 188 A ASP 189 n 115 ASP 189 A VAL 190 n 116 VAL 190 A GLU 191 n 117 GLU 191 A LYS 192 n 118 LYS 192 A VAL 193 n 119 VAL 193 A LEU 194 n 120 LEU 194 A LYS 195 n 121 LYS 195 A ASP 196 n 122 ASP 196 A GLY 197 n 123 GLY 197 A SER 198 n 124 SER 198 A ALA 199 n 125 ALA 199 A VAL 200 n 126 VAL 200 A GLY 201 n 127 GLY 201 A ALA 202 n 128 ALA 202 A ALA 203 n 129 ALA 203 A VAL 204 n 130 VAL 204 A LEU 205 n 131 LEU 205 A GLY 206 n 132 GLY 206 A VAL 207 n 133 VAL 207 A PRO 208 n 134 PRO 208 A ALA 209 n 135 ALA 209 A LYS 210 n 136 LYS 210 A ALA 211 n 137 ALA 211 A THR 212 n 138 THR 212 A ILE 213 n 139 ILE 213 A LYS 214 n 140 LYS 214 A GLU 215 n 141 GLU 215 A VAL 216 n 142 VAL 216 A ASN 217 n 143 ASN 217 A SER 218 n 144 SER 218 A ASP 219 n 145 ASP 219 A SER 220 n 146 SER 220 A LEU 221 n 147 LEU 221 A VAL 222 n 148 VAL 222 A VAL 223 n 149 VAL 223 A LYS 224 n 150 LYS 224 A THR 225 n 151 THR 225 A LEU 226 n 152 LEU 226 A ASP 227 n 153 ASP 227 A ARG 228 n 154 ARG 228 A LYS 229 n 155 LYS 229 A THR 230 n 156 THR 230 A LEU 231 n 157 LEU 231 A TRP 232 n 158 TRP 232 A GLU 233 n 159 GLU 233 A MET 234 n 160 MET 234 A GLN 235 n 161 GLN 235 A THR 236 n 162 THR 236 A PRO 237 n 163 PRO 237 A GLN 238 n 164 GLN 238 A VAL 239 n 165 VAL 239 A ILE 240 n 166 ILE 240 A LYS 241 n 167 LYS 241 A PRO 242 n 168 PRO 242 A GLU 243 n 169 GLU 243 A LEU 244 n 170 LEU 244 A LEU 245 n 171 LEU 245 A LYS 246 n 172 LYS 246 A LYS 247 n 173 LYS 247 A GLY 248 n 174 GLY 248 A PHE 249 n 175 PHE 249 A GLU 250 n 176 GLU 250 A LEU 251 n 177 LEU 251 A VAL 252 n 178 VAL 252 A LYS 253 n 179 LYS 253 A SER 254 n 180 SER 254 A GLU 255 n 181 GLU 255 A GLY 256 n 182 GLY 256 A LEU 257 n 183 LEU 257 A ALA 258 n 184 ALA 258 A VAL 259 n 185 VAL 259 A THR 260 n 186 THR 260 A ASP 261 n 187 ASP 261 A ASP 262 n 188 ASP 262 A VAL 263 n 189 VAL 263 A SER 264 n 190 SER 264 A ILE 265 n 191 ILE 265 A VAL 266 n 192 VAL 266 A GLU 267 n 193 GLU 267 A TYR 268 n 194 TYR 268 A LEU 269 n 195 LEU 269 A LYS 270 n 196 LYS 270 A HIS 271 n 197 HIS 271 A PRO 272 n 198 PRO 272 A VAL 273 n 199 VAL 273 A TYR 274 n 200 TYR 274 A VAL 275 n 201 VAL 275 A SER 276 n 202 SER 276 A GLN 277 n 203 GLN 277 A GLY 278 n 204 GLY 278 A SER 279 n 205 SER 279 A TYR 280 n 206 TYR 280 A THR 281 n 207 THR 281 A ASN 282 n 208 ASN 282 A ILE 283 n 209 ILE 283 A LYS 284 n 210 LYS 284 A VAL 285 n 211 VAL 285 A THR 286 n 212 THR 286 A THR 287 n 213 THR 287 A PRO 288 n 214 PRO 288 A ASP 289 n 215 ASP 289 A ASP 290 n 216 ASP 290 A LEU 291 n 217 LEU 291 A LEU 292 n 218 LEU 292 A LEU 293 n 219 LEU 293 A ALA 294 n 220 ALA 294 A GLU 295 n 221 GLU 295 A ARG 296 n 222 ARG 296 A ILE 297 n 223 ILE 297 A LEU 298 n 224 LEU 298 A SER 299 n 225 SER 299 A n 226 300 A n 227 301 A n 228 302 A 1.2625 0.0462 -0.0685 0.0024 -0.0041 0.0995 0.0632 0.0031 0.6242 -0.0011 -0.0080 0.0200 0.1378 -0.0221 -0.0552 0.2184 -0.0278 0.0226 0.0278 -0.0012 0.3236 refined -28.3497 -1.9090 -20.3687 X-RAY DIFFRACTION A 77 A 299 X-RAY DIFFRACTION 1 author_and_software_defined_assembly PISA 2 dimeric 4080 -36 19710 A SER 117 A O SER 43 1_555 A K 402 C K K 1_555 A MET 119 A O MET 45 1_555 98.9 A SER 117 A O SER 43 1_555 A K 402 C K K 1_555 A VAL 122 A O VAL 48 1_555 124.5 A MET 119 A O MET 45 1_555 A K 402 C K K 1_555 A VAL 122 A O VAL 48 1_555 81.0 A SER 117 A O SER 43 1_555 A K 402 C K K 1_555 A ASP 145 A O ASP 71 1_555 89.2 A MET 119 A O MET 45 1_555 A K 402 C K K 1_555 A ASP 145 A O ASP 71 1_555 166.3 A VAL 122 A O VAL 48 1_555 A K 402 C K K 1_555 A ASP 145 A O ASP 71 1_555 85.3 A GLU 121 A OE1 GLU 47 1_555 A CD 405 F CD CD 1_555 A GLU 121 A OE2 GLU 47 1_555 53.8 A GLU 121 A OE1 GLU 47 1_555 A CD 405 F CD CD 1_555 A GLU 191 A OE1 GLU 117 1_555 92.0 A GLU 121 A OE2 GLU 47 1_555 A CD 405 F CD CD 1_555 A GLU 191 A OE1 GLU 117 1_555 83.2 A GLU 121 A OE1 GLU 47 1_555 A CD 405 F CD CD 1_555 A GLU 191 A OE2 GLU 117 1_555 96.5 A GLU 121 A OE2 GLU 47 1_555 A CD 405 F CD CD 1_555 A GLU 191 A OE2 GLU 117 1_555 127.3 A GLU 191 A OE1 GLU 117 1_555 A CD 405 F CD CD 1_555 A GLU 191 A OE2 GLU 117 1_555 52.2 A GLU 121 A OE1 GLU 47 1_555 A CD 405 F CD CD 1_555 A HIS 271 A ND1 HIS 197 1_555 64.9 A GLU 121 A OE2 GLU 47 1_555 A CD 405 F CD CD 1_555 A HIS 271 A ND1 HIS 197 1_555 37.6 A GLU 191 A OE1 GLU 117 1_555 A CD 405 F CD CD 1_555 A HIS 271 A ND1 HIS 197 1_555 45.6 A GLU 191 A OE2 GLU 117 1_555 A CD 405 F CD CD 1_555 A HIS 271 A ND1 HIS 197 1_555 92.9 A GLU 121 A OE1 GLU 47 1_555 A CD 405 F CD CD 1_555 A HOH 580 G O HOH 1_555 103.1 A GLU 121 A OE2 GLU 47 1_555 A CD 405 F CD CD 1_555 A HOH 580 G O HOH 1_555 119.5 A GLU 191 A OE1 GLU 117 1_555 A CD 405 F CD CD 1_555 A HOH 580 G O HOH 1_555 157.2 A GLU 191 A OE2 GLU 117 1_555 A CD 405 F CD CD 1_555 A HOH 580 G O HOH 1_555 108.4 A HIS 271 A ND1 HIS 197 1_555 A CD 405 F CD CD 1_555 A HOH 580 G O HOH 1_555 157.1 A GLU 138 A OE1 GLU 64 1_555 A CD 403 D CD CD 1_555 A GLU 141 A OE1 GLU 67 1_555 83.7 A GLU 138 A OE1 GLU 64 1_555 A CD 403 D CD CD 1_555 A ASP 169 A OD1 ASP 95 1_555 141.3 A GLU 141 A OE1 GLU 67 1_555 A CD 403 D CD CD 1_555 A ASP 169 A OD1 ASP 95 1_555 81.7 A GLU 138 A OE1 GLU 64 1_555 A CD 403 D CD CD 1_555 A ASP 169 A OD2 ASP 95 1_555 140.4 A GLU 141 A OE1 GLU 67 1_555 A CD 403 D CD CD 1_555 A ASP 169 A OD2 ASP 95 1_555 75.7 A ASP 169 A OD1 ASP 95 1_555 A CD 403 D CD CD 1_555 A ASP 169 A OD2 ASP 95 1_555 6.2 A GLU 138 A OE1 GLU 64 1_555 A CD 403 D CD CD 1_555 A HOH 563 G O HOH 1_555 98.1 A GLU 141 A OE1 GLU 67 1_555 A CD 403 D CD CD 1_555 A HOH 563 G O HOH 1_555 102.7 A ASP 169 A OD1 ASP 95 1_555 A CD 403 D CD CD 1_555 A HOH 563 G O HOH 1_555 51.4 A ASP 169 A OD2 ASP 95 1_555 A CD 403 D CD CD 1_555 A HOH 563 G O HOH 1_555 55.6 A GLU 167 A OE1 GLU 93 1_555 A CD 404 E CD CD 5_555 A GLU 167 A OE2 GLU 93 1_555 62.1 A GLU 167 A OE1 GLU 93 1_555 A CD 404 E CD CD 5_555 A HOH 540 G O HOH 1_555 82.9 A GLU 167 A OE2 GLU 93 1_555 A CD 404 E CD CD 5_555 A HOH 540 G O HOH 1_555 130.4 A GLU 167 A OE1 GLU 93 1_555 A CD 404 E CD CD 5_555 A HOH 581 G O HOH 5_555 140.6 A GLU 167 A OE2 GLU 93 1_555 A CD 404 E CD CD 5_555 A HOH 581 G O HOH 5_555 114.7 A HOH 540 G O HOH 1_555 A CD 404 E CD CD 5_555 A HOH 581 G O HOH 5_555 70.9 A THR 286 A OG1 THR 212 1_555 A K 401 B K K 1_555 A ASP 290 A OD2 ASP 216 1_555 55.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 18_444 -x-2/3,-x+y-1/3,-z-1/3 crystal symmetry operation -37.4550000000 -21.6246543325 -74.9766666667 A O SER 149 A O SER 75 A N VAL 127 A N VAL 53 A O VAL 126 A O VAL 52 A N VAL 81 A N VAL 7 A N LEU 84 A N LEU 10 A O HIS 178 A O HIS 104 A N ILE 177 A N ILE 103 A O GLN 238 A O GLN 164 A O GLN 235 A O GLN 161 A N LEU 205 A N LEU 131 A N VAL 204 A N VAL 130 A O SER 276 A O SER 202 A N GLU 215 A N GLU 141 A O VAL 223 A O VAL 149 1 A HOH 586 G HOH 1 A MET 75 A MET 1 1 Y 1 A GLU 76 A GLU 2 1 Y 1 A GLY 87 A GLY 13 1 Y 1 A GLN 88 A GLN 14 1 Y 1 A GLY 89 A GLY 15 1 Y 1 A LYS 90 A LYS 16 1 Y 1 A ARG 91 A ARG 17 1 Y 1 A MET 92 A MET 18 1 Y 1 A LYS 93 A LYS 19 1 Y 1 A MET 94 A MET 20 1 Y 1 A SER 95 A SER 21 1 Y 1 A GLU 300 A GLU 226 1 Y 1 A ASP 301 A ASP 227 1 Y 1 A SER 302 A SER 228 1 Y 1 7.40 0.90 118.30 125.70 A A A CB CG OD2 ASP ASP ASP 169 169 169 N 1 A A OD1 OD1 ASP ASP 147 147 2.19 1_555 5_555 1 A ALA 85 -142.42 36.85 1 A ASP 145 -98.70 48.79 1 A GLN 235 -112.27 -160.77 1 A THR 260 -93.34 -65.00 1 A THR 286 -126.35 -51.82 65.392 0.15 0.08 0.00 0.15 0.00 -0.50 0.964 0.948 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.23824 0.20430 0.20629 2.00 15.00 838 15922 5.0 99.32 12.915 0.152 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 2.186 0.165 0.80 0.80 1.20 1W77 2.00 15.00 86 1762 5 0 1671 0.008 0.019 1700 0.002 0.020 1676 1.315 1.996 2308 0.887 3.000 3884 5.659 5.000 212 32.703 25.588 68 16.819 15.000 309 8.096 15.000 6 0.068 0.200 278 0.005 0.021 1858 0.001 0.020 328 3.561 4.487 854 3.549 4.484 853 4.577 6.684 1064 4.575 6.689 1065 2.660 5.065 845 2.659 5.066 845 3.057 7.386 1244 5.515 55.151 1870 5.223 55.027 1861 1.060 3.000 3373 31.006 5.000 49 9.155 5.000 3389 0.380 0.295 2.051 60 1133 20 99.25 2.0 50 5MRN 16809 0.033 1 33.8 8.1 99.6 0.355 2.0 2.1 6.2 1 99.3 refinement REFMAC 5.8.0155 data reduction XDS data scaling XSCALE phasing REFMAC N Arabidopsis thaliana IspD Glu258Ala Mutant 1 N N 2 N N 2 N N 3 N N 3 N N 3 N N 4 N N A PRO 107 A PRO 33 HELX_P A ARG 118 A ARG 44 1 AA1 12 A ASP 130 A ASP 56 HELX_P A PHE 132 A PHE 58 5 AA2 3 A PHE 133 A PHE 59 HELX_P A GLU 139 A GLU 65 1 AA3 7 A GLU 156 A GLU 82 HELX_P A GLN 166 A GLN 92 1 AA4 11 A ASN 186 A ASN 112 HELX_P A GLY 201 A GLY 127 1 AA5 16 A LYS 241 A LYS 167 HELX_P A GLU 255 A GLU 181 1 AA6 15 A ASP 261 A ASP 187 HELX_P A LEU 269 A LEU 195 1 AA7 9 A THR 287 A THR 213 HELX_P A LEU 298 A LEU 224 1 AA8 12 metalc 2.944 A SER 117 A O SER 43 1_555 A K 402 C K K 1_555 metalc 2.674 A MET 119 A O MET 45 1_555 A K 402 C K K 1_555 metalc 2.564 A GLU 121 A OE1 GLU 47 1_555 A CD 405 F CD CD 1_555 metalc 2.288 A GLU 121 A OE2 GLU 47 1_555 A CD 405 F CD CD 1_555 metalc 3.213 A VAL 122 A O VAL 48 1_555 A K 402 C K K 1_555 metalc 2.106 A GLU 138 A OE1 GLU 64 1_555 A CD 403 D CD CD 1_555 metalc 2.192 A GLU 141 A OE1 GLU 67 1_555 A CD 403 D CD CD 1_555 metalc 3.136 A ASP 145 A O ASP 71 1_555 A K 402 C K K 1_555 metalc 2.007 A GLU 167 A OE1 GLU 93 1_555 A CD 404 E CD CD 5_555 metalc 2.194 A GLU 167 A OE2 GLU 93 1_555 A CD 404 E CD CD 5_555 metalc 2.383 A ASP 169 A OD1 ASP 95 1_555 A CD 403 D CD CD 5_555 metalc 2.094 A ASP 169 A OD2 ASP 95 1_555 A CD 403 D CD CD 5_555 metalc 2.677 A GLU 191 A OE1 GLU 117 1_555 A CD 405 F CD CD 1_555 metalc 2.187 A GLU 191 A OE2 GLU 117 1_555 A CD 405 F CD CD 1_555 metalc 2.289 A HIS 271 A ND1 HIS 197 1_555 A CD 405 F CD CD 3_445 metalc 3.082 A THR 286 A OG1 THR 212 1_555 A K 401 B K K 1_555 metalc 2.973 A ASP 290 A OD2 ASP 216 1_555 A K 401 B K K 1_555 metalc 2.594 A CD 403 D CD CD 1_555 A HOH 563 G O HOH 1_555 metalc 2.018 A CD 404 E CD CD 1_555 A HOH 540 G O HOH 1_555 metalc 1.961 A CD 404 E CD CD 1_555 A HOH 581 G O HOH 5_555 metalc 2.433 A CD 405 F CD CD 1_555 A HOH 580 G O HOH 1_555 TRANSFERASE herbicide, anti-infectives, drug discovery, mutant, transferase A THR 236 A THR 162 1 A PRO 237 A PRO 163 5.67 ISPD_ARATH UNP 1 76 P69834 EKSVSVILLAGGQGKRMKMSMPKQYIPLLGQPIALYSFFTFSRMPEVKEIVVVCDPFFRDIFEEYEESIDVDLRFAIPGK ERQDSVYSGLQEIDVNSELVCIHDSARPLVNTEDVEKVLKDGSAVGAAVLGVPAKATIKEVNSDSLVVKTLDRKTLWEMQ TPQVIKPELLKKGFELVKSEGLEVTDDVSIVEYLKHPVYVSQGSYTNIKVTTPDDLLLAERILSEDS 76 302 5MRN 76 302 P69834 A 1 2 228 1 initiating methionine MET 75 5MRN A P69834 UNP 1 1 ARG conflict SER 149 5MRN A P69834 UNP 149 75 1 GLU engineered mutation ALA 258 5MRN A P69834 UNP 258 184 7 2 parallel parallel parallel anti-parallel anti-parallel parallel anti-parallel A ASP 147 A ASP 73 A ALA 151 A ALA 77 A VAL 122 A VAL 48 A VAL 128 A VAL 54 A VAL 79 A VAL 5 A LEU 84 A LEU 10 A LEU 174 A LEU 100 A ASP 179 A ASP 105 A TRP 232 A TRP 158 A ILE 240 A ILE 166 A ALA 202 A ALA 128 A PRO 208 A PRO 134 A TYR 274 A TYR 200 A GLN 277 A GLN 203 A LYS 214 A LYS 140 A VAL 216 A VAL 142 A VAL 222 A VAL 148 A THR 225 A THR 151 binding site for residue K A 401 A K 401 Software 2 binding site for residue K A 402 A K 402 Software 4 binding site for residue CD A 403 A CD 403 Software 5 binding site for residue CD A 404 A CD 404 Software 6 binding site for residue CD A 405 A CD 405 Software 4 A THR 286 A THR 212 2 1_555 A ASP 290 A ASP 216 2 1_555 A SER 117 A SER 43 4 1_555 A MET 119 A MET 45 4 1_555 A VAL 122 A VAL 48 4 1_555 A ASP 145 A ASP 71 4 1_555 A GLU 138 A GLU 64 5 1_555 A GLU 141 A GLU 67 5 1_555 A ASP 169 A ASP 95 5 5_555 A HOH 501 G HOH 5 5_555 A HOH 563 G HOH 5 1_555 A GLU 167 A GLU 93 6 1_555 A GLU 167 A GLU 93 6 5_555 A HOH 540 G HOH 6 5_555 A HOH 540 G HOH 6 1_555 A HOH 581 G HOH 6 5_555 A HOH 581 G HOH 6 1_555 A GLU 121 A GLU 47 4 1_555 A GLU 191 A GLU 117 4 1_555 A HIS 271 A HIS 197 4 2_455 A HOH 580 G HOH 4 1_555 155 H 3 2