0.008979 0.005184 0.000000 0.000000 0.010369 0.000000 0.000000 0.000000 0.008030 0.00000 0.00000 0.00000 Ticha, A. Stanchev, S. Vinothkumar, K.R. Mikles, D.C. Pachl, P. Svehlova, K. Nguyen, M.T.N. Verhelst, S.H.L. Johnson, D. Bachovchin, D. Lepsik, M. Majer, P. Strisovsky, K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 18 90.00 90.00 120.00 111.365 111.365 124.539 C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C15 H30 O6 306.395 n nonyl beta-D-glucopyranoside Beta-NONYLGLUCOSIDE; nonyl beta-D-glucoside; nonyl D-glucoside; nonyl glucoside D-saccharide Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking C13 H20 N2 O2 236.310 (2~{R},3~{S})-3-azanyl-~{N}-[(2,5-dimethylphenyl)methyl]-2-oxidanyl-butanamide non-polymer N 1 N C N 2 N O N 3 N C N 4 N H N 5 N H N 6 N H N 7 N H N 8 N N N 9 S C N 10 N C N 11 N O N 12 N C N 13 N O N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N N N 22 S C N 23 N C N 24 N O N 25 N C N 26 N C N 27 N C N 28 N N N 29 N C N 30 N N N 31 N N N 32 N O N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N N N 49 S C N 50 N C N 51 N O N 52 N C N 53 N C N 54 N O N 55 N N N 56 N O N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N N N 66 S C N 67 N C N 68 N O N 69 N C N 70 N C N 71 N O N 72 N O N 73 N O N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 R C N 82 R C N 83 S C N 84 S C N 85 R C N 86 N C N 87 N C N 88 N C N 89 N C N 90 N C N 91 N C N 92 N C N 93 N C N 94 N C N 95 N C N 96 N O N 97 N O N 98 N O N 99 N O N 100 N O N 101 N O N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N CL N 133 N N N 134 R C N 135 N C N 136 N O N 137 N C N 138 N S N 139 N O N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N N N 148 S C N 149 N C N 150 N O N 151 N C N 152 N C N 153 N C N 154 N O N 155 N N N 156 N O N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N N N 168 S C N 169 N C N 170 N O N 171 N C N 172 N C N 173 N C N 174 N O N 175 N O N 176 N O N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N N N 187 N C N 188 N C N 189 N O N 190 N O N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N N N 197 S C N 198 N C N 199 N O N 200 N C Y 201 N C Y 202 N N Y 203 N C Y 204 N C Y 205 N N N 206 N O N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N O N 218 N H N 219 N H N 220 N N N 221 S C N 222 N C N 223 N O N 224 S C N 225 N C N 226 N C N 227 N C N 228 N O N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N N N 243 S C N 244 N C N 245 N O N 246 N C N 247 N C N 248 N C N 249 N C N 250 N O N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N N N 265 S C N 266 N C N 267 N O N 268 N C N 269 N C N 270 N C N 271 N C N 272 N N N 273 N O N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N N N 290 S C N 291 N C N 292 N O N 293 N C N 294 N C N 295 N S N 296 N C N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N N N 310 S C N 311 N C N 312 N O N 313 N C Y 314 N C Y 315 N C Y 316 N C Y 317 N C Y 318 N C Y 319 N C N 320 N O N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N N N 333 S C N 334 N C N 335 N O N 336 N C N 337 N C N 338 N C N 339 N O N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C N 354 N O N 355 N O N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N N N 364 S C N 365 N C N 366 N O N 367 R C N 368 N O N 369 N C N 370 N O N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 S C N 382 N C N 383 N O N 384 N C Y 385 N C Y 386 N C Y 387 N C Y 388 N N Y 389 N C Y 390 N C Y 391 N C Y 392 N C Y 393 N C N 394 N O N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N N N 408 S C N 409 N C N 410 N O N 411 N C Y 412 N C Y 413 N C Y 414 N C Y 415 N C Y 416 N C Y 417 N C N 418 N O N 419 N O N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N N N 432 S C N 433 N C N 434 N O N 435 N C N 436 N C N 437 N C N 438 N O N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N O N 451 N C N 452 R C N 453 N O N 454 S C N 455 N C N 456 N N N 457 N N N 458 N C Y 459 N C Y 460 N C Y 461 N C N 462 N C Y 463 N C Y 464 N C Y 465 N C N 466 N C N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N doub N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N doub N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N doub N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N doub N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing Y 197 N sing Y 198 N doub Y 199 N doub N 200 N sing Y 201 N sing N 202 N sing Y 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N doub N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N doub N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing Y 305 N doub Y 306 N sing Y 307 N sing N 308 N sing Y 309 N doub N 310 N sing Y 311 N doub N 312 N sing Y 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N doub N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N doub N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N doub N 370 N sing N 371 N sing N 372 N sing N 373 N sing Y 374 N doub Y 375 N sing Y 376 N sing N 377 N sing Y 378 N doub Y 379 N sing Y 380 N sing N 381 N sing Y 382 N sing Y 383 N doub N 384 N sing Y 385 N doub N 386 N sing Y 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N doub N 398 N sing N 399 N sing N 400 N sing N 401 N sing Y 402 N doub Y 403 N sing Y 404 N sing N 405 N sing Y 406 N doub N 407 N sing Y 408 N doub N 409 N sing Y 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N doub N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing Y 434 N doub Y 435 N sing Y 436 N sing Y 437 N doub Y 438 N doub Y 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N doub N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing US Cell Chem Biol 2451-9456 24 1523 1536.e4 10.1016/j.chembiol.2017.09.007 29107700 General and Modular Strategy for Designing Potent, Selective, and Pharmacologically Compliant Inhibitors of Rhomboid Proteases. 2017 10.2210/pdb5mtf/pdb pdb_00005mtf 100 1 PIXEL 2016-04-20 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 0.918408 1.0 14.1 BESSY 0.918408 SYNCHROTRON BESSY BEAMLINE 14.1 21513.568 Rhomboid protease GlpG 3.4.21.105 1 man polymer 814.013 inhibitor 1 syn polymer 35.453 CHLORIDE ION 2 syn non-polymer 306.395 nonyl beta-D-glucopyranoside 5 man non-polymer 18.015 water 68 nat water Intramembrane serine protease no no AALRERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVE KRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFG MSMANGAHIAGLAVGLAMAFVDSLNARKRK AALRERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVE KRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFG MSMANGAHIAGLAVGLAMAFVDSLNARKRK A polypeptide(L) no yes (ACE)RVRH(W6Q) XRVRHX C polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n S88 / ExPEC sample 1 190 glpG, ECS88_3813 585035 Escherichia coli O45:K1 (strain S88 / ExPEC) 469008 Escherichia coli BL21(DE3) C43 Biological sequence pET25 1 3.53 65.15 VAPOR DIFFUSION, HANGING DROP 3M NH4Cl, 25mM Bis Tris pH7 298 citation entity_src_gen chem_comp entity pdbx_chem_comp_identifier pdbx_entity_nonpoly struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Database references Source and taxonomy Data collection Derived calculations Structure summary Data collection Database references Refinement description Structure summary 1 0 2017-11-15 1 1 2018-01-03 1 2 2018-01-24 1 3 2020-07-29 1 4 2024-01-17 _citation.journal_volume _citation.page_first _citation.page_last _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.type _entity.pdbx_description _pdbx_entity_nonpoly.name _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession b-nonylglucoside N PDBE Y PDBE 2017-01-09 REL REL CL CHLORIDE ION BNG nonyl beta-D-glucopyranoside HOH water 32630 synthetic construct sample 1 6 4QNZ PDB experimental model CL 302 3 CL CL 301 A CL 303 3 CL CL 302 A BNG 304 4 BNG BNG 303 A BNG 305 4 BNG BNG 304 A BNG 306 4 BNG BNG 305 A BNG 307 4 BNG BNG 306 A BNG 308 4 BNG BNG 307 A HOH 401 5 HOH HOH 401 A HOH 402 5 HOH HOH 402 A HOH 403 5 HOH HOH 403 A HOH 404 5 HOH HOH 404 A HOH 405 5 HOH HOH 405 A HOH 406 5 HOH HOH 406 A HOH 407 5 HOH HOH 407 A HOH 408 5 HOH HOH 408 A HOH 409 5 HOH HOH 409 A HOH 410 5 HOH HOH 410 A HOH 411 5 HOH HOH 411 A HOH 412 5 HOH HOH 412 A HOH 413 5 HOH HOH 413 A HOH 414 5 HOH HOH 414 A HOH 415 5 HOH HOH 415 A HOH 416 5 HOH HOH 416 A HOH 417 5 HOH HOH 417 A HOH 418 5 HOH HOH 418 A HOH 419 5 HOH HOH 419 A HOH 420 5 HOH HOH 420 A HOH 421 5 HOH HOH 421 A HOH 422 5 HOH HOH 422 A HOH 423 5 HOH HOH 423 A HOH 424 5 HOH HOH 424 A HOH 425 5 HOH HOH 425 A HOH 426 5 HOH HOH 426 A HOH 427 5 HOH HOH 427 A HOH 428 5 HOH HOH 428 A HOH 429 5 HOH HOH 429 A HOH 430 5 HOH HOH 430 A HOH 431 5 HOH HOH 431 A HOH 432 5 HOH HOH 432 A HOH 433 5 HOH HOH 433 A HOH 434 5 HOH HOH 434 A HOH 435 5 HOH HOH 435 A HOH 436 5 HOH HOH 436 A HOH 437 5 HOH HOH 437 A HOH 438 5 HOH HOH 438 A HOH 439 5 HOH HOH 439 A HOH 440 5 HOH HOH 440 A HOH 441 5 HOH HOH 441 A HOH 442 5 HOH HOH 442 A HOH 443 5 HOH HOH 443 A HOH 444 5 HOH HOH 444 A HOH 445 5 HOH HOH 445 A HOH 446 5 HOH HOH 446 A HOH 447 5 HOH HOH 447 A HOH 448 5 HOH HOH 448 A HOH 449 5 HOH HOH 449 A HOH 450 5 HOH HOH 450 A HOH 451 5 HOH HOH 451 A HOH 452 5 HOH HOH 452 A HOH 453 5 HOH HOH 453 A HOH 454 5 HOH HOH 454 A HOH 455 5 HOH HOH 455 A HOH 456 5 HOH HOH 456 A HOH 457 5 HOH HOH 457 A HOH 458 5 HOH HOH 458 A HOH 459 5 HOH HOH 459 A HOH 460 5 HOH HOH 460 A HOH 461 5 HOH HOH 461 A HOH 462 5 HOH HOH 462 A HOH 101 5 HOH HOH 101 C HOH 102 5 HOH HOH 102 C HOH 103 5 HOH HOH 103 C HOH 104 5 HOH HOH 104 C HOH 105 5 HOH HOH 105 C HOH 106 5 HOH HOH 106 C 0.505 44.970 2.140 n 1 87 A n 2 88 A n 3 89 A n 4 90 A GLU 91 n 5 GLU 91 A ARG 92 n 6 ARG 92 A ALA 93 n 7 ALA 93 A GLY 94 n 8 GLY 94 A PRO 95 n 9 PRO 95 A VAL 96 n 10 VAL 96 A THR 97 n 11 THR 97 A TRP 98 n 12 TRP 98 A VAL 99 n 13 VAL 99 A MET 100 n 14 MET 100 A MET 101 n 15 MET 101 A ILE 102 n 16 ILE 102 A ALA 103 n 17 ALA 103 A CYS 104 n 18 CYS 104 A VAL 105 n 19 VAL 105 A VAL 106 n 20 VAL 106 A VAL 107 n 21 VAL 107 A PHE 108 n 22 PHE 108 A ILE 109 n 23 ILE 109 A ALA 110 n 24 ALA 110 A MET 111 n 25 MET 111 A GLN 112 n 26 GLN 112 A ILE 113 n 27 ILE 113 A LEU 114 n 28 LEU 114 A GLY 115 n 29 GLY 115 A ASP 116 n 30 ASP 116 A GLN 117 n 31 GLN 117 A GLU 118 n 32 GLU 118 A VAL 119 n 33 VAL 119 A MET 120 n 34 MET 120 A LEU 121 n 35 LEU 121 A TRP 122 n 36 TRP 122 A LEU 123 n 37 LEU 123 A ALA 124 n 38 ALA 124 A TRP 125 n 39 TRP 125 A PRO 126 n 40 PRO 126 A PHE 127 n 41 PHE 127 A ASP 128 n 42 ASP 128 A PRO 129 n 43 PRO 129 A THR 130 n 44 THR 130 A LEU 131 n 45 LEU 131 A LYS 132 n 46 LYS 132 A PHE 133 n 47 PHE 133 A GLU 134 n 48 GLU 134 A PHE 135 n 49 PHE 135 A TRP 136 n 50 TRP 136 A ARG 137 n 51 ARG 137 A TYR 138 n 52 TYR 138 A PHE 139 n 53 PHE 139 A THR 140 n 54 THR 140 A HIS 141 n 55 HIS 141 A ALA 142 n 56 ALA 142 A LEU 143 n 57 LEU 143 A MET 144 n 58 MET 144 A HIS 145 n 59 HIS 145 A PHE 146 n 60 PHE 146 A SER 147 n 61 SER 147 A LEU 148 n 62 LEU 148 A MET 149 n 63 MET 149 A HIS 150 n 64 HIS 150 A ILE 151 n 65 ILE 151 A LEU 152 n 66 LEU 152 A PHE 153 n 67 PHE 153 A ASN 154 n 68 ASN 154 A LEU 155 n 69 LEU 155 A LEU 156 n 70 LEU 156 A TRP 157 n 71 TRP 157 A TRP 158 n 72 TRP 158 A TRP 159 n 73 TRP 159 A TYR 160 n 74 TYR 160 A LEU 161 n 75 LEU 161 A GLY 162 n 76 GLY 162 A GLY 163 n 77 GLY 163 A ALA 164 n 78 ALA 164 A VAL 165 n 79 VAL 165 A GLU 166 n 80 GLU 166 A LYS 167 n 81 LYS 167 A ARG 168 n 82 ARG 168 A LEU 169 n 83 LEU 169 A GLY 170 n 84 GLY 170 A SER 171 n 85 SER 171 A GLY 172 n 86 GLY 172 A LYS 173 n 87 LYS 173 A LEU 174 n 88 LEU 174 A ILE 175 n 89 ILE 175 A VAL 176 n 90 VAL 176 A ILE 177 n 91 ILE 177 A THR 178 n 92 THR 178 A LEU 179 n 93 LEU 179 A ILE 180 n 94 ILE 180 A SER 181 n 95 SER 181 A ALA 182 n 96 ALA 182 A LEU 183 n 97 LEU 183 A LEU 184 n 98 LEU 184 A SER 185 n 99 SER 185 A GLY 186 n 100 GLY 186 A TYR 187 n 101 TYR 187 A VAL 188 n 102 VAL 188 A GLN 189 n 103 GLN 189 A GLN 190 n 104 GLN 190 A LYS 191 n 105 LYS 191 A PHE 192 n 106 PHE 192 A SER 193 n 107 SER 193 A GLY 194 n 108 GLY 194 A PRO 195 n 109 PRO 195 A TRP 196 n 110 TRP 196 A PHE 197 n 111 PHE 197 A GLY 198 n 112 GLY 198 A GLY 199 n 113 GLY 199 A LEU 200 n 114 LEU 200 A SER 201 n 115 SER 201 A GLY 202 n 116 GLY 202 A VAL 203 n 117 VAL 203 A VAL 204 n 118 VAL 204 A TYR 205 n 119 TYR 205 A ALA 206 n 120 ALA 206 A LEU 207 n 121 LEU 207 A MET 208 n 122 MET 208 A GLY 209 n 123 GLY 209 A TYR 210 n 124 TYR 210 A VAL 211 n 125 VAL 211 A TRP 212 n 126 TRP 212 A LEU 213 n 127 LEU 213 A ARG 214 n 128 ARG 214 A GLY 215 n 129 GLY 215 A GLU 216 n 130 GLU 216 A ARG 217 n 131 ARG 217 A ASP 218 n 132 ASP 218 A PRO 219 n 133 PRO 219 A GLN 220 n 134 GLN 220 A SER 221 n 135 SER 221 A GLY 222 n 136 GLY 222 A ILE 223 n 137 ILE 223 A TYR 224 n 138 TYR 224 A LEU 225 n 139 LEU 225 A GLN 226 n 140 GLN 226 A ARG 227 n 141 ARG 227 A GLY 228 n 142 GLY 228 A LEU 229 n 143 LEU 229 A ILE 230 n 144 ILE 230 A ILE 231 n 145 ILE 231 A PHE 232 n 146 PHE 232 A ALA 233 n 147 ALA 233 A LEU 234 n 148 LEU 234 A ILE 235 n 149 ILE 235 A TRP 236 n 150 TRP 236 A ILE 237 n 151 ILE 237 A VAL 238 n 152 VAL 238 A ALA 239 n 153 ALA 239 A GLY 240 n 154 GLY 240 A TRP 241 n 155 TRP 241 A PHE 242 n 156 PHE 242 A ASP 243 n 157 ASP 243 A LEU 244 n 158 LEU 244 A PHE 245 n 159 PHE 245 A GLY 246 n 160 GLY 246 A MET 247 n 161 MET 247 A SER 248 n 162 SER 248 A MET 249 n 163 MET 249 A ALA 250 n 164 ALA 250 A ASN 251 n 165 ASN 251 A GLY 252 n 166 GLY 252 A ALA 253 n 167 ALA 253 A HIS 254 n 168 HIS 254 A ILE 255 n 169 ILE 255 A ALA 256 n 170 ALA 256 A GLY 257 n 171 GLY 257 A LEU 258 n 172 LEU 258 A ALA 259 n 173 ALA 259 A VAL 260 n 174 VAL 260 A GLY 261 n 175 GLY 261 A LEU 262 n 176 LEU 262 A ALA 263 n 177 ALA 263 A MET 264 n 178 MET 264 A ALA 265 n 179 ALA 265 A PHE 266 n 180 PHE 266 A VAL 267 n 181 VAL 267 A ASP 268 n 182 ASP 268 A SER 269 n 183 SER 269 A LEU 270 n 184 LEU 270 A ASN 271 n 185 ASN 271 A n 186 272 A n 187 273 A n 188 274 A n 189 275 A n 190 276 A ACE 7 n 1 ACE 7 C ARG 8 n 2 ARG 8 C VAL 9 n 3 VAL 9 C ARG 10 n 4 ARG 10 C HIS 11 n 5 HIS 11 C W6Q 12 n 6 W6Q 12 C software_defined_assembly PISA 12 dodecameric 32290 -281 43680 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_555 -y,x-y,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_555 -x+y,-x,z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 4_555 y,x,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 5_555 x-y,-y,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 6_555 -x,-x+y,-z crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 1 A C1 BNG 304 F C1 BNG 1 1 N 1 A C2 BNG 304 F C2 BNG 1 1 N 1 A C3 BNG 304 F C3 BNG 1 1 N 1 A C4 BNG 304 F C4 BNG 1 1 N 1 A C5 BNG 304 F C5 BNG 1 1 N 1 A C6 BNG 304 F C6 BNG 1 1 N 1 A C1' BNG 304 F C1' BNG 1 1 N 1 A C2' BNG 304 F C2' BNG 1 1 N 1 A O1 BNG 304 F O1 BNG 1 1 N 1 A O2 BNG 304 F O2 BNG 1 1 N 1 A O3 BNG 304 F O3 BNG 1 1 N 1 A O4 BNG 304 F O4 BNG 1 1 N 1 A O5 BNG 304 F O5 BNG 1 1 N 1 A O6 BNG 304 F O6 BNG 1 1 N 1 A C1 BNG 305 G C1 BNG 1 1 N 1 A C2 BNG 305 G C2 BNG 1 1 N 1 A C3 BNG 305 G C3 BNG 1 1 N 1 A C4 BNG 305 G C4 BNG 1 1 N 1 A C5 BNG 305 G C5 BNG 1 1 N 1 A C6 BNG 305 G C6 BNG 1 1 N 1 A C1' BNG 305 G C1' BNG 1 1 N 1 A C2' BNG 305 G C2' BNG 1 1 N 1 A O1 BNG 305 G O1 BNG 1 1 N 1 A O2 BNG 305 G O2 BNG 1 1 N 1 A O3 BNG 305 G O3 BNG 1 1 N 1 A O4 BNG 305 G O4 BNG 1 1 N 1 A O5 BNG 305 G O5 BNG 1 1 N 1 A O6 BNG 305 G O6 BNG 1 1 N 1 A C2' BNG 306 H C2' BNG 1 1 N 1 A C3' BNG 306 H C3' BNG 1 1 N 1 A C4' BNG 306 H C4' BNG 1 1 N 1 A C5' BNG 306 H C5' BNG 1 1 N 1 A C6' BNG 306 H C6' BNG 1 1 N 1 A C7' BNG 306 H C7' BNG 1 1 N 1 A C8' BNG 306 H C8' BNG 1 1 N 1 A C9' BNG 306 H C9' BNG 1 1 N 1 A C2' BNG 307 I C2' BNG 1 1 N 1 A C3' BNG 307 I C3' BNG 1 1 N 1 A C4' BNG 307 I C4' BNG 1 1 N 1 A C5' BNG 307 I C5' BNG 1 1 N 1 A C6' BNG 307 I C6' BNG 1 1 N 1 A C7' BNG 307 I C7' BNG 1 1 N 1 A C8' BNG 307 I C8' BNG 1 1 N 1 A C9' BNG 307 I C9' BNG 1 1 N 1 A ALA 87 A ALA 1 1 Y 1 A ALA 88 A ALA 2 1 Y 1 A LEU 89 A LEU 3 1 Y 1 A ARG 90 A ARG 4 1 Y 1 A ALA 272 A ALA 186 1 Y 1 A ARG 273 A ARG 187 1 Y 1 A LYS 274 A LYS 188 1 Y 1 A ARG 275 A ARG 189 1 Y 1 A LYS 276 A LYS 190 1 Y 1 -6.04 0.90 118.30 112.26 A A A CB CG OD2 ASP ASP ASP 116 116 116 N 1 3.26 0.50 120.30 123.56 C C C NE CZ NH1 ARG ARG ARG 10 10 10 N 35.73 0.03000 0.01000 0.00000 0.03000 0.00000 -0.08000 HYDROGENS HAVE BEEN ADDED IN THE RIDING 0.192 0.167 0.169 1.79 44.97 1411 26791 5.000 99.8 4.530 0.066 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.088 0.087 4QNZ 1.79 44.97 68 1636 80 0 1488 37.88 1.787 44.970 5MTF 28202 1 18.6400 5.000 99.8 1.79 1.90 1.860 1 4.95 99.6 refinement REFMAC data extraction PDB_EXTRACT 3.22 data reduction XDS phasing MOLREP N A modular route to novel potent and selective inhibitors of rhomboid intramembrane proteases 1 N N 2 N N 3 N N 3 N N 4 N N 4 N N 4 N N 4 N N 4 N N 5 N N 5 N N A GLY 94 A GLY 8 HELX_P A GLY 115 A GLY 29 1 AA1 22 A GLY 115 A GLY 29 HELX_P A ALA 124 A ALA 38 1 AA2 10 A ASP 128 A ASP 42 HELX_P A LYS 132 A LYS 46 5 AA3 5 A TRP 136 A TRP 50 HELX_P A HIS 141 A HIS 55 1 AA4 6 A ALA 142 A ALA 56 HELX_P A MET 144 A MET 58 5 AA5 3 A SER 147 A SER 61 HELX_P A GLY 170 A GLY 84 1 AA6 24 A GLY 170 A GLY 84 HELX_P A GLY 194 A GLY 108 1 AA7 25 A LEU 200 A LEU 114 HELX_P A ASP 218 A ASP 132 1 AA8 19 A PRO 219 A PRO 133 HELX_P A GLY 222 A GLY 136 5 AA9 4 A GLN 226 A GLN 140 HELX_P A PHE 242 A PHE 156 1 AB1 17 A ALA 250 A ALA 164 HELX_P A LEU 270 A LEU 184 1 AB2 21 covale 1.380 none A SER 201 A OG SER 115 1_555 C W6Q 12 B C7 W6Q 6 1_555 covale 1.352 both C ACE 7 B C ACE 1 1_555 C ARG 8 B N ARG 2 1_555 covale 1.463 one C HIS 11 B C HIS 5 1_555 C W6Q 12 B N1 W6Q 6 1_555 HYDROLASE Rhomboid protease, specificity, inhibition, ketoamide, hydrolase GLPG_ECO45 UNP 1 87 B7MDQ0 AALRERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVE KRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFG MSMANGAHIAGLAVGLAMAFVDSLNARKRK 5MTF PDB 2 1 5MTF 87 276 5MTF 87 276 B7MDQ0 A 1 1 190 7 12 5MTF 7 12 5MTF C 2 1 6 155 H 3 2