0.012220
0.000000
0.000000
0.000000
0.012220
0.000000
0.000000
0.000000
0.009437
0.00000
0.00000
0.00000
Pojer, F.
Kukenshoner, T.
Koide, S.
Hantschel, O.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
81.834
81.834
105.961
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
UK
J. Mol. Biol.
JMOBAK
0070
1089-8638
429
1364
1380
10.1016/j.jmb.2017.03.023
28347651
Selective Targeting of SH2 Domain-Phosphotyrosine Interactions of Src Family Tyrosine Kinases with Monobodies.
2017
100
1
PIXEL
2015-09-14
DECTRIS EIGER X 16M
SINGLE WAVELENGTH
M
x-ray
1
1
1.0
X06SA
SLS
1
SYNCHROTRON
SLS BEAMLINE X06SA
13142.672
Tyrosine-protein kinase Lck
2.7.10.2
1
man
polymer
10137.187
Monobody Mb(Lck_3)
1
nat
polymer
65.409
ZINC ION
2
syn
non-polymer
18.015
water
32
nat
water
Leukocyte C-terminal Src kinase,LSK,Lymphocyte cell-specific protein-tyrosine kinase,Protein YT16,Proto-oncogene Lck,T cell-specific protein-tyrosine kinase,p56-LCK
no
no
GSKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISP
RITFPGLHELVRHYTNASDGLCTRLSRPCQTQKPQK
GSKANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISP
RITFPGLHELVRHYTNASDGLCTRLSRPCQTQKPQK
A
polypeptide(L)
no
no
GSVSSVPTKLEVVAATPTSLLISWDAPAVTVLYYLITYGETGDHWSGHQAFEVPGSKSTATISGLKPGVDYTITVYAHAE
SYGESYSPISINYRT
GSVSSVPTKLEVVAATPTSLLISWDAPAVTVLYYLITYGETGDHWSGHQAFEVPGSKSTATISGLKPGVDYTITVYAHAE
SYGESYSPISINYRT
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
116
LCK
9606
Homo sapiens
562
Escherichia coli
Biological sequence
House mouse
sample
10090
Mus musculus
1
3.81
67.72
VAPOR DIFFUSION, SITTING DROP
6.5
0.1M MES pH6.5, 15 % PEG 20000
291
entity
entity_src_nat
pdbx_entity_src_syn
reflns_shell
repository
Initial release
Database references
Source and taxonomy
Structure summary
Data collection
1
0
2017-04-05
1
1
2017-05-03
1
2
2018-03-07
1
3
2019-10-16
_entity.src_method
N
PDBE
Y
PDBE
2017-01-10
REL
REL
ZN
ZINC ION
HOH
water
ZN
1
3
ZN
ZN
101
B
ZN
2
3
ZN
ZN
102
B
HOH
31
4
HOH
HOH
201
A
HOH
19
4
HOH
HOH
202
A
HOH
18
4
HOH
HOH
203
A
HOH
10
4
HOH
HOH
204
A
HOH
26
4
HOH
HOH
205
A
HOH
24
4
HOH
HOH
206
A
HOH
11
4
HOH
HOH
207
A
HOH
21
4
HOH
HOH
208
A
HOH
13
4
HOH
HOH
209
A
HOH
25
4
HOH
HOH
210
A
HOH
2
4
HOH
HOH
211
A
HOH
7
4
HOH
HOH
212
A
HOH
8
4
HOH
HOH
213
A
HOH
16
4
HOH
HOH
214
A
HOH
27
4
HOH
HOH
215
A
HOH
5
4
HOH
HOH
216
A
HOH
22
4
HOH
HOH
217
A
HOH
32
4
HOH
HOH
201
B
HOH
12
4
HOH
HOH
202
B
HOH
23
4
HOH
HOH
203
B
HOH
6
4
HOH
HOH
204
B
HOH
1
4
HOH
HOH
205
B
HOH
9
4
HOH
HOH
206
B
HOH
3
4
HOH
HOH
207
B
HOH
4
4
HOH
HOH
208
B
HOH
14
4
HOH
HOH
209
B
HOH
28
4
HOH
HOH
210
B
HOH
17
4
HOH
HOH
211
B
HOH
20
4
HOH
HOH
212
B
HOH
15
4
HOH
HOH
213
B
HOH
30
4
HOH
HOH
214
B
HOH
29
4
HOH
HOH
215
B
n
1
1
A
n
2
2
A
n
3
3
A
ALA
4
n
4
ALA
4
A
ASN
5
n
5
ASN
5
A
SER
6
n
6
SER
6
A
LEU
7
n
7
LEU
7
A
GLU
8
n
8
GLU
8
A
PRO
9
n
9
PRO
9
A
GLU
10
n
10
GLU
10
A
PRO
11
n
11
PRO
11
A
TRP
12
n
12
TRP
12
A
PHE
13
n
13
PHE
13
A
PHE
14
n
14
PHE
14
A
LYS
15
n
15
LYS
15
A
ASN
16
n
16
ASN
16
A
LEU
17
n
17
LEU
17
A
SER
18
n
18
SER
18
A
ARG
19
n
19
ARG
19
A
LYS
20
n
20
LYS
20
A
ASP
21
n
21
ASP
21
A
ALA
22
n
22
ALA
22
A
GLU
23
n
23
GLU
23
A
ARG
24
n
24
ARG
24
A
GLN
25
n
25
GLN
25
A
LEU
26
n
26
LEU
26
A
LEU
27
n
27
LEU
27
A
ALA
28
n
28
ALA
28
A
PRO
29
n
29
PRO
29
A
GLY
30
n
30
GLY
30
A
ASN
31
n
31
ASN
31
A
THR
32
n
32
THR
32
A
HIS
33
n
33
HIS
33
A
GLY
34
n
34
GLY
34
A
SER
35
n
35
SER
35
A
PHE
36
n
36
PHE
36
A
LEU
37
n
37
LEU
37
A
ILE
38
n
38
ILE
38
A
ARG
39
n
39
ARG
39
A
GLU
40
n
40
GLU
40
A
SER
41
n
41
SER
41
A
GLU
42
n
42
GLU
42
A
SER
43
n
43
SER
43
A
THR
44
n
44
THR
44
A
ALA
45
n
45
ALA
45
A
GLY
46
n
46
GLY
46
A
SER
47
n
47
SER
47
A
PHE
48
n
48
PHE
48
A
SER
49
n
49
SER
49
A
LEU
50
n
50
LEU
50
A
SER
51
n
51
SER
51
A
VAL
52
n
52
VAL
52
A
ARG
53
n
53
ARG
53
A
ASP
54
n
54
ASP
54
A
PHE
55
n
55
PHE
55
A
ASP
56
n
56
ASP
56
A
GLN
57
n
57
GLN
57
A
ASN
58
n
58
ASN
58
A
GLN
59
n
59
GLN
59
A
GLY
60
n
60
GLY
60
A
GLU
61
n
61
GLU
61
A
VAL
62
n
62
VAL
62
A
VAL
63
n
63
VAL
63
A
LYS
64
n
64
LYS
64
A
HIS
65
n
65
HIS
65
A
TYR
66
n
66
TYR
66
A
LYS
67
n
67
LYS
67
A
ILE
68
n
68
ILE
68
A
ARG
69
n
69
ARG
69
A
ASN
70
n
70
ASN
70
A
LEU
71
n
71
LEU
71
A
ASP
72
n
72
ASP
72
A
ASN
73
n
73
ASN
73
A
GLY
74
n
74
GLY
74
A
GLY
75
n
75
GLY
75
A
PHE
76
n
76
PHE
76
A
TYR
77
n
77
TYR
77
A
ILE
78
n
78
ILE
78
A
SER
79
n
79
SER
79
A
PRO
80
n
80
PRO
80
A
ARG
81
n
81
ARG
81
A
ILE
82
n
82
ILE
82
A
THR
83
n
83
THR
83
A
PHE
84
n
84
PHE
84
A
PRO
85
n
85
PRO
85
A
GLY
86
n
86
GLY
86
A
LEU
87
n
87
LEU
87
A
HIS
88
n
88
HIS
88
A
GLU
89
n
89
GLU
89
A
LEU
90
n
90
LEU
90
A
VAL
91
n
91
VAL
91
A
ARG
92
n
92
ARG
92
A
HIS
93
n
93
HIS
93
A
TYR
94
n
94
TYR
94
A
THR
95
n
95
THR
95
A
ASN
96
n
96
ASN
96
A
ALA
97
n
97
ALA
97
A
SER
98
n
98
SER
98
A
ASP
99
n
99
ASP
99
A
GLY
100
n
100
GLY
100
A
LEU
101
n
101
LEU
101
A
CYS
102
n
102
CYS
102
A
THR
103
n
103
THR
103
A
ARG
104
n
104
ARG
104
A
LEU
105
n
105
LEU
105
A
SER
106
n
106
SER
106
A
ARG
107
n
107
ARG
107
A
PRO
108
n
108
PRO
108
A
CYS
109
n
109
CYS
109
A
GLN
110
n
110
GLN
110
A
THR
111
n
111
THR
111
A
n
112
112
A
n
113
113
A
n
114
114
A
n
115
115
A
n
116
116
A
n
1
1
B
n
2
2
B
n
3
3
B
SER
4
n
4
SER
4
B
SER
5
n
5
SER
5
B
VAL
6
n
6
VAL
6
B
PRO
7
n
7
PRO
7
B
THR
8
n
8
THR
8
B
LYS
9
n
9
LYS
9
B
LEU
10
n
10
LEU
10
B
GLU
11
n
11
GLU
11
B
VAL
12
n
12
VAL
12
B
VAL
13
n
13
VAL
13
B
ALA
14
n
14
ALA
14
B
ALA
15
n
15
ALA
15
B
THR
16
n
16
THR
16
B
PRO
17
n
17
PRO
17
B
THR
18
n
18
THR
18
B
SER
19
n
19
SER
19
B
LEU
20
n
20
LEU
20
B
LEU
21
n
21
LEU
21
B
ILE
22
n
22
ILE
22
B
SER
23
n
23
SER
23
B
TRP
24
n
24
TRP
24
B
ASP
25
n
25
ASP
25
B
ALA
26
n
26
ALA
26
B
PRO
27
n
27
PRO
27
B
ALA
28
n
28
ALA
28
B
VAL
29
n
29
VAL
29
B
THR
30
n
30
THR
30
B
VAL
31
n
31
VAL
31
B
LEU
32
n
32
LEU
32
B
TYR
33
n
33
TYR
33
B
TYR
34
n
34
TYR
34
B
LEU
35
n
35
LEU
35
B
ILE
36
n
36
ILE
36
B
THR
37
n
37
THR
37
B
TYR
38
n
38
TYR
38
B
GLY
39
n
39
GLY
39
B
GLU
40
n
40
GLU
40
B
THR
41
n
41
THR
41
B
GLY
42
n
42
GLY
42
B
ASP
43
n
43
ASP
43
B
HIS
44
n
44
HIS
44
B
TRP
45
n
45
TRP
45
B
SER
46
n
46
SER
46
B
GLY
47
n
47
GLY
47
B
HIS
48
n
48
HIS
48
B
GLN
49
n
49
GLN
49
B
ALA
50
n
50
ALA
50
B
PHE
51
n
51
PHE
51
B
GLU
52
n
52
GLU
52
B
VAL
53
n
53
VAL
53
B
PRO
54
n
54
PRO
54
B
GLY
55
n
55
GLY
55
B
SER
56
n
56
SER
56
B
LYS
57
n
57
LYS
57
B
SER
58
n
58
SER
58
B
THR
59
n
59
THR
59
B
ALA
60
n
60
ALA
60
B
THR
61
n
61
THR
61
B
ILE
62
n
62
ILE
62
B
SER
63
n
63
SER
63
B
GLY
64
n
64
GLY
64
B
LEU
65
n
65
LEU
65
B
LYS
66
n
66
LYS
66
B
PRO
67
n
67
PRO
67
B
GLY
68
n
68
GLY
68
B
VAL
69
n
69
VAL
69
B
ASP
70
n
70
ASP
70
B
TYR
71
n
71
TYR
71
B
THR
72
n
72
THR
72
B
ILE
73
n
73
ILE
73
B
THR
74
n
74
THR
74
B
VAL
75
n
75
VAL
75
B
TYR
76
n
76
TYR
76
B
ALA
77
n
77
ALA
77
B
HIS
78
n
78
HIS
78
B
ALA
79
n
79
ALA
79
B
GLU
80
n
80
GLU
80
B
SER
81
n
81
SER
81
B
TYR
82
n
82
TYR
82
B
GLY
83
n
83
GLY
83
B
GLU
84
n
84
GLU
84
B
SER
85
n
85
SER
85
B
TYR
86
n
86
TYR
86
B
SER
87
n
87
SER
87
B
PRO
88
n
88
PRO
88
B
ILE
89
n
89
ILE
89
B
SER
90
n
90
SER
90
B
ILE
91
n
91
ILE
91
B
ASN
92
n
92
ASN
92
B
TYR
93
n
93
TYR
93
B
ARG
94
n
94
ARG
94
B
THR
95
n
95
THR
95
B
author_and_software_defined_assembly
PISA
2
dimeric
1530
-43
10180
B
GLU
11
B
OE1
GLU
11
1_555
B
ZN
102
D
ZN
ZN
1_555
B
GLU
11
B
OE2
GLU
11
1_555
53.0
B
GLU
11
B
OE1
GLU
11
1_555
B
ZN
102
D
ZN
ZN
1_555
A
ASP
56
A
OD1
ASP
56
1_555
20.4
B
GLU
11
B
OE2
GLU
11
1_555
B
ZN
102
D
ZN
ZN
1_555
A
ASP
56
A
OD1
ASP
56
1_555
33.2
B
GLU
11
B
OE1
GLU
11
1_555
B
ZN
102
D
ZN
ZN
1_555
A
ASP
56
A
OD2
ASP
56
1_555
20.0
B
GLU
11
B
OE2
GLU
11
1_555
B
ZN
102
D
ZN
ZN
1_555
A
ASP
56
A
OD2
ASP
56
1_555
34.2
A
ASP
56
A
OD1
ASP
56
1_555
B
ZN
102
D
ZN
ZN
1_555
A
ASP
56
A
OD2
ASP
56
1_555
1.9
B
GLU
11
B
OE1
GLU
11
1_555
B
ZN
102
D
ZN
ZN
1_555
A
GLU
61
A
OE1
GLU
61
1_555
22.7
B
GLU
11
B
OE2
GLU
11
1_555
B
ZN
102
D
ZN
ZN
1_555
A
GLU
61
A
OE1
GLU
61
1_555
30.6
A
ASP
56
A
OD1
ASP
56
1_555
B
ZN
102
D
ZN
ZN
1_555
A
GLU
61
A
OE1
GLU
61
1_555
2.8
A
ASP
56
A
OD2
ASP
56
1_555
B
ZN
102
D
ZN
ZN
1_555
A
GLU
61
A
OE1
GLU
61
1_555
4.4
B
GLU
11
B
OE1
GLU
11
1_555
B
ZN
102
D
ZN
ZN
1_555
A
GLU
61
A
OE2
GLU
61
1_555
22.9
B
GLU
11
B
OE2
GLU
11
1_555
B
ZN
102
D
ZN
ZN
1_555
A
GLU
61
A
OE2
GLU
61
1_555
31.1
A
ASP
56
A
OD1
ASP
56
1_555
B
ZN
102
D
ZN
ZN
1_555
A
GLU
61
A
OE2
GLU
61
1_555
2.5
A
ASP
56
A
OD2
ASP
56
1_555
B
ZN
102
D
ZN
ZN
1_555
A
GLU
61
A
OE2
GLU
61
1_555
3.2
A
GLU
61
A
OE1
GLU
61
1_555
B
ZN
102
D
ZN
ZN
1_555
A
GLU
61
A
OE2
GLU
61
1_555
2.2
B
GLU
11
B
OE1
GLU
11
1_555
B
ZN
102
D
ZN
ZN
1_555
A
HOH
205
E
O
HOH
6_454
79.1
B
GLU
11
B
OE2
GLU
11
1_555
B
ZN
102
D
ZN
ZN
1_555
A
HOH
205
E
O
HOH
6_454
83.2
A
ASP
56
A
OD1
ASP
56
1_555
B
ZN
102
D
ZN
ZN
1_555
A
HOH
205
E
O
HOH
6_454
75.4
A
ASP
56
A
OD2
ASP
56
1_555
B
ZN
102
D
ZN
ZN
1_555
A
HOH
205
E
O
HOH
6_454
73.6
A
GLU
61
A
OE1
GLU
61
1_555
B
ZN
102
D
ZN
ZN
1_555
A
HOH
205
E
O
HOH
6_454
76.7
A
GLU
61
A
OE2
GLU
61
1_555
B
ZN
102
D
ZN
ZN
1_555
A
HOH
205
E
O
HOH
6_454
74.5
B
GLU
11
B
OE1
GLU
11
1_555
B
ZN
102
D
ZN
ZN
1_555
A
HOH
206
E
O
HOH
6_454
73.2
B
GLU
11
B
OE2
GLU
11
1_555
B
ZN
102
D
ZN
ZN
1_555
A
HOH
206
E
O
HOH
6_454
125.3
A
ASP
56
A
OD1
ASP
56
1_555
B
ZN
102
D
ZN
ZN
1_555
A
HOH
206
E
O
HOH
6_454
92.1
A
ASP
56
A
OD2
ASP
56
1_555
B
ZN
102
D
ZN
ZN
1_555
A
HOH
206
E
O
HOH
6_454
91.0
A
GLU
61
A
OE1
GLU
61
1_555
B
ZN
102
D
ZN
ZN
1_555
A
HOH
206
E
O
HOH
6_454
94.8
A
GLU
61
A
OE2
GLU
61
1_555
B
ZN
102
D
ZN
ZN
1_555
A
HOH
206
E
O
HOH
6_454
94.2
A
HOH
205
E
O
HOH
6_454
B
ZN
102
D
ZN
ZN
1_555
A
HOH
206
E
O
HOH
6_454
77.6
B
GLU
40
B
OE1
GLU
40
1_555
B
ZN
101
C
ZN
ZN
1_555
B
ASP
43
B
OD2
ASP
43
1_555
102.8
B
GLU
40
B
OE1
GLU
40
1_555
B
ZN
101
C
ZN
ZN
1_555
A
GLU
10
A
OE1
GLU
10
1_555
136.2
B
ASP
43
B
OD2
ASP
43
1_555
B
ZN
101
C
ZN
ZN
1_555
A
GLU
10
A
OE1
GLU
10
1_555
56.5
B
GLU
40
B
OE1
GLU
40
1_555
B
ZN
101
C
ZN
ZN
1_555
A
GLU
10
A
OE2
GLU
10
1_555
133.2
B
ASP
43
B
OD2
ASP
43
1_555
B
ZN
101
C
ZN
ZN
1_555
A
GLU
10
A
OE2
GLU
10
1_555
56.5
A
GLU
10
A
OE1
GLU
10
1_555
B
ZN
101
C
ZN
ZN
1_555
A
GLU
10
A
OE2
GLU
10
1_555
3.1
B
GLU
40
B
OE1
GLU
40
1_555
B
ZN
101
C
ZN
ZN
1_555
A
HOH
210
E
O
HOH
4_454
76.5
B
ASP
43
B
OD2
ASP
43
1_555
B
ZN
101
C
ZN
ZN
1_555
A
HOH
210
E
O
HOH
4_454
84.3
A
GLU
10
A
OE1
GLU
10
1_555
B
ZN
101
C
ZN
ZN
1_555
A
HOH
210
E
O
HOH
4_454
130.4
A
GLU
10
A
OE2
GLU
10
1_555
B
ZN
101
C
ZN
ZN
1_555
A
HOH
210
E
O
HOH
4_454
132.5
B
GLU
40
B
OE1
GLU
40
1_555
B
ZN
101
C
ZN
ZN
1_555
A
HOH
208
E
O
HOH
4_454
78.2
B
ASP
43
B
OD2
ASP
43
1_555
B
ZN
101
C
ZN
ZN
1_555
A
HOH
208
E
O
HOH
4_454
115.9
A
GLU
10
A
OE1
GLU
10
1_555
B
ZN
101
C
ZN
ZN
1_555
A
HOH
208
E
O
HOH
4_454
78.7
A
GLU
10
A
OE2
GLU
10
1_555
B
ZN
101
C
ZN
ZN
1_555
A
HOH
208
E
O
HOH
4_454
76.4
A
HOH
210
E
O
HOH
4_454
B
ZN
101
C
ZN
ZN
1_555
A
HOH
208
E
O
HOH
4_454
150.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PHE
14
A
N
PHE
14
A
O
ILE
38
A
O
ILE
38
A
N
SER
35
A
N
SER
35
A
O
ARG
53
A
O
ARG
53
A
N
VAL
52
A
N
VAL
52
A
O
LYS
64
A
O
LYS
64
A
N
PHE
14
A
N
PHE
14
A
O
ILE
38
A
O
ILE
38
A
N
PHE
36
A
N
PHE
36
A
O
ARG
107
A
O
ARG
107
A
N
ARG
69
A
N
ARG
69
A
O
TYR
77
A
O
TYR
77
A
N
THR
83
A
N
THR
83
B
O
GLY
83
B
O
GLY
83
B
N
VAL
13
B
N
VAL
13
B
O
LEU
21
B
O
LEU
21
B
N
ILE
22
B
N
ILE
22
B
O
ALA
60
B
O
ALA
60
B
O
VAL
53
B
O
VAL
53
B
N
TYR
34
B
N
TYR
34
B
N
GLY
39
B
N
GLY
39
B
O
THR
72
B
O
THR
72
B
N
VAL
75
B
N
VAL
75
B
O
ILE
89
B
O
ILE
89
1
A
CG
GLU
8
A
CG
GLU
8
1
Y
1
A
CD
GLU
8
A
CD
GLU
8
1
Y
1
A
OE1
GLU
8
A
OE1
GLU
8
1
Y
1
A
OE2
GLU
8
A
OE2
GLU
8
1
Y
1
A
CG
LYS
15
A
CG
LYS
15
1
Y
1
A
CD
LYS
15
A
CD
LYS
15
1
Y
1
A
CE
LYS
15
A
CE
LYS
15
1
Y
1
A
NZ
LYS
15
A
NZ
LYS
15
1
Y
1
A
CG
ASN
16
A
CG
ASN
16
1
Y
1
A
OD1
ASN
16
A
OD1
ASN
16
1
Y
1
A
ND2
ASN
16
A
ND2
ASN
16
1
Y
1
A
CG
LYS
67
A
CG
LYS
67
1
Y
1
A
CD
LYS
67
A
CD
LYS
67
1
Y
1
A
CE
LYS
67
A
CE
LYS
67
1
Y
1
A
NZ
LYS
67
A
NZ
LYS
67
1
Y
1
A
GLY
1
A
GLY
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
LYS
3
A
LYS
3
1
Y
1
A
GLN
112
A
GLN
112
1
Y
1
A
LYS
113
A
LYS
113
1
Y
1
A
PRO
114
A
PRO
114
1
Y
1
A
GLN
115
A
GLN
115
1
Y
1
A
LYS
116
A
LYS
116
1
Y
1
B
GLY
1
B
GLY
1
1
Y
1
B
SER
2
B
SER
2
1
Y
1
B
VAL
3
B
VAL
3
1
Y
1
A
A
O
O
ASN
HOH
70
201
2.11
1
A
A
OH
O
TYR
HOH
94
202
2.14
1
A
A
LYS
ASN
15
16
A
-147.85
1
A
LYS
15
B
-47.89
-114.93
1
A
ASN
16
-2.29
94.04
1
A
ASP
99
39.99
50.75
1
B
PRO
7
-72.26
-169.57
0.2568
0.2054
0.2078
2.405
40.917
1335
14544
5.01
99.79
0.33
1
THROUGHOUT
1.26
MOLECULAR REPLACEMENT
28.23
0.90
1.11
2.405
40.917
32
1584
2
0
1550
0.012
1598
1.159
2183
13.157
934
0.062
242
0.008
283
0.3826
0.3080
2.4905
130
2497
99.00
0.3190
0.2749
2.5902
133
2529
100.00
0.3145
0.2620
2.7081
131
2557
100.00
0.2842
0.2505
2.8508
135
2523
100.00
0.2747
0.2302
3.0294
135
2543
100.00
0.3653
0.2316
3.2632
132
2540
100.00
0.2424
0.2177
3.5914
134
2541
100.00
0.2683
0.2065
4.1107
133
2541
100.00
0.2041
0.1639
5.1774
133
2533
100.00
0.2417
0.1912
40.9229
139
2521
100.00
2.40
40.92
5MTM
14544
1
37.91
7.2
100
refinement
PHENIX
(1.10.1_2155: ???)
data reduction
XDS
data scaling
XDS
phasing
PHASER
N
Tyrosine-protein kinase Lck (E.C.2.7.10.2), Monobody Mb(Lck_3)
Monobody Mb(Lck_3) bound to Lck-SH2 domain
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
4
N
N
A
SER
18
A
SER
18
HELX_P
A
ALA
28
A
ALA
28
1
AA1
11
A
GLY
86
A
GLY
86
HELX_P
A
ALA
97
A
ALA
97
1
AA2
12
B
HIS
44
B
HIS
44
HELX_P
B
HIS
48
B
HIS
48
5
AA3
5
metalc
2.658
B
GLU
11
B
OE1
GLU
11
1_555
B
ZN
102
D
ZN
ZN
1_555
metalc
2.264
B
GLU
11
B
OE2
GLU
11
1_555
B
ZN
102
D
ZN
ZN
1_555
metalc
2.139
B
GLU
40
B
OE1
GLU
40
1_555
B
ZN
101
C
ZN
ZN
1_555
metalc
2.447
B
ASP
43
B
OD2
ASP
43
1_555
B
ZN
101
C
ZN
ZN
1_555
metalc
2.443
A
GLU
10
A
OE1
GLU
10
1_555
B
ZN
101
C
ZN
ZN
3_555
metalc
2.122
A
GLU
10
A
OE2
GLU
10
1_555
B
ZN
101
C
ZN
ZN
3_555
metalc
2.430
A
ASP
56
A
OD1
ASP
56
1_555
B
ZN
102
D
ZN
ZN
6_554
metalc
2.292
A
ASP
56
A
OD2
ASP
56
1_555
B
ZN
102
D
ZN
ZN
6_554
metalc
2.395
A
GLU
61
A
OE1
GLU
61
1_555
B
ZN
102
D
ZN
ZN
6_554
metalc
2.423
A
GLU
61
A
OE2
GLU
61
1_555
B
ZN
102
D
ZN
ZN
6_554
metalc
2.498
B
ZN
101
C
ZN
ZN
1_555
A
HOH
210
E
O
HOH
4_454
metalc
2.300
B
ZN
101
C
ZN
ZN
1_555
A
HOH
208
E
O
HOH
4_454
metalc
2.588
B
ZN
102
D
ZN
ZN
1_555
A
HOH
205
E
O
HOH
6_454
metalc
2.172
B
ZN
102
D
ZN
ZN
1_555
A
HOH
206
E
O
HOH
6_454
TRANSFERASE
Src homology domain, Monobodies, transferase
B
VAL
6
B
VAL
6
1
B
PRO
7
B
PRO
7
-5.22
LCK_HUMAN
UNP
1
118
P06239
KANSLEPEPWFFKNLSRKDAERQLLAPGNTHGSFLIRESESTAGSFSLSVRDFDQNQGEVVKHYKIRNLDNGGFYISPRI
TFPGLHELVRHYTNASDGLCTRLSRPCQTQKPQK
5MTM
PDB
2
1
5MTM
118
231
5MTM
3
116
P06239
A
1
3
116
1
95
5MTM
1
95
5MTM
B
2
1
95
1
expression tag
GLY
1
5MTM
A
P06239
UNP
1
1
expression tag
SER
2
5MTM
A
P06239
UNP
2
4
3
2
2
3
4
parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
PHE
13
A
PHE
13
A
PHE
14
A
PHE
14
A
SER
35
A
SER
35
A
GLU
40
A
GLU
40
A
PHE
48
A
PHE
48
A
ARG
53
A
ARG
53
A
VAL
63
A
VAL
63
A
LYS
67
A
LYS
67
A
PHE
13
A
PHE
13
A
PHE
14
A
PHE
14
A
SER
35
A
SER
35
A
GLU
40
A
GLU
40
A
ARG
107
A
ARG
107
A
PRO
108
A
PRO
108
A
ARG
69
A
ARG
69
A
ASN
70
A
ASN
70
A
PHE
76
A
PHE
76
A
TYR
77
A
TYR
77
A
ILE
82
A
ILE
82
A
THR
83
A
THR
83
B
GLY
83
B
GLY
83
B
GLU
84
B
GLU
84
B
THR
8
B
THR
8
B
ALA
15
B
ALA
15
B
LEU
20
B
LEU
20
B
ASP
25
B
ASP
25
B
THR
59
B
THR
59
B
ILE
62
B
ILE
62
B
GLN
49
B
GLN
49
B
PRO
54
B
PRO
54
B
TYR
33
B
TYR
33
B
GLU
40
B
GLU
40
B
ASP
70
B
ASP
70
B
HIS
78
B
HIS
78
B
ILE
89
B
ILE
89
B
ARG
94
B
ARG
94
binding site for residue ZN B 101
B
ZN
101
Software
5
binding site for residue ZN B 102
B
ZN
102
Software
5
A
GLU
10
A
GLU
10
5
4_454
A
HOH
208
E
HOH
5
4_454
A
HOH
210
E
HOH
5
4_454
B
GLU
40
B
GLU
40
5
1_555
B
ASP
43
B
ASP
43
5
1_555
A
ASP
56
A
ASP
56
5
6_454
A
GLU
61
A
GLU
61
5
6_454
A
HOH
205
E
HOH
5
6_454
A
HOH
206
E
HOH
5
6_454
B
GLU
11
B
GLU
11
5
1_555
92
P 41 21 2