0.018038
0.000000
0.005452
-0.000000
0.020110
0.000000
0.000000
-0.000000
0.026769
0.00000
0.00000
0.00000
Mac Sweeney, A.
Ostermann, N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
106.82
90.00
55.437
49.727
39.026
C22 H19 F4 N5 O4
493.411
(2~{S},4~{R})-~{N}1-(1-aminocarbonylindol-3-yl)-4-fluoranyl-~{N}2-[3-(trifluoromethyloxy)phenyl]pyrrolidine-1,2-dicarboxamide
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J. Med. Chem.
JMCMAR
0151
1520-4804
60
5717
5735
10.1021/acs.jmedchem.7b00425
28621538
Discovery of Highly Potent and Selective Small-Molecule Reversible Factor D Inhibitors Demonstrating Alternative Complement Pathway Inhibition in Vivo.
2017
100
1
CCD
1999-06-06
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.54719
1.0
1.54719
ROTATING ANODE
RIGAKU FR-E SUPERBRIGHT
24596.965
Complement factor D
3.4.21.46
1
man
polymer
493.411
(2~{S},4~{R})-~{N}1-(1-aminocarbonylindol-3-yl)-4-fluoranyl-~{N}2-[3-(trifluoromethyloxy)phenyl]pyrrolidine-1,2-dicarboxamide
1
syn
non-polymer
18.015
water
122
nat
water
Adipsin,C3 convertase activator,Properdin factor D
no
no
ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPD
SQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHH
DGAITERLMCAESNRRDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLASA
ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPD
SQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHH
DGAITERLMCAESNRRDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLASA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
230
CFD, DF, PFD
9606
Homo sapiens
562
Escherichia coli
Biological sequence
1
2.09
41.24
VAPOR DIFFUSION, SITTING DROP
23% PEG 3350, 0.1 M HEPES pH 7.5, 50 mM NaCl
293
citation
citation_author
repository
Initial release
Database references
1
0
2017-06-28
1
1
2017-07-26
_citation.country
_citation.journal_id_ASTM
_citation.journal_id_CSD
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.title
_citation_author.name
N
PDBE
Y
PDBE
2017-03-01
REL
REL
8S5
(2~{S},4~{R})-~{N}1-(1-aminocarbonylindol-3-yl)-4-fluoranyl-~{N}2-[3-(trifluoromethyloxy)phenyl]pyrrolidine-1,2-dicarboxamide
HOH
water
DRG
1
2
8S5
8S5
301
A
HOH
64
3
HOH
HOH
401
A
HOH
87
3
HOH
HOH
402
A
HOH
43
3
HOH
HOH
403
A
HOH
121
3
HOH
HOH
404
A
HOH
138
3
HOH
HOH
405
A
HOH
131
3
HOH
HOH
406
A
HOH
135
3
HOH
HOH
407
A
HOH
139
3
HOH
HOH
408
A
HOH
124
3
HOH
HOH
409
A
HOH
140
3
HOH
HOH
410
A
HOH
86
3
HOH
HOH
411
A
HOH
77
3
HOH
HOH
412
A
HOH
40
3
HOH
HOH
413
A
HOH
11
3
HOH
HOH
414
A
HOH
29
3
HOH
HOH
415
A
HOH
114
3
HOH
HOH
416
A
HOH
15
3
HOH
HOH
417
A
HOH
65
3
HOH
HOH
418
A
HOH
9
3
HOH
HOH
419
A
HOH
7
3
HOH
HOH
420
A
HOH
6
3
HOH
HOH
421
A
HOH
108
3
HOH
HOH
422
A
HOH
100
3
HOH
HOH
423
A
HOH
78
3
HOH
HOH
424
A
HOH
22
3
HOH
HOH
425
A
HOH
83
3
HOH
HOH
426
A
HOH
47
3
HOH
HOH
427
A
HOH
26
3
HOH
HOH
428
A
HOH
59
3
HOH
HOH
429
A
HOH
110
3
HOH
HOH
430
A
HOH
32
3
HOH
HOH
431
A
HOH
33
3
HOH
HOH
432
A
HOH
88
3
HOH
HOH
433
A
HOH
38
3
HOH
HOH
434
A
HOH
70
3
HOH
HOH
435
A
HOH
127
3
HOH
HOH
436
A
HOH
76
3
HOH
HOH
437
A
HOH
118
3
HOH
HOH
438
A
HOH
92
3
HOH
HOH
439
A
HOH
35
3
HOH
HOH
440
A
HOH
102
3
HOH
HOH
441
A
HOH
44
3
HOH
HOH
442
A
HOH
25
3
HOH
HOH
443
A
HOH
24
3
HOH
HOH
444
A
HOH
4
3
HOH
HOH
445
A
HOH
46
3
HOH
HOH
446
A
HOH
48
3
HOH
HOH
447
A
HOH
41
3
HOH
HOH
448
A
HOH
3
3
HOH
HOH
449
A
HOH
5
3
HOH
HOH
450
A
HOH
37
3
HOH
HOH
451
A
HOH
10
3
HOH
HOH
452
A
HOH
69
3
HOH
HOH
453
A
HOH
13
3
HOH
HOH
454
A
HOH
122
3
HOH
HOH
455
A
HOH
95
3
HOH
HOH
456
A
HOH
30
3
HOH
HOH
457
A
HOH
20
3
HOH
HOH
458
A
HOH
66
3
HOH
HOH
459
A
HOH
123
3
HOH
HOH
460
A
HOH
97
3
HOH
HOH
461
A
HOH
74
3
HOH
HOH
462
A
HOH
39
3
HOH
HOH
463
A
HOH
12
3
HOH
HOH
464
A
HOH
80
3
HOH
HOH
465
A
HOH
27
3
HOH
HOH
466
A
HOH
17
3
HOH
HOH
467
A
HOH
120
3
HOH
HOH
468
A
HOH
61
3
HOH
HOH
469
A
HOH
50
3
HOH
HOH
470
A
HOH
112
3
HOH
HOH
471
A
HOH
99
3
HOH
HOH
472
A
HOH
28
3
HOH
HOH
473
A
HOH
130
3
HOH
HOH
474
A
HOH
16
3
HOH
HOH
475
A
HOH
51
3
HOH
HOH
476
A
HOH
116
3
HOH
HOH
477
A
HOH
21
3
HOH
HOH
478
A
HOH
67
3
HOH
HOH
479
A
HOH
63
3
HOH
HOH
480
A
HOH
109
3
HOH
HOH
481
A
HOH
8
3
HOH
HOH
482
A
HOH
113
3
HOH
HOH
483
A
HOH
42
3
HOH
HOH
484
A
HOH
91
3
HOH
HOH
485
A
HOH
82
3
HOH
HOH
486
A
HOH
45
3
HOH
HOH
487
A
HOH
93
3
HOH
HOH
488
A
HOH
96
3
HOH
HOH
489
A
HOH
55
3
HOH
HOH
490
A
HOH
18
3
HOH
HOH
491
A
HOH
101
3
HOH
HOH
492
A
HOH
132
3
HOH
HOH
493
A
HOH
19
3
HOH
HOH
494
A
HOH
85
3
HOH
HOH
495
A
HOH
75
3
HOH
HOH
496
A
HOH
72
3
HOH
HOH
497
A
HOH
133
3
HOH
HOH
498
A
HOH
103
3
HOH
HOH
499
A
HOH
111
3
HOH
HOH
500
A
HOH
34
3
HOH
HOH
501
A
HOH
84
3
HOH
HOH
502
A
HOH
56
3
HOH
HOH
503
A
HOH
31
3
HOH
HOH
504
A
HOH
62
3
HOH
HOH
505
A
HOH
73
3
HOH
HOH
506
A
HOH
119
3
HOH
HOH
507
A
HOH
89
3
HOH
HOH
508
A
HOH
115
3
HOH
HOH
509
A
HOH
53
3
HOH
HOH
510
A
HOH
129
3
HOH
HOH
511
A
HOH
134
3
HOH
HOH
512
A
HOH
137
3
HOH
HOH
513
A
HOH
98
3
HOH
HOH
514
A
HOH
128
3
HOH
HOH
515
A
HOH
125
3
HOH
HOH
516
A
HOH
126
3
HOH
HOH
517
A
HOH
105
3
HOH
HOH
518
A
HOH
23
3
HOH
HOH
519
A
HOH
136
3
HOH
HOH
520
A
HOH
117
3
HOH
HOH
521
A
HOH
60
3
HOH
HOH
522
A
ILE
16
n
1
ILE
16
A
LEU
17
n
2
LEU
17
A
GLY
18
n
3
GLY
18
A
GLY
19
n
4
GLY
19
A
ARG
20
n
5
ARG
20
A
GLU
21
n
6
GLU
21
A
ALA
22
n
7
ALA
22
A
GLU
23
n
8
GLU
23
A
ALA
24
n
9
ALA
24
A
HIS
25
n
10
HIS
25
A
ALA
26
n
11
ALA
26
A
ARG
27
n
12
ARG
27
A
PRO
28
n
13
PRO
28
A
TYR
29
n
14
TYR
29
A
MET
30
n
15
MET
30
A
ALA
31
n
16
ALA
31
A
SER
32
n
17
SER
32
A
VAL
33
n
18
VAL
33
A
GLN
34
n
19
GLN
34
A
LEU
35
n
20
LEU
35
A
ASN
36
n
21
ASN
36
A
GLY
38
n
22
GLY
38
A
ALA
39
n
23
ALA
39
A
HIS
40
n
24
HIS
40
A
LEU
41
n
25
LEU
41
A
CYS
42
n
26
CYS
42
A
GLY
43
n
27
GLY
43
A
GLY
44
n
28
GLY
44
A
VAL
45
n
29
VAL
45
A
LEU
46
n
30
LEU
46
A
VAL
47
n
31
VAL
47
A
ALA
48
n
32
ALA
48
A
GLU
49
n
33
GLU
49
A
GLN
50
n
34
GLN
50
A
TRP
51
n
35
TRP
51
A
VAL
52
n
36
VAL
52
A
LEU
53
n
37
LEU
53
A
SER
54
n
38
SER
54
A
ALA
55
n
39
ALA
55
A
ALA
56
n
40
ALA
56
A
HIS
57
n
41
HIS
57
A
CYS
58
n
42
CYS
58
A
LEU
59
n
43
LEU
59
A
GLU
60
n
44
GLU
60
A
n
45
A
60
A
n
46
B
60
A
n
47
C
60
A
n
48
D
60
A
n
49
E
60
A
LYS
63
n
50
LYS
63
A
VAL
64
n
51
VAL
64
A
GLN
65
n
52
GLN
65
A
VAL
66
n
53
VAL
66
A
LEU
67
n
54
LEU
67
A
LEU
68
n
55
LEU
68
A
GLY
69
n
56
GLY
69
A
ALA
70
n
57
ALA
70
A
HIS
71
n
58
HIS
71
A
SER
72
n
59
SER
72
A
LEU
73
n
60
LEU
73
A
SER
74
n
61
SER
74
A
GLN
75
n
62
GLN
75
A
PRO
76
n
63
PRO
76
A
GLU
77
n
64
GLU
77
A
PRO
78
n
65
PRO
78
A
SER
79
n
66
SER
79
A
LYS
80
n
67
LYS
80
A
ARG
81
n
68
ARG
81
A
LEU
82
n
69
LEU
82
A
TYR
83
n
70
TYR
83
A
ASP
84
n
71
ASP
84
A
VAL
85
n
72
VAL
85
A
LEU
86
n
73
LEU
86
A
ARG
87
n
74
ARG
87
A
ALA
88
n
75
ALA
88
A
VAL
89
n
76
VAL
89
A
PRO
90
n
77
PRO
90
A
HIS
91
n
78
HIS
91
A
PRO
92
n
79
PRO
92
A
ASP
93
n
80
ASP
93
A
SER
94
n
81
SER
94
A
GLN
95
n
82
GLN
95
A
PRO
96
n
83
PRO
96
A
ASP
97
n
84
ASP
97
A
THR
98
n
85
THR
98
A
ILE
99
n
86
ILE
99
A
ASP
100
n
87
ASP
100
A
HIS
101
n
88
HIS
101
A
ASP
102
n
89
ASP
102
A
LEU
103
n
90
LEU
103
A
LEU
104
n
91
LEU
104
A
LEU
105
n
92
LEU
105
A
LEU
106
n
93
LEU
106
A
GLN
107
n
94
GLN
107
A
LEU
108
n
95
LEU
108
A
SER
109
n
96
SER
109
A
GLU
110
n
97
GLU
110
A
LYS
111
n
98
LYS
111
A
ALA
112
n
99
ALA
112
A
THR
113
n
100
THR
113
A
LEU
114
n
101
LEU
114
A
GLY
115
n
102
GLY
115
A
PRO
118
n
103
PRO
118
A
ALA
119
n
104
ALA
119
A
VAL
120
n
105
VAL
120
A
ARG
121
n
106
ARG
121
A
PRO
122
n
107
PRO
122
A
LEU
123
n
108
LEU
123
A
PRO
124
n
109
PRO
124
A
TRP
124
n
110
A
TRP
124
A
GLN
125
n
111
GLN
125
A
ARG
126
n
112
ARG
126
A
VAL
127
n
113
VAL
127
A
ASP
128
n
114
ASP
128
A
ARG
129
n
115
ARG
129
A
ASP
129
n
116
A
ASP
129
A
VAL
130
n
117
VAL
130
A
ALA
131
n
118
ALA
131
A
PRO
132
n
119
PRO
132
A
GLY
133
n
120
GLY
133
A
THR
134
n
121
THR
134
A
LEU
135
n
122
LEU
135
A
CYS
136
n
123
CYS
136
A
ASP
137
n
124
ASP
137
A
VAL
138
n
125
VAL
138
A
ALA
139
n
126
ALA
139
A
GLY
140
n
127
GLY
140
A
TRP
141
n
128
TRP
141
A
GLY
142
n
129
GLY
142
A
ILE
143
n
130
ILE
143
A
VAL
144
n
131
VAL
144
A
ASN
145
n
132
ASN
145
A
HIS
146
n
133
HIS
146
A
ALA
147
n
134
ALA
147
A
GLY
149
n
135
GLY
149
A
ARG
150
n
136
ARG
150
A
ARG
151
n
137
ARG
151
A
PRO
152
n
138
PRO
152
A
ASP
153
n
139
ASP
153
A
SER
154
n
140
SER
154
A
LEU
155
n
141
LEU
155
A
GLN
156
n
142
GLN
156
A
HIS
157
n
143
HIS
157
A
VAL
158
n
144
VAL
158
A
LEU
159
n
145
LEU
159
A
LEU
160
n
146
LEU
160
A
PRO
161
n
147
PRO
161
A
VAL
162
n
148
VAL
162
A
LEU
163
n
149
LEU
163
A
ASP
164
n
150
ASP
164
A
ARG
165
n
151
ARG
165
A
ALA
166
n
152
ALA
166
A
THR
167
n
153
THR
167
A
CYS
168
n
154
CYS
168
A
ASN
169
n
155
ASN
169
A
ARG
170
n
156
ARG
170
A
ARG
170
n
157
A
ARG
170
A
THR
170
n
158
B
THR
170
A
HIS
171
n
159
HIS
171
A
HIS
172
n
160
HIS
172
A
ASP
173
n
161
ASP
173
A
GLY
174
n
162
GLY
174
A
ALA
175
n
163
ALA
175
A
ILE
176
n
164
ILE
176
A
THR
177
n
165
THR
177
A
GLU
178
n
166
GLU
178
A
ARG
179
n
167
ARG
179
A
LEU
180
n
168
LEU
180
A
MET
181
n
169
MET
181
A
CYS
182
n
170
CYS
182
A
ALA
183
n
171
ALA
183
A
GLU
184
n
172
GLU
184
A
SER
185
n
173
SER
185
A
ASN
186
n
174
ASN
186
A
ARG
187
n
175
ARG
187
A
ARG
188
n
176
ARG
188
A
ASP
189
n
177
ASP
189
A
SER
190
n
178
SER
190
A
CYS
191
n
179
CYS
191
A
LYS
192
n
180
LYS
192
A
GLY
193
n
181
GLY
193
A
ASP
194
n
182
ASP
194
A
SER
195
n
183
SER
195
A
GLY
196
n
184
GLY
196
A
GLY
197
n
185
GLY
197
A
PRO
198
n
186
PRO
198
A
LEU
199
n
187
LEU
199
A
VAL
200
n
188
VAL
200
A
CYS
201
n
189
CYS
201
A
GLY
202
n
190
GLY
202
A
GLY
207
n
191
GLY
207
A
VAL
208
n
192
VAL
208
A
LEU
209
n
193
LEU
209
A
GLU
210
n
194
GLU
210
A
GLY
211
n
195
GLY
211
A
VAL
212
n
196
VAL
212
A
VAL
213
n
197
VAL
213
A
THR
214
n
198
THR
214
A
SER
215
n
199
SER
215
A
GLY
216
n
200
GLY
216
A
SER
217
n
201
SER
217
A
ARG
218
n
202
ARG
218
A
VAL
219
n
203
VAL
219
A
CYS
220
n
204
CYS
220
A
GLY
221
n
205
GLY
221
A
ASN
222
n
206
ASN
222
A
ARG
223
n
207
ARG
223
A
LYS
223
n
208
A
LYS
223
A
LYS
224
n
209
LYS
224
A
PRO
225
n
210
PRO
225
A
GLY
226
n
211
GLY
226
A
ILE
227
n
212
ILE
227
A
TYR
228
n
213
TYR
228
A
THR
229
n
214
THR
229
A
ARG
230
n
215
ARG
230
A
VAL
231
n
216
VAL
231
A
ALA
232
n
217
ALA
232
A
SER
233
n
218
SER
233
A
TYR
234
n
219
TYR
234
A
ALA
235
n
220
ALA
235
A
ALA
236
n
221
ALA
236
A
TRP
237
n
222
TRP
237
A
ILE
238
n
223
ILE
238
A
ASP
239
n
224
ASP
239
A
SER
240
n
225
SER
240
A
VAL
241
n
226
VAL
241
A
LEU
242
n
227
LEU
242
A
ALA
243
n
228
ALA
243
A
SER
244
n
229
SER
244
A
ALA
245
n
230
ALA
245
A
author_and_software_defined_assembly
PISA
1
monomeric
gel filtration
0
0
9430
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
20
A
N
ARG
5
A
O
HIS
157
A
O
HIS
143
A
N
LEU
163
A
N
LEU
149
A
O
CYS
182
A
O
CYS
170
A
N
MET
181
A
N
MET
169
A
O
TYR
228
A
O
TYR
213
A
O
THR
229
A
O
THR
214
A
N
VAL
212
A
N
VAL
196
A
O
GLY
211
A
O
GLY
195
A
N
LEU
199
A
N
LEU
187
A
O
VAL
200
A
O
VAL
188
A
N
ASP
137
A
N
ASP
124
A
N
CYS
136
A
N
CYS
123
A
O
LEU
160
A
O
LEU
146
A
N
VAL
33
A
N
VAL
18
A
O
CYS
42
A
O
CYS
26
A
N
VAL
45
A
N
VAL
29
A
O
LEU
53
A
O
LEU
37
A
N
SER
54
A
N
SER
38
A
O
LEU
104
A
O
LEU
91
A
O
LEU
105
A
O
LEU
92
A
N
VAL
89
A
N
VAL
76
A
O
TYR
83
A
O
TYR
70
A
N
VAL
66
A
N
VAL
53
A
O
LEU
67
A
O
LEU
54
A
N
SER
32
A
N
SER
17
1
A
CG
ARG
20
A
CG
ARG
5
1
Y
1
A
CD
ARG
20
A
CD
ARG
5
1
Y
1
A
NE
ARG
20
A
NE
ARG
5
1
Y
1
A
CZ
ARG
20
A
CZ
ARG
5
1
Y
1
A
NH1
ARG
20
A
NH1
ARG
5
1
Y
1
A
NH2
ARG
20
A
NH2
ARG
5
1
Y
1
A
CG
GLU
23
A
CG
GLU
8
1
Y
1
A
CD
GLU
23
A
CD
GLU
8
1
Y
1
A
OE1
GLU
23
A
OE1
GLU
8
1
Y
1
A
OE2
GLU
23
A
OE2
GLU
8
1
Y
1
A
CG
GLU
60
A
CG
GLU
44
1
Y
1
A
CD
GLU
60
A
CD
GLU
44
1
Y
1
A
OE1
GLU
60
A
OE1
GLU
44
1
Y
1
A
OE2
GLU
60
A
OE2
GLU
44
1
Y
1
A
CG
ARG
121
A
CG
ARG
106
1
Y
1
A
CD
ARG
121
A
CD
ARG
106
1
Y
1
A
NE
ARG
121
A
NE
ARG
106
1
Y
1
A
CZ
ARG
121
A
CZ
ARG
106
1
Y
1
A
NH1
ARG
121
A
NH1
ARG
106
1
Y
1
A
NH2
ARG
121
A
NH2
ARG
106
1
Y
1
A
NE
ARG
150
A
NE
ARG
136
1
Y
1
A
CZ
ARG
150
A
CZ
ARG
136
1
Y
1
A
NH1
ARG
150
A
NH1
ARG
136
1
Y
1
A
NH2
ARG
150
A
NH2
ARG
136
1
Y
1
A
NE
ARG
151
A
NE
ARG
137
1
Y
1
A
CZ
ARG
151
A
CZ
ARG
137
1
Y
1
A
NH1
ARG
151
A
NH1
ARG
137
1
Y
1
A
NH2
ARG
151
A
NH2
ARG
137
1
Y
1
A
CG
ARG
170
A
CG
ARG
156
1
Y
1
A
CD
ARG
170
A
CD
ARG
156
1
Y
1
A
NE
ARG
170
A
NE
ARG
156
1
Y
1
A
CZ
ARG
170
A
CZ
ARG
156
1
Y
1
A
NH1
ARG
170
A
NH1
ARG
156
1
Y
1
A
NH2
ARG
170
A
NH2
ARG
156
1
Y
A
1
A
CG
ARG
170
A
CG
ARG
157
1
Y
A
1
A
CD
ARG
170
A
CD
ARG
157
1
Y
A
1
A
NE
ARG
170
A
NE
ARG
157
1
Y
A
1
A
CZ
ARG
170
A
CZ
ARG
157
1
Y
A
1
A
NH1
ARG
170
A
NH1
ARG
157
1
Y
A
1
A
NH2
ARG
170
A
NH2
ARG
157
1
Y
1
A
CG
ARG
187
A
CG
ARG
175
1
Y
1
A
CD
ARG
187
A
CD
ARG
175
1
Y
1
A
NE
ARG
187
A
NE
ARG
175
1
Y
1
A
CZ
ARG
187
A
CZ
ARG
175
1
Y
1
A
NH1
ARG
187
A
NH1
ARG
175
1
Y
1
A
NH2
ARG
187
A
NH2
ARG
175
1
Y
1
A
NE
ARG
223
A
NE
ARG
207
1
Y
1
A
CZ
ARG
223
A
CZ
ARG
207
1
Y
1
A
NH1
ARG
223
A
NH1
ARG
207
1
Y
1
A
NH2
ARG
223
A
NH2
ARG
207
1
Y
A
1
A
CG
LYS
223
A
CG
LYS
208
1
Y
A
1
A
CD
LYS
223
A
CD
LYS
208
1
Y
A
1
A
CE
LYS
223
A
CE
LYS
208
1
Y
A
1
A
NZ
LYS
223
A
NZ
LYS
208
1
Y
A
1
A
ASP
60
A
ASP
45
1
Y
B
1
A
ALA
60
A
ALA
46
1
Y
C
1
A
ALA
60
A
ALA
47
1
Y
D
1
A
ASP
60
A
ASP
48
1
Y
E
1
A
GLY
60
A
GLY
49
1
Y
1
A
HIS
171
-98.48
-105.82
1
A
ARG
187
67.56
-43.94
1
A
SER
195
-29.38
124.02
16.062
-0.16
0.00
0.05
-0.07
-0.00
0.17
0.950
0.897
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.25999
0.17273
0.17685
1.87
53.07
781
14826
5.0
92.27
3.710
0.110
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.167
0.179
0.80
0.80
1.20
1.87
53.07
122
1795
35
0
1638
0.016
0.019
1756
0.002
0.020
1592
1.775
1.959
2416
1.056
2.985
3692
6.479
5.000
237
35.561
23.750
64
14.898
15.000
257
19.456
15.000
10
0.423
0.200
278
0.008
0.021
2010
0.002
0.020
330
1.407
1.544
921
1.397
1.541
920
2.074
2.303
1155
2.073
2.307
1156
1.720
1.725
835
1.719
1.725
836
2.713
2.511
1258
3.858
18.795
1862
3.857
18.791
1863
0.292
0.244
1.920
54
1026
20
86.96
1.87
53.1
5NBA
15609
1
12.7
3.06
92.0
1.87
1.95
3.6
1694
1
refinement
REFMAC
5.8.0158
data reduction
XDS
data scaling
XSCALE
phasing
PHASER
N
Complement factor D (E.C.3.4.21.46)
Complement factor D in complex with the inhibitor (2S,4R)-4-Fluoro-pyrrolidine-1,2-dicarboxylic acid 1-[(1-carbamoyl-1H-indol-3-yl)-amide] 2-[(3-trifluoromethoxy-phenyl)-amide]
1
N
N
2
N
N
3
N
N
A
ALA
55
A
ALA
39
HELX_P
A
GLU
60
A
GLU
44
5
AA1
6
A
ASP
164
A
ASP
150
HELX_P
A
ASN
169
A
ASN
155
1
AA2
6
A
TYR
234
A
TYR
219
HELX_P
A
SER
244
A
SER
229
1
AA3
11
disulf
2.017
A
CYS
42
A
SG
CYS
26
1_555
A
CYS
58
A
SG
CYS
42
1_555
disulf
2.044
A
CYS
136
A
SG
CYS
123
1_555
A
CYS
201
A
SG
CYS
189
1_555
disulf
2.029
A
CYS
168
A
SG
CYS
154
1_555
A
CYS
182
A
SG
CYS
170
1_555
disulf
2.054
A
CYS
191
A
SG
CYS
179
1_555
A
CYS
220
A
SG
CYS
204
1_555
HYDROLASE
HYDROLASE
CFAD_HUMAN
UNP
1
26
P00746
ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPD
SQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHH
DGAITERLMCAESNRRDSCKGDSGGPLVCGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA
26
253
5NBA
16
243
P00746
A
1
1
228
1
expression tag
SER
244
5NBA
A
P00746
UNP
229
1
expression tag
ALA
245
5NBA
A
P00746
UNP
230
8
7
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
20
A
ARG
5
A
GLU
21
A
GLU
6
A
GLN
156
A
GLN
142
A
LEU
163
A
LEU
149
A
LEU
180
A
LEU
168
A
ALA
183
A
ALA
171
A
GLY
226
A
GLY
211
A
ARG
230
A
ARG
215
A
VAL
208
A
VAL
192
A
VAL
213
A
VAL
197
A
PRO
198
A
PRO
186
A
CYS
201
A
CYS
189
A
LEU
135
A
LEU
122
A
GLY
140
A
GLY
127
A
GLN
156
A
GLN
142
A
LEU
163
A
LEU
149
A
MET
30
A
MET
15
A
LEU
35
A
LEU
20
A
ALA
39
A
ALA
23
A
ALA
48
A
ALA
32
A
TRP
51
A
TRP
35
A
SER
54
A
SER
38
A
LEU
104
A
LEU
91
A
LEU
108
A
LEU
95
A
ARG
81
A
ARG
68
A
PRO
90
A
PRO
77
A
VAL
64
A
VAL
51
A
LEU
68
A
LEU
55
A
MET
30
A
MET
15
A
LEU
35
A
LEU
20
binding site for residue 8S5 A 301
A
8S5
301
Software
22
A
HIS
40
A
HIS
24
22
1_555
A
LEU
41
A
LEU
25
22
1_555
A
CYS
42
A
CYS
26
22
1_555
A
HIS
57
A
HIS
41
22
1_555
A
CYS
58
A
CYS
42
22
1_555
A
TRP
141
A
TRP
128
22
1_555
A
GLY
142
A
GLY
129
22
1_555
A
ILE
143
A
ILE
130
22
1_555
A
ARG
151
A
ARG
137
22
1_555
A
SER
190
A
SER
178
22
1_555
A
CYS
191
A
CYS
179
22
1_555
A
LYS
192
A
LYS
180
22
1_555
A
GLY
193
A
GLY
181
22
1_555
A
SER
195
A
SER
183
22
1_555
A
VAL
213
A
VAL
197
22
1_555
A
THR
214
A
THR
198
22
1_555
A
SER
215
A
SER
199
22
1_555
A
GLY
216
A
GLY
200
22
1_555
A
ARG
218
A
ARG
202
22
1_555
A
CYS
220
A
CYS
204
22
1_555
A
HOH
467
C
HOH
22
1_555
A
HOH
473
C
HOH
22
1_555
4
P 1 21 1