0.010149
0.005860
0.000000
0.000000
0.011720
0.000000
0.000000
0.000000
0.012441
0.00000
0.00000
0.00000
Siefker, C.
Heine, A.
Klebe, G.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
98.528
98.528
80.378
C14 H10 N2 O S
254.307
3-(2-thiophen-2-ylethenyl)-1~{H}-quinoxalin-2-one
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Y
1
N
C
Y
2
N
C
N
3
N
C
N
4
N
N
N
5
N
C
N
6
N
C
N
7
N
O
N
8
N
N
Y
9
N
C
Y
10
N
C
Y
11
N
C
Y
12
N
C
N
13
N
H
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
C
Y
20
N
C
Y
21
N
C
Y
22
N
C
Y
23
N
C
Y
24
N
S
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
N
N
30
S
C
N
31
N
C
N
32
N
O
N
33
N
C
N
34
N
O
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
N
N
43
S
C
N
44
N
C
N
45
N
O
N
46
N
C
N
47
N
C
N
48
N
C
N
49
N
N
N
50
N
C
N
51
N
N
N
52
N
N
N
53
N
O
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
N
N
70
S
C
N
71
N
C
N
72
N
O
N
73
N
C
N
74
N
C
N
75
N
O
N
76
N
N
N
77
N
O
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
N
N
87
S
C
N
88
N
C
N
89
N
O
N
90
N
C
N
91
N
C
N
92
N
O
N
93
N
O
N
94
N
O
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
N
N
103
R
C
N
104
N
C
N
105
N
O
N
106
N
C
N
107
N
S
N
108
N
O
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
S
C
N
118
N
C
N
119
N
O
N
120
N
C
N
121
N
C
N
122
N
C
N
123
N
O
N
124
N
N
N
125
N
O
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
N
N
137
S
C
N
138
N
C
N
139
N
O
N
140
N
C
N
141
N
C
N
142
N
C
N
143
N
O
N
144
N
O
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
N
N
156
N
C
N
157
N
C
N
158
N
O
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
C
N
166
N
O
N
167
N
C
N
168
N
O
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
N
N
180
S
C
N
181
N
C
N
182
N
O
N
183
N
C
Y
184
N
C
Y
185
N
N
Y
186
N
C
Y
187
N
C
Y
188
N
N
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
N
N
204
S
C
N
205
N
C
N
206
N
O
N
207
S
C
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
O
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
N
N
226
S
C
N
227
N
C
N
228
N
O
N
229
N
C
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
O
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
N
N
256
N
O
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
N
277
N
C
N
278
N
S
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
Y
297
N
C
Y
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
N
303
N
O
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
N
N
316
S
C
N
317
N
C
N
318
N
O
N
319
N
C
N
320
N
C
N
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
N
N
333
S
C
N
334
N
C
N
335
N
O
N
336
N
C
N
337
N
O
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
R
C
N
351
N
O
N
352
N
C
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
N
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
N
401
N
O
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
N
419
N
C
N
420
N
C
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
1
N
sing
N
2
N
doub
N
3
N
sing
Y
4
N
doub
Y
5
N
sing
N
6
N
sing
Y
7
N
sing
Y
8
N
doub
N
9
N
doub
N
10
N
sing
N
11
N
sing
Y
12
N
doub
Y
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
doub
N
21
N
sing
Y
22
N
doub
Y
23
N
sing
Y
24
N
doub
Y
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
Y
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
doub
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
doub
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
doub
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
doub
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
doub
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
doub
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
doub
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
Y
183
N
sing
Y
184
N
doub
Y
185
N
doub
N
186
N
sing
Y
187
N
sing
N
188
N
sing
Y
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
doub
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
doub
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
Y
291
N
doub
Y
292
N
sing
Y
293
N
sing
N
294
N
sing
Y
295
N
doub
N
296
N
sing
Y
297
N
doub
N
298
N
sing
Y
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
doub
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
Y
360
N
doub
Y
361
N
sing
Y
362
N
sing
N
363
N
sing
Y
364
N
doub
Y
365
N
sing
Y
366
N
sing
N
367
N
sing
Y
368
N
sing
Y
369
N
doub
N
370
N
sing
Y
371
N
doub
N
372
N
sing
Y
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
doub
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
Y
388
N
doub
Y
389
N
sing
Y
390
N
sing
N
391
N
sing
Y
392
N
doub
N
393
N
sing
Y
394
N
doub
N
395
N
sing
Y
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
doub
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
to be published
0353
A crystallographic fragment study with human Pim-1 kinase
10.2210/pdb5ndt/pdb
pdb_00005ndt
100
1
Silicon
PIXEL
2016-07-02
DECTRIS PILATUS 6M-F
Si-111 crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.979
1.0
ID29
ESRF
0.979
SYNCHROTRON
ESRF BEAMLINE ID29
Isofrom 2 of PIM-1 kinase
35632.602
Serine/threonine-protein kinase pim-1
2.7.11.1
R250G
1
man
polymer
PIM-1 consensus peptide
1592.850
Pimtide
1
syn
polymer
92.094
GLYCEROL
1
syn
non-polymer
254.307
3-(2-thiophen-2-ylethenyl)-1~{H}-quinoxalin-2-one
1
syn
non-polymer
18.015
water
122
nat
water
no
no
MLLSKINSLAHLRAAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGEL
PNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHN
CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI
PFEHDEEIIGGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK
MLLSKINSLAHLRAAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGEL
PNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHN
CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI
PFEHDEEIIGGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK
A
polypeptide(L)
no
no
ARKRRRHPSGPPTA
ARKRRRHPSGPPTA
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
313
PIM1
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
pLysS
Plasmid
Biological sequence
pLIC-SGC
1
3.14
61
hexagonal rod
VAPOR DIFFUSION, SITTING DROP
7.0
HEPES
NaCl
Glycerol
DTT
BIS-TRIS-propane
PEG3350
Ethylene-glycol
DMSO
277
reflns
reflns_shell
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Data collection
Data collection
Database references
Refinement description
1
0
2018-05-16
1
1
2019-08-14
1
2
2024-01-17
_reflns.pdbx_Rrim_I_all
_reflns_shell.pdbx_Rrim_I_all
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
N
PDBE
Y
PDBE
2017-03-09
REL
REL
GOL
GLYCEROL
8UB
3-(2-thiophen-2-ylethenyl)-1~{H}-quinoxalin-2-one
HOH
water
9606
Human
Homo sapiens
sample
1
14
3WE8
PDB
experimental model
GOL
1
3
GOL
GOL
401
A
XXX
1
4
8UB
8UB
402
A
HOH
34
5
HOH
HOH
501
A
HOH
106
5
HOH
HOH
502
A
HOH
81
5
HOH
HOH
503
A
HOH
113
5
HOH
HOH
504
A
HOH
64
5
HOH
HOH
505
A
HOH
80
5
HOH
HOH
506
A
HOH
65
5
HOH
HOH
507
A
HOH
8
5
HOH
HOH
508
A
HOH
29
5
HOH
HOH
509
A
HOH
97
5
HOH
HOH
510
A
HOH
33
5
HOH
HOH
511
A
HOH
40
5
HOH
HOH
512
A
HOH
36
5
HOH
HOH
513
A
HOH
82
5
HOH
HOH
514
A
HOH
27
5
HOH
HOH
515
A
HOH
131
5
HOH
HOH
516
A
HOH
58
5
HOH
HOH
517
A
HOH
9
5
HOH
HOH
518
A
HOH
87
5
HOH
HOH
519
A
HOH
88
5
HOH
HOH
520
A
HOH
93
5
HOH
HOH
521
A
HOH
30
5
HOH
HOH
522
A
HOH
16
5
HOH
HOH
523
A
HOH
77
5
HOH
HOH
524
A
HOH
130
5
HOH
HOH
525
A
HOH
5
5
HOH
HOH
526
A
HOH
78
5
HOH
HOH
527
A
HOH
134
5
HOH
HOH
528
A
HOH
55
5
HOH
HOH
529
A
HOH
101
5
HOH
HOH
530
A
HOH
2
5
HOH
HOH
531
A
HOH
13
5
HOH
HOH
532
A
HOH
121
5
HOH
HOH
533
A
HOH
110
5
HOH
HOH
534
A
HOH
71
5
HOH
HOH
535
A
HOH
31
5
HOH
HOH
536
A
HOH
35
5
HOH
HOH
537
A
HOH
122
5
HOH
HOH
538
A
HOH
98
5
HOH
HOH
539
A
HOH
54
5
HOH
HOH
540
A
HOH
10
5
HOH
HOH
541
A
HOH
4
5
HOH
HOH
542
A
HOH
89
5
HOH
HOH
543
A
HOH
124
5
HOH
HOH
544
A
HOH
26
5
HOH
HOH
545
A
HOH
12
5
HOH
HOH
546
A
HOH
37
5
HOH
HOH
547
A
HOH
91
5
HOH
HOH
548
A
HOH
53
5
HOH
HOH
549
A
HOH
1
5
HOH
HOH
550
A
HOH
14
5
HOH
HOH
551
A
HOH
76
5
HOH
HOH
552
A
HOH
128
5
HOH
HOH
553
A
HOH
24
5
HOH
HOH
554
A
HOH
119
5
HOH
HOH
555
A
HOH
69
5
HOH
HOH
556
A
HOH
112
5
HOH
HOH
557
A
HOH
74
5
HOH
HOH
558
A
HOH
96
5
HOH
HOH
559
A
HOH
57
5
HOH
HOH
560
A
HOH
22
5
HOH
HOH
561
A
HOH
67
5
HOH
HOH
562
A
HOH
49
5
HOH
HOH
563
A
HOH
11
5
HOH
HOH
564
A
HOH
115
5
HOH
HOH
565
A
HOH
126
5
HOH
HOH
566
A
HOH
21
5
HOH
HOH
567
A
HOH
133
5
HOH
HOH
568
A
HOH
39
5
HOH
HOH
569
A
HOH
20
5
HOH
HOH
570
A
HOH
44
5
HOH
HOH
571
A
HOH
100
5
HOH
HOH
572
A
HOH
129
5
HOH
HOH
573
A
HOH
42
5
HOH
HOH
574
A
HOH
50
5
HOH
HOH
575
A
HOH
28
5
HOH
HOH
576
A
HOH
45
5
HOH
HOH
577
A
HOH
86
5
HOH
HOH
578
A
HOH
127
5
HOH
HOH
579
A
HOH
66
5
HOH
HOH
580
A
HOH
32
5
HOH
HOH
581
A
HOH
23
5
HOH
HOH
582
A
HOH
90
5
HOH
HOH
583
A
HOH
114
5
HOH
HOH
584
A
HOH
83
5
HOH
HOH
585
A
HOH
92
5
HOH
HOH
586
A
HOH
63
5
HOH
HOH
587
A
HOH
84
5
HOH
HOH
588
A
HOH
38
5
HOH
HOH
589
A
HOH
79
5
HOH
HOH
590
A
HOH
51
5
HOH
HOH
591
A
HOH
7
5
HOH
HOH
592
A
HOH
43
5
HOH
HOH
593
A
HOH
15
5
HOH
HOH
594
A
HOH
111
5
HOH
HOH
595
A
HOH
60
5
HOH
HOH
596
A
HOH
18
5
HOH
HOH
597
A
HOH
25
5
HOH
HOH
598
A
HOH
17
5
HOH
HOH
599
A
HOH
59
5
HOH
HOH
600
A
HOH
72
5
HOH
HOH
601
A
HOH
102
5
HOH
HOH
602
A
HOH
70
5
HOH
HOH
603
A
HOH
118
5
HOH
HOH
604
A
HOH
132
5
HOH
HOH
605
A
HOH
3
5
HOH
HOH
606
A
HOH
68
5
HOH
HOH
607
A
HOH
73
5
HOH
HOH
608
A
HOH
46
5
HOH
HOH
609
A
HOH
117
5
HOH
HOH
610
A
HOH
125
5
HOH
HOH
611
A
HOH
94
5
HOH
HOH
612
A
HOH
105
5
HOH
HOH
613
A
HOH
95
5
HOH
HOH
614
A
HOH
123
5
HOH
HOH
615
A
HOH
75
5
HOH
HOH
101
B
HOH
108
5
HOH
HOH
102
B
HOH
107
5
HOH
HOH
103
B
HOH
61
5
HOH
HOH
104
B
HOH
99
5
HOH
HOH
105
B
HOH
116
5
HOH
HOH
106
B
HOH
52
5
HOH
HOH
107
B
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
n
7
7
A
n
8
8
A
n
9
9
A
n
10
10
A
n
11
11
A
n
12
12
A
n
13
13
A
n
14
14
A
n
15
15
A
n
16
16
A
n
17
17
A
n
18
18
A
n
19
19
A
n
20
20
A
n
21
21
A
n
22
22
A
n
23
23
A
n
24
24
A
n
25
25
A
n
26
26
A
n
27
27
A
n
28
28
A
n
29
29
A
n
30
30
A
n
31
31
A
n
32
32
A
PRO
33
n
33
PRO
33
A
LEU
34
n
34
LEU
34
A
GLU
35
n
35
GLU
35
A
SER
36
n
36
SER
36
A
GLN
37
n
37
GLN
37
A
TYR
38
n
38
TYR
38
A
GLN
39
n
39
GLN
39
A
VAL
40
n
40
VAL
40
A
GLY
41
n
41
GLY
41
A
PRO
42
n
42
PRO
42
A
LEU
43
n
43
LEU
43
A
LEU
44
n
44
LEU
44
A
GLY
45
n
45
GLY
45
A
SER
46
n
46
SER
46
A
GLY
47
n
47
GLY
47
A
GLY
48
n
48
GLY
48
A
PHE
49
n
49
PHE
49
A
GLY
50
n
50
GLY
50
A
SER
51
n
51
SER
51
A
VAL
52
n
52
VAL
52
A
TYR
53
n
53
TYR
53
A
SER
54
n
54
SER
54
A
GLY
55
n
55
GLY
55
A
ILE
56
n
56
ILE
56
A
ARG
57
n
57
ARG
57
A
VAL
58
n
58
VAL
58
A
SER
59
n
59
SER
59
A
ASP
60
n
60
ASP
60
A
ASN
61
n
61
ASN
61
A
LEU
62
n
62
LEU
62
A
PRO
63
n
63
PRO
63
A
VAL
64
n
64
VAL
64
A
ALA
65
n
65
ALA
65
A
ILE
66
n
66
ILE
66
A
LYS
67
n
67
LYS
67
A
HIS
68
n
68
HIS
68
A
VAL
69
n
69
VAL
69
A
GLU
70
n
70
GLU
70
A
LYS
71
n
71
LYS
71
A
ASP
72
n
72
ASP
72
A
ARG
73
n
73
ARG
73
A
ILE
74
n
74
ILE
74
A
SER
75
n
75
SER
75
A
ASP
76
n
76
ASP
76
A
TRP
77
n
77
TRP
77
A
GLY
78
n
78
GLY
78
A
GLU
79
n
79
GLU
79
A
LEU
80
n
80
LEU
80
A
PRO
81
n
81
PRO
81
A
ASN
82
n
82
ASN
82
A
GLY
83
n
83
GLY
83
A
THR
84
n
84
THR
84
A
ARG
85
n
85
ARG
85
A
VAL
86
n
86
VAL
86
A
PRO
87
n
87
PRO
87
A
MET
88
n
88
MET
88
A
GLU
89
n
89
GLU
89
A
VAL
90
n
90
VAL
90
A
VAL
91
n
91
VAL
91
A
LEU
92
n
92
LEU
92
A
LEU
93
n
93
LEU
93
A
LYS
94
n
94
LYS
94
A
LYS
95
n
95
LYS
95
A
VAL
96
n
96
VAL
96
A
SER
97
n
97
SER
97
A
SER
98
n
98
SER
98
A
GLY
99
n
99
GLY
99
A
PHE
100
n
100
PHE
100
A
SER
101
n
101
SER
101
A
GLY
102
n
102
GLY
102
A
VAL
103
n
103
VAL
103
A
ILE
104
n
104
ILE
104
A
ARG
105
n
105
ARG
105
A
LEU
106
n
106
LEU
106
A
LEU
107
n
107
LEU
107
A
ASP
108
n
108
ASP
108
A
TRP
109
n
109
TRP
109
A
PHE
110
n
110
PHE
110
A
GLU
111
n
111
GLU
111
A
ARG
112
n
112
ARG
112
A
PRO
113
n
113
PRO
113
A
ASP
114
n
114
ASP
114
A
SER
115
n
115
SER
115
A
PHE
116
n
116
PHE
116
A
VAL
117
n
117
VAL
117
A
LEU
118
n
118
LEU
118
A
ILE
119
n
119
ILE
119
A
LEU
120
n
120
LEU
120
A
GLU
121
n
121
GLU
121
A
ARG
122
n
122
ARG
122
A
PRO
123
n
123
PRO
123
A
GLU
124
n
124
GLU
124
A
PRO
125
n
125
PRO
125
A
VAL
126
n
126
VAL
126
A
GLN
127
n
127
GLN
127
A
ASP
128
n
128
ASP
128
A
LEU
129
n
129
LEU
129
A
PHE
130
n
130
PHE
130
A
ASP
131
n
131
ASP
131
A
PHE
132
n
132
PHE
132
A
ILE
133
n
133
ILE
133
A
THR
134
n
134
THR
134
A
GLU
135
n
135
GLU
135
A
ARG
136
n
136
ARG
136
A
GLY
137
n
137
GLY
137
A
ALA
138
n
138
ALA
138
A
LEU
139
n
139
LEU
139
A
GLN
140
n
140
GLN
140
A
GLU
141
n
141
GLU
141
A
GLU
142
n
142
GLU
142
A
LEU
143
n
143
LEU
143
A
ALA
144
n
144
ALA
144
A
ARG
145
n
145
ARG
145
A
SER
146
n
146
SER
146
A
PHE
147
n
147
PHE
147
A
PHE
148
n
148
PHE
148
A
TRP
149
n
149
TRP
149
A
GLN
150
n
150
GLN
150
A
VAL
151
n
151
VAL
151
A
LEU
152
n
152
LEU
152
A
GLU
153
n
153
GLU
153
A
ALA
154
n
154
ALA
154
A
VAL
155
n
155
VAL
155
A
ARG
156
n
156
ARG
156
A
HIS
157
n
157
HIS
157
A
CYS
158
n
158
CYS
158
A
HIS
159
n
159
HIS
159
A
ASN
160
n
160
ASN
160
A
CYS
161
n
161
CYS
161
A
GLY
162
n
162
GLY
162
A
VAL
163
n
163
VAL
163
A
LEU
164
n
164
LEU
164
A
HIS
165
n
165
HIS
165
A
ARG
166
n
166
ARG
166
A
ASP
167
n
167
ASP
167
A
ILE
168
n
168
ILE
168
A
LYS
169
n
169
LYS
169
A
ASP
170
n
170
ASP
170
A
GLU
171
n
171
GLU
171
A
ASN
172
n
172
ASN
172
A
ILE
173
n
173
ILE
173
A
LEU
174
n
174
LEU
174
A
ILE
175
n
175
ILE
175
A
ASP
176
n
176
ASP
176
A
LEU
177
n
177
LEU
177
A
ASN
178
n
178
ASN
178
A
ARG
179
n
179
ARG
179
A
GLY
180
n
180
GLY
180
A
GLU
181
n
181
GLU
181
A
LEU
182
n
182
LEU
182
A
LYS
183
n
183
LYS
183
A
LEU
184
n
184
LEU
184
A
ILE
185
n
185
ILE
185
A
ASP
186
n
186
ASP
186
A
PHE
187
n
187
PHE
187
A
GLY
188
n
188
GLY
188
A
SER
189
n
189
SER
189
A
GLY
190
n
190
GLY
190
A
ALA
191
n
191
ALA
191
A
LEU
192
n
192
LEU
192
A
LEU
193
n
193
LEU
193
A
LYS
194
n
194
LYS
194
A
ASP
195
n
195
ASP
195
A
THR
196
n
196
THR
196
A
VAL
197
n
197
VAL
197
A
TYR
198
n
198
TYR
198
A
THR
199
n
199
THR
199
A
ASP
200
n
200
ASP
200
A
PHE
201
n
201
PHE
201
A
ASP
202
n
202
ASP
202
A
GLY
203
n
203
GLY
203
A
THR
204
n
204
THR
204
A
ARG
205
n
205
ARG
205
A
VAL
206
n
206
VAL
206
A
TYR
207
n
207
TYR
207
A
SER
208
n
208
SER
208
A
PRO
209
n
209
PRO
209
A
PRO
210
n
210
PRO
210
A
GLU
211
n
211
GLU
211
A
TRP
212
n
212
TRP
212
A
ILE
213
n
213
ILE
213
A
ARG
214
n
214
ARG
214
A
TYR
215
n
215
TYR
215
A
HIS
216
n
216
HIS
216
A
ARG
217
n
217
ARG
217
A
TYR
218
n
218
TYR
218
A
HIS
219
n
219
HIS
219
A
GLY
220
n
220
GLY
220
A
ARG
221
n
221
ARG
221
A
SER
222
n
222
SER
222
A
ALA
223
n
223
ALA
223
A
ALA
224
n
224
ALA
224
A
VAL
225
n
225
VAL
225
A
TRP
226
n
226
TRP
226
A
SER
227
n
227
SER
227
A
LEU
228
n
228
LEU
228
A
GLY
229
n
229
GLY
229
A
ILE
230
n
230
ILE
230
A
LEU
231
n
231
LEU
231
A
LEU
232
n
232
LEU
232
A
TYR
233
n
233
TYR
233
A
ASP
234
n
234
ASP
234
A
MET
235
n
235
MET
235
A
VAL
236
n
236
VAL
236
A
CYS
237
n
237
CYS
237
A
GLY
238
n
238
GLY
238
A
ASP
239
n
239
ASP
239
A
ILE
240
n
240
ILE
240
A
PRO
241
n
241
PRO
241
A
PHE
242
n
242
PHE
242
A
GLU
243
n
243
GLU
243
A
HIS
244
n
244
HIS
244
A
ASP
245
n
245
ASP
245
A
GLU
246
n
246
GLU
246
A
GLU
247
n
247
GLU
247
A
ILE
248
n
248
ILE
248
A
ILE
249
n
249
ILE
249
A
GLY
250
n
250
GLY
250
A
GLY
251
n
251
GLY
251
A
GLN
252
n
252
GLN
252
A
VAL
253
n
253
VAL
253
A
PHE
254
n
254
PHE
254
A
PHE
255
n
255
PHE
255
A
ARG
256
n
256
ARG
256
A
GLN
257
n
257
GLN
257
A
ARG
258
n
258
ARG
258
A
VAL
259
n
259
VAL
259
A
SER
260
n
260
SER
260
A
SER
261
n
261
SER
261
A
GLU
262
n
262
GLU
262
A
CYS
263
n
263
CYS
263
A
GLN
264
n
264
GLN
264
A
HIS
265
n
265
HIS
265
A
LEU
266
n
266
LEU
266
A
ILE
267
n
267
ILE
267
A
ARG
268
n
268
ARG
268
A
TRP
269
n
269
TRP
269
A
CYS
270
n
270
CYS
270
A
LEU
271
n
271
LEU
271
A
ALA
272
n
272
ALA
272
A
LEU
273
n
273
LEU
273
A
ARG
274
n
274
ARG
274
A
PRO
275
n
275
PRO
275
A
SER
276
n
276
SER
276
A
ASP
277
n
277
ASP
277
A
ARG
278
n
278
ARG
278
A
PRO
279
n
279
PRO
279
A
THR
280
n
280
THR
280
A
PHE
281
n
281
PHE
281
A
GLU
282
n
282
GLU
282
A
GLU
283
n
283
GLU
283
A
ILE
284
n
284
ILE
284
A
GLN
285
n
285
GLN
285
A
ASN
286
n
286
ASN
286
A
HIS
287
n
287
HIS
287
A
PRO
288
n
288
PRO
288
A
TRP
289
n
289
TRP
289
A
MET
290
n
290
MET
290
A
GLN
291
n
291
GLN
291
A
ASP
292
n
292
ASP
292
A
VAL
293
n
293
VAL
293
A
LEU
294
n
294
LEU
294
A
LEU
295
n
295
LEU
295
A
PRO
296
n
296
PRO
296
A
GLN
297
n
297
GLN
297
A
GLU
298
n
298
GLU
298
A
THR
299
n
299
THR
299
A
ALA
300
n
300
ALA
300
A
GLU
301
n
301
GLU
301
A
ILE
302
n
302
ILE
302
A
HIS
303
n
303
HIS
303
A
LEU
304
n
304
LEU
304
A
HIS
305
n
305
HIS
305
A
n
306
306
A
n
307
307
A
n
308
308
A
n
309
309
A
n
310
310
A
n
311
311
A
n
312
312
A
n
313
313
A
n
1
1
B
ARG
2
n
2
ARG
2
B
LYS
3
n
3
LYS
3
B
ARG
4
n
4
ARG
4
B
ARG
5
n
5
ARG
5
B
ARG
6
n
6
ARG
6
B
HIS
7
n
7
HIS
7
B
PRO
8
n
8
PRO
8
B
SER
9
n
9
SER
9
B
GLY
10
n
10
GLY
10
B
n
11
11
B
n
12
12
B
n
13
13
B
n
14
14
B
1.4619
-0.8528
0.5044
1.8419
-0.1738
1.6030
-0.2391
0.2401
0.2212
0.1708
0.1663
0.1225
-0.3557
-0.1680
-0.0000
0.4877
-0.0344
0.0420
0.3640
-0.0012
0.4170
refined
135.4462
2.9832
8.1886
X-RAY DIFFRACTION
0.6277
-0.3958
0.3543
1.8258
0.0678
2.1438
0.0414
0.0401
0.0992
0.0470
0.0681
-0.1724
-0.2366
0.1258
0.0001
0.3031
-0.0581
0.0168
0.2876
0.0149
0.3210
refined
142.9740
-9.0719
3.5832
X-RAY DIFFRACTION
1.4229
0.3880
0.0189
1.7041
0.0813
2.0462
0.1205
0.0832
0.0533
-0.0282
-0.0145
0.1209
-0.1264
-0.2567
-0.0000
0.2807
-0.0069
-0.0071
0.3099
0.0278
0.3041
refined
132.3096
-17.6785
-0.8896
X-RAY DIFFRACTION
1.1140
-0.3944
0.0616
1.3711
0.1027
2.1495
0.0860
0.0467
-0.2990
-0.0043
-0.0501
-0.1130
0.3722
0.1735
-0.0001
0.3053
-0.0153
-0.0169
0.3218
0.0052
0.3001
refined
144.2410
-27.3412
-2.8083
X-RAY DIFFRACTION
1.2108
-0.2350
-0.3418
0.1870
0.0627
0.2271
-0.2739
1.2534
-0.2799
-0.2042
0.1641
0.6519
0.3593
-0.9925
-0.0144
0.5938
0.0495
0.0221
0.5031
0.1269
0.4703
refined
134.0019
-11.2241
-12.8062
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain 'A' and (resid 33 through 96 )
X-RAY DIFFRACTION
2
chain 'A' and (resid 97 through 161 )
X-RAY DIFFRACTION
3
chain 'A' and (resid 162 through 250 )
X-RAY DIFFRACTION
4
chain 'A' and (resid 251 through 305 )
X-RAY DIFFRACTION
5
chain 'B' and (resid 2 through 10 )
author_and_software_defined_assembly
PISA
2
dimeric
none
1390
3
12950
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
PRO
42
A
N
PRO
42
A
O
SER
54
A
O
SER
54
A
N
TYR
53
A
N
TYR
53
A
O
ILE
66
A
O
ILE
66
A
N
LYS
67
A
N
LYS
67
A
O
LEU
118
A
O
LEU
118
A
O
ILE
119
A
O
ILE
119
A
N
LEU
107
A
N
LEU
107
A
N
GLY
78
A
N
GLY
78
A
O
VAL
86
A
O
VAL
86
A
N
GLN
127
A
N
GLN
127
A
O
ILE
175
A
O
ILE
175
A
N
ASP
176
A
N
ASP
176
A
O
GLU
181
A
O
GLU
181
A
N
LEU
164
A
N
LEU
164
A
O
ALA
191
A
O
ALA
191
1
A
CG
PRO
33
A
CG
PRO
33
1
Y
1
A
CD
PRO
33
A
CD
PRO
33
1
Y
1
A
CD1
LEU
34
A
CD1
LEU
34
1
Y
1
A
CD2
LEU
34
A
CD2
LEU
34
1
Y
1
A
CD
GLU
35
A
CD
GLU
35
1
Y
1
A
OE1
GLU
35
A
OE1
GLU
35
1
Y
1
A
OE2
GLU
35
A
OE2
GLU
35
1
Y
1
A
OG
SER
36
A
OG
SER
36
1
Y
1
A
CD
GLN
39
A
CD
GLN
39
1
Y
1
A
OE1
GLN
39
A
OE1
GLN
39
1
Y
1
A
NE2
GLN
39
A
NE2
GLN
39
1
Y
1
A
CD1
ILE
56
A
CD1
ILE
56
1
Y
1
A
CG1
VAL
58
A
CG1
VAL
58
1
Y
1
A
CG2
VAL
58
A
CG2
VAL
58
1
Y
1
A
OG
SER
59
A
OG
SER
59
1
Y
1
A
CG
GLU
70
A
CG
GLU
70
1
Y
1
A
CD
GLU
70
A
CD
GLU
70
1
Y
1
A
OE1
GLU
70
A
OE1
GLU
70
1
Y
1
A
OE2
GLU
70
A
OE2
GLU
70
1
Y
1
A
CG
ARG
73
A
CG
ARG
73
1
Y
1
A
CD
ARG
73
A
CD
ARG
73
1
Y
1
A
NE
ARG
73
A
NE
ARG
73
1
Y
1
A
CZ
ARG
73
A
CZ
ARG
73
1
Y
1
A
NH1
ARG
73
A
NH1
ARG
73
1
Y
1
A
NH2
ARG
73
A
NH2
ARG
73
1
Y
1
A
OG
SER
75
A
OG
SER
75
1
Y
1
A
OD1
ASP
76
A
OD1
ASP
76
1
Y
1
A
OD2
ASP
76
A
OD2
ASP
76
1
Y
1
A
CG
GLU
79
A
CG
GLU
79
1
Y
1
A
CD
GLU
79
A
CD
GLU
79
1
Y
1
A
OE1
GLU
79
A
OE1
GLU
79
1
Y
1
A
OE2
GLU
79
A
OE2
GLU
79
1
Y
1
A
CG
LEU
80
A
CG
LEU
80
1
Y
1
A
CD1
LEU
80
A
CD1
LEU
80
1
Y
1
A
CD2
LEU
80
A
CD2
LEU
80
1
Y
1
A
CG
PRO
81
A
CG
PRO
81
1
Y
1
A
CD
PRO
81
A
CD
PRO
81
1
Y
1
A
CG
ASN
82
A
CG
ASN
82
1
Y
1
A
OD1
ASN
82
A
OD1
ASN
82
1
Y
1
A
ND2
ASN
82
A
ND2
ASN
82
1
Y
1
A
OG1
THR
84
A
OG1
THR
84
1
Y
1
A
CG2
THR
84
A
CG2
THR
84
1
Y
1
A
CE
LYS
94
A
CE
LYS
94
1
Y
1
A
NZ
LYS
94
A
NZ
LYS
94
1
Y
1
A
OG
SER
98
A
OG
SER
98
1
Y
1
A
CG
GLU
124
A
CG
GLU
124
1
Y
1
A
CD
GLU
124
A
CD
GLU
124
1
Y
1
A
OE1
GLU
124
A
OE1
GLU
124
1
Y
1
A
OE2
GLU
124
A
OE2
GLU
124
1
Y
1
A
OD1
ASP
200
A
OD1
ASP
200
1
Y
1
A
OD1
ASP
202
A
OD1
ASP
202
1
Y
1
A
OD2
ASP
202
A
OD2
ASP
202
1
Y
1
A
NH1
ARG
214
A
NH1
ARG
214
1
Y
1
A
NH2
ARG
214
A
NH2
ARG
214
1
Y
1
A
OE1
GLN
252
A
OE1
GLN
252
1
Y
1
A
NE2
GLN
252
A
NE2
GLN
252
1
Y
1
A
CG
ARG
274
A
CG
ARG
274
1
Y
1
A
CD
ARG
274
A
CD
ARG
274
1
Y
1
A
NE
ARG
274
A
NE
ARG
274
1
Y
1
A
CZ
ARG
274
A
CZ
ARG
274
1
Y
1
A
NH1
ARG
274
A
NH1
ARG
274
1
Y
1
A
NH2
ARG
274
A
NH2
ARG
274
1
Y
1
A
CG
GLN
297
A
CG
GLN
297
1
Y
1
A
CD
GLN
297
A
CD
GLN
297
1
Y
1
A
OE1
GLN
297
A
OE1
GLN
297
1
Y
1
A
NE2
GLN
297
A
NE2
GLN
297
1
Y
1
B
CG
LYS
3
B
CG
LYS
3
1
Y
1
B
CD
LYS
3
B
CD
LYS
3
1
Y
1
B
CE
LYS
3
B
CE
LYS
3
1
Y
1
B
NZ
LYS
3
B
NZ
LYS
3
1
Y
1
B
NH1
ARG
5
B
NH1
ARG
5
1
Y
1
B
NH2
ARG
5
B
NH2
ARG
5
1
Y
1
B
O
HIS
7
B
O
HIS
7
1
Y
1
A
C9
8UB
402
D
C9
8UB
1
1
N
1
A
C10
8UB
402
D
C10
8UB
1
1
N
1
A
C11
8UB
402
D
C11
8UB
1
1
N
1
A
C12
8UB
402
D
C12
8UB
1
1
N
1
A
C13
8UB
402
D
C13
8UB
1
1
N
1
A
S1
8UB
402
D
S1
8UB
1
1
N
1
A
MET
1
A
MET
1
1
Y
1
A
LEU
2
A
LEU
2
1
Y
1
A
LEU
3
A
LEU
3
1
Y
1
A
SER
4
A
SER
4
1
Y
1
A
LYS
5
A
LYS
5
1
Y
1
A
ILE
6
A
ILE
6
1
Y
1
A
ASN
7
A
ASN
7
1
Y
1
A
SER
8
A
SER
8
1
Y
1
A
LEU
9
A
LEU
9
1
Y
1
A
ALA
10
A
ALA
10
1
Y
1
A
HIS
11
A
HIS
11
1
Y
1
A
LEU
12
A
LEU
12
1
Y
1
A
ARG
13
A
ARG
13
1
Y
1
A
ALA
14
A
ALA
14
1
Y
1
A
ALA
15
A
ALA
15
1
Y
1
A
PRO
16
A
PRO
16
1
Y
1
A
CYS
17
A
CYS
17
1
Y
1
A
ASN
18
A
ASN
18
1
Y
1
A
ASP
19
A
ASP
19
1
Y
1
A
LEU
20
A
LEU
20
1
Y
1
A
HIS
21
A
HIS
21
1
Y
1
A
ALA
22
A
ALA
22
1
Y
1
A
THR
23
A
THR
23
1
Y
1
A
LYS
24
A
LYS
24
1
Y
1
A
LEU
25
A
LEU
25
1
Y
1
A
ALA
26
A
ALA
26
1
Y
1
A
PRO
27
A
PRO
27
1
Y
1
A
GLY
28
A
GLY
28
1
Y
1
A
LYS
29
A
LYS
29
1
Y
1
A
GLU
30
A
GLU
30
1
Y
1
A
LYS
31
A
LYS
31
1
Y
1
A
GLU
32
A
GLU
32
1
Y
1
A
SER
306
A
SER
306
1
Y
1
A
LEU
307
A
LEU
307
1
Y
1
A
SER
308
A
SER
308
1
Y
1
A
PRO
309
A
PRO
309
1
Y
1
A
GLY
310
A
GLY
310
1
Y
1
A
PRO
311
A
PRO
311
1
Y
1
A
SER
312
A
SER
312
1
Y
1
A
LYS
313
A
LYS
313
1
Y
1
B
ALA
1
B
ALA
1
1
Y
1
B
PRO
11
B
PRO
11
1
Y
1
B
PRO
12
B
PRO
12
1
Y
1
B
THR
13
B
THR
13
1
Y
1
B
ALA
14
B
ALA
14
1
Y
1
A
ASP
60
-157.94
16.37
1
A
PRO
81
-61.02
62.43
1
A
ASN
82
-177.05
-0.38
1
A
ASP
167
-151.37
44.13
1
A
ASP
186
63.42
78.28
0.1941
0.1602
0.1618
1.985
42.664
1529
30585
5.00
99.65
0.20
1
FREE R-VALUE
1.36
MOLECULAR REPLACEMENT
19.77
0.90
1.11
3WE8
1.985
42.664
122
2365
18
0
2225
0.006
2332
0.756
3166
20.816
1375
0.052
338
0.005
424
0.1999
0.1783
2.0493
137
2603
99.00
0.2426
0.2033
2.1226
138
2619
100.00
0.1842
0.1693
2.2076
138
2638
100.00
0.2735
0.2167
2.3080
137
2589
98.00
0.2182
0.1603
2.4297
138
2619
100.00
0.2082
0.1690
2.5819
140
2670
100.00
0.2198
0.1704
2.7812
139
2633
100.00
0.1943
0.1613
3.0610
140
2652
100.00
0.1957
0.1586
3.5038
140
2674
100.00
0.1646
0.1412
4.4137
140
2643
100.00
0.1865
0.1565
42.6737
142
2716
100.00
1.985
50.00
5NDT
30602
0.99
0.050
1
25.56
8.39
99.7
1.985
2.11
5.48
4883
0.95
0.561
1
8.34
99.4
refinement
PHENIX
(1.10.1_2155: ???)
data reduction
XDS
data scaling
XDS
phasing
PHASER
model building
Coot
N
Crystal structure of human Pim-1 kinase in complex with a consensus peptide and fragment like molecule (E)-3-(2-(thiophen-2-yl)vinyl)-3,4-dihydroquinoxalin-2(1H)-one
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
A
PRO
33
A
PRO
33
HELX_P
A
GLN
37
A
GLN
37
1
AA1
5
A
ASP
72
A
ASP
72
HELX_P
A
ILE
74
A
ILE
74
5
AA2
3
A
MET
88
A
MET
88
HELX_P
A
SER
97
A
SER
97
1
AA3
10
A
LEU
129
A
LEU
129
HELX_P
A
GLY
137
A
GLY
137
1
AA4
9
A
GLN
140
A
GLN
140
HELX_P
A
CYS
161
A
CYS
161
1
AA5
22
A
LYS
169
A
LYS
169
HELX_P
A
GLU
171
A
GLU
171
5
AA6
3
A
THR
204
A
THR
204
HELX_P
A
SER
208
A
SER
208
5
AA7
5
A
PRO
209
A
PRO
209
HELX_P
A
HIS
216
A
HIS
216
1
AA8
8
A
HIS
219
A
HIS
219
HELX_P
A
GLY
238
A
GLY
238
1
AA9
20
A
HIS
244
A
HIS
244
HELX_P
A
GLY
251
A
GLY
251
1
AB1
8
A
SER
260
A
SER
260
HELX_P
A
LEU
271
A
LEU
271
1
AB2
12
A
ARG
274
A
ARG
274
HELX_P
A
ARG
278
A
ARG
278
5
AB3
5
A
THR
280
A
THR
280
HELX_P
A
ASN
286
A
ASN
286
1
AB4
7
A
HIS
287
A
HIS
287
HELX_P
A
GLN
291
A
GLN
291
5
AB5
5
A
LEU
295
A
LEU
295
HELX_P
A
LEU
304
A
LEU
304
1
AB6
10
TRANSFERASE
Serine Threonine Kinase, Transferase, proto-oncogene, Fragment, PIM-1, Consensus peptide
A
GLU
124
A
GLU
124
1
A
PRO
125
A
PRO
125
-3.32
PIM1_HUMAN
UNP
1
1
P11309
P11309-2
MLLSKINSLAHLRAAPCNDLHATKLAPGKEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGEL
PNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHN
CGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDI
PFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLSPGPSK
5NDT
PDB
2
1
5NDT
1
313
5NDT
1
313
P11309
A
1
1
313
1
14
5NDT
1
14
5NDT
B
2
1
14
1
ARG
engineered mutation
GLY
250
5NDT
A
P11309
UNP
250
250
5
2
3
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
38
A
TYR
38
A
GLY
47
A
GLY
47
A
GLY
50
A
GLY
50
A
ARG
57
A
ARG
57
A
PRO
63
A
PRO
63
A
GLU
70
A
GLU
70
A
SER
115
A
SER
115
A
GLU
121
A
GLU
121
A
LEU
106
A
LEU
106
A
GLU
111
A
GLU
111
A
TRP
77
A
TRP
77
A
GLU
79
A
GLU
79
A
ARG
85
A
ARG
85
A
PRO
87
A
PRO
87
A
VAL
126
A
VAL
126
A
ASP
128
A
ASP
128
A
ILE
173
A
ILE
173
A
ASP
176
A
ASP
176
A
GLU
181
A
GLU
181
A
LEU
184
A
LEU
184
A
VAL
163
A
VAL
163
A
LEU
164
A
LEU
164
A
ALA
191
A
ALA
191
A
LEU
192
A
LEU
192
binding site for residue GOL A 401
A
GOL
401
Software
6
binding site for residue 8UB A 402
A
8UB
402
Software
8
A
TYR
233
A
TYR
233
6
1_555
A
PRO
241
A
PRO
241
6
1_555
A
GLU
247
A
GLU
247
6
1_555
A
GLN
252
A
GLN
252
6
1_555
A
PHE
254
A
PHE
254
6
1_555
A
ARG
256
A
ARG
256
6
1_555
A
PHE
49
A
PHE
49
8
1_555
A
VAL
52
A
VAL
52
8
1_555
A
ALA
65
A
ALA
65
8
1_555
A
LYS
67
A
LYS
67
8
1_555
A
GLU
121
A
GLU
121
8
1_555
A
LEU
174
A
LEU
174
8
1_555
A
HOH
528
E
HOH
8
1_555
A
HOH
587
E
HOH
8
1_555
170
P 65