0.026918 0.000000 0.000000 0.000000 0.012990 0.000000 0.000000 0.000000 0.006895 0.00000 0.00000 0.00000 Kaczmarska, Z. Freier, R. Marquez, J.A. Macias, M.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 37.150 76.980 145.040 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C10 H15 N2 O8 P 322.208 y THYMIDINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N O N 89 N P N 90 N O N 91 N O N 92 N O N 93 N C N 94 R C N 95 N O N 96 S C N 97 N O N 98 N C N 99 R C Y 100 N N Y 101 N C Y 102 N N Y 103 N C Y 104 N C N 105 N N Y 106 N N Y 107 N C Y 108 N N Y 109 N C N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N O N 125 N P N 126 N O N 127 N O N 128 N O N 129 N C N 130 R C N 131 N O N 132 S C N 133 N O N 134 N C N 135 R C N 136 N N N 137 N C N 138 N O N 139 N N N 140 N C N 141 N N N 142 N C N 143 N C N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N P N 160 N O N 161 N O N 162 N O N 163 N C N 164 R C N 165 N O N 166 S C N 167 N O N 168 N C N 169 R C Y 170 N N Y 171 N C Y 172 N N Y 173 N C N 174 N C N 175 N O N 176 N N N 177 N C N 178 N N N 179 N N Y 180 N C N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N O N 196 N P N 197 N O N 198 N O N 199 N O N 200 N C N 201 R C N 202 N O N 203 S C N 204 N O N 205 N C N 206 R C N 207 N N N 208 N C N 209 N O N 210 N N N 211 N C N 212 N O N 213 N C N 214 N C N 215 N C N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N C N 238 N O N 239 N N N 240 N O N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N C N 258 N O N 259 N O N 260 N O N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N N N 271 N C N 272 N C N 273 N O N 274 N O N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N N N 281 S C N 282 N C N 283 N O N 284 N C Y 285 N C Y 286 N N Y 287 N C Y 288 N C Y 289 N N N 290 N O N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N O N 302 N H N 303 N H N 304 N N N 305 S C N 306 N C N 307 N O N 308 S C N 309 N C N 310 N C N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 N C N 331 N C N 332 N C N 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 N C N 353 N C N 354 N C N 355 N C N 356 N N N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N S N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C Y 403 N C N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 N C N 421 N C N 422 N C N 423 N O N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 N C N 438 N O N 439 N O N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N N N 448 S C N 449 N C N 450 N O N 451 R C N 452 N O N 453 N C N 454 N O N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N H N 463 N H N 464 N N N 465 S C N 466 N C N 467 N O N 468 N C Y 469 N C Y 470 N C Y 471 N C Y 472 N N Y 473 N C Y 474 N C Y 475 N C Y 476 N C Y 477 N C N 478 N O N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N N N 492 S C N 493 N C N 494 N O N 495 N C Y 496 N C Y 497 N C Y 498 N C Y 499 N C Y 500 N C Y 501 N C N 502 N O N 503 N O N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N N N 516 S C N 517 N C N 518 N O N 519 N C N 520 N C N 521 N C N 522 N O N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing Y 106 N sing Y 107 N sing Y 108 N doub N 109 N sing Y 110 N sing Y 111 N sing Y 112 N doub N 113 N sing Y 114 N doub N 115 N sing N 116 N sing Y 117 N sing Y 118 N doub N 119 N sing Y 120 N sing N 121 N sing N 122 N sing N 123 N doub N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing Y 179 N sing Y 180 N sing Y 181 N doub N 182 N sing Y 183 N sing N 184 N sing Y 185 N doub N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N doub N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N doub N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N doub N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N doub N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N doub N 285 N sing N 286 N sing N 287 N sing N 288 N sing Y 289 N sing Y 290 N doub Y 291 N doub N 292 N sing Y 293 N sing N 294 N sing Y 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N doub N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N doub N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N doub N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing Y 397 N doub Y 398 N sing Y 399 N sing N 400 N sing Y 401 N doub N 402 N sing Y 403 N doub N 404 N sing Y 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N doub N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N doub N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N doub N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N doub N 462 N sing N 463 N sing N 464 N sing N 465 N sing Y 466 N doub Y 467 N sing Y 468 N sing N 469 N sing Y 470 N doub Y 471 N sing Y 472 N sing N 473 N sing Y 474 N sing Y 475 N doub N 476 N sing Y 477 N doub N 478 N sing Y 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N doub N 490 N sing N 491 N sing N 492 N sing N 493 N sing Y 494 N doub Y 495 N sing Y 496 N sing N 497 N sing Y 498 N doub N 499 N sing Y 500 N doub N 501 N sing Y 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N doub N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N sing UK Nat Commun 2041-1723 8 2070 2070 10.1038/s41467-017-02054-6 29234012 Structural basis for genome wide recognition of 5-bp GC motifs by SMAD transcription factors. 2017 10.2210/pdb5nm9/pdb pdb_00005nm9 100 1 CCD 2016-11-27 ADSC QUANTUM 315r SINGLE WAVELENGTH M x-ray 1 0.976250 1.0 ID23-1 ESRF 0.976250 SYNCHROTRON ESRF BEAMLINE ID23-1 15985.443 Mothers against decapentaplegic homolog MH1 domain, UNP residues 33-174 2 man polymer 5518.555 DNA (5'-D(P*AP*TP*GP*CP*GP*GP*GP*CP*GP*CP*GP*CP*CP*CP*GP*CP*AP*T)-3') 2 syn polymer 65.409 ZINC ION 2 syn non-polymer 18.015 water 19 nat water Smad4, Mothers against DPP homolog,SMAD family member no no GPGMSASGSGDATLGIVHTLMCHRQGGESENFAKRAVESLVKKLKDKRDELDALITAVTSNGIQQSKCVTIARTLDGRLQ VAGKKGFPHVIYSRIWRWPDLHKNELKHIKLCKFAFDLKLDHVCVNPYHYERVISPGYNVTDI GPGMSASGSGDATLGIVHTLMCHRQGGESENFAKRAVESLVKKLKDKRDELDALITAVTSNGIQQSKCVTIARTLDGRLQ VAGKKGFPHVIYSRIWRWPDLHKNELKHIKLCKFAFDLKLDHVCVNPYHYERVISPGYNVTDI A,B polypeptide(L) no no (DA)(DT)(DG)(DC)(DG)(DG)(DG)(DC)(DG)(DC)(DG)(DC)(DC)(DC)(DG)(DC)(DA)(DT) ATGCGGGCGCGCCCGCAT C,D polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 143 TRIADDRAFT_30731 10228 Trichoplax adhaerens 562 Escherichia coli Biological sequence 1 2.41 48.99 VAPOR DIFFUSION, SITTING DROP 4.8% PEG 4000, 0.1 M sodium acetate pH 4.6 277 -8.437 1 20 C 1 D 18 5.648 C_DA1:DT18_D 1 -10.037 0.305 -0.304 -0.052 -8.028 1 20 C 2 D 17 1.348 C_DT2:DA17_D 2 -12.895 -1.022 0.243 -0.043 -8.026 1 19 C 3 D 16 3.367 C_DG3:DC16_D 3 -10.354 -0.263 -0.183 -0.120 -6.754 1 19 C 4 D 15 -0.471 C_DC4:DG15_D 4 -18.690 -0.117 0.580 -0.067 -9.785 1 19 C 5 D 14 -2.401 C_DG5:DC14_D 5 -11.289 -0.401 -0.152 -0.197 2.205 1 19 C 6 D 13 1.236 C_DG6:DC13_D 6 -11.285 0.186 -0.021 -0.103 -5.563 1 19 C 7 D 12 -1.653 C_DG7:DC12_D 7 -13.146 -0.053 -0.073 -0.214 -6.500 1 19 C 8 D 11 3.141 C_DC8:DG11_D 8 -10.442 0.638 0.079 -0.109 -7.219 1 19 C 9 D 10 -0.981 C_DG9:DC10_D 9 -9.664 0.002 -0.146 -0.096 9.424 1 19 C 10 D 9 -2.843 C_DC10:DG9_D 10 -13.757 0.139 -0.042 -0.283 3.027 1 19 C 11 D 8 -1.237 C_DG11:DC8_D 11 -11.931 -0.616 0.210 -0.271 3.266 1 19 C 12 D 7 -5.446 C_DC12:DG7_D 12 -11.077 0.139 0.045 -0.158 -0.896 1 19 C 13 D 6 -1.248 C_DC13:DG6_D 13 -7.829 0.150 0.049 -0.199 -0.009 1 19 C 14 D 5 0.758 C_DC14:DG5_D 14 -18.861 -0.408 0.100 0.043 4.661 1 19 C 15 D 4 2.129 C_DG15:DC4_D 15 -11.393 0.343 0.142 -0.066 4.874 1 19 C 16 D 3 1.551 C_DC16:DG3_D 16 -20.882 0.178 0.314 -0.008 -7.272 1 20 C 17 D 2 -3.396 C_DA17:DT2_D 17 -13.069 -0.272 0.163 -0.156 3.032 1 20 C 18 D 1 -1.621 C_DT18:DA1_D 18 -11.238 -0.275 0.123 -0.060 3.430 26.797 C C 1 2 -3.858 D D 18 17 3.329 -1.779 -0.642 -0.741 CC_DA1DT2:DA17DT18_DD 1 -4.524 9.815 26.360 -1.120 0.167 3.423 42.734 C C 2 3 -1.368 D D 17 16 3.429 -0.996 0.439 0.852 CC_DT2DG3:DC16DA17_DD 2 1.595 -2.190 42.695 1.274 -0.435 3.414 36.834 C C 3 4 -8.658 D D 16 15 3.356 -5.402 -0.841 0.074 CC_DG3DC4:DG15DC16_DD 3 -8.805 14.112 35.404 0.892 0.068 3.341 35.705 C C 4 5 13.949 D D 15 14 3.347 8.471 0.145 0.352 CC_DC4DG5:DC14DG15_DD 4 2.279 -3.753 34.645 -0.699 0.105 2.995 29.679 C C 5 6 17.987 D D 14 13 3.069 9.048 -0.010 0.300 CC_DG5DG6:DC13DC14_DD 5 -3.784 7.523 28.047 -1.231 -0.740 3.345 36.478 C C 6 7 15.013 D D 13 12 3.357 9.268 -1.057 -0.097 CC_DG6DG7:DC12DC13_DD 6 -5.368 8.695 34.921 -1.501 0.910 3.227 33.960 C C 7 8 5.446 D D 12 11 3.268 3.176 0.255 -0.255 CC_DG7DC8:DG11DC12_DD 7 -0.597 1.024 33.810 -0.943 -0.532 3.307 34.170 C C 8 9 13.474 D D 11 10 3.279 7.850 -0.703 0.554 CC_DC8DG9:DC10DG11_DD 8 0.584 -1.003 33.277 -0.324 1.290 2.668 44.909 C C 9 10 -10.551 D D 10 9 2.999 -8.021 -0.095 1.699 CC_DG9DC10:DG9DC10_DD 9 -0.367 0.483 44.222 2.858 0.095 3.439 35.988 C C 10 11 11.380 D D 9 8 3.377 6.989 0.719 0.616 CC_DC10DG11:DC8DG9_DD 10 0.321 -0.522 35.324 -0.049 -1.116 3.245 34.635 C C 11 12 2.610 D D 8 7 3.264 1.553 -0.193 -0.257 CC_DG11DC12:DG7DC8_DD 11 0.754 -1.267 34.593 -0.670 0.440 3.374 36.693 C C 12 13 12.408 D D 7 6 3.347 7.733 1.089 -0.077 CC_DC12DC13:DG6DG7_DD 12 4.941 -7.928 35.565 -1.227 -1.023 3.182 36.311 C C 13 14 -6.723 D D 6 5 3.299 -4.180 -0.112 0.822 CC_DC13DC14:DG5DG6_DD 13 1.216 -1.956 36.058 1.899 0.349 3.286 43.197 C C 14 15 -1.219 D D 5 4 3.318 -0.897 0.725 2.032 CC_DC14DG15:DC4DG5_DD 14 0.627 -0.851 43.184 2.848 -0.923 3.177 38.394 C C 15 16 -8.193 D D 4 3 3.298 -5.371 -0.085 0.683 CC_DG15DC16:DG3DC4_DD 15 -0.935 1.427 38.019 1.705 0.013 3.501 45.031 C C 16 17 -3.634 D D 3 2 3.603 -2.781 -0.042 1.586 CC_DC16DA17:DT2DG3_DD 16 1.484 -1.938 44.927 2.343 0.200 3.091 27.507 C C 17 18 0.832 D D 2 1 3.097 0.396 -0.022 -0.383 CC_DA17DT18:DA1DT2_DD 17 -0.296 0.623 27.503 -0.898 -0.023 citation chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Database references Data collection Database references Refinement description 1 0 2017-11-15 1 1 2017-12-27 1 2 2024-01-17 _citation.country _citation.journal_abbrev _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _database_2.pdbx_DOI _database_2.pdbx_database_accession Crystal structure of Smad4-MH1 bound to the GGCCG site. Crystal structure of Smad4-MH1 bound to the GGCT site. Crystal structure of Smad4-MH1 bound to the GGCGC site. N PDBE Y PDBE 2017-04-05 REL REL ZN ZINC ION HOH water 9606 Human Homo sapiens sample 1 18 5MEY PDB experimental model ZN 1 3 ZN ZN 201 A ZN 2 3 ZN ZN 201 B HOH 3 4 HOH HOH 301 A HOH 8 4 HOH HOH 302 A HOH 10 4 HOH HOH 303 A HOH 1 4 HOH HOH 304 A HOH 2 4 HOH HOH 305 A HOH 19 4 HOH HOH 306 A HOH 4 4 HOH HOH 307 A HOH 11 4 HOH HOH 308 A HOH 12 4 HOH HOH 309 A HOH 6 4 HOH HOH 301 B HOH 17 4 HOH HOH 302 B HOH 16 4 HOH HOH 303 B HOH 9 4 HOH HOH 304 B HOH 18 4 HOH HOH 305 B HOH 7 4 HOH HOH 306 B HOH 5 4 HOH HOH 307 B HOH 15 4 HOH HOH 308 B HOH 14 4 HOH HOH 309 B HOH 13 4 HOH HOH 101 C n 1 -2 A n 2 -1 A n 3 0 A n 4 1 A n 5 2 A n 6 3 A n 7 4 A n 8 5 A n 9 6 A n 10 7 A n 11 8 A ALA 9 n 12 ALA 9 A THR 10 n 13 THR 10 A LEU 11 n 14 LEU 11 A GLY 12 n 15 GLY 12 A ILE 13 n 16 ILE 13 A VAL 14 n 17 VAL 14 A HIS 15 n 18 HIS 15 A THR 16 n 19 THR 16 A LEU 17 n 20 LEU 17 A MET 18 n 21 MET 18 A CYS 19 n 22 CYS 19 A HIS 20 n 23 HIS 20 A ARG 21 n 24 ARG 21 A GLN 22 n 25 GLN 22 A GLY 23 n 26 GLY 23 A GLY 24 n 27 GLY 24 A GLU 25 n 28 GLU 25 A SER 26 n 29 SER 26 A GLU 27 n 30 GLU 27 A ASN 28 n 31 ASN 28 A PHE 29 n 32 PHE 29 A ALA 30 n 33 ALA 30 A LYS 31 n 34 LYS 31 A ARG 32 n 35 ARG 32 A ALA 33 n 36 ALA 33 A VAL 34 n 37 VAL 34 A GLU 35 n 38 GLU 35 A SER 36 n 39 SER 36 A LEU 37 n 40 LEU 37 A VAL 38 n 41 VAL 38 A LYS 39 n 42 LYS 39 A LYS 40 n 43 LYS 40 A LEU 41 n 44 LEU 41 A LYS 42 n 45 LYS 42 A ASP 43 n 46 ASP 43 A LYS 44 n 47 LYS 44 A ARG 45 n 48 ARG 45 A ASP 46 n 49 ASP 46 A GLU 47 n 50 GLU 47 A LEU 48 n 51 LEU 48 A ASP 49 n 52 ASP 49 A ALA 50 n 53 ALA 50 A LEU 51 n 54 LEU 51 A ILE 52 n 55 ILE 52 A THR 53 n 56 THR 53 A ALA 54 n 57 ALA 54 A VAL 55 n 58 VAL 55 A THR 56 n 59 THR 56 A SER 57 n 60 SER 57 A ASN 58 n 61 ASN 58 A GLY 59 n 62 GLY 59 A ILE 60 n 63 ILE 60 A GLN 61 n 64 GLN 61 A GLN 62 n 65 GLN 62 A SER 63 n 66 SER 63 A LYS 64 n 67 LYS 64 A CYS 65 n 68 CYS 65 A VAL 66 n 69 VAL 66 A THR 67 n 70 THR 67 A ILE 68 n 71 ILE 68 A ALA 69 n 72 ALA 69 A ARG 70 n 73 ARG 70 A THR 71 n 74 THR 71 A LEU 72 n 75 LEU 72 A ASP 73 n 76 ASP 73 A GLY 74 n 77 GLY 74 A ARG 75 n 78 ARG 75 A LEU 76 n 79 LEU 76 A GLN 77 n 80 GLN 77 A VAL 78 n 81 VAL 78 A ALA 79 n 82 ALA 79 A GLY 80 n 83 GLY 80 A LYS 81 n 84 LYS 81 A LYS 82 n 85 LYS 82 A GLY 83 n 86 GLY 83 A PHE 84 n 87 PHE 84 A PRO 85 n 88 PRO 85 A HIS 86 n 89 HIS 86 A VAL 87 n 90 VAL 87 A ILE 88 n 91 ILE 88 A TYR 89 n 92 TYR 89 A SER 90 n 93 SER 90 A ARG 91 n 94 ARG 91 A ILE 92 n 95 ILE 92 A TRP 93 n 96 TRP 93 A ARG 94 n 97 ARG 94 A TRP 95 n 98 TRP 95 A PRO 96 n 99 PRO 96 A ASP 97 n 100 ASP 97 A LEU 98 n 101 LEU 98 A HIS 99 n 102 HIS 99 A LYS 100 n 103 LYS 100 A ASN 101 n 104 ASN 101 A GLU 102 n 105 GLU 102 A LEU 103 n 106 LEU 103 A LYS 104 n 107 LYS 104 A HIS 105 n 108 HIS 105 A ILE 106 n 109 ILE 106 A LYS 107 n 110 LYS 107 A LEU 108 n 111 LEU 108 A CYS 109 n 112 CYS 109 A LYS 110 n 113 LYS 110 A PHE 111 n 114 PHE 111 A ALA 112 n 115 ALA 112 A PHE 113 n 116 PHE 113 A ASP 114 n 117 ASP 114 A LEU 115 n 118 LEU 115 A LYS 116 n 119 LYS 116 A LEU 117 n 120 LEU 117 A ASP 118 n 121 ASP 118 A HIS 119 n 122 HIS 119 A VAL 120 n 123 VAL 120 A CYS 121 n 124 CYS 121 A VAL 122 n 125 VAL 122 A ASN 123 n 126 ASN 123 A PRO 124 n 127 PRO 124 A TYR 125 n 128 TYR 125 A HIS 126 n 129 HIS 126 A TYR 127 n 130 TYR 127 A GLU 128 n 131 GLU 128 A ARG 129 n 132 ARG 129 A VAL 130 n 133 VAL 130 A n 134 131 A n 135 132 A n 136 133 A n 137 134 A n 138 135 A n 139 136 A n 140 137 A n 141 138 A n 142 139 A n 143 140 A n 1 -2 B n 2 -1 B n 3 0 B n 4 1 B n 5 2 B n 6 3 B n 7 4 B n 8 5 B n 9 6 B n 10 7 B ASP 8 n 11 ASP 8 B ALA 9 n 12 ALA 9 B THR 10 n 13 THR 10 B LEU 11 n 14 LEU 11 B GLY 12 n 15 GLY 12 B ILE 13 n 16 ILE 13 B VAL 14 n 17 VAL 14 B HIS 15 n 18 HIS 15 B THR 16 n 19 THR 16 B LEU 17 n 20 LEU 17 B MET 18 n 21 MET 18 B CYS 19 n 22 CYS 19 B HIS 20 n 23 HIS 20 B ARG 21 n 24 ARG 21 B GLN 22 n 25 GLN 22 B GLY 23 n 26 GLY 23 B GLY 24 n 27 GLY 24 B GLU 25 n 28 GLU 25 B SER 26 n 29 SER 26 B GLU 27 n 30 GLU 27 B ASN 28 n 31 ASN 28 B PHE 29 n 32 PHE 29 B ALA 30 n 33 ALA 30 B LYS 31 n 34 LYS 31 B ARG 32 n 35 ARG 32 B ALA 33 n 36 ALA 33 B VAL 34 n 37 VAL 34 B GLU 35 n 38 GLU 35 B SER 36 n 39 SER 36 B LEU 37 n 40 LEU 37 B VAL 38 n 41 VAL 38 B LYS 39 n 42 LYS 39 B LYS 40 n 43 LYS 40 B LEU 41 n 44 LEU 41 B LYS 42 n 45 LYS 42 B ASP 43 n 46 ASP 43 B LYS 44 n 47 LYS 44 B ARG 45 n 48 ARG 45 B ASP 46 n 49 ASP 46 B GLU 47 n 50 GLU 47 B LEU 48 n 51 LEU 48 B ASP 49 n 52 ASP 49 B ALA 50 n 53 ALA 50 B LEU 51 n 54 LEU 51 B ILE 52 n 55 ILE 52 B THR 53 n 56 THR 53 B ALA 54 n 57 ALA 54 B VAL 55 n 58 VAL 55 B THR 56 n 59 THR 56 B SER 57 n 60 SER 57 B ASN 58 n 61 ASN 58 B GLY 59 n 62 GLY 59 B ILE 60 n 63 ILE 60 B GLN 61 n 64 GLN 61 B GLN 62 n 65 GLN 62 B SER 63 n 66 SER 63 B LYS 64 n 67 LYS 64 B CYS 65 n 68 CYS 65 B VAL 66 n 69 VAL 66 B THR 67 n 70 THR 67 B ILE 68 n 71 ILE 68 B ALA 69 n 72 ALA 69 B ARG 70 n 73 ARG 70 B THR 71 n 74 THR 71 B LEU 72 n 75 LEU 72 B ASP 73 n 76 ASP 73 B GLY 74 n 77 GLY 74 B ARG 75 n 78 ARG 75 B LEU 76 n 79 LEU 76 B GLN 77 n 80 GLN 77 B VAL 78 n 81 VAL 78 B ALA 79 n 82 ALA 79 B GLY 80 n 83 GLY 80 B LYS 81 n 84 LYS 81 B LYS 82 n 85 LYS 82 B GLY 83 n 86 GLY 83 B PHE 84 n 87 PHE 84 B PRO 85 n 88 PRO 85 B HIS 86 n 89 HIS 86 B VAL 87 n 90 VAL 87 B ILE 88 n 91 ILE 88 B TYR 89 n 92 TYR 89 B SER 90 n 93 SER 90 B ARG 91 n 94 ARG 91 B ILE 92 n 95 ILE 92 B TRP 93 n 96 TRP 93 B ARG 94 n 97 ARG 94 B TRP 95 n 98 TRP 95 B PRO 96 n 99 PRO 96 B ASP 97 n 100 ASP 97 B LEU 98 n 101 LEU 98 B HIS 99 n 102 HIS 99 B LYS 100 n 103 LYS 100 B ASN 101 n 104 ASN 101 B GLU 102 n 105 GLU 102 B LEU 103 n 106 LEU 103 B LYS 104 n 107 LYS 104 B HIS 105 n 108 HIS 105 B ILE 106 n 109 ILE 106 B LYS 107 n 110 LYS 107 B LEU 108 n 111 LEU 108 B CYS 109 n 112 CYS 109 B LYS 110 n 113 LYS 110 B PHE 111 n 114 PHE 111 B ALA 112 n 115 ALA 112 B PHE 113 n 116 PHE 113 B ASP 114 n 117 ASP 114 B LEU 115 n 118 LEU 115 B LYS 116 n 119 LYS 116 B LEU 117 n 120 LEU 117 B ASP 118 n 121 ASP 118 B HIS 119 n 122 HIS 119 B VAL 120 n 123 VAL 120 B CYS 121 n 124 CYS 121 B VAL 122 n 125 VAL 122 B ASN 123 n 126 ASN 123 B PRO 124 n 127 PRO 124 B TYR 125 n 128 TYR 125 B HIS 126 n 129 HIS 126 B TYR 127 n 130 TYR 127 B GLU 128 n 131 GLU 128 B ARG 129 n 132 ARG 129 B VAL 130 n 133 VAL 130 B n 134 131 B n 135 132 B n 136 133 B n 137 134 B n 138 135 B n 139 136 B n 140 137 B n 141 138 B n 142 139 B n 143 140 B DA 1 n 1 DA 1 C DT 2 n 2 DT 2 C DG 3 n 3 DG 3 C DC 4 n 4 DC 4 C DG 5 n 5 DG 5 C DG 6 n 6 DG 6 C DG 7 n 7 DG 7 C DC 8 n 8 DC 8 C DG 9 n 9 DG 9 C DC 10 n 10 DC 10 C DG 11 n 11 DG 11 C DC 12 n 12 DC 12 C DC 13 n 13 DC 13 C DC 14 n 14 DC 14 C DG 15 n 15 DG 15 C DC 16 n 16 DC 16 C DA 17 n 17 DA 17 C DT 18 n 18 DT 18 C DA 1 n 1 DA 1 D DT 2 n 2 DT 2 D DG 3 n 3 DG 3 D DC 4 n 4 DC 4 D DG 5 n 5 DG 5 D DG 6 n 6 DG 6 D DG 7 n 7 DG 7 D DC 8 n 8 DC 8 D DG 9 n 9 DG 9 D DC 10 n 10 DC 10 D DG 11 n 11 DG 11 D DC 12 n 12 DC 12 D DC 13 n 13 DC 13 D DC 14 n 14 DC 14 D DG 15 n 15 DG 15 D DC 16 n 16 DC 16 D DA 17 n 17 DA 17 D DT 18 n 18 DT 18 D 3.5264 -0.1678 -0.8054 7.7624 1.0652 8.5836 -0.1143 -0.0579 0.2141 0.4163 -0.0368 0.2776 -0.2634 0.1420 0.1511 0.0691 -0.0118 0.0078 -0.2818 -0.0008 -0.1319 refined -13.0932 13.9927 -20.1989 X-RAY DIFFRACTION 3.3699 -0.0324 0.6143 5.7638 0.1007 6.3020 0.1747 -0.1260 -0.1816 0.2771 -0.0234 -0.3941 0.2618 0.0397 -0.1514 0.2634 -0.0135 -0.0776 -0.2852 -0.0008 -0.1360 refined -13.0488 46.0105 -19.9128 X-RAY DIFFRACTION 6.0263 -4.1270 -1.2742 11.8419 2.3195 4.6894 -0.0386 -0.2935 -0.0427 0.7702 0.5280 0.2098 0.9474 0.4699 -0.4894 0.2502 0.0064 0.3040 -0.3651 -0.1277 -0.2904 refined -12.5091 -9.9977 -20.1817 X-RAY DIFFRACTION 6.6782 -3.3319 -1.1480 6.7111 0.1606 3.5649 0.1912 -0.4864 0.4705 1.0260 0.6374 -0.1609 -0.1036 -0.1666 -0.8286 0.5057 -0.0074 0.3040 -0.3469 -0.0687 -0.2042 refined -13.2886 -8.7672 -19.4949 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 { A|* } X-RAY DIFFRACTION 2 { B|* } X-RAY DIFFRACTION 3 { C|* } X-RAY DIFFRACTION 4 { D|* } author_defined_assembly 4 tetrameric author_defined_assembly 4 tetrameric monomer gel filtration A CYS 65 A SG CYS 68 1_555 A ZN 201 E ZN ZN 1_555 A CYS 109 A SG CYS 112 1_555 114.1 A CYS 65 A SG CYS 68 1_555 A ZN 201 E ZN ZN 1_555 A CYS 121 A SG CYS 124 1_555 106.4 A CYS 109 A SG CYS 112 1_555 A ZN 201 E ZN ZN 1_555 A CYS 121 A SG CYS 124 1_555 113.7 A CYS 65 A SG CYS 68 1_555 A ZN 201 E ZN ZN 1_555 A HIS 126 A ND1 HIS 129 1_555 103.0 A CYS 109 A SG CYS 112 1_555 A ZN 201 E ZN ZN 1_555 A HIS 126 A ND1 HIS 129 1_555 108.2 A CYS 121 A SG CYS 124 1_555 A ZN 201 E ZN ZN 1_555 A HIS 126 A ND1 HIS 129 1_555 110.9 B CYS 65 B SG CYS 68 1_555 B ZN 201 F ZN ZN 1_555 B CYS 109 B SG CYS 112 1_555 117.2 B CYS 65 B SG CYS 68 1_555 B ZN 201 F ZN ZN 1_555 B CYS 121 B SG CYS 124 1_555 111.2 B CYS 109 B SG CYS 112 1_555 B ZN 201 F ZN ZN 1_555 B CYS 121 B SG CYS 124 1_555 111.8 B CYS 65 B SG CYS 68 1_555 B ZN 201 F ZN ZN 1_555 B HIS 126 B ND1 HIS 129 1_555 98.8 B CYS 109 B SG CYS 112 1_555 B ZN 201 F ZN ZN 1_555 B HIS 126 B ND1 HIS 129 1_555 108.7 B CYS 121 B SG CYS 124 1_555 B ZN 201 F ZN ZN 1_555 B HIS 126 B ND1 HIS 129 1_555 107.8 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_545 x,y-1,z crystal symmetry operation 0.0000000000 -76.9800000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_565 x,y+1,z crystal symmetry operation 0.0000000000 76.9800000000 0.0000000000 A N ILE 68 A N ILE 71 A O VAL 120 A O VAL 123 A N LEU 76 A N LEU 79 A O GLY 83 A O GLY 86 A N LYS 104 A N LYS 107 A O GLU 128 A O GLU 131 B N ILE 68 B N ILE 71 B O VAL 120 B O VAL 123 B N LEU 76 B N LEU 79 B O GLY 83 B O GLY 86 B N LYS 104 B N LYS 107 B O GLU 128 B O GLU 131 1 A OG1 THR 10 A OG1 THR 13 1 Y 1 A CG2 THR 10 A CG2 THR 13 1 Y 1 A CG LEU 11 A CG LEU 14 1 Y 1 A CD1 LEU 11 A CD1 LEU 14 1 Y 1 A CD2 LEU 11 A CD2 LEU 14 1 Y 1 A CG ARG 45 A CG ARG 48 1 Y 1 A CD ARG 45 A CD ARG 48 1 Y 1 A NE ARG 45 A NE ARG 48 1 Y 1 A CZ ARG 45 A CZ ARG 48 1 Y 1 A NH1 ARG 45 A NH1 ARG 48 1 Y 1 A NH2 ARG 45 A NH2 ARG 48 1 Y 1 A CG GLN 62 A CG GLN 65 1 Y 1 A CD GLN 62 A CD GLN 65 1 Y 1 A OE1 GLN 62 A OE1 GLN 65 1 Y 1 A NE2 GLN 62 A NE2 GLN 65 1 Y 1 A CG LYS 64 A CG LYS 67 1 Y 1 A CD LYS 64 A CD LYS 67 1 Y 1 A CE LYS 64 A CE LYS 67 1 Y 1 A NZ LYS 64 A NZ LYS 67 1 Y 1 A CG LEU 72 A CG LEU 75 1 Y 1 A CD1 LEU 72 A CD1 LEU 75 1 Y 1 A CD2 LEU 72 A CD2 LEU 75 1 Y 1 A CG LYS 81 A CG LYS 84 1 Y 1 A CD LYS 81 A CD LYS 84 1 Y 1 A CE LYS 81 A CE LYS 84 1 Y 1 A NZ LYS 81 A NZ LYS 84 1 Y 1 A CG ASP 97 A CG ASP 100 1 Y 1 A OD1 ASP 97 A OD1 ASP 100 1 Y 1 A OD2 ASP 97 A OD2 ASP 100 1 Y 1 A CG LYS 100 A CG LYS 103 1 Y 1 A CD LYS 100 A CD LYS 103 1 Y 1 A CE LYS 100 A CE LYS 103 1 Y 1 A NZ LYS 100 A NZ LYS 103 1 Y 1 A CG LYS 104 A CG LYS 107 1 Y 1 A CD LYS 104 A CD LYS 107 1 Y 1 A CE LYS 104 A CE LYS 107 1 Y 1 A NZ LYS 104 A NZ LYS 107 1 Y 1 A CG LYS 107 A CG LYS 110 1 Y 1 A CD LYS 107 A CD LYS 110 1 Y 1 A CE LYS 107 A CE LYS 110 1 Y 1 A NZ LYS 107 A NZ LYS 110 1 Y 1 A CG LEU 108 A CG LEU 111 1 Y 1 A CD1 LEU 108 A CD1 LEU 111 1 Y 1 A CD2 LEU 108 A CD2 LEU 111 1 Y 1 B CG LYS 31 B CG LYS 34 1 Y 1 B CD LYS 31 B CD LYS 34 1 Y 1 B CE LYS 31 B CE LYS 34 1 Y 1 B NZ LYS 31 B NZ LYS 34 1 Y 1 B CG ARG 32 B CG ARG 35 1 Y 1 B CD ARG 32 B CD ARG 35 1 Y 1 B NE ARG 32 B NE ARG 35 1 Y 1 B CZ ARG 32 B CZ ARG 35 1 Y 1 B NH1 ARG 32 B NH1 ARG 35 1 Y 1 B NH2 ARG 32 B NH2 ARG 35 1 Y 1 B CG LYS 42 B CG LYS 45 1 Y 1 B CD LYS 42 B CD LYS 45 1 Y 1 B CE LYS 42 B CE LYS 45 1 Y 1 B NZ LYS 42 B NZ LYS 45 1 Y 1 B CG ARG 45 B CG ARG 48 1 Y 1 B CD ARG 45 B CD ARG 48 1 Y 1 B NE ARG 45 B NE ARG 48 1 Y 1 B CZ ARG 45 B CZ ARG 48 1 Y 1 B NH1 ARG 45 B NH1 ARG 48 1 Y 1 B NH2 ARG 45 B NH2 ARG 48 1 Y 1 B CG LEU 72 B CG LEU 75 1 Y 1 B CD1 LEU 72 B CD1 LEU 75 1 Y 1 B CD2 LEU 72 B CD2 LEU 75 1 Y 1 B CG LYS 100 B CG LYS 103 1 Y 1 B CD LYS 100 B CD LYS 103 1 Y 1 B CE LYS 100 B CE LYS 103 1 Y 1 B NZ LYS 100 B NZ LYS 103 1 Y 1 B CG LYS 104 B CG LYS 107 1 Y 1 B CD LYS 104 B CD LYS 107 1 Y 1 B CE LYS 104 B CE LYS 107 1 Y 1 B NZ LYS 104 B NZ LYS 107 1 Y 1 B CG LYS 107 B CG LYS 110 1 Y 1 B CD LYS 107 B CD LYS 110 1 Y 1 B CE LYS 107 B CE LYS 110 1 Y 1 B NZ LYS 107 B NZ LYS 110 1 Y 1 A GLY -2 A GLY 1 1 Y 1 A PRO -1 A PRO 2 1 Y 1 A GLY 0 A GLY 3 1 Y 1 A MET 1 A MET 4 1 Y 1 A SER 2 A SER 5 1 Y 1 A ALA 3 A ALA 6 1 Y 1 A SER 4 A SER 7 1 Y 1 A GLY 5 A GLY 8 1 Y 1 A SER 6 A SER 9 1 Y 1 A GLY 7 A GLY 10 1 Y 1 A ASP 8 A ASP 11 1 Y 1 A ILE 131 A ILE 134 1 Y 1 A SER 132 A SER 135 1 Y 1 A PRO 133 A PRO 136 1 Y 1 A GLY 134 A GLY 137 1 Y 1 A TYR 135 A TYR 138 1 Y 1 A ASN 136 A ASN 139 1 Y 1 A VAL 137 A VAL 140 1 Y 1 A THR 138 A THR 141 1 Y 1 A ASP 139 A ASP 142 1 Y 1 A ILE 140 A ILE 143 1 Y 1 B GLY -2 B GLY 1 1 Y 1 B PRO -1 B PRO 2 1 Y 1 B GLY 0 B GLY 3 1 Y 1 B MET 1 B MET 4 1 Y 1 B SER 2 B SER 5 1 Y 1 B ALA 3 B ALA 6 1 Y 1 B SER 4 B SER 7 1 Y 1 B GLY 5 B GLY 8 1 Y 1 B SER 6 B SER 9 1 Y 1 B GLY 7 B GLY 10 1 Y 1 B ILE 131 B ILE 134 1 Y 1 B SER 132 B SER 135 1 Y 1 B PRO 133 B PRO 136 1 Y 1 B GLY 134 B GLY 137 1 Y 1 B TYR 135 B TYR 138 1 Y 1 B ASN 136 B ASN 139 1 Y 1 B VAL 137 B VAL 140 1 Y 1 B THR 138 B THR 141 1 Y 1 B ASP 139 B ASP 142 1 Y 1 B ILE 140 B ILE 143 1 Y 1 2.27 0.30 108.30 110.57 D D D O4' C1' N1 DC DC DC 16 16 16 N 1 A ARG 94 -132.17 -60.51 1 B ALA 9 74.09 -33.78 1 B ARG 94 -124.69 -59.26 1 B ASN 101 -104.38 46.59 82.04 -8.65960 0.00000 0.00000 1.76980 0.00000 6.88980 0.948 0.914 0.251 0.000 0.221 0.222 2.43 29.46 786 16190 4.850 98.8 0.369 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.390 0.248 0.246 5MEY 0.40 2.43 29.46 19 2656 2 738 1897 0.010 2763 HARMONIC 2.00 1.02 3894 HARMONIC 2.00 844 SINUSOIDAL 2.00 41 HARMONIC 2.00 324 HARMONIC 5.00 2763 HARMONIC 20.00 2 SEMIHARMONIC 5.00 2.76 22.82 364 SEMIHARMONIC 5.00 2750 SEMIHARMONIC 4.00 0.233 0.000 0.228 0.228 2.60 122 2772 2894 8 4.22 99.97 77.62 5NM9 1 2.43 2.44 0.8 204 1 4.8 100 refinement BUSTER 2.10.2 data reduction XDS data scaling XSCALE phasing PHASER N Crystal structure of the placozoa Trichoplax adhaerens Smad4-MH1 bound to the GGCGC site. 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 4 N N 4 N N 4 N N A ALA 9 A ALA 12 HELX_P A CYS 19 A CYS 22 1 AA1 11 A SER 26 A SER 29 HELX_P A LEU 41 A LEU 44 1 AA2 16 A LYS 44 A LYS 47 HELX_P A SER 57 A SER 60 1 AA3 14 A PHE 84 A PHE 87 HELX_P A ARG 94 A ARG 97 1 AA4 11 A ALA 112 A ALA 115 HELX_P A LYS 116 A LYS 119 5 AA5 5 A ASN 123 A ASN 126 HELX_P A TYR 125 A TYR 128 5 AA6 3 B ALA 9 B ALA 12 HELX_P B HIS 20 B HIS 23 1 AA7 12 B SER 26 B SER 29 HELX_P B LEU 41 B LEU 44 1 AA8 16 B LYS 44 B LYS 47 HELX_P B SER 57 B SER 60 1 AA9 14 B PHE 84 B PHE 87 HELX_P B ARG 94 B ARG 97 1 AB1 11 B ALA 112 B ALA 115 HELX_P B LYS 116 B LYS 119 5 AB2 5 B ASN 123 B ASN 126 HELX_P B TYR 125 B TYR 128 5 AB3 3 metalc 2.136 A CYS 65 A SG CYS 68 1_555 A ZN 201 E ZN ZN 1_555 metalc 2.318 A CYS 109 A SG CYS 112 1_555 A ZN 201 E ZN ZN 1_555 metalc 2.524 A CYS 121 A SG CYS 124 1_555 A ZN 201 E ZN ZN 1_555 metalc 2.151 A HIS 126 A ND1 HIS 129 1_555 A ZN 201 E ZN ZN 1_555 metalc 2.160 B CYS 65 B SG CYS 68 1_555 B ZN 201 F ZN ZN 1_555 metalc 2.231 B CYS 109 B SG CYS 112 1_555 B ZN 201 F ZN ZN 1_555 metalc 2.350 B CYS 121 B SG CYS 124 1_555 B ZN 201 F ZN ZN 1_555 metalc 2.225 B HIS 126 B ND1 HIS 129 1_555 B ZN 201 F ZN ZN 1_555 hydrog WATSON-CRICK C DA 1 C N1 DA 1 1_555 D DT 18 D N3 DT 18 1_555 hydrog WATSON-CRICK C DA 1 C N6 DA 1 1_555 D DT 18 D O4 DT 18 1_555 hydrog WATSON-CRICK C DT 2 C N3 DT 2 1_555 D DA 17 D N1 DA 17 1_555 hydrog WATSON-CRICK C DT 2 C O4 DT 2 1_555 D DA 17 D N6 DA 17 1_555 hydrog WATSON-CRICK C DG 3 C N1 DG 3 1_555 D DC 16 D N3 DC 16 1_555 hydrog WATSON-CRICK C DG 3 C N2 DG 3 1_555 D DC 16 D O2 DC 16 1_555 hydrog WATSON-CRICK C DG 3 C O6 DG 3 1_555 D DC 16 D N4 DC 16 1_555 hydrog WATSON-CRICK C DC 4 C N3 DC 4 1_555 D DG 15 D N1 DG 15 1_555 hydrog WATSON-CRICK C DC 4 C N4 DC 4 1_555 D DG 15 D O6 DG 15 1_555 hydrog WATSON-CRICK C DC 4 C O2 DC 4 1_555 D DG 15 D N2 DG 15 1_555 hydrog WATSON-CRICK C DG 5 C N1 DG 5 1_555 D DC 14 D N3 DC 14 1_555 hydrog WATSON-CRICK C DG 5 C N2 DG 5 1_555 D DC 14 D O2 DC 14 1_555 hydrog WATSON-CRICK C DG 5 C O6 DG 5 1_555 D DC 14 D N4 DC 14 1_555 hydrog WATSON-CRICK C DG 6 C N1 DG 6 1_555 D DC 13 D N3 DC 13 1_555 hydrog WATSON-CRICK C DG 6 C N2 DG 6 1_555 D DC 13 D O2 DC 13 1_555 hydrog WATSON-CRICK C DG 6 C O6 DG 6 1_555 D DC 13 D N4 DC 13 1_555 hydrog WATSON-CRICK C DG 7 C N1 DG 7 1_555 D DC 12 D N3 DC 12 1_555 hydrog WATSON-CRICK C DG 7 C N2 DG 7 1_555 D DC 12 D O2 DC 12 1_555 hydrog WATSON-CRICK C DG 7 C O6 DG 7 1_555 D DC 12 D N4 DC 12 1_555 hydrog WATSON-CRICK C DC 8 C N3 DC 8 1_555 D DG 11 D N1 DG 11 1_555 hydrog WATSON-CRICK C DC 8 C N4 DC 8 1_555 D DG 11 D O6 DG 11 1_555 hydrog WATSON-CRICK C DC 8 C O2 DC 8 1_555 D DG 11 D N2 DG 11 1_555 hydrog WATSON-CRICK C DG 9 C N1 DG 9 1_555 D DC 10 D N3 DC 10 1_555 hydrog WATSON-CRICK C DG 9 C N2 DG 9 1_555 D DC 10 D O2 DC 10 1_555 hydrog WATSON-CRICK C DG 9 C O6 DG 9 1_555 D DC 10 D N4 DC 10 1_555 hydrog WATSON-CRICK C DC 10 C N3 DC 10 1_555 D DG 9 D N1 DG 9 1_555 hydrog WATSON-CRICK C DC 10 C N4 DC 10 1_555 D DG 9 D O6 DG 9 1_555 hydrog WATSON-CRICK C DC 10 C O2 DC 10 1_555 D DG 9 D N2 DG 9 1_555 hydrog WATSON-CRICK C DG 11 C N1 DG 11 1_555 D DC 8 D N3 DC 8 1_555 hydrog WATSON-CRICK C DG 11 C N2 DG 11 1_555 D DC 8 D O2 DC 8 1_555 hydrog WATSON-CRICK C DG 11 C O6 DG 11 1_555 D DC 8 D N4 DC 8 1_555 hydrog WATSON-CRICK C DC 12 C N3 DC 12 1_555 D DG 7 D N1 DG 7 1_555 hydrog WATSON-CRICK C DC 12 C N4 DC 12 1_555 D DG 7 D O6 DG 7 1_555 hydrog WATSON-CRICK C DC 12 C O2 DC 12 1_555 D DG 7 D N2 DG 7 1_555 hydrog WATSON-CRICK C DC 13 C N3 DC 13 1_555 D DG 6 D N1 DG 6 1_555 hydrog WATSON-CRICK C DC 13 C N4 DC 13 1_555 D DG 6 D O6 DG 6 1_555 hydrog WATSON-CRICK C DC 13 C O2 DC 13 1_555 D DG 6 D N2 DG 6 1_555 hydrog WATSON-CRICK C DC 14 C N3 DC 14 1_555 D DG 5 D N1 DG 5 1_555 hydrog WATSON-CRICK C DC 14 C N4 DC 14 1_555 D DG 5 D O6 DG 5 1_555 hydrog WATSON-CRICK C DC 14 C O2 DC 14 1_555 D DG 5 D N2 DG 5 1_555 hydrog WATSON-CRICK C DG 15 C N1 DG 15 1_555 D DC 4 D N3 DC 4 1_555 hydrog WATSON-CRICK C DG 15 C N2 DG 15 1_555 D DC 4 D O2 DC 4 1_555 hydrog WATSON-CRICK C DG 15 C O6 DG 15 1_555 D DC 4 D N4 DC 4 1_555 hydrog WATSON-CRICK C DC 16 C N3 DC 16 1_555 D DG 3 D N1 DG 3 1_555 hydrog WATSON-CRICK C DC 16 C N4 DC 16 1_555 D DG 3 D O6 DG 3 1_555 hydrog WATSON-CRICK C DC 16 C O2 DC 16 1_555 D DG 3 D N2 DG 3 1_555 hydrog WATSON-CRICK C DA 17 C N1 DA 17 1_555 D DT 2 D N3 DT 2 1_555 hydrog WATSON-CRICK C DA 17 C N6 DA 17 1_555 D DT 2 D O4 DT 2 1_555 hydrog WATSON-CRICK C DT 18 C N3 DT 18 1_555 D DA 1 D N1 DA 1 1_555 hydrog WATSON-CRICK C DT 18 C O4 DT 18 1_555 D DA 1 D N6 DA 1 1_555 TRANSCRIPTION Smads, transcription factor, DNA complex, transcription B3S7S5_TRIAD UNP 1 1 B3S7S5 MSASGSGDATLGIVHTLMCHRQGGESENFAKRAVESLVKKLKDKRDELDALITAVTSNGIQQSKCVTIARTLDGRLQVAG KKGFPHVIYSRIWRWPDLHKNELKHIKLCKFAFDLKLDHVCVNPYHYERVISPGYNVTDI 5NM9 PDB 2 1 5NM9 1 140 5NM9 1 140 B3S7S5 A 1 4 143 1 140 5NM9 1 140 B3S7S5 B 1 4 143 1 18 5NM9 1 18 5NM9 C 2 1 18 1 18 5NM9 1 18 5NM9 D 2 1 18 1 expression tag GLY -2 5NM9 A B3S7S5 UNP 1 1 expression tag PRO -1 5NM9 A B3S7S5 UNP 2 1 expression tag GLY 0 5NM9 A B3S7S5 UNP 3 2 expression tag GLY -2 5NM9 B B3S7S5 UNP 1 2 expression tag PRO -1 5NM9 B B3S7S5 UNP 2 2 expression tag GLY 0 5NM9 B B3S7S5 UNP 3 2 2 2 2 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 67 A THR 70 A ALA 69 A ALA 72 A HIS 119 A HIS 122 A CYS 121 A CYS 124 A LEU 76 A LEU 79 A VAL 78 A VAL 81 A LYS 81 A LYS 84 A GLY 83 A GLY 86 A LEU 103 A LEU 106 A HIS 105 A HIS 108 A TYR 127 A TYR 130 A ARG 129 A ARG 132 B THR 67 B THR 70 B ALA 69 B ALA 72 B HIS 119 B HIS 122 B CYS 121 B CYS 124 B LEU 76 B LEU 79 B VAL 78 B VAL 81 B LYS 81 B LYS 84 B GLY 83 B GLY 86 B LEU 103 B LEU 106 B HIS 105 B HIS 108 B TYR 127 B TYR 130 B ARG 129 B ARG 132 binding site for residue ZN A 201 A ZN 201 Software 4 binding site for residue ZN B 201 B ZN 201 Software 4 A CYS 65 A CYS 68 4 1_555 A CYS 109 A CYS 112 4 1_555 A CYS 121 A CYS 124 4 1_555 A HIS 126 A HIS 129 4 1_555 B CYS 65 B CYS 68 4 1_555 B CYS 109 B CYS 112 4 1_555 B CYS 121 B CYS 124 4 1_555 B HIS 126 B HIS 129 4 1_555 19 P 21 21 21