0.006413 0.000000 0.000000 0.000000 0.006413 0.000000 0.000000 0.000000 0.016258 0.00000 0.00000 0.00000 Vasiliauskaite, I. Rey, F.A. Krey, T. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 90.00 90.00 155.936 155.936 61.508 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US MBio 2150-7511 8 10.1128/mBio.00382-17 28512091 Conformational Flexibility in the Immunoglobulin-Like Domain of the Hepatitis C Virus Glycoprotein E2. 2017 100 1 PIXEL 2013-02-11 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 0.98011 1.0 X06SA SLS 0.98011 SYNCHROTRON SLS BEAMLINE X06SA 30376.385 Single chain variable fragment of the non-neutralizing antibody DAO5 2 man polymer 1420.544 Epitope peptide 2 syn polymer 18.015 water 269 nat water no no AMREVQLQQSGPELVKPGASLKISCKTSGYTFTDFTFHWVKLSHGPSLEWIGTIKPSNGDTAYNQKFKGKATLSVDKSAS TAHIEFRSLTSEDSAVYFCARFGGSYPYAMDYWGQGTSVIVSSGTGGSGGGGSGGGGSGGGASDIVLTQSPATLSVTPGD RVSLSCRASQGIYNYVHWFQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVESEDFGMYFCQQTNKWPLT FGAGTKLELKAAADDDDKAGWSHPQFEKGGGSGGGSGGGSWSHPQFEK AMREVQLQQSGPELVKPGASLKISCKTSGYTFTDFTFHWVKLSHGPSLEWIGTIKPSNGDTAYNQKFKGKATLSVDKSAS TAHIEFRSLTSEDSAVYFCARFGGSYPYAMDYWGQGTSVIVSSGTGGSGGGGSGGGGSGGGASDIVLTQSPATLSVTPGD RVSLSCRASQGIYNYVHWFQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVESEDFGMYFCQQTNKWPLT FGAGTKLELKAAADDDDKAGWSHPQFEKGGGSGGGSGGGSWSHPQFEK A,B polypeptide(L) no no WGENETDVMLLN WGENETDVMLLN E,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 288 10090 Mus musculus Schneider 2 7227 Drosophila melanogaster plasmid Biological sequence pMT-Strep-scFv 1 2.94 58.16 VAPOR DIFFUSION, HANGING DROP 6.5 100mM MES, 28% PEG 400, 100mM Sodium acetate 293 repository Initial release 1 0 2017-05-24 N PDBE Y PDBE 2017-04-16 REL REL HOH water 11103 Hepatitis C virus sample 1 12 HOH 249 3 HOH HOH 301 A HOH 335 3 HOH HOH 302 A HOH 71 3 HOH HOH 303 A HOH 62 3 HOH HOH 304 A HOH 58 3 HOH HOH 305 A HOH 269 3 HOH HOH 306 A HOH 162 3 HOH HOH 307 A HOH 163 3 HOH HOH 308 A HOH 3 3 HOH HOH 309 A HOH 14 3 HOH HOH 310 A HOH 166 3 HOH HOH 311 A HOH 225 3 HOH HOH 312 A HOH 207 3 HOH HOH 313 A HOH 399 3 HOH HOH 314 A HOH 237 3 HOH HOH 315 A HOH 27 3 HOH HOH 316 A HOH 310 3 HOH HOH 317 A HOH 137 3 HOH HOH 318 A HOH 280 3 HOH HOH 319 A HOH 4 3 HOH HOH 320 A HOH 336 3 HOH HOH 321 A HOH 9 3 HOH HOH 322 A HOH 293 3 HOH HOH 323 A HOH 81 3 HOH HOH 324 A HOH 246 3 HOH HOH 325 A HOH 181 3 HOH HOH 326 A HOH 295 3 HOH HOH 327 A HOH 329 3 HOH HOH 328 A HOH 377 3 HOH HOH 329 A HOH 308 3 HOH HOH 330 A HOH 60 3 HOH HOH 331 A HOH 171 3 HOH HOH 332 A HOH 43 3 HOH HOH 333 A HOH 17 3 HOH HOH 334 A HOH 85 3 HOH HOH 335 A HOH 385 3 HOH HOH 336 A HOH 235 3 HOH HOH 337 A HOH 284 3 HOH HOH 338 A HOH 7 3 HOH HOH 339 A HOH 11 3 HOH HOH 340 A HOH 46 3 HOH HOH 341 A HOH 371 3 HOH HOH 342 A HOH 228 3 HOH HOH 343 A HOH 33 3 HOH HOH 344 A HOH 34 3 HOH HOH 345 A HOH 239 3 HOH HOH 346 A HOH 397 3 HOH HOH 347 A HOH 115 3 HOH HOH 348 A HOH 193 3 HOH HOH 349 A HOH 134 3 HOH HOH 350 A HOH 334 3 HOH HOH 351 A HOH 21 3 HOH HOH 352 A HOH 286 3 HOH HOH 353 A HOH 164 3 HOH HOH 354 A HOH 291 3 HOH HOH 355 A HOH 161 3 HOH HOH 356 A HOH 358 3 HOH HOH 357 A HOH 368 3 HOH HOH 358 A HOH 130 3 HOH HOH 359 A HOH 384 3 HOH HOH 360 A HOH 160 3 HOH HOH 361 A HOH 272 3 HOH HOH 362 A HOH 156 3 HOH HOH 363 A HOH 389 3 HOH HOH 364 A HOH 173 3 HOH HOH 365 A HOH 136 3 HOH HOH 366 A HOH 292 3 HOH HOH 367 A HOH 6 3 HOH HOH 368 A HOH 378 3 HOH HOH 369 A HOH 220 3 HOH HOH 370 A HOH 165 3 HOH HOH 371 A HOH 19 3 HOH HOH 372 A HOH 135 3 HOH HOH 373 A HOH 28 3 HOH HOH 374 A HOH 266 3 HOH HOH 375 A HOH 133 3 HOH HOH 376 A HOH 199 3 HOH HOH 377 A HOH 10 3 HOH HOH 378 A HOH 393 3 HOH HOH 379 A HOH 285 3 HOH HOH 380 A HOH 202 3 HOH HOH 381 A HOH 178 3 HOH HOH 382 A HOH 254 3 HOH HOH 383 A HOH 355 3 HOH HOH 384 A HOH 398 3 HOH HOH 385 A HOH 52 3 HOH HOH 386 A HOH 45 3 HOH HOH 387 A HOH 82 3 HOH HOH 388 A HOH 131 3 HOH HOH 389 A HOH 243 3 HOH HOH 390 A HOH 372 3 HOH HOH 391 A HOH 175 3 HOH HOH 392 A HOH 23 3 HOH HOH 393 A HOH 283 3 HOH HOH 394 A HOH 189 3 HOH HOH 395 A HOH 357 3 HOH HOH 396 A HOH 364 3 HOH HOH 397 A HOH 311 3 HOH HOH 398 A HOH 307 3 HOH HOH 399 A HOH 273 3 HOH HOH 400 A HOH 22 3 HOH HOH 401 A HOH 250 3 HOH HOH 402 A HOH 221 3 HOH HOH 403 A HOH 229 3 HOH HOH 404 A HOH 294 3 HOH HOH 405 A HOH 101 3 HOH HOH 406 A HOH 132 3 HOH HOH 407 A HOH 296 3 HOH HOH 408 A HOH 184 3 HOH HOH 409 A HOH 277 3 HOH HOH 410 A HOH 174 3 HOH HOH 411 A HOH 38 3 HOH HOH 412 A HOH 83 3 HOH HOH 413 A HOH 179 3 HOH HOH 414 A HOH 110 3 HOH HOH 415 A HOH 340 3 HOH HOH 416 A HOH 111 3 HOH HOH 417 A HOH 375 3 HOH HOH 418 A HOH 306 3 HOH HOH 419 A HOH 255 3 HOH HOH 420 A HOH 74 3 HOH HOH 421 A HOH 297 3 HOH HOH 422 A HOH 187 3 HOH HOH 423 A HOH 309 3 HOH HOH 424 A HOH 66 3 HOH HOH 425 A HOH 356 3 HOH HOH 426 A HOH 188 3 HOH HOH 427 A HOH 185 3 HOH HOH 428 A HOH 253 3 HOH HOH 429 A HOH 50 3 HOH HOH 430 A HOH 256 3 HOH HOH 431 A HOH 391 3 HOH HOH 301 B HOH 350 3 HOH HOH 302 B HOH 59 3 HOH HOH 303 B HOH 270 3 HOH HOH 304 B HOH 15 3 HOH HOH 305 B HOH 208 3 HOH HOH 306 B HOH 141 3 HOH HOH 307 B HOH 365 3 HOH HOH 308 B HOH 338 3 HOH HOH 309 B HOH 223 3 HOH HOH 310 B HOH 198 3 HOH HOH 311 B HOH 252 3 HOH HOH 312 B HOH 210 3 HOH HOH 313 B HOH 366 3 HOH HOH 314 B HOH 271 3 HOH HOH 315 B HOH 118 3 HOH HOH 316 B HOH 204 3 HOH HOH 317 B HOH 218 3 HOH HOH 318 B HOH 61 3 HOH HOH 319 B HOH 392 3 HOH HOH 320 B HOH 382 3 HOH HOH 321 B HOH 192 3 HOH HOH 322 B HOH 282 3 HOH HOH 323 B HOH 298 3 HOH HOH 324 B HOH 278 3 HOH HOH 325 B HOH 12 3 HOH HOH 326 B HOH 194 3 HOH HOH 327 B HOH 216 3 HOH HOH 328 B HOH 91 3 HOH HOH 329 B HOH 275 3 HOH HOH 330 B HOH 230 3 HOH HOH 331 B HOH 32 3 HOH HOH 332 B HOH 31 3 HOH HOH 333 B HOH 63 3 HOH HOH 334 B HOH 342 3 HOH HOH 335 B HOH 1 3 HOH HOH 336 B HOH 222 3 HOH HOH 337 B HOH 394 3 HOH HOH 338 B HOH 26 3 HOH HOH 339 B HOH 347 3 HOH HOH 340 B HOH 265 3 HOH HOH 341 B HOH 233 3 HOH HOH 342 B HOH 211 3 HOH HOH 343 B HOH 143 3 HOH HOH 344 B HOH 96 3 HOH HOH 345 B HOH 219 3 HOH HOH 346 B HOH 226 3 HOH HOH 347 B HOH 236 3 HOH HOH 348 B HOH 241 3 HOH HOH 349 B HOH 200 3 HOH HOH 350 B HOH 381 3 HOH HOH 351 B HOH 238 3 HOH HOH 352 B HOH 177 3 HOH HOH 353 B HOH 18 3 HOH HOH 354 B HOH 2 3 HOH HOH 355 B HOH 167 3 HOH HOH 356 B HOH 30 3 HOH HOH 357 B HOH 215 3 HOH HOH 358 B HOH 348 3 HOH HOH 359 B HOH 395 3 HOH HOH 360 B HOH 234 3 HOH HOH 361 B HOH 195 3 HOH HOH 362 B HOH 232 3 HOH HOH 363 B HOH 287 3 HOH HOH 364 B HOH 209 3 HOH HOH 365 B HOH 201 3 HOH HOH 366 B HOH 251 3 HOH HOH 367 B HOH 390 3 HOH HOH 368 B HOH 224 3 HOH HOH 369 B HOH 343 3 HOH HOH 370 B HOH 182 3 HOH HOH 371 B HOH 339 3 HOH HOH 372 B HOH 268 3 HOH HOH 373 B HOH 349 3 HOH HOH 374 B HOH 49 3 HOH HOH 375 B HOH 16 3 HOH HOH 376 B HOH 346 3 HOH HOH 377 B HOH 80 3 HOH HOH 378 B HOH 351 3 HOH HOH 379 B HOH 40 3 HOH HOH 380 B HOH 400 3 HOH HOH 381 B HOH 86 3 HOH HOH 382 B HOH 276 3 HOH HOH 383 B HOH 299 3 HOH HOH 384 B HOH 362 3 HOH HOH 385 B HOH 344 3 HOH HOH 386 B HOH 24 3 HOH HOH 387 B HOH 97 3 HOH HOH 388 B HOH 213 3 HOH HOH 389 B HOH 290 3 HOH HOH 390 B HOH 39 3 HOH HOH 391 B HOH 25 3 HOH HOH 392 B HOH 37 3 HOH HOH 393 B HOH 139 3 HOH HOH 394 B HOH 337 3 HOH HOH 395 B HOH 206 3 HOH HOH 396 B HOH 20 3 HOH HOH 397 B HOH 140 3 HOH HOH 398 B HOH 279 3 HOH HOH 399 B HOH 36 3 HOH HOH 400 B HOH 124 3 HOH HOH 401 B HOH 203 3 HOH HOH 402 B HOH 8 3 HOH HOH 403 B HOH 103 3 HOH HOH 404 B HOH 345 3 HOH HOH 405 B HOH 104 3 HOH HOH 406 B HOH 240 3 HOH HOH 407 B HOH 98 3 HOH HOH 408 B HOH 48 3 HOH HOH 409 B HOH 289 3 HOH HOH 410 B HOH 245 3 HOH HOH 411 B HOH 247 3 HOH HOH 412 B HOH 113 3 HOH HOH 413 B HOH 65 3 HOH HOH 414 B HOH 47 3 HOH HOH 415 B HOH 69 3 HOH HOH 416 B HOH 90 3 HOH HOH 417 B HOH 120 3 HOH HOH 418 B HOH 396 3 HOH HOH 419 B HOH 100 3 HOH HOH 420 B HOH 380 3 HOH HOH 421 B HOH 359 3 HOH HOH 422 B HOH 242 3 HOH HOH 423 B HOH 352 3 HOH HOH 424 B HOH 360 3 HOH HOH 425 B HOH 353 3 HOH HOH 426 B HOH 244 3 HOH HOH 601 E HOH 274 3 HOH HOH 602 E HOH 388 3 HOH HOH 603 E HOH 331 3 HOH HOH 604 E HOH 197 3 HOH HOH 605 E HOH 196 3 HOH HOH 606 E HOH 330 3 HOH HOH 607 E HOH 128 3 HOH HOH 601 D HOH 129 3 HOH HOH 602 D HOH 127 3 HOH HOH 603 D HOH 126 3 HOH HOH 604 D HOH 333 3 HOH HOH 605 D n 1 -2 A n 2 -1 A n 3 0 A GLU 1 n 4 GLU 1 A VAL 2 n 5 VAL 2 A GLN 3 n 6 GLN 3 A LEU 4 n 7 LEU 4 A GLN 5 n 8 GLN 5 A GLN 6 n 9 GLN 6 A SER 7 n 10 SER 7 A GLY 8 n 11 GLY 8 A PRO 9 n 12 PRO 9 A GLU 10 n 13 GLU 10 A LEU 11 n 14 LEU 11 A VAL 12 n 15 VAL 12 A LYS 13 n 16 LYS 13 A PRO 14 n 17 PRO 14 A GLY 15 n 18 GLY 15 A ALA 16 n 19 ALA 16 A SER 17 n 20 SER 17 A LEU 18 n 21 LEU 18 A LYS 19 n 22 LYS 19 A ILE 20 n 23 ILE 20 A SER 21 n 24 SER 21 A CYS 22 n 25 CYS 22 A LYS 23 n 26 LYS 23 A THR 24 n 27 THR 24 A SER 25 n 28 SER 25 A GLY 26 n 29 GLY 26 A TYR 27 n 30 TYR 27 A THR 28 n 31 THR 28 A PHE 29 n 32 PHE 29 A THR 30 n 33 THR 30 A ASP 31 n 34 ASP 31 A PHE 32 n 35 PHE 32 A THR 33 n 36 THR 33 A PHE 34 n 37 PHE 34 A HIS 35 n 38 HIS 35 A TRP 36 n 39 TRP 36 A VAL 37 n 40 VAL 37 A LYS 38 n 41 LYS 38 A LEU 39 n 42 LEU 39 A SER 40 n 43 SER 40 A HIS 41 n 44 HIS 41 A GLY 42 n 45 GLY 42 A PRO 43 n 46 PRO 43 A SER 44 n 47 SER 44 A LEU 45 n 48 LEU 45 A GLU 46 n 49 GLU 46 A TRP 47 n 50 TRP 47 A ILE 48 n 51 ILE 48 A GLY 49 n 52 GLY 49 A THR 50 n 53 THR 50 A ILE 51 n 54 ILE 51 A LYS 52 n 55 LYS 52 A PRO 53 n 56 PRO 53 A SER 54 n 57 SER 54 A ASN 55 n 58 ASN 55 A GLY 56 n 59 GLY 56 A ASP 57 n 60 ASP 57 A THR 58 n 61 THR 58 A ALA 59 n 62 ALA 59 A TYR 60 n 63 TYR 60 A ASN 61 n 64 ASN 61 A GLN 62 n 65 GLN 62 A LYS 63 n 66 LYS 63 A PHE 64 n 67 PHE 64 A LYS 65 n 68 LYS 65 A GLY 66 n 69 GLY 66 A LYS 67 n 70 LYS 67 A ALA 68 n 71 ALA 68 A THR 69 n 72 THR 69 A LEU 70 n 73 LEU 70 A SER 71 n 74 SER 71 A VAL 72 n 75 VAL 72 A ASP 73 n 76 ASP 73 A LYS 74 n 77 LYS 74 A SER 75 n 78 SER 75 A ALA 76 n 79 ALA 76 A SER 77 n 80 SER 77 A THR 78 n 81 THR 78 A ALA 79 n 82 ALA 79 A HIS 80 n 83 HIS 80 A ILE 81 n 84 ILE 81 A GLU 82 n 85 GLU 82 A PHE 83 n 86 PHE 83 A ARG 84 n 87 ARG 84 A SER 85 n 88 SER 85 A LEU 86 n 89 LEU 86 A THR 87 n 90 THR 87 A SER 88 n 91 SER 88 A GLU 89 n 92 GLU 89 A ASP 90 n 93 ASP 90 A SER 91 n 94 SER 91 A ALA 92 n 95 ALA 92 A VAL 93 n 96 VAL 93 A TYR 94 n 97 TYR 94 A PHE 95 n 98 PHE 95 A CYS 96 n 99 CYS 96 A ALA 97 n 100 ALA 97 A ARG 98 n 101 ARG 98 A PHE 99 n 102 PHE 99 A GLY 100 n 103 GLY 100 A GLY 101 n 104 GLY 101 A SER 102 n 105 SER 102 A TYR 103 n 106 TYR 103 A PRO 104 n 107 PRO 104 A TYR 105 n 108 TYR 105 A ALA 106 n 109 ALA 106 A MET 107 n 110 MET 107 A ASP 108 n 111 ASP 108 A TYR 109 n 112 TYR 109 A TRP 110 n 113 TRP 110 A GLY 111 n 114 GLY 111 A GLN 112 n 115 GLN 112 A GLY 113 n 116 GLY 113 A THR 114 n 117 THR 114 A SER 115 n 118 SER 115 A VAL 116 n 119 VAL 116 A ILE 117 n 120 ILE 117 A VAL 118 n 121 VAL 118 A SER 119 n 122 SER 119 A SER 120 n 123 SER 120 A GLY 121 n 124 GLY 121 A THR 122 n 125 THR 122 A n 126 123 A n 127 124 A n 128 125 A n 129 126 A n 130 127 A n 131 128 A n 132 129 A n 133 130 A n 134 131 A n 135 132 A n 136 133 A n 137 134 A n 138 135 A n 139 136 A n 140 137 A n 141 138 A ALA 139 n 142 ALA 139 A SER 140 n 143 SER 140 A ASP 141 n 144 ASP 141 A ILE 142 n 145 ILE 142 A VAL 143 n 146 VAL 143 A LEU 144 n 147 LEU 144 A THR 145 n 148 THR 145 A GLN 146 n 149 GLN 146 A SER 147 n 150 SER 147 A PRO 148 n 151 PRO 148 A ALA 149 n 152 ALA 149 A THR 150 n 153 THR 150 A LEU 151 n 154 LEU 151 A SER 152 n 155 SER 152 A VAL 153 n 156 VAL 153 A THR 154 n 157 THR 154 A PRO 155 n 158 PRO 155 A GLY 156 n 159 GLY 156 A ASP 157 n 160 ASP 157 A ARG 158 n 161 ARG 158 A VAL 159 n 162 VAL 159 A SER 160 n 163 SER 160 A LEU 161 n 164 LEU 161 A SER 162 n 165 SER 162 A CYS 163 n 166 CYS 163 A ARG 164 n 167 ARG 164 A ALA 165 n 168 ALA 165 A SER 166 n 169 SER 166 A GLN 167 n 170 GLN 167 A GLY 168 n 171 GLY 168 A ILE 169 n 172 ILE 169 A TYR 170 n 173 TYR 170 A ASN 171 n 174 ASN 171 A TYR 172 n 175 TYR 172 A VAL 173 n 176 VAL 173 A HIS 174 n 177 HIS 174 A TRP 175 n 178 TRP 175 A PHE 176 n 179 PHE 176 A GLN 177 n 180 GLN 177 A GLN 178 n 181 GLN 178 A LYS 179 n 182 LYS 179 A SER 180 n 183 SER 180 A HIS 181 n 184 HIS 181 A GLU 182 n 185 GLU 182 A SER 183 n 186 SER 183 A PRO 184 n 187 PRO 184 A ARG 185 n 188 ARG 185 A LEU 186 n 189 LEU 186 A LEU 187 n 190 LEU 187 A ILE 188 n 191 ILE 188 A LYS 189 n 192 LYS 189 A TYR 190 n 193 TYR 190 A ALA 191 n 194 ALA 191 A SER 192 n 195 SER 192 A GLN 193 n 196 GLN 193 A SER 194 n 197 SER 194 A ILE 195 n 198 ILE 195 A SER 196 n 199 SER 196 A GLY 197 n 200 GLY 197 A ILE 198 n 201 ILE 198 A PRO 199 n 202 PRO 199 A SER 200 n 203 SER 200 A ARG 201 n 204 ARG 201 A PHE 202 n 205 PHE 202 A SER 203 n 206 SER 203 A GLY 204 n 207 GLY 204 A SER 205 n 208 SER 205 A GLY 206 n 209 GLY 206 A SER 207 n 210 SER 207 A GLY 208 n 211 GLY 208 A THR 209 n 212 THR 209 A ASP 210 n 213 ASP 210 A PHE 211 n 214 PHE 211 A THR 212 n 215 THR 212 A LEU 213 n 216 LEU 213 A SER 214 n 217 SER 214 A ILE 215 n 218 ILE 215 A ASN 216 n 219 ASN 216 A SER 217 n 220 SER 217 A VAL 218 n 221 VAL 218 A GLU 219 n 222 GLU 219 A SER 220 n 223 SER 220 A GLU 221 n 224 GLU 221 A ASP 222 n 225 ASP 222 A PHE 223 n 226 PHE 223 A GLY 224 n 227 GLY 224 A MET 225 n 228 MET 225 A TYR 226 n 229 TYR 226 A PHE 227 n 230 PHE 227 A CYS 228 n 231 CYS 228 A GLN 229 n 232 GLN 229 A GLN 230 n 233 GLN 230 A THR 231 n 234 THR 231 A ASN 232 n 235 ASN 232 A LYS 233 n 236 LYS 233 A TRP 234 n 237 TRP 234 A PRO 235 n 238 PRO 235 A LEU 236 n 239 LEU 236 A THR 237 n 240 THR 237 A PHE 238 n 241 PHE 238 A GLY 239 n 242 GLY 239 A ALA 240 n 243 ALA 240 A GLY 241 n 244 GLY 241 A THR 242 n 245 THR 242 A LYS 243 n 246 LYS 243 A LEU 244 n 247 LEU 244 A GLU 245 n 248 GLU 245 A LEU 246 n 249 LEU 246 A LYS 247 n 250 LYS 247 A ALA 248 n 251 ALA 248 A n 252 249 A n 253 250 A n 254 251 A n 255 252 A n 256 253 A n 257 254 A n 258 255 A n 259 256 A n 260 257 A n 261 258 A n 262 259 A n 263 260 A n 264 261 A n 265 262 A n 266 263 A n 267 264 A n 268 265 A n 269 266 A n 270 267 A n 271 268 A n 272 269 A n 273 270 A n 274 271 A n 275 272 A n 276 273 A n 277 274 A n 278 275 A n 279 276 A n 280 277 A n 281 278 A n 282 279 A n 283 280 A n 284 281 A n 285 282 A n 286 283 A n 287 284 A n 288 285 A n 1 -2 B n 2 -1 B n 3 0 B GLU 1 n 4 GLU 1 B VAL 2 n 5 VAL 2 B GLN 3 n 6 GLN 3 B LEU 4 n 7 LEU 4 B GLN 5 n 8 GLN 5 B GLN 6 n 9 GLN 6 B SER 7 n 10 SER 7 B GLY 8 n 11 GLY 8 B PRO 9 n 12 PRO 9 B GLU 10 n 13 GLU 10 B LEU 11 n 14 LEU 11 B VAL 12 n 15 VAL 12 B LYS 13 n 16 LYS 13 B PRO 14 n 17 PRO 14 B GLY 15 n 18 GLY 15 B ALA 16 n 19 ALA 16 B SER 17 n 20 SER 17 B LEU 18 n 21 LEU 18 B LYS 19 n 22 LYS 19 B ILE 20 n 23 ILE 20 B SER 21 n 24 SER 21 B CYS 22 n 25 CYS 22 B LYS 23 n 26 LYS 23 B THR 24 n 27 THR 24 B SER 25 n 28 SER 25 B GLY 26 n 29 GLY 26 B TYR 27 n 30 TYR 27 B THR 28 n 31 THR 28 B PHE 29 n 32 PHE 29 B THR 30 n 33 THR 30 B ASP 31 n 34 ASP 31 B PHE 32 n 35 PHE 32 B THR 33 n 36 THR 33 B PHE 34 n 37 PHE 34 B HIS 35 n 38 HIS 35 B TRP 36 n 39 TRP 36 B VAL 37 n 40 VAL 37 B LYS 38 n 41 LYS 38 B LEU 39 n 42 LEU 39 B SER 40 n 43 SER 40 B HIS 41 n 44 HIS 41 B GLY 42 n 45 GLY 42 B PRO 43 n 46 PRO 43 B SER 44 n 47 SER 44 B LEU 45 n 48 LEU 45 B GLU 46 n 49 GLU 46 B TRP 47 n 50 TRP 47 B ILE 48 n 51 ILE 48 B GLY 49 n 52 GLY 49 B THR 50 n 53 THR 50 B ILE 51 n 54 ILE 51 B LYS 52 n 55 LYS 52 B PRO 53 n 56 PRO 53 B SER 54 n 57 SER 54 B ASN 55 n 58 ASN 55 B GLY 56 n 59 GLY 56 B ASP 57 n 60 ASP 57 B THR 58 n 61 THR 58 B ALA 59 n 62 ALA 59 B TYR 60 n 63 TYR 60 B ASN 61 n 64 ASN 61 B GLN 62 n 65 GLN 62 B LYS 63 n 66 LYS 63 B PHE 64 n 67 PHE 64 B LYS 65 n 68 LYS 65 B GLY 66 n 69 GLY 66 B LYS 67 n 70 LYS 67 B ALA 68 n 71 ALA 68 B THR 69 n 72 THR 69 B LEU 70 n 73 LEU 70 B SER 71 n 74 SER 71 B VAL 72 n 75 VAL 72 B ASP 73 n 76 ASP 73 B LYS 74 n 77 LYS 74 B SER 75 n 78 SER 75 B ALA 76 n 79 ALA 76 B SER 77 n 80 SER 77 B THR 78 n 81 THR 78 B ALA 79 n 82 ALA 79 B HIS 80 n 83 HIS 80 B ILE 81 n 84 ILE 81 B GLU 82 n 85 GLU 82 B PHE 83 n 86 PHE 83 B ARG 84 n 87 ARG 84 B SER 85 n 88 SER 85 B LEU 86 n 89 LEU 86 B THR 87 n 90 THR 87 B SER 88 n 91 SER 88 B GLU 89 n 92 GLU 89 B ASP 90 n 93 ASP 90 B SER 91 n 94 SER 91 B ALA 92 n 95 ALA 92 B VAL 93 n 96 VAL 93 B TYR 94 n 97 TYR 94 B PHE 95 n 98 PHE 95 B CYS 96 n 99 CYS 96 B ALA 97 n 100 ALA 97 B ARG 98 n 101 ARG 98 B PHE 99 n 102 PHE 99 B GLY 100 n 103 GLY 100 B GLY 101 n 104 GLY 101 B SER 102 n 105 SER 102 B TYR 103 n 106 TYR 103 B PRO 104 n 107 PRO 104 B TYR 105 n 108 TYR 105 B ALA 106 n 109 ALA 106 B MET 107 n 110 MET 107 B ASP 108 n 111 ASP 108 B TYR 109 n 112 TYR 109 B TRP 110 n 113 TRP 110 B GLY 111 n 114 GLY 111 B GLN 112 n 115 GLN 112 B GLY 113 n 116 GLY 113 B THR 114 n 117 THR 114 B SER 115 n 118 SER 115 B VAL 116 n 119 VAL 116 B ILE 117 n 120 ILE 117 B VAL 118 n 121 VAL 118 B SER 119 n 122 SER 119 B SER 120 n 123 SER 120 B GLY 121 n 124 GLY 121 B THR 122 n 125 THR 122 B n 126 123 B n 127 124 B n 128 125 B n 129 126 B n 130 127 B n 131 128 B n 132 129 B n 133 130 B n 134 131 B n 135 132 B n 136 133 B n 137 134 B n 138 135 B n 139 136 B n 140 137 B GLY 138 n 141 GLY 138 B ALA 139 n 142 ALA 139 B SER 140 n 143 SER 140 B ASP 141 n 144 ASP 141 B ILE 142 n 145 ILE 142 B VAL 143 n 146 VAL 143 B LEU 144 n 147 LEU 144 B THR 145 n 148 THR 145 B GLN 146 n 149 GLN 146 B SER 147 n 150 SER 147 B PRO 148 n 151 PRO 148 B ALA 149 n 152 ALA 149 B THR 150 n 153 THR 150 B LEU 151 n 154 LEU 151 B SER 152 n 155 SER 152 B VAL 153 n 156 VAL 153 B THR 154 n 157 THR 154 B PRO 155 n 158 PRO 155 B GLY 156 n 159 GLY 156 B ASP 157 n 160 ASP 157 B ARG 158 n 161 ARG 158 B VAL 159 n 162 VAL 159 B SER 160 n 163 SER 160 B LEU 161 n 164 LEU 161 B SER 162 n 165 SER 162 B CYS 163 n 166 CYS 163 B ARG 164 n 167 ARG 164 B ALA 165 n 168 ALA 165 B SER 166 n 169 SER 166 B GLN 167 n 170 GLN 167 B GLY 168 n 171 GLY 168 B ILE 169 n 172 ILE 169 B TYR 170 n 173 TYR 170 B ASN 171 n 174 ASN 171 B TYR 172 n 175 TYR 172 B VAL 173 n 176 VAL 173 B HIS 174 n 177 HIS 174 B TRP 175 n 178 TRP 175 B PHE 176 n 179 PHE 176 B GLN 177 n 180 GLN 177 B GLN 178 n 181 GLN 178 B LYS 179 n 182 LYS 179 B SER 180 n 183 SER 180 B HIS 181 n 184 HIS 181 B GLU 182 n 185 GLU 182 B SER 183 n 186 SER 183 B PRO 184 n 187 PRO 184 B ARG 185 n 188 ARG 185 B LEU 186 n 189 LEU 186 B LEU 187 n 190 LEU 187 B ILE 188 n 191 ILE 188 B LYS 189 n 192 LYS 189 B TYR 190 n 193 TYR 190 B ALA 191 n 194 ALA 191 B SER 192 n 195 SER 192 B GLN 193 n 196 GLN 193 B SER 194 n 197 SER 194 B ILE 195 n 198 ILE 195 B SER 196 n 199 SER 196 B GLY 197 n 200 GLY 197 B ILE 198 n 201 ILE 198 B PRO 199 n 202 PRO 199 B SER 200 n 203 SER 200 B ARG 201 n 204 ARG 201 B PHE 202 n 205 PHE 202 B SER 203 n 206 SER 203 B GLY 204 n 207 GLY 204 B SER 205 n 208 SER 205 B GLY 206 n 209 GLY 206 B SER 207 n 210 SER 207 B GLY 208 n 211 GLY 208 B THR 209 n 212 THR 209 B ASP 210 n 213 ASP 210 B PHE 211 n 214 PHE 211 B THR 212 n 215 THR 212 B LEU 213 n 216 LEU 213 B SER 214 n 217 SER 214 B ILE 215 n 218 ILE 215 B ASN 216 n 219 ASN 216 B SER 217 n 220 SER 217 B VAL 218 n 221 VAL 218 B GLU 219 n 222 GLU 219 B SER 220 n 223 SER 220 B GLU 221 n 224 GLU 221 B ASP 222 n 225 ASP 222 B PHE 223 n 226 PHE 223 B GLY 224 n 227 GLY 224 B MET 225 n 228 MET 225 B TYR 226 n 229 TYR 226 B PHE 227 n 230 PHE 227 B CYS 228 n 231 CYS 228 B GLN 229 n 232 GLN 229 B GLN 230 n 233 GLN 230 B THR 231 n 234 THR 231 B ASN 232 n 235 ASN 232 B LYS 233 n 236 LYS 233 B TRP 234 n 237 TRP 234 B PRO 235 n 238 PRO 235 B LEU 236 n 239 LEU 236 B THR 237 n 240 THR 237 B PHE 238 n 241 PHE 238 B GLY 239 n 242 GLY 239 B ALA 240 n 243 ALA 240 B GLY 241 n 244 GLY 241 B THR 242 n 245 THR 242 B LYS 243 n 246 LYS 243 B LEU 244 n 247 LEU 244 B GLU 245 n 248 GLU 245 B LEU 246 n 249 LEU 246 B LYS 247 n 250 LYS 247 B ALA 248 n 251 ALA 248 B n 252 249 B n 253 250 B n 254 251 B n 255 252 B n 256 253 B n 257 254 B n 258 255 B n 259 256 B n 260 257 B n 261 258 B n 262 259 B n 263 260 B n 264 261 B n 265 262 B n 266 263 B n 267 264 B n 268 265 B n 269 266 B n 270 267 B n 271 268 B n 272 269 B n 273 270 B n 274 271 B n 275 272 B n 276 273 B n 277 274 B n 278 275 B n 279 276 B n 280 277 B n 281 278 B n 282 279 B n 283 280 B n 284 281 B n 285 282 B n 286 283 B n 287 284 B n 288 285 B n 1 529 E GLY 530 n 2 GLY 530 E GLU 531 n 3 GLU 531 E ASN 532 n 4 ASN 532 E GLU 533 n 5 GLU 533 E THR 534 n 6 THR 534 E ASP 535 n 7 ASP 535 E VAL 536 n 8 VAL 536 E MET 537 n 9 MET 537 E LEU 538 n 10 LEU 538 E LEU 539 n 11 LEU 539 E ASN 540 n 12 ASN 540 E n 1 529 D n 2 530 D n 3 531 D ASN 532 n 4 ASN 532 D GLU 533 n 5 GLU 533 D THR 534 n 6 THR 534 D ASP 535 n 7 ASP 535 D VAL 536 n 8 VAL 536 D MET 537 n 9 MET 537 D LEU 538 n 10 LEU 538 D LEU 539 n 11 LEU 539 D ASN 540 n 12 ASN 540 D software_defined_assembly PISA 4 tetrameric none 4530 -26 20610 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLN 5 A N GLN 8 A O LYS 23 A O LYS 26 A N LEU 18 A N LEU 21 A O PHE 83 A O PHE 86 A O THR 78 A O THR 81 A N ASP 73 A N ASP 76 A N GLU 10 A N GLU 13 A O SER 115 A O SER 118 A O VAL 116 A O VAL 119 A N ALA 92 A N ALA 95 A O VAL 93 A O VAL 96 A N LEU 39 A N LEU 42 A N PHE 34 A N PHE 37 A O ILE 51 A O ILE 54 A N THR 50 A N THR 53 A O ALA 59 A O ALA 62 A N GLU 10 A N GLU 13 A O SER 115 A O SER 118 A O VAL 116 A O VAL 119 A N ALA 92 A N ALA 95 A N ARG 98 A N ARG 101 A O TYR 109 A O TYR 112 A N THR 145 A N THR 148 A O ARG 164 A O ARG 167 A N LEU 161 A N LEU 164 A O LEU 213 A O LEU 216 A O SER 214 A O SER 217 A N SER 203 A N SER 206 A N LEU 151 A N LEU 154 A O GLU 245 A O GLU 248 A O LEU 244 A O LEU 247 A N GLY 224 A N GLY 227 A O MET 225 A O MET 228 A N GLN 178 A N GLN 181 A N TRP 175 A N TRP 178 A O LEU 187 A O LEU 190 A N LYS 189 A N LYS 192 A O GLN 193 A O GLN 196 A N LEU 151 A N LEU 154 A O GLU 245 A O GLU 248 A O LEU 244 A O LEU 247 A N GLY 224 A N GLY 227 A N GLN 230 A N GLN 233 A O THR 237 A O THR 240 B N GLN 5 B N GLN 8 B O LYS 23 B O LYS 26 B N LEU 18 B N LEU 21 B O PHE 83 B O PHE 86 B O THR 78 B O THR 81 B N ASP 73 B N ASP 76 B N GLU 10 B N GLU 13 B O SER 115 B O SER 118 B O VAL 116 B O VAL 119 B N ALA 92 B N ALA 95 B O VAL 93 B O VAL 96 B N LEU 39 B N LEU 42 B N PHE 34 B N PHE 37 B O ILE 51 B O ILE 54 B N THR 50 B N THR 53 B O ALA 59 B O ALA 62 B N GLU 10 B N GLU 13 B O SER 115 B O SER 118 B O VAL 116 B O VAL 119 B N ALA 92 B N ALA 95 B N ARG 98 B N ARG 101 B O TYR 109 B O TYR 112 B N THR 145 B N THR 148 B O ARG 164 B O ARG 167 B N LEU 161 B N LEU 164 B O LEU 213 B O LEU 216 B O SER 214 B O SER 217 B N SER 203 B N SER 206 B N VAL 153 B N VAL 156 B O GLU 245 B O GLU 248 B O LEU 244 B O LEU 247 B N GLY 224 B N GLY 227 B O MET 225 B O MET 228 B N GLN 178 B N GLN 181 B N TRP 175 B N TRP 178 B O LEU 187 B O LEU 190 B N LYS 189 B N LYS 192 B O GLN 193 B O GLN 196 B N VAL 153 B N VAL 156 B O GLU 245 B O GLU 248 B O LEU 244 B O LEU 247 B N GLY 224 B N GLY 227 B N GLN 230 B N GLN 233 B O THR 237 B O THR 240 1 A HOH 332 E HOH 1 A HOH 424 E HOH 1 A HOH 431 E HOH 1 B HOH 322 F HOH 1 A ALA -2 A ALA 1 1 Y 1 A MET -1 A MET 2 1 Y 1 A ARG 0 A ARG 3 1 Y 1 A GLY 123 A GLY 126 1 Y 1 A GLY 124 A GLY 127 1 Y 1 A SER 125 A SER 128 1 Y 1 A GLY 126 A GLY 129 1 Y 1 A GLY 127 A GLY 130 1 Y 1 A GLY 128 A GLY 131 1 Y 1 A GLY 129 A GLY 132 1 Y 1 A SER 130 A SER 133 1 Y 1 A GLY 131 A GLY 134 1 Y 1 A GLY 132 A GLY 135 1 Y 1 A GLY 133 A GLY 136 1 Y 1 A GLY 134 A GLY 137 1 Y 1 A SER 135 A SER 138 1 Y 1 A GLY 136 A GLY 139 1 Y 1 A GLY 137 A GLY 140 1 Y 1 A GLY 138 A GLY 141 1 Y 1 A ALA 249 A ALA 252 1 Y 1 A ALA 250 A ALA 253 1 Y 1 A ASP 251 A ASP 254 1 Y 1 A ASP 252 A ASP 255 1 Y 1 A ASP 253 A ASP 256 1 Y 1 A ASP 254 A ASP 257 1 Y 1 A LYS 255 A LYS 258 1 Y 1 A ALA 256 A ALA 259 1 Y 1 A GLY 257 A GLY 260 1 Y 1 A TRP 258 A TRP 261 1 Y 1 A SER 259 A SER 262 1 Y 1 A HIS 260 A HIS 263 1 Y 1 A PRO 261 A PRO 264 1 Y 1 A GLN 262 A GLN 265 1 Y 1 A PHE 263 A PHE 266 1 Y 1 A GLU 264 A GLU 267 1 Y 1 A LYS 265 A LYS 268 1 Y 1 A GLY 266 A GLY 269 1 Y 1 A GLY 267 A GLY 270 1 Y 1 A GLY 268 A GLY 271 1 Y 1 A SER 269 A SER 272 1 Y 1 A GLY 270 A GLY 273 1 Y 1 A GLY 271 A GLY 274 1 Y 1 A GLY 272 A GLY 275 1 Y 1 A SER 273 A SER 276 1 Y 1 A GLY 274 A GLY 277 1 Y 1 A GLY 275 A GLY 278 1 Y 1 A GLY 276 A GLY 279 1 Y 1 A SER 277 A SER 280 1 Y 1 A TRP 278 A TRP 281 1 Y 1 A SER 279 A SER 282 1 Y 1 A HIS 280 A HIS 283 1 Y 1 A PRO 281 A PRO 284 1 Y 1 A GLN 282 A GLN 285 1 Y 1 A PHE 283 A PHE 286 1 Y 1 A GLU 284 A GLU 287 1 Y 1 A LYS 285 A LYS 288 1 Y 1 B ALA -2 B ALA 1 1 Y 1 B MET -1 B MET 2 1 Y 1 B ARG 0 B ARG 3 1 Y 1 B GLY 123 B GLY 126 1 Y 1 B GLY 124 B GLY 127 1 Y 1 B SER 125 B SER 128 1 Y 1 B GLY 126 B GLY 129 1 Y 1 B GLY 127 B GLY 130 1 Y 1 B GLY 128 B GLY 131 1 Y 1 B GLY 129 B GLY 132 1 Y 1 B SER 130 B SER 133 1 Y 1 B GLY 131 B GLY 134 1 Y 1 B GLY 132 B GLY 135 1 Y 1 B GLY 133 B GLY 136 1 Y 1 B GLY 134 B GLY 137 1 Y 1 B SER 135 B SER 138 1 Y 1 B GLY 136 B GLY 139 1 Y 1 B GLY 137 B GLY 140 1 Y 1 B ALA 249 B ALA 252 1 Y 1 B ALA 250 B ALA 253 1 Y 1 B ASP 251 B ASP 254 1 Y 1 B ASP 252 B ASP 255 1 Y 1 B ASP 253 B ASP 256 1 Y 1 B ASP 254 B ASP 257 1 Y 1 B LYS 255 B LYS 258 1 Y 1 B ALA 256 B ALA 259 1 Y 1 B GLY 257 B GLY 260 1 Y 1 B TRP 258 B TRP 261 1 Y 1 B SER 259 B SER 262 1 Y 1 B HIS 260 B HIS 263 1 Y 1 B PRO 261 B PRO 264 1 Y 1 B GLN 262 B GLN 265 1 Y 1 B PHE 263 B PHE 266 1 Y 1 B GLU 264 B GLU 267 1 Y 1 B LYS 265 B LYS 268 1 Y 1 B GLY 266 B GLY 269 1 Y 1 B GLY 267 B GLY 270 1 Y 1 B GLY 268 B GLY 271 1 Y 1 B SER 269 B SER 272 1 Y 1 B GLY 270 B GLY 273 1 Y 1 B GLY 271 B GLY 274 1 Y 1 B GLY 272 B GLY 275 1 Y 1 B SER 273 B SER 276 1 Y 1 B GLY 274 B GLY 277 1 Y 1 B GLY 275 B GLY 278 1 Y 1 B GLY 276 B GLY 279 1 Y 1 B SER 277 B SER 280 1 Y 1 B TRP 278 B TRP 281 1 Y 1 B SER 279 B SER 282 1 Y 1 B HIS 280 B HIS 283 1 Y 1 B PRO 281 B PRO 284 1 Y 1 B GLN 282 B GLN 285 1 Y 1 B PHE 283 B PHE 286 1 Y 1 B GLU 284 B GLU 287 1 Y 1 B LYS 285 B LYS 288 1 Y 1 E TRP 529 C TRP 1 1 Y 1 D TRP 529 D TRP 1 1 Y 1 D GLY 530 D GLY 2 1 Y 1 D GLU 531 D GLU 3 1 Y 1 A TYR 170 56.87 -120.79 1 A TYR 172 -80.46 46.13 1 A ALA 191 66.07 -41.98 1 B TYR 170 56.28 -120.26 1 B TYR 172 -81.89 46.19 1 B ALA 191 66.04 -42.61 28.55 -0.2772 0.0000 0.0000 -0.2772 0.0000 0.5543 0.9406 0.9339 0.2166 0.1967 0.1977 2.00 20.16 2561 50285 5.09 97.37 0.135 RANDOM 1 THROUGHOUT 0.0 MOLECULAR REPLACEMENT 0.140 0.125 0.123 0.255 2.00 20.16 269 3996 0 0 3727 0.010 3821 HARMONIC 2.00 1.07 5178 HARMONIC 2.00 1264 SINUSOIDAL 2.00 81 HARMONIC 2.00 557 HARMONIC 5.00 3821 HARMONIC 20.00 3.88 14.98 503 SEMIHARMONIC 5.00 4377 SEMIHARMONIC 4.00 0.2492 0.2253 0.2267 2.05 150 2455 2605 20 5.76 69.06 28.69 2 49.31 5NPI 50405 1 10.3 5.9 97.6 2 2.11 1.9 6158 1 2.9 83.5 refinement BUSTER 2.10.2 data reduction XDS data scaling XSCALE phasing PHASER N Single chain variable fragment of the non-neutralizing antibody DAO5, Epitope peptide Structure of the Hepatitis C virus strain J4 glycoprotein E2 antigenic region 532-540 bound to the single chain variable fragment of the non-neutralizing antibody DAO5 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 3 N N 3 N N A THR 28 A THR 31 HELX_P A PHE 32 A PHE 35 5 AA1 5 A GLN 62 A GLN 65 HELX_P A LYS 65 A LYS 68 5 AA2 4 A THR 87 A THR 90 HELX_P A SER 91 A SER 94 5 AA3 5 A GLU 219 A GLU 222 HELX_P A PHE 223 A PHE 226 5 AA4 5 B THR 28 B THR 31 HELX_P B PHE 32 B PHE 35 5 AA5 5 B GLN 62 B GLN 65 HELX_P B LYS 65 B LYS 68 5 AA6 4 B THR 87 B THR 90 HELX_P B SER 91 B SER 94 5 AA7 5 B GLU 219 B GLU 222 HELX_P B PHE 223 B PHE 226 5 AA8 5 E THR 534 C THR 6 HELX_P E ASN 540 C ASN 12 1 AA9 7 D THR 534 D THR 6 HELX_P D ASN 540 D ASN 12 1 AB1 7 disulf 2.066 A CYS 22 A SG CYS 25 1_555 A CYS 96 A SG CYS 99 1_555 disulf 2.103 A CYS 163 A SG CYS 166 1_555 A CYS 228 A SG CYS 231 1_555 disulf 2.063 B CYS 22 B SG CYS 25 1_555 B CYS 96 B SG CYS 99 1_555 disulf 2.073 B CYS 163 B SG CYS 166 1_555 B CYS 228 B SG CYS 231 1_555 VIRAL PROTEIN Envelope glycoprotein, Hepatitis C virus, single chain variable fragment, CD81 binding loop, viral protein A GLY 42 A GLY 45 1 A PRO 43 A PRO 46 -3.68 A TYR 103 A TYR 106 1 A PRO 104 A PRO 107 -4.08 A SER 147 A SER 150 1 A PRO 148 A PRO 151 -10.12 A TRP 234 A TRP 237 1 A PRO 235 A PRO 238 -7.38 B GLY 42 B GLY 45 1 B PRO 43 B PRO 46 -2.29 B TYR 103 B TYR 106 1 B PRO 104 B PRO 107 -3.99 B SER 147 B SER 150 1 B PRO 148 B PRO 151 -3.66 B TRP 234 B TRP 237 1 B PRO 235 B PRO 238 -9.86 5NPI PDB 1 1 5NPI 5NPI PDB 2 1 5NPI -2 285 5NPI -2 285 5NPI A 1 1 288 -2 285 5NPI -2 285 5NPI B 1 1 288 529 540 5NPI 529 540 5NPI E 2 1 12 529 540 5NPI 529 540 5NPI D 2 1 12 4 6 4 4 6 4 4 6 4 4 6 4 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A GLN 3 A GLN 6 A GLN 6 A GLN 9 A LEU 18 A LEU 21 A SER 25 A SER 28 A THR 78 A THR 81 A PHE 83 A PHE 86 A ALA 68 A ALA 71 A ASP 73 A ASP 76 A GLU 10 A GLU 13 A VAL 12 A VAL 15 A THR 114 A THR 117 A VAL 118 A VAL 121 A ALA 92 A ALA 95 A GLY 100 A GLY 103 A PHE 34 A PHE 37 A SER 40 A SER 43 A SER 44 A SER 47 A ILE 51 A ILE 54 A THR 58 A THR 61 A TYR 60 A TYR 63 A GLU 10 A GLU 13 A VAL 12 A VAL 15 A THR 114 A THR 117 A VAL 118 A VAL 121 A ALA 92 A ALA 95 A GLY 100 A GLY 103 A ALA 106 A ALA 109 A TRP 110 A TRP 113 A LEU 144 A LEU 147 A SER 147 A SER 150 A VAL 159 A VAL 162 A ALA 165 A ALA 168 A ASP 210 A ASP 213 A ILE 215 A ILE 218 A PHE 202 A PHE 205 A SER 207 A SER 210 A THR 150 A THR 153 A VAL 153 A VAL 156 A THR 242 A THR 245 A LEU 246 A LEU 249 A GLY 224 A GLY 227 A GLN 230 A GLN 233 A VAL 173 A VAL 176 A GLN 178 A GLN 181 A ARG 185 A ARG 188 A LYS 189 A LYS 192 A GLN 193 A GLN 196 A SER 194 A SER 197 A THR 150 A THR 153 A VAL 153 A VAL 156 A THR 242 A THR 245 A LEU 246 A LEU 249 A GLY 224 A GLY 227 A GLN 230 A GLN 233 A THR 237 A THR 240 A PHE 238 A PHE 241 B GLN 3 B GLN 6 B GLN 6 B GLN 9 B LEU 18 B LEU 21 B SER 25 B SER 28 B THR 78 B THR 81 B PHE 83 B PHE 86 B ALA 68 B ALA 71 B ASP 73 B ASP 76 B GLU 10 B GLU 13 B VAL 12 B VAL 15 B THR 114 B THR 117 B VAL 118 B VAL 121 B ALA 92 B ALA 95 B GLY 100 B GLY 103 B PHE 34 B PHE 37 B SER 40 B SER 43 B SER 44 B SER 47 B ILE 51 B ILE 54 B THR 58 B THR 61 B TYR 60 B TYR 63 B GLU 10 B GLU 13 B VAL 12 B VAL 15 B THR 114 B THR 117 B VAL 118 B VAL 121 B ALA 92 B ALA 95 B GLY 100 B GLY 103 B ALA 106 B ALA 109 B TRP 110 B TRP 113 B LEU 144 B LEU 147 B SER 147 B SER 150 B VAL 159 B VAL 162 B ALA 165 B ALA 168 B ASP 210 B ASP 213 B ILE 215 B ILE 218 B PHE 202 B PHE 205 B SER 207 B SER 210 B THR 150 B THR 153 B VAL 153 B VAL 156 B THR 242 B THR 245 B LEU 246 B LEU 249 B GLY 224 B GLY 227 B GLN 230 B GLN 233 B VAL 173 B VAL 176 B GLN 178 B GLN 181 B ARG 185 B ARG 188 B LYS 189 B LYS 192 B GLN 193 B GLN 196 B SER 194 B SER 197 B THR 150 B THR 153 B VAL 153 B VAL 156 B THR 242 B THR 245 B LEU 246 B LEU 249 B GLY 224 B GLY 227 B GLN 230 B GLN 233 B THR 237 B THR 240 B PHE 238 B PHE 241 92 P 41 21 2