1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Trajkovski, M.
Plavec, J.
Endoh, T.
Tateishi-Karimata, H.
Sugimoto, N.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C10 H14 N5 O6 P
331.222
y
2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
DNA linking
C9 H14 N3 O7 P
307.197
y
2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE
DNA linking
C10 H14 N5 O7 P
347.221
y
2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE
DNA linking
C10 H15 N2 O8 P
322.208
y
THYMIDINE-5'-MONOPHOSPHATE
DNA linking
UK
Nucleic Acids Res.
NARHAD
0389
1362-4962
46
4301
4315
10.1093/nar/gky250
29648656
Pursuing origins of (poly)ethylene glycol-induced G-quadruplex structural modulations.
2018
10.2210/pdb5nyu/pdb
pdb_00005nyu
6321.064
DNA (5'-D(*TP*AP*GP*GP*GP*AP*CP*GP*GP*GP*CP*GP*GP*GP*CP*AP*GP*GP*GP*T)-3')
1
syn
polymer
no
no
(DT)(DA)(DG)(DG)(DG)(DA)(DC)(DG)(DG)(DG)(DC)(DG)(DG)(DG)(DC)(DA)(DG)(DG)(DG)(DT)
TAGGGACGGGCGGGCAGGGT
A
polydeoxyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1.313
3
6
A
3
A
17
91.565
A_DG3:DG17_A
1
0.165
-2.126
0.093
-2.960
1.313
3
6
A
4
A
18
91.228
A_DG4:DG18_A
2
6.661
-1.814
-0.046
-3.227
-4.674
3
6
A
8
A
12
-93.655
A_DG8:DG12_A
3
-5.374
1.990
0.380
3.077
3.106
25.646
A
A
3
4
2.172
A
A
17
18
3.140
0.964
-0.035
-0.820
AA_DG3DG4:DG18DG17_AA
1
0.353
-0.796
25.626
-2.107
0.174
-2.995
152.076
A
A
4
8
-6.734
A
A
18
12
-3.037
-13.068
-2.425
-2.712
AA_DG4DG8:DG12DG18_AA
2
6.956
-3.585
151.836
-1.441
1.226
citation
citation_author
citation
pdbx_nmr_spectrometer
pdbx_nmr_software
pdbx_seq_map_depositor_info
pdbx_nmr_spectrometer
pdbx_seq_map_depositor_info
database_2
pdbx_database_status
repository
Initial release
Data collection
Database references
Data collection
Database references
Data collection
Data collection
Data collection
Database references
Other
1
0
2018-04-11
1
1
2018-05-09
1
2
2018-05-16
1
3
2018-10-03
1
4
2019-05-08
1
5
2019-06-19
1
6
2023-06-14
_citation.pdbx_database_id_PubMed
_citation.title
_citation.journal_volume
_citation.page_first
_citation.page_last
_pdbx_nmr_spectrometer.model
_pdbx_nmr_spectrometer.type
_pdbx_nmr_software.name
_pdbx_seq_map_depositor_info.one_letter_code_mod
_pdbx_nmr_spectrometer.details
_pdbx_nmr_spectrometer.manufacturer
_pdbx_seq_map_depositor_info.one_letter_code_mod
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_database_status.status_code_nmr_data
M2 G-quadruplex 10 wt% PEG8000
N
PDBE
Y
PDBE
2017-05-11
REL
REL
REL
REL
32630
synthetic construct
sample
1
20
structures with the least restraint violations
100
10
anisotropic
1
2D 1H-1H NOESY
anisotropic
1
2D DQF-COSY
0.2
mM
0
120
mM
10PEG8000
6.5
pH
1
bar
298
K
simulated annealing
1
lowest energy
0.2 mM 0 M2 10PEG8000, 90% H2O/10% D2O
M2 10PEG8000
90% H2O/10% D2O
solution
Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
structure calculation
Amber
Varian
collection
VNMR
Goddard
chemical shift assignment
Sparky
Agilent-Varian
600
Varian
Uniform NMR System
1
DT
1
n
1
DT
1
A
DA
2
n
2
DA
2
A
DG
3
n
3
DG
3
A
DG
4
n
4
DG
4
A
DG
5
n
5
DG
5
A
DA
6
n
6
DA
6
A
DC
7
n
7
DC
7
A
DG
8
n
8
DG
8
A
DG
9
n
9
DG
9
A
DG
10
n
10
DG
10
A
DC
11
n
11
DC
11
A
DG
12
n
12
DG
12
A
DG
13
n
13
DG
13
A
DG
14
n
14
DG
14
A
DC
15
n
15
DC
15
A
DA
16
n
16
DA
16
A
DG
17
n
17
DG
17
A
DG
18
n
18
DG
18
A
DG
19
n
19
DG
19
A
DT
20
n
20
DT
20
A
author_and_software_defined_assembly
PISA
1
monomeric
none
0
0
3800
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
DA
2
0.070
SIDE CHAIN
1
A
DG
3
0.063
SIDE CHAIN
1
A
DA
6
0.116
SIDE CHAIN
2
A
DA
2
0.073
SIDE CHAIN
2
A
DG
3
0.078
SIDE CHAIN
2
A
DA
6
0.086
SIDE CHAIN
3
A
DA
2
0.068
SIDE CHAIN
3
A
DG
3
0.067
SIDE CHAIN
3
A
DA
6
0.090
SIDE CHAIN
3
A
DG
12
0.065
SIDE CHAIN
4
A
DA
2
0.067
SIDE CHAIN
4
A
DG
3
0.082
SIDE CHAIN
4
A
DA
6
0.094
SIDE CHAIN
5
A
DA
2
0.060
SIDE CHAIN
5
A
DG
3
0.070
SIDE CHAIN
5
A
DA
6
0.104
SIDE CHAIN
5
A
DG
9
0.056
SIDE CHAIN
5
A
DG
12
0.092
SIDE CHAIN
5
A
DG
17
0.065
SIDE CHAIN
6
A
DA
2
0.072
SIDE CHAIN
6
A
DG
3
0.077
SIDE CHAIN
6
A
DA
6
0.087
SIDE CHAIN
7
A
DA
2
0.072
SIDE CHAIN
7
A
DG
3
0.081
SIDE CHAIN
7
A
DA
6
0.094
SIDE CHAIN
8
A
DG
3
0.060
SIDE CHAIN
8
A
DA
6
0.113
SIDE CHAIN
8
A
DG
17
0.069
SIDE CHAIN
9
A
DA
2
0.074
SIDE CHAIN
9
A
DG
3
0.072
SIDE CHAIN
9
A
DA
6
0.112
SIDE CHAIN
9
A
DG
17
0.090
SIDE CHAIN
10
A
DG
3
0.061
SIDE CHAIN
10
A
DA
6
0.106
SIDE CHAIN
10
A
DG
12
0.074
SIDE CHAIN
10
A
DG
14
0.072
SIDE CHAIN
10
A
DG
17
0.078
SIDE CHAIN
1
2.45
0.30
108.30
110.75
A
A
A
O4'
C1'
N1
DT
DT
DT
1
1
1
N
1
-3.67
0.60
122.90
119.23
A
A
A
C6
C5
C7
DT
DT
DT
1
1
1
N
1
4.01
0.30
108.30
112.31
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
1
3.78
0.50
117.70
121.48
A
A
A
C5
C6
N1
DA
DA
DA
2
2
2
N
1
3.03
0.30
108.30
111.33
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
1
2.04
0.30
108.30
110.34
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
1
-3.07
0.50
117.00
113.93
A
A
A
C4
C5
C6
DA
DA
DA
6
6
6
N
1
3.57
0.50
117.70
121.27
A
A
A
C5
C6
N1
DA
DA
DA
6
6
6
N
1
-4.89
0.60
118.60
113.71
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
1
2.20
0.30
108.30
110.50
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
1
-4.92
0.70
121.90
116.98
A
A
A
N3
C2
O2
DC
DC
DC
7
7
7
N
1
2.55
0.30
108.30
110.85
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
1
2.25
0.30
108.30
110.55
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
1
2.46
0.30
108.30
110.76
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
1
2.34
0.30
108.30
110.64
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
1
-4.83
0.70
121.90
117.07
A
A
A
N3
C2
O2
DC
DC
DC
11
11
11
N
1
2.06
0.30
108.30
110.36
A
A
A
O4'
C1'
N9
DG
DG
DG
12
12
12
N
1
2.25
0.30
108.30
110.55
A
A
A
O4'
C1'
N9
DG
DG
DG
14
14
14
N
1
3.31
0.30
108.30
111.61
A
A
A
O4'
C1'
N1
DC
DC
DC
15
15
15
N
1
-4.88
0.70
121.90
117.02
A
A
A
N3
C2
O2
DC
DC
DC
15
15
15
N
1
3.33
0.50
117.70
121.03
A
A
A
C5
C6
N1
DA
DA
DA
16
16
16
N
1
-4.85
0.60
118.60
113.75
A
A
A
N1
C6
N6
DA
DA
DA
16
16
16
N
1
1.88
0.30
108.30
110.18
A
A
A
O4'
C1'
N9
DG
DG
DG
18
18
18
N
1
4.18
0.30
108.30
112.48
A
A
A
O4'
C1'
N9
DG
DG
DG
19
19
19
N
1
2.21
0.30
108.30
110.51
A
A
A
O4'
C1'
N1
DT
DT
DT
20
20
20
N
1
-3.74
0.60
122.90
119.16
A
A
A
C6
C5
C7
DT
DT
DT
20
20
20
N
2
2.50
0.30
108.30
110.80
A
A
A
O4'
C1'
N1
DT
DT
DT
1
1
1
N
2
-3.63
0.60
122.90
119.27
A
A
A
C6
C5
C7
DT
DT
DT
1
1
1
N
2
4.07
0.30
108.30
112.37
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
2
3.71
0.50
117.70
121.41
A
A
A
C5
C6
N1
DA
DA
DA
2
2
2
N
2
3.12
0.30
108.30
111.42
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
2
3.57
0.50
117.70
121.27
A
A
A
C5
C6
N1
DA
DA
DA
6
6
6
N
2
-5.06
0.60
118.60
113.54
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
2
1.96
0.30
108.30
110.26
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
2
-5.02
0.70
121.90
116.88
A
A
A
N3
C2
O2
DC
DC
DC
7
7
7
N
2
3.56
0.30
108.30
111.86
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
2
2.13
0.30
108.30
110.43
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
2
2.52
0.30
108.30
110.82
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
2
2.36
0.30
108.30
110.66
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
2
-4.83
0.70
121.90
117.07
A
A
A
N3
C2
O2
DC
DC
DC
11
11
11
N
2
2.02
0.30
108.30
110.32
A
A
A
O4'
C1'
N9
DG
DG
DG
12
12
12
N
2
1.86
0.30
108.30
110.16
A
A
A
O4'
C1'
N9
DG
DG
DG
14
14
14
N
2
3.34
0.30
108.30
111.64
A
A
A
O4'
C1'
N1
DC
DC
DC
15
15
15
N
2
-4.75
0.70
121.90
117.15
A
A
A
N3
C2
O2
DC
DC
DC
15
15
15
N
2
3.51
0.50
117.70
121.21
A
A
A
C5
C6
N1
DA
DA
DA
16
16
16
N
2
-5.36
0.60
118.60
113.24
A
A
A
N1
C6
N6
DA
DA
DA
16
16
16
N
2
2.10
0.30
108.30
110.40
A
A
A
O4'
C1'
N9
DG
DG
DG
18
18
18
N
2
4.35
0.30
108.30
112.65
A
A
A
O4'
C1'
N9
DG
DG
DG
19
19
19
N
2
2.40
0.30
108.30
110.70
A
A
A
O4'
C1'
N1
DT
DT
DT
20
20
20
N
2
-3.75
0.60
122.90
119.15
A
A
A
C6
C5
C7
DT
DT
DT
20
20
20
N
3
2.44
0.30
108.30
110.74
A
A
A
O4'
C1'
N1
DT
DT
DT
1
1
1
N
3
-3.67
0.60
122.90
119.23
A
A
A
C6
C5
C7
DT
DT
DT
1
1
1
N
3
3.77
0.30
108.30
112.07
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
3
3.67
0.50
117.70
121.37
A
A
A
C5
C6
N1
DA
DA
DA
2
2
2
N
3
2.25
0.30
108.30
110.55
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
3
2.75
0.30
108.30
111.05
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
3
-3.04
0.50
117.00
113.96
A
A
A
C4
C5
C6
DA
DA
DA
6
6
6
N
3
3.55
0.50
117.70
121.25
A
A
A
C5
C6
N1
DA
DA
DA
6
6
6
N
3
-5.00
0.60
118.60
113.60
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
3
2.19
0.30
108.30
110.49
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
3
-5.03
0.70
121.90
116.87
A
A
A
N3
C2
O2
DC
DC
DC
7
7
7
N
3
3.23
0.30
108.30
111.53
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
3
2.25
0.30
108.30
110.55
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
3
2.80
0.30
108.30
111.10
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
3
2.40
0.30
108.30
110.70
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
3
-4.87
0.70
121.90
117.03
A
A
A
N3
C2
O2
DC
DC
DC
11
11
11
N
3
2.74
0.30
108.30
111.04
A
A
A
O4'
C1'
N9
DG
DG
DG
12
12
12
N
3
2.00
0.30
108.30
110.30
A
A
A
O4'
C1'
N9
DG
DG
DG
14
14
14
N
3
3.28
0.30
108.30
111.58
A
A
A
O4'
C1'
N1
DC
DC
DC
15
15
15
N
3
-4.77
0.70
121.90
117.13
A
A
A
N3
C2
O2
DC
DC
DC
15
15
15
N
3
-3.00
0.50
117.00
114.00
A
A
A
C4
C5
C6
DA
DA
DA
16
16
16
N
3
3.63
0.50
117.70
121.33
A
A
A
C5
C6
N1
DA
DA
DA
16
16
16
N
3
-6.14
0.60
118.60
112.46
A
A
A
N1
C6
N6
DA
DA
DA
16
16
16
N
3
2.20
0.30
108.30
110.50
A
A
A
O4'
C1'
N9
DG
DG
DG
18
18
18
N
3
3.96
0.30
108.30
112.26
A
A
A
O4'
C1'
N9
DG
DG
DG
19
19
19
N
3
1.94
0.30
108.30
110.24
A
A
A
O4'
C1'
N1
DT
DT
DT
20
20
20
N
3
-3.70
0.60
122.90
119.20
A
A
A
C6
C5
C7
DT
DT
DT
20
20
20
N
4
3.64
0.30
108.30
111.94
A
A
A
O4'
C1'
N1
DT
DT
DT
1
1
1
N
4
-3.68
0.60
122.90
119.22
A
A
A
C6
C5
C7
DT
DT
DT
1
1
1
N
4
4.15
0.30
108.30
112.45
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
4
3.78
0.50
117.70
121.48
A
A
A
C5
C6
N1
DA
DA
DA
2
2
2
N
4
3.12
0.30
108.30
111.42
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
4
-3.16
0.50
117.00
113.84
A
A
A
C4
C5
C6
DA
DA
DA
6
6
6
N
4
3.57
0.50
117.70
121.27
A
A
A
C5
C6
N1
DA
DA
DA
6
6
6
N
4
-5.25
0.60
118.60
113.35
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
4
-5.01
0.70
121.90
116.89
A
A
A
N3
C2
O2
DC
DC
DC
7
7
7
N
4
2.88
0.30
108.30
111.18
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
4
2.18
0.30
108.30
110.48
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
4
2.41
0.30
108.30
110.71
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
4
2.31
0.30
108.30
110.61
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
4
-4.79
0.70
121.90
117.11
A
A
A
N3
C2
O2
DC
DC
DC
11
11
11
N
4
2.09
0.30
108.30
110.39
A
A
A
O4'
C1'
N9
DG
DG
DG
12
12
12
N
4
2.28
0.30
108.30
110.58
A
A
A
O4'
C1'
N9
DG
DG
DG
14
14
14
N
4
3.34
0.30
108.30
111.64
A
A
A
O4'
C1'
N1
DC
DC
DC
15
15
15
N
4
-4.81
0.70
121.90
117.09
A
A
A
N3
C2
O2
DC
DC
DC
15
15
15
N
4
3.33
0.50
117.70
121.03
A
A
A
C5
C6
N1
DA
DA
DA
16
16
16
N
4
-4.86
0.60
118.60
113.74
A
A
A
N1
C6
N6
DA
DA
DA
16
16
16
N
4
2.18
0.30
108.30
110.48
A
A
A
O4'
C1'
N9
DG
DG
DG
18
18
18
N
4
4.31
0.30
108.30
112.61
A
A
A
O4'
C1'
N9
DG
DG
DG
19
19
19
N
4
2.50
0.30
108.30
110.80
A
A
A
O4'
C1'
N1
DT
DT
DT
20
20
20
N
4
-3.76
0.60
122.90
119.14
A
A
A
C6
C5
C7
DT
DT
DT
20
20
20
N
5
2.51
0.30
108.30
110.81
A
A
A
O4'
C1'
N1
DT
DT
DT
1
1
1
N
5
3.89
0.30
108.30
112.19
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
5
3.76
0.50
117.70
121.46
A
A
A
C5
C6
N1
DA
DA
DA
2
2
2
N
5
2.91
0.30
108.30
111.21
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
5
-3.08
0.50
117.00
113.92
A
A
A
C4
C5
C6
DA
DA
DA
6
6
6
N
5
3.56
0.50
117.70
121.26
A
A
A
C5
C6
N1
DA
DA
DA
6
6
6
N
5
-4.98
0.60
118.60
113.62
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
5
-4.99
0.70
121.90
116.91
A
A
A
N3
C2
O2
DC
DC
DC
7
7
7
N
5
3.06
0.30
108.30
111.36
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
5
2.49
0.30
108.30
110.79
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
5
2.58
0.30
108.30
110.88
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
5
2.52
0.30
108.30
110.82
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
5
-4.85
0.70
121.90
117.05
A
A
A
N3
C2
O2
DC
DC
DC
11
11
11
N
5
3.79
0.30
108.30
112.09
A
A
A
O4'
C1'
N9
DG
DG
DG
12
12
12
N
5
1.88
0.30
108.30
110.18
A
A
A
O4'
C1'
N9
DG
DG
DG
13
13
13
N
5
1.94
0.30
108.30
110.24
A
A
A
O4'
C1'
N9
DG
DG
DG
14
14
14
N
5
3.27
0.30
108.30
111.57
A
A
A
O4'
C1'
N1
DC
DC
DC
15
15
15
N
5
-4.81
0.70
121.90
117.09
A
A
A
N3
C2
O2
DC
DC
DC
15
15
15
N
5
3.40
0.50
117.70
121.10
A
A
A
C5
C6
N1
DA
DA
DA
16
16
16
N
5
-4.89
0.60
118.60
113.71
A
A
A
N1
C6
N6
DA
DA
DA
16
16
16
N
5
4.01
0.30
108.30
112.31
A
A
A
O4'
C1'
N9
DG
DG
DG
19
19
19
N
5
2.49
0.30
108.30
110.79
A
A
A
O4'
C1'
N1
DT
DT
DT
20
20
20
N
5
-3.72
0.60
122.90
119.18
A
A
A
C6
C5
C7
DT
DT
DT
20
20
20
N
6
2.46
0.30
108.30
110.76
A
A
A
O4'
C1'
N1
DT
DT
DT
1
1
1
N
6
-3.60
0.60
122.90
119.30
A
A
A
C6
C5
C7
DT
DT
DT
1
1
1
N
6
4.10
0.30
108.30
112.40
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
6
3.74
0.50
117.70
121.44
A
A
A
C5
C6
N1
DA
DA
DA
2
2
2
N
6
2.98
0.30
108.30
111.28
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
6
-3.06
0.50
117.00
113.94
A
A
A
C4
C5
C6
DA
DA
DA
6
6
6
N
6
3.61
0.50
117.70
121.31
A
A
A
C5
C6
N1
DA
DA
DA
6
6
6
N
6
-5.02
0.60
118.60
113.58
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
6
1.91
0.30
108.30
110.21
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
6
-5.09
0.70
121.90
116.81
A
A
A
N3
C2
O2
DC
DC
DC
7
7
7
N
6
3.67
0.30
108.30
111.97
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
6
2.08
0.30
108.30
110.38
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
6
2.48
0.30
108.30
110.78
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
6
2.35
0.30
108.30
110.65
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
6
-4.86
0.70
121.90
117.04
A
A
A
N3
C2
O2
DC
DC
DC
11
11
11
N
6
2.06
0.30
108.30
110.36
A
A
A
O4'
C1'
N9
DG
DG
DG
12
12
12
N
6
1.81
0.30
108.30
110.11
A
A
A
O4'
C1'
N9
DG
DG
DG
14
14
14
N
6
3.43
0.30
108.30
111.73
A
A
A
O4'
C1'
N1
DC
DC
DC
15
15
15
N
6
-4.70
0.70
121.90
117.20
A
A
A
N3
C2
O2
DC
DC
DC
15
15
15
N
6
3.47
0.50
117.70
121.17
A
A
A
C5
C6
N1
DA
DA
DA
16
16
16
N
6
-5.36
0.60
118.60
113.24
A
A
A
N1
C6
N6
DA
DA
DA
16
16
16
N
6
2.07
0.30
108.30
110.37
A
A
A
O4'
C1'
N9
DG
DG
DG
18
18
18
N
6
4.31
0.30
108.30
112.61
A
A
A
O4'
C1'
N9
DG
DG
DG
19
19
19
N
6
2.36
0.30
108.30
110.66
A
A
A
O4'
C1'
N1
DT
DT
DT
20
20
20
N
6
-3.70
0.60
122.90
119.20
A
A
A
C6
C5
C7
DT
DT
DT
20
20
20
N
7
2.52
0.30
108.30
110.82
A
A
A
O4'
C1'
N1
DT
DT
DT
1
1
1
N
7
-3.64
0.60
122.90
119.26
A
A
A
C6
C5
C7
DT
DT
DT
1
1
1
N
7
4.13
0.30
108.30
112.43
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
7
3.75
0.50
117.70
121.45
A
A
A
C5
C6
N1
DA
DA
DA
2
2
2
N
7
3.05
0.30
108.30
111.35
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
7
-3.09
0.50
117.00
113.91
A
A
A
C4
C5
C6
DA
DA
DA
6
6
6
N
7
3.51
0.50
117.70
121.21
A
A
A
C5
C6
N1
DA
DA
DA
6
6
6
N
7
-5.19
0.60
118.60
113.41
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
7
-4.99
0.70
121.90
116.91
A
A
A
N3
C2
O2
DC
DC
DC
7
7
7
N
7
2.83
0.30
108.30
111.13
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
7
2.15
0.30
108.30
110.45
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
7
2.49
0.30
108.30
110.79
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
7
2.41
0.30
108.30
110.71
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
7
-4.77
0.70
121.90
117.13
A
A
A
N3
C2
O2
DC
DC
DC
11
11
11
N
7
2.15
0.30
108.30
110.45
A
A
A
O4'
C1'
N9
DG
DG
DG
12
12
12
N
7
2.34
0.30
108.30
110.64
A
A
A
O4'
C1'
N9
DG
DG
DG
14
14
14
N
7
3.33
0.30
108.30
111.63
A
A
A
O4'
C1'
N1
DC
DC
DC
15
15
15
N
7
-4.84
0.70
121.90
117.06
A
A
A
N3
C2
O2
DC
DC
DC
15
15
15
N
7
3.27
0.50
117.70
120.97
A
A
A
C5
C6
N1
DA
DA
DA
16
16
16
N
7
-4.79
0.60
118.60
113.81
A
A
A
N1
C6
N6
DA
DA
DA
16
16
16
N
7
2.08
0.30
108.30
110.38
A
A
A
O4'
C1'
N9
DG
DG
DG
18
18
18
N
7
4.34
0.30
108.30
112.64
A
A
A
O4'
C1'
N9
DG
DG
DG
19
19
19
N
7
2.46
0.30
108.30
110.76
A
A
A
O4'
C1'
N1
DT
DT
DT
20
20
20
N
7
-3.70
0.60
122.90
119.20
A
A
A
C6
C5
C7
DT
DT
DT
20
20
20
N
8
2.13
0.30
108.30
110.43
A
A
A
O4'
C1'
N1
DT
DT
DT
1
1
1
N
8
-3.79
0.60
122.90
119.11
A
A
A
C6
C5
C7
DT
DT
DT
1
1
1
N
8
2.67
0.30
108.30
110.97
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
8
-3.07
0.50
117.00
113.93
A
A
A
C4
C5
C6
DA
DA
DA
2
2
2
N
8
3.73
0.50
117.70
121.43
A
A
A
C5
C6
N1
DA
DA
DA
2
2
2
N
8
-4.99
0.60
118.60
113.61
A
A
A
N1
C6
N6
DA
DA
DA
2
2
2
N
8
2.48
0.30
108.30
110.78
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
8
1.90
0.30
108.30
110.20
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
8
-3.08
0.50
117.00
113.92
A
A
A
C4
C5
C6
DA
DA
DA
6
6
6
N
8
3.54
0.50
117.70
121.24
A
A
A
C5
C6
N1
DA
DA
DA
6
6
6
N
8
-5.00
0.60
118.60
113.60
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
8
-4.97
0.70
121.90
116.93
A
A
A
N3
C2
O2
DC
DC
DC
7
7
7
N
8
2.39
0.30
108.30
110.69
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
8
2.13
0.30
108.30
110.43
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
8
2.41
0.30
108.30
110.71
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
8
2.37
0.30
108.30
110.67
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
8
-4.78
0.70
121.90
117.12
A
A
A
N3
C2
O2
DC
DC
DC
11
11
11
N
8
2.78
0.30
108.30
111.08
A
A
A
O4'
C1'
N9
DG
DG
DG
14
14
14
N
8
2.92
0.30
108.30
111.22
A
A
A
O4'
C1'
N1
DC
DC
DC
15
15
15
N
8
-4.77
0.70
121.90
117.13
A
A
A
N3
C2
O2
DC
DC
DC
15
15
15
N
8
3.02
0.30
108.30
111.32
A
A
A
O4'
C1'
N9
DA
DA
DA
16
16
16
N
8
-3.48
0.50
117.00
113.52
A
A
A
C4
C5
C6
DA
DA
DA
16
16
16
N
8
3.80
0.50
117.70
121.50
A
A
A
C5
C6
N1
DA
DA
DA
16
16
16
N
8
-5.70
0.60
118.60
112.90
A
A
A
N1
C6
N6
DA
DA
DA
16
16
16
N
8
2.77
0.30
108.30
111.07
A
A
A
O4'
C1'
N9
DG
DG
DG
17
17
17
N
8
2.34
0.30
108.30
110.64
A
A
A
O4'
C1'
N9
DG
DG
DG
18
18
18
N
8
4.12
0.30
108.30
112.42
A
A
A
O4'
C1'
N9
DG
DG
DG
19
19
19
N
8
2.44
0.30
108.30
110.74
A
A
A
O4'
C1'
N1
DT
DT
DT
20
20
20
N
8
-3.75
0.60
122.90
119.15
A
A
A
C6
C5
C7
DT
DT
DT
20
20
20
N
9
2.45
0.30
108.30
110.75
A
A
A
O4'
C1'
N1
DT
DT
DT
1
1
1
N
9
-3.72
0.60
122.90
119.18
A
A
A
C6
C5
C7
DT
DT
DT
1
1
1
N
9
3.88
0.30
108.30
112.18
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
9
3.71
0.50
117.70
121.41
A
A
A
C5
C6
N1
DA
DA
DA
2
2
2
N
9
2.77
0.30
108.30
111.07
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
9
2.12
0.30
108.30
110.42
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
9
-3.05
0.50
117.00
113.95
A
A
A
C4
C5
C6
DA
DA
DA
6
6
6
N
9
3.58
0.50
117.70
121.28
A
A
A
C5
C6
N1
DA
DA
DA
6
6
6
N
9
-5.08
0.60
118.60
113.52
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
9
-5.04
0.70
121.90
116.86
A
A
A
N3
C2
O2
DC
DC
DC
7
7
7
N
9
2.42
0.30
108.30
110.72
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
9
2.08
0.30
108.30
110.38
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
9
2.38
0.30
108.30
110.68
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
9
2.37
0.30
108.30
110.67
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
9
-4.79
0.70
121.90
117.11
A
A
A
N3
C2
O2
DC
DC
DC
11
11
11
N
9
2.79
0.30
108.30
111.09
A
A
A
O4'
C1'
N9
DG
DG
DG
14
14
14
N
9
2.84
0.30
108.30
111.14
A
A
A
O4'
C1'
N1
DC
DC
DC
15
15
15
N
9
-4.76
0.70
121.90
117.14
A
A
A
N3
C2
O2
DC
DC
DC
15
15
15
N
9
3.21
0.30
108.30
111.51
A
A
A
O4'
C1'
N9
DA
DA
DA
16
16
16
N
9
-3.45
0.50
117.00
113.55
A
A
A
C4
C5
C6
DA
DA
DA
16
16
16
N
9
3.77
0.50
117.70
121.47
A
A
A
C5
C6
N1
DA
DA
DA
16
16
16
N
9
-5.70
0.60
118.60
112.90
A
A
A
N1
C6
N6
DA
DA
DA
16
16
16
N
9
2.84
0.30
108.30
111.14
A
A
A
O4'
C1'
N9
DG
DG
DG
17
17
17
N
9
2.11
0.30
108.30
110.41
A
A
A
O4'
C1'
N9
DG
DG
DG
18
18
18
N
9
4.06
0.30
108.30
112.36
A
A
A
O4'
C1'
N9
DG
DG
DG
19
19
19
N
9
2.28
0.30
108.30
110.58
A
A
A
O4'
C1'
N1
DT
DT
DT
20
20
20
N
9
-3.78
0.60
122.90
119.12
A
A
A
C6
C5
C7
DT
DT
DT
20
20
20
N
10
2.15
0.30
108.30
110.45
A
A
A
O4'
C1'
N1
DT
DT
DT
1
1
1
N
10
-3.64
0.60
122.90
119.26
A
A
A
C6
C5
C7
DT
DT
DT
1
1
1
N
10
3.31
0.30
108.30
111.61
A
A
A
O4'
C1'
N9
DA
DA
DA
2
2
2
N
10
3.82
0.50
117.70
121.52
A
A
A
C5
C6
N1
DA
DA
DA
2
2
2
N
10
-3.76
0.60
118.60
114.84
A
A
A
N1
C6
N6
DA
DA
DA
2
2
2
N
10
2.63
0.30
108.30
110.93
A
A
A
O4'
C1'
N9
DG
DG
DG
3
3
3
N
10
2.31
0.30
108.30
110.61
A
A
A
O4'
C1'
N9
DG
DG
DG
4
4
4
N
10
3.48
0.50
117.70
121.18
A
A
A
C5
C6
N1
DA
DA
DA
6
6
6
N
10
-4.90
0.60
118.60
113.70
A
A
A
N1
C6
N6
DA
DA
DA
6
6
6
N
10
2.33
0.30
108.30
110.63
A
A
A
O4'
C1'
N1
DC
DC
DC
7
7
7
N
10
-4.91
0.70
121.90
116.99
A
A
A
N3
C2
O2
DC
DC
DC
7
7
7
N
10
3.01
0.30
108.30
111.31
A
A
A
O4'
C1'
N9
DG
DG
DG
8
8
8
N
10
2.56
0.30
108.30
110.86
A
A
A
O4'
C1'
N9
DG
DG
DG
9
9
9
N
10
2.92
0.30
108.30
111.22
A
A
A
O4'
C1'
N9
DG
DG
DG
10
10
10
N
10
2.43
0.30
108.30
110.73
A
A
A
O4'
C1'
N1
DC
DC
DC
11
11
11
N
10
-4.92
0.70
121.90
116.98
A
A
A
N3
C2
O2
DC
DC
DC
11
11
11
N
10
3.61
0.30
108.30
111.91
A
A
A
O4'
C1'
N9
DG
DG
DG
12
12
12
N
10
2.14
0.30
108.30
110.44
A
A
A
O4'
C1'
N9
DG
DG
DG
13
13
13
N
10
2.13
0.30
108.30
110.43
A
A
A
O4'
C1'
N9
DG
DG
DG
14
14
14
N
10
2.98
0.30
108.30
111.28
A
A
A
O4'
C1'
N1
DC
DC
DC
15
15
15
N
10
-4.82
0.70
121.90
117.08
A
A
A
N3
C2
O2
DC
DC
DC
15
15
15
N
10
3.01
0.30
108.30
111.31
A
A
A
O4'
C1'
N9
DA
DA
DA
16
16
16
N
10
-3.47
0.50
117.00
113.53
A
A
A
C4
C5
C6
DA
DA
DA
16
16
16
N
10
3.74
0.50
117.70
121.44
A
A
A
C5
C6
N1
DA
DA
DA
16
16
16
N
10
-5.70
0.60
118.60
112.90
A
A
A
N1
C6
N6
DA
DA
DA
16
16
16
N
10
2.89
0.30
108.30
111.19
A
A
A
O4'
C1'
N9
DG
DG
DG
17
17
17
N
10
2.75
0.30
108.30
111.05
A
A
A
O4'
C1'
N9
DG
DG
DG
18
18
18
N
10
3.52
0.30
108.30
111.82
A
A
A
O4'
C1'
N9
DG
DG
DG
19
19
19
N
10
2.39
0.30
108.30
110.69
A
A
A
O4'
C1'
N1
DT
DT
DT
20
20
20
N
10
-3.74
0.60
122.90
119.16
A
A
A
C6
C5
C7
DT
DT
DT
20
20
20
N
N
M2 G-quadruplex 10 wt% PEG8000
1
N
N
hydrog
DA-DG MISPAIR
A
DA
2
A
N6
DA
2
1_555
A
DG
12
A
O6
DG
12
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
N1
DG
3
1_555
A
DG
8
A
O6
DG
8
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
N2
DG
3
1_555
A
DG
8
A
N7
DG
8
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
N7
DG
3
1_555
A
DG
17
A
N2
DG
17
1_555
hydrog
TYPE_6_PAIR
A
DG
3
A
O6
DG
3
1_555
A
DG
17
A
N1
DG
17
1_555
hydrog
DG-DA MISPAIR
A
DG
4
A
N2
DG
4
1_555
A
DA
6
A
N1
DA
6
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
N1
DG
4
1_555
A
DG
9
A
O6
DG
9
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
N2
DG
4
1_555
A
DG
9
A
N7
DG
9
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
N7
DG
4
1_555
A
DG
18
A
N2
DG
18
1_555
hydrog
TYPE_6_PAIR
A
DG
4
A
O6
DG
4
1_555
A
DG
18
A
N1
DG
18
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
N1
DG
5
1_555
A
DG
10
A
O6
DG
10
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
N2
DG
5
1_555
A
DG
10
A
N7
DG
10
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
N7
DG
5
1_555
A
DG
19
A
N2
DG
19
1_555
hydrog
TYPE_6_PAIR
A
DG
5
A
O6
DG
5
1_555
A
DG
19
A
N1
DG
19
1_555
hydrog
DA-DG MISPAIR
A
DA
6
A
N6
DA
6
1_555
A
DG
9
A
N7
DG
9
1_555
hydrog
TYPE_6_PAIR
A
DG
8
A
N1
DG
8
1_555
A
DG
12
A
O6
DG
12
1_555
hydrog
TYPE_6_PAIR
A
DG
8
A
N2
DG
8
1_555
A
DG
12
A
N7
DG
12
1_555
hydrog
TYPE_6_PAIR
A
DG
9
A
N1
DG
9
1_555
A
DG
13
A
O6
DG
13
1_555
hydrog
TYPE_6_PAIR
A
DG
9
A
N2
DG
9
1_555
A
DG
13
A
N7
DG
13
1_555
hydrog
TYPE_6_PAIR
A
DG
10
A
N1
DG
10
1_555
A
DG
14
A
O6
DG
14
1_555
hydrog
TYPE_6_PAIR
A
DG
10
A
N2
DG
10
1_555
A
DG
14
A
N7
DG
14
1_555
hydrog
TYPE_6_PAIR
A
DG
12
A
N1
DG
12
1_555
A
DG
17
A
O6
DG
17
1_555
hydrog
TYPE_6_PAIR
A
DG
12
A
N2
DG
12
1_555
A
DG
17
A
N7
DG
17
1_555
hydrog
TYPE_6_PAIR
A
DG
13
A
N1
DG
13
1_555
A
DG
18
A
O6
DG
18
1_555
hydrog
TYPE_6_PAIR
A
DG
13
A
N2
DG
13
1_555
A
DG
18
A
N7
DG
18
1_555
hydrog
TYPE_6_PAIR
A
DG
14
A
N1
DG
14
1_555
A
DG
19
A
O6
DG
19
1_555
hydrog
TYPE_6_PAIR
A
DG
14
A
N2
DG
14
1_555
A
DG
19
A
N7
DG
19
1_555
DNA
quadruplex, cosolute, DNA
5NYU
PDB
1
1
5NYU
1
20
5NYU
1
20
5NYU
A
1
1
20