0.011967
0.006909
0.000000
0.000000
0.013819
0.000000
0.000000
0.000000
0.010120
0.00000
0.00000
0.00000
Huang, L.
Wang, J.
Lilley, D.M.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
83.560
83.560
98.814
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C9 H13 Br N3 O8 P
402.093
n
5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
RNA linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C H5 N3
59.070
GUANIDINE
non-polymer
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
O
N
39
N
P
N
40
N
O
N
41
N
O
N
42
N
O
N
43
N
C
N
44
R
C
N
45
N
O
N
46
S
C
N
47
N
O
N
48
R
C
N
49
N
O
N
50
R
C
N
51
N
N
N
52
N
C
N
53
N
O
N
54
N
N
N
55
N
C
N
56
N
N
N
57
N
C
N
58
N
C
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
O
N
74
N
P
N
75
N
O
N
76
N
O
N
77
N
O
N
78
N
C
N
79
R
C
N
80
N
O
N
81
S
C
N
82
N
O
N
83
R
C
N
84
N
O
N
85
R
C
N
86
N
N
N
87
N
C
N
88
N
O
N
89
N
N
N
90
N
C
N
91
N
N
N
92
N
C
N
93
N
C
N
94
N
BR
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
O
N
109
N
P
N
110
N
O
N
111
N
O
N
112
N
O
N
113
N
C
N
114
R
C
N
115
N
O
N
116
S
C
N
117
N
O
N
118
R
C
N
119
N
O
N
120
R
C
Y
121
N
N
Y
122
N
C
Y
123
N
N
Y
124
N
C
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
C
N
129
N
N
N
130
N
N
Y
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
C
N
147
N
N
N
148
N
N
N
149
N
N
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
O
N
156
N
P
N
157
N
O
N
158
N
O
N
159
N
O
N
160
N
C
N
161
R
C
N
162
N
O
N
163
S
C
N
164
N
O
N
165
R
C
N
166
N
O
N
167
R
C
N
168
N
N
N
169
N
C
N
170
N
O
N
171
N
N
N
172
N
C
N
173
N
O
N
174
N
C
N
175
N
C
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
doub
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
doub
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
Y
136
N
sing
Y
137
N
sing
Y
138
N
doub
N
139
N
sing
Y
140
N
sing
N
141
N
sing
Y
142
N
doub
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
doub
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
doub
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
US
Cell Chem Biol
2451-9456
24
1407
1415.e2
10.1016/j.chembiol.2017.08.021
28988949
Structure of the Guanidine III Riboswitch.
2017
10.2210/pdb5nz6/pdb
pdb_00005nz6
100
1
PIXEL
2017-04-24
DECTRIS PILATUS3 6M
SINGLE WAVELENGTH
M
x-ray
1
0.92019
1.0
I03
Diamond
0.92019
SYNCHROTRON
DIAMOND BEAMLINE I03
13420.789
RNA (41-MER)
1
syn
polymer
59.070
GUANIDINE
1
syn
non-polymer
no
yes
C(CBV)GGACGAGGUGCGCCGUACCCGGUCACGACAAGACGG(CBV)GC
CCGGACGAGGUGCGCCGUACCCGGUCACGACAAGACGGCGC
A
polyribonucleotide
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1
VAPOR DIFFUSION, HANGING DROP
7
60% v/v Tacsimate pH 7.0
293
0.176
1
19
A
1
A
24
-2.368
A_C1:G24_A
1
-0.527
0.219
0.017
-0.344
2.038
1
19
A
2
A
23
-7.915
A_CBV2:G23_A
2
-9.704
-0.638
0.649
-0.232
-1.656
1
19
A
3
A
22
3.361
A_G3:C22_A
3
-1.871
-0.108
-0.015
-0.277
4.094
1
19
A
4
A
21
-2.402
A_G4:C21_A
4
-1.494
-0.161
-0.060
-0.364
-11.626
1
19
A
29
A
20
2.888
A_G29:C20_A
5
-4.458
0.016
0.088
-0.200
-7.978
4
5
A
5
A
19
-101.159
A_A5:A19_A
6
-13.122
4.754
-0.862
0.571
10.929
1
20
A
35
A
18
-5.856
A_A35:U18_A
7
-1.182
0.109
0.270
-0.232
-1.836
1
19
A
36
A
17
-0.584
A_C36:G17_A
8
-5.122
0.383
0.563
-0.337
-0.544
1
19
A
37
A
16
0.037
A_G37:C16_A
9
-0.890
-0.405
-0.064
-0.393
-1.087
1
19
A
38
A
15
-4.755
A_G38:C15_A
10
0.609
-0.216
0.054
-0.464
2.230
1
19
A
39
A
14
-0.706
A_CBV39:G14_A
11
-5.349
-0.532
-0.062
-0.138
-0.870
1
19
A
40
A
13
-0.745
A_G40:C13_A
12
-8.966
-0.219
0.319
-0.393
-2.251
1
22
A
41
A
12
-10.109
A_C41:G12_A
13
-13.400
-0.566
0.062
-1.169
2.677
32.501
A
A
1
2
7.903
A
A
24
23
3.037
4.402
0.400
-2.074
AA_C1CBV2:G23G24_AA
1
-3.523
6.324
32.022
-4.383
-1.258
2.432
31.935
A
A
2
3
14.423
A
A
23
22
3.078
7.854
-0.163
-2.266
AA_CBV2G3:C22G23_AA
2
1.710
-3.140
30.933
-5.339
0.562
2.706
30.909
A
A
3
4
9.748
A
A
22
21
3.097
5.167
0.049
-2.068
AA_G3G4:C21C22_AA
3
-2.271
4.285
30.401
-4.776
-0.486
3.537
44.094
A
A
4
29
0.820
A
A
21
20
3.489
0.615
-0.998
-1.431
AA_G4G29:C20C21_AA
4
-3.644
4.859
43.946
-1.969
0.961
2.154
35.924
A
A
29
5
13.474
A
A
20
19
3.397
8.180
-3.157
-1.960
AA_G29A5:A19C20_AA
5
7.640
-12.584
34.190
-4.196
6.070
3.117
72.623
A
A
5
35
2.858
A
A
19
18
3.355
3.376
-1.528
-0.866
AA_A5A35:U18A19_AA
6
9.752
-8.255
71.986
-0.842
1.609
3.576
34.369
A
A
35
36
-0.025
A
A
18
17
3.558
-0.015
-0.456
-1.455
AA_A35C36:G17U18_AA
7
-7.394
12.606
33.588
-2.460
-0.503
3.465
31.238
A
A
36
37
-4.286
A
A
17
16
3.300
-2.305
0.449
-2.246
AA_C36G37:C16G17_AA
8
0.963
-1.790
31.140
-3.719
-0.644
3.121
24.985
A
A
37
38
5.301
A
A
16
15
3.288
2.284
-0.658
-2.350
AA_G37G38:C15C16_AA
9
-3.312
7.687
24.664
-6.103
0.547
3.030
28.954
A
A
38
39
2.037
A
A
15
14
3.118
1.018
0.322
-2.289
AA_G38CBV39:G14C15_AA
10
-0.584
1.168
28.930
-4.789
-0.766
3.403
34.471
A
A
39
40
1.073
A
A
14
13
3.348
0.634
-1.048
-2.155
AA_CBV39G40:C13G14_AA
11
-3.868
6.541
34.255
-3.739
1.146
3.001
23.342
A
A
40
41
9.750
A
A
13
12
3.336
3.881
0.471
-1.807
AA_G40C41:G12C13_AA
12
6.120
-15.374
22.204
-5.783
0.912
citation
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Database references
Data collection
Database references
Refinement description
1
0
2017-10-18
1
1
2017-11-29
1
2
2024-01-17
_citation.journal_volume
_citation.page_first
_citation.page_last
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
N
PDBE
Y
PDBE
2017-05-12
REL
REL
GAI
GUANIDINE
2021
Thermobifida fusca
sample
1
41
5NWQ
PDB
experimental model
GAI
1
2
GAI
GAI
101
A
C
1
n
1
C
1
A
CBV
2
n
2
CBV
2
A
G
3
n
3
G
3
A
G
4
n
4
G
4
A
A
5
n
5
A
5
A
C
6
n
6
C
6
A
G
7
n
7
G
7
A
A
8
n
8
A
8
A
G
9
n
9
G
9
A
G
10
n
10
G
10
A
U
11
n
11
U
11
A
G
12
n
12
G
12
A
C
13
n
13
C
13
A
G
14
n
14
G
14
A
C
15
n
15
C
15
A
C
16
n
16
C
16
A
G
17
n
17
G
17
A
U
18
n
18
U
18
A
A
19
n
19
A
19
A
C
20
n
20
C
20
A
C
21
n
21
C
21
A
C
22
n
22
C
22
A
G
23
n
23
G
23
A
G
24
n
24
G
24
A
U
25
n
25
U
25
A
C
26
n
26
C
26
A
A
27
n
27
A
27
A
C
28
n
28
C
28
A
G
29
n
29
G
29
A
A
30
n
30
A
30
A
C
31
n
31
C
31
A
A
32
n
32
A
32
A
A
33
n
33
A
33
A
G
34
n
34
G
34
A
A
35
n
35
A
35
A
C
36
n
36
C
36
A
G
37
n
37
G
37
A
G
38
n
38
G
38
A
CBV
39
n
39
CBV
39
A
G
40
n
40
G
40
A
C
41
n
41
C
41
A
1.0117
-1.0100
-0.7340
7.8488
-0.4022
0.6486
0.1168
-0.9113
0.3122
0.2831
-0.0993
1.1979
-0.3561
0.2593
-0.0137
1.0534
-0.4480
-0.1971
1.0217
0.1308
0.8361
refined
-15.9453
-11.5367
13.3855
X-RAY DIFFRACTION
2.0028
1.7060
0.0464
3.2444
-0.3404
1.4766
-0.0980
-0.4993
-0.1275
-0.1730
-0.0857
-0.2104
-0.3518
0.4247
0.2232
1.1593
-0.4348
-0.0906
0.9236
0.0017
0.9338
refined
-19.9275
-19.8592
15.2363
X-RAY DIFFRACTION
4.9682
-0.3633
-1.5910
7.3736
-1.1503
4.3941
1.1341
-1.0148
-0.0633
0.3373
-0.7924
-0.3976
-0.8561
0.9552
-0.2907
1.4416
-0.4805
-0.1727
0.9645
0.0029
1.1012
refined
-9.8593
2.0031
11.1299
X-RAY DIFFRACTION
6.7589
0.7068
-3.9319
1.3726
0.0683
8.6557
-0.2059
1.0512
0.9416
0.8404
0.0581
-0.7922
-0.6338
0.5787
-0.1605
0.9085
-0.5316
-0.2416
1.0174
-0.0103
0.5251
refined
-11.9178
-1.6722
4.0350
X-RAY DIFFRACTION
3.1091
1.0782
-1.2553
1.3616
-0.9433
4.5677
0.2311
-0.4317
-0.7938
0.8089
-1.0965
-1.2338
0.7385
-0.2333
0.6469
0.9279
-0.2521
-0.1550
1.0551
0.2582
0.8867
refined
-5.8553
-15.6292
11.8538
X-RAY DIFFRACTION
6.6749
-0.2094
0.1144
6.5967
-0.6593
5.4475
0.9484
-0.5779
-0.3942
0.2163
-0.4467
1.8989
0.1375
0.5010
-0.2436
1.3779
-0.4424
0.1745
0.6761
0.0250
0.8887
refined
-24.7248
-21.4474
20.0191
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain 'A' and (resid 1 through 10 )
X-RAY DIFFRACTION
2
chain 'A' and (resid 11 through 20 )
X-RAY DIFFRACTION
3
chain 'A' and (resid 21 through 25 )
X-RAY DIFFRACTION
4
chain 'A' and (resid 26 through 30 )
X-RAY DIFFRACTION
5
chain 'A' and (resid 31 through 35 )
X-RAY DIFFRACTION
6
chain 'A' and (resid 36 through 41 )
author_and_software_defined_assembly
PISA
1
monomeric
none
1240
-0
6640
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
A
O3'
O3P
C
CBV
1
2
0.34
1
A
A
O3'
O3P
G
CBV
38
39
0.40
1
A
A
O6
H42
G
C
12
41
0.81
1
A
A
HO3'
P
CBV
G
39
40
1.02
1
A
A
H1
N3
G
C
12
41
1.09
1
A
A
HO2'
H6
A
C
35
36
1.16
1
A
A
HO2'
H5'
G
C
40
41
1.16
1
A
A
C6
H42
G
C
12
41
1.42
1
A
A
H21
O2
G
C
12
41
1.46
1
A
A
O4
HN42
U
CBV
11
39
1.55
1
A
A
O6
N4
G
C
12
41
1.67
1
A
A
C3'
O3P
C
CBV
1
2
1.77
1
A
A
N1
N3
G
C
12
41
1.93
1
A
A
O3'
P
CBV
G
2
3
5.00
1
3.49
0.50
128.60
132.09
A
A
A
N3
C4
C5
G
G
G
4
4
4
N
1
2.78
0.40
106.40
109.18
A
A
A
C8
N9
C4
G
G
G
4
4
4
N
1
4.10
0.60
118.60
122.70
A
A
A
N1
C6
N6
A
A
A
5
5
5
N
1
3.10
0.50
128.60
131.70
A
A
A
N3
C4
C5
G
G
G
14
14
14
N
1
-2.56
0.40
106.40
103.84
A
A
A
C8
N9
C4
G
G
G
29
29
29
N
1
-4.36
0.60
126.00
121.64
A
A
A
N3
C4
N9
G
G
G
29
29
29
N
1
-4.35
0.70
119.90
115.55
A
A
A
N3
C2
N2
G
G
G
29
29
29
N
1
3.04
0.40
106.40
109.44
A
A
A
C8
N9
C4
G
G
G
38
38
38
N
0.2169
0.1912
0.1924
2.940
32.938
789
16177
4.88
98.56
0.49
1
THROUGHOUT
1.33
MOLECULAR REPLACEMENT
30.50
0.90
1.11
5NWQ
2.940
32.938
0
886
4
882
0
0.009
993
1.721
1550
18.285
469
0.070
202
0.010
42
0.4682
0.4107
3.1241
149
2488
97.00
0.2567
0.2268
3.3651
119
2571
98.00
0.2159
0.2101
3.7033
152
2538
99.00
0.2014
0.2007
4.2383
148
2551
99.00
0.2228
0.1647
5.3361
90
2616
99.00
0.1721
0.1574
32.9400
131
2624
100.00
2.94
49.41
5NZ6
16177
1.7
0.965
0.101
0.023
1
18.2
21.57
100
1.658
2.94
2.99
1.7
434
0.964
0.367
1
21.1
100
refinement
PHENIX
(dev_2219: ???)
data reduction
xia2
data scaling
xia2
phasing
PHASER
N
The structure of the thermobifida fusca guanidine III riboswitch with guanidine in space group P3212.
1
N
N
2
N
N
covale
1.621
both
A
C
1
A
O3'
C
1
1_555
A
CBV
2
A
P
CBV
2
1_555
covale
1.604
both
A
G
38
A
O3'
G
38
1_555
A
CBV
39
A
P
CBV
39
1_555
covale
1.576
one
A
CBV
39
A
O3'
CBV
39
1_555
A
G
40
A
P
G
40
1_555
hydrog
WATSON-CRICK
A
C
1
A
N3
C
1
1_555
A
G
24
A
N1
G
24
1_555
hydrog
WATSON-CRICK
A
C
1
A
N4
C
1
1_555
A
G
24
A
O6
G
24
1_555
hydrog
WATSON-CRICK
A
C
1
A
O2
C
1
1_555
A
G
24
A
N2
G
24
1_555
hydrog
WATSON-CRICK
A
CBV
2
A
N3
CBV
2
1_555
A
G
23
A
N1
G
23
1_555
hydrog
WATSON-CRICK
A
CBV
2
A
N4
CBV
2
1_555
A
G
23
A
O6
G
23
1_555
hydrog
WATSON-CRICK
A
CBV
2
A
O2
CBV
2
1_555
A
G
23
A
N2
G
23
1_555
hydrog
WATSON-CRICK
A
G
3
A
N1
G
3
1_555
A
C
22
A
N3
C
22
1_555
hydrog
WATSON-CRICK
A
G
3
A
N2
G
3
1_555
A
C
22
A
O2
C
22
1_555
hydrog
WATSON-CRICK
A
G
3
A
O6
G
3
1_555
A
C
22
A
N4
C
22
1_555
hydrog
WATSON-CRICK
A
G
4
A
N1
G
4
1_555
A
C
21
A
N3
C
21
1_555
hydrog
WATSON-CRICK
A
G
4
A
N2
G
4
1_555
A
C
21
A
O2
C
21
1_555
hydrog
WATSON-CRICK
A
G
4
A
O6
G
4
1_555
A
C
21
A
N4
C
21
1_555
hydrog
TYPE_5_PAIR
A
A
5
A
N1
A
5
1_555
A
A
19
A
N6
A
19
1_555
hydrog
TYPE_5_PAIR
A
A
5
A
N6
A
5
1_555
A
A
19
A
N7
A
19
1_555
hydrog
C-U MISPAIR
A
C
6
A
N4
C
6
1_555
A
U
18
A
O4
U
18
1_555
hydrog
REVERSED WATSON-CRICK
A
C
6
A
N3
C
6
1_555
A
G
34
A
N2
G
34
1_555
hydrog
REVERSED WATSON-CRICK
A
C
6
A
O2
C
6
1_555
A
G
34
A
N1
G
34
1_555
hydrog
TYPE_9_PAIR
A
G
7
A
N1
G
7
1_555
A
A
35
A
N7
A
35
1_555
hydrog
TYPE_9_PAIR
A
G
7
A
O6
G
7
1_555
A
A
35
A
N6
A
35
1_555
hydrog
A-C MISPAIR
A
A
8
A
N1
A
8
1_555
A
C
36
A
N4
C
36
1_555
hydrog
G-C PAIR
A
G
9
A
O6
G
9
1_555
A
C
16
A
N4
C
16
1_555
hydrog
TYPE_6_PAIR
A
G
9
A
N1
G
9
1_555
A
G
37
A
O6
G
37
1_555
hydrog
TYPE_6_PAIR
A
G
9
A
N2
G
9
1_555
A
G
37
A
N7
G
37
1_555
hydrog
G-C PAIR
A
G
10
A
O6
G
10
1_555
A
C
15
A
N4
C
15
1_555
hydrog
TYPE_6_PAIR
A
G
10
A
N1
G
10
1_555
A
G
38
A
O6
G
38
1_555
hydrog
TYPE_6_PAIR
A
G
10
A
N2
G
10
1_555
A
G
38
A
N7
G
38
1_555
hydrog
U-G MISPAIR
A
U
11
A
N3
U
11
1_555
A
G
14
A
O6
G
14
1_555
hydrog
U-CBV MISPAIR
A
U
11
A
O4
U
11
1_555
A
CBV
39
A
N4
CBV
39
1_555
hydrog
REVERSED WATSON-CRICK
A
G
12
A
N1
G
12
1_555
A
C
41
A
O2
C
41
1_555
hydrog
REVERSED WATSON-CRICK
A
G
12
A
N2
G
12
1_555
A
C
41
A
N3
C
41
1_555
hydrog
WATSON-CRICK
A
C
13
A
N3
C
13
1_555
A
G
40
A
N1
G
40
1_555
hydrog
WATSON-CRICK
A
C
13
A
N4
C
13
1_555
A
G
40
A
O6
G
40
1_555
hydrog
WATSON-CRICK
A
C
13
A
O2
C
13
1_555
A
G
40
A
N2
G
40
1_555
hydrog
WATSON-CRICK
A
G
14
A
N1
G
14
1_555
A
CBV
39
A
N3
CBV
39
1_555
hydrog
WATSON-CRICK
A
G
14
A
N2
G
14
1_555
A
CBV
39
A
O2
CBV
39
1_555
hydrog
WATSON-CRICK
A
G
14
A
O6
G
14
1_555
A
CBV
39
A
N4
CBV
39
1_555
hydrog
WATSON-CRICK
A
C
15
A
N3
C
15
1_555
A
G
38
A
N1
G
38
1_555
hydrog
WATSON-CRICK
A
C
15
A
N4
C
15
1_555
A
G
38
A
O6
G
38
1_555
hydrog
WATSON-CRICK
A
C
15
A
O2
C
15
1_555
A
G
38
A
N2
G
38
1_555
hydrog
WATSON-CRICK
A
C
16
A
N3
C
16
1_555
A
G
37
A
N1
G
37
1_555
hydrog
WATSON-CRICK
A
C
16
A
N4
C
16
1_555
A
G
37
A
O6
G
37
1_555
hydrog
WATSON-CRICK
A
C
16
A
O2
C
16
1_555
A
G
37
A
N2
G
37
1_555
hydrog
WATSON-CRICK
A
G
17
A
N1
G
17
1_555
A
C
36
A
N3
C
36
1_555
hydrog
WATSON-CRICK
A
G
17
A
N2
G
17
1_555
A
C
36
A
O2
C
36
1_555
hydrog
WATSON-CRICK
A
G
17
A
O6
G
17
1_555
A
C
36
A
N4
C
36
1_555
hydrog
WATSON-CRICK
A
U
18
A
N3
U
18
1_555
A
A
35
A
N1
A
35
1_555
hydrog
WATSON-CRICK
A
U
18
A
O4
U
18
1_555
A
A
35
A
N6
A
35
1_555
hydrog
A-G MISPAIR
A
A
19
A
N6
A
19
1_555
A
G
34
A
N3
G
34
1_555
hydrog
WATSON-CRICK
A
C
20
A
N3
C
20
1_555
A
G
29
A
N1
G
29
1_555
hydrog
WATSON-CRICK
A
C
20
A
N4
C
20
1_555
A
G
29
A
O6
G
29
1_555
hydrog
WATSON-CRICK
A
C
20
A
O2
C
20
1_555
A
G
29
A
N2
G
29
1_555
hydrog
G-A MISPAIR
A
G
23
A
N2
G
23
1_555
A
A
27
A
N3
A
27
1_555
RNA
guanidine III riboswitch, stem-loop, pseudoknot, RNA, gene regulation
5NZ6
PDB
1
1
5NZ6
1
41
5NZ6
1
41
5NZ6
A
1
1
41
binding site for residue GAI A 101
A
GAI
101
Software
4
A
C
6
A
C
6
4
1_555
A
G
7
A
G
7
4
1_555
A
A
8
A
A
8
4
1_555
A
G
17
A
G
17
4
1_555
153
P 32 1 2