0.015400 0.000000 0.000000 0.000000 0.015400 0.000000 0.000000 0.000000 0.006313 0.00000 0.00000 0.00000 Franco-Echevarria, E. Perez-Canadillas, J.M. Gonzalez, B. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 64.936 64.936 158.391 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C4 H12 N O3 1 122.143 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRIS BUFFER non-polymer C9 H11 N O3 181.189 y TYROSINE L-peptide linking C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N N N 39 S C N 40 N C N 41 N O N 42 N C N 43 N O N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N N N 52 S C N 53 N C N 54 N O N 55 N C N 56 N C N 57 N C N 58 N N N 59 N C N 60 N N N 61 N N N 62 N O N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N N N 79 S C N 80 N C N 81 N O N 82 N C N 83 N C N 84 N O N 85 N N N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N N N 112 R C N 113 N C N 114 N O N 115 N C N 116 N S N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N C N 126 N O N 127 N C N 128 N O N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N O N 136 N P N 137 N O N 138 N O N 139 N O N 140 N C N 141 R C N 142 N O N 143 S C N 144 N O N 145 R C N 146 N O N 147 R C Y 148 N N Y 149 N C Y 150 N N Y 151 N C N 152 N C N 153 N O N 154 N N N 155 N C N 156 N N N 157 N N Y 158 N C N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N N N 174 S C N 175 N C N 176 N O N 177 N C N 178 N C N 179 N C N 180 N O N 181 N N N 182 N O N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N N N 194 S C N 195 N C N 196 N O N 197 N C N 198 N C N 199 N C N 200 N O N 201 N O N 202 N O N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N N N 213 N C N 214 N C N 215 N O N 216 N O N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N N N 223 S C N 224 N C N 225 N O N 226 N C Y 227 N C Y 228 N N Y 229 N C Y 230 N C Y 231 N N N 232 N O N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N O N 244 N H N 245 N H N 246 N N N 247 S C N 248 N C N 249 N O N 250 S C N 251 N C N 252 N C N 253 N C N 254 N O N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N N N 269 S C N 270 N C N 271 N O N 272 N C N 273 N C N 274 N C N 275 N C N 276 N O N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N N N 291 S C N 292 N C N 293 N O N 294 N C N 295 N C N 296 N C N 297 N C N 298 N N N 299 N O N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N N N 316 S C N 317 N C N 318 N O N 319 N C N 320 N C N 321 N S N 322 N C N 323 N O N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N N N 336 S C N 337 N C N 338 N O N 339 N C Y 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C Y 345 N C N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N N N 359 S C N 360 N C N 361 N O N 362 N C N 363 N C N 364 N C N 365 N O N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N N N 376 S C N 377 N C N 378 N O N 379 N C N 380 N O N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N N N 390 S C N 391 N C N 392 N O N 393 R C N 394 N O N 395 N C N 396 N O N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N N N 407 S C N 408 N C N 409 N O N 410 N C Y 411 N C Y 412 N C Y 413 N C Y 414 N N Y 415 N C Y 416 N C Y 417 N C Y 418 N C Y 419 N C N 420 N O N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N C N 434 N C N 435 N C N 436 N C N 437 N N N 438 N O N 439 N O N 440 N O N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N N N 454 S C N 455 N C N 456 N O N 457 N C Y 458 N C Y 459 N C Y 460 N C Y 461 N C Y 462 N C Y 463 N C N 464 N O N 465 N O N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N O N 478 N P N 479 N O N 480 N O N 481 N O N 482 N C N 483 R C N 484 N O N 485 S C N 486 N O N 487 R C N 488 N O N 489 R C N 490 N N N 491 N C N 492 N O N 493 N N N 494 N C N 495 N O N 496 N C N 497 N C N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N N N 512 S C N 513 N C N 514 N O N 515 N C N 516 N C N 517 N C N 518 N O N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N doub N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N doub N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing Y 155 N sing Y 156 N sing Y 157 N doub N 158 N sing Y 159 N sing N 160 N sing Y 161 N doub N 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N doub N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N doub N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N doub N 224 N sing N 225 N sing N 226 N sing N 227 N sing Y 228 N sing Y 229 N doub Y 230 N doub N 231 N sing Y 232 N sing N 233 N sing Y 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N doub N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N doub N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N doub N 332 N sing N 333 N sing N 334 N sing N 335 N sing Y 336 N doub Y 337 N sing Y 338 N sing N 339 N sing Y 340 N doub N 341 N sing Y 342 N doub N 343 N sing Y 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N doub N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N doub N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N doub N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N doub N 401 N sing N 402 N sing N 403 N sing N 404 N sing Y 405 N doub Y 406 N sing Y 407 N sing N 408 N sing Y 409 N doub Y 410 N sing Y 411 N sing N 412 N sing Y 413 N sing Y 414 N doub N 415 N sing Y 416 N doub N 417 N sing Y 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N doub N 448 N sing N 449 N sing N 450 N sing N 451 N sing Y 452 N doub Y 453 N sing Y 454 N sing N 455 N sing Y 456 N doub N 457 N sing Y 458 N doub N 459 N sing Y 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N doub N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N doub N 492 N sing N 493 N sing N 494 N sing N 495 N doub N 496 N sing N 497 N doub N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N doub N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing UK Nucleic Acids Res. NARHAD 0389 1362-4962 45 10293 10305 10.1093/nar/gkx685 28973465 The structure of transcription termination factor Nrd1 reveals an original mode for GUAA recognition. 2017 10.2210/pdb5o1y/pdb pdb_00005o1y 100 1 PIXEL 2016-06-23 DECTRIS PILATUS3 6M SINGLE WAVELENGTH M x-ray 1 0.979490 1.0 XALOC ALBA 0.979490 SYNCHROTRON ALBA BEAMLINE XALOC 20108.586 Protein NRD1 1 man polymer 1264.826 RNA (5'-R(*GP*UP*AP*A)-3') 1 syn polymer 62.068 1,2-ETHANEDIOL 2 syn non-polymer 122.143 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 1 syn non-polymer 18.015 water 38 nat water no no GSIGAPNTTFGTNNHHLYPDELNVSNNPHYRPKPVSYDSTLPPDHIKVYSRTLFIGGVPLNMKEWDLANVLKPFAEVQSV ILNNSRKHAFVKVYSRHEAENVLQNFNKDGALPLRTRWGVGFGPRDCCDYQHGYSIIPMHRLTDADKKWSVSAQWGGTSG QPLVTGIVFEEPDIIVGEGV GSIGAPNTTFGTNNHHLYPDELNVSNNPHYRPKPVSYDSTLPPDHIKVYSRTLFIGGVPLNMKEWDLANVLKPFAEVQSV ILNNSRKHAFVKVYSRHEAENVLQNFNKDGALPLRTRWGVGFGPRDCCDYQHGYSIIPMHRLTDADKKWSVSAQWGGTSG QPLVTGIVFEEPDIIVGEGV A polypeptide(L) no no GUAA GUAA B polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Baker's yeast sample 1 180 NRD1, YNL251C, N0868 4932 Saccharomyces cerevisiae 562 Escherichia coli Biological sequence 1 2.32 47.00 VAPOR DIFFUSION 1M Sodium Potassium Phosphate pH 7.4 291 struct citation chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Structure summary Database references Data collection Database references Refinement description 1 0 2017-08-02 1 1 2017-09-13 1 2 2017-10-11 1 3 2024-01-17 _struct.title _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _database_2.pdbx_DOI _database_2.pdbx_database_accession Spain CSIC N PDBE Y PDBE 2017-05-19 REL REL EDO 1,2-ETHANEDIOL TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HOH water 4930 Saccharomyces sample 1 4 5O1W PDB experimental model EDO 3 3 EDO EDO 501 A EDO 2 3 EDO EDO 101 B TRS 1 4 TRS TRS 102 B HOH 20 5 HOH HOH 601 A HOH 17 5 HOH HOH 602 A HOH 18 5 HOH HOH 603 A HOH 23 5 HOH HOH 604 A HOH 10 5 HOH HOH 605 A HOH 9 5 HOH HOH 606 A HOH 4 5 HOH HOH 607 A HOH 2 5 HOH HOH 608 A HOH 25 5 HOH HOH 609 A HOH 26 5 HOH HOH 610 A HOH 15 5 HOH HOH 611 A HOH 16 5 HOH HOH 612 A HOH 3 5 HOH HOH 613 A HOH 7 5 HOH HOH 614 A HOH 13 5 HOH HOH 615 A HOH 14 5 HOH HOH 616 A HOH 31 5 HOH HOH 617 A HOH 6 5 HOH HOH 618 A HOH 34 5 HOH HOH 619 A HOH 8 5 HOH HOH 620 A HOH 38 5 HOH HOH 621 A HOH 29 5 HOH HOH 622 A HOH 30 5 HOH HOH 623 A HOH 1 5 HOH HOH 624 A HOH 21 5 HOH HOH 625 A HOH 12 5 HOH HOH 626 A HOH 37 5 HOH HOH 627 A HOH 28 5 HOH HOH 628 A HOH 19 5 HOH HOH 629 A HOH 27 5 HOH HOH 630 A HOH 24 5 HOH HOH 631 A HOH 22 5 HOH HOH 632 A HOH 35 5 HOH HOH 633 A HOH 5 5 HOH HOH 634 A HOH 36 5 HOH HOH 635 A HOH 33 5 HOH HOH 636 A HOH 11 5 HOH HOH 201 B HOH 32 5 HOH HOH 202 B n 1 289 A n 2 290 A n 3 291 A n 4 292 A n 5 293 A n 6 294 A n 7 295 A n 8 296 A n 9 297 A n 10 298 A n 11 299 A n 12 300 A n 13 301 A ASN 302 n 14 ASN 302 A HIS 303 n 15 HIS 303 A HIS 304 n 16 HIS 304 A LEU 305 n 17 LEU 305 A TYR 306 n 18 TYR 306 A PRO 307 n 19 PRO 307 A ASP 308 n 20 ASP 308 A GLU 309 n 21 GLU 309 A LEU 310 n 22 LEU 310 A ASN 311 n 23 ASN 311 A VAL 312 n 24 VAL 312 A SER 313 n 25 SER 313 A ASN 314 n 26 ASN 314 A ASN 315 n 27 ASN 315 A PRO 316 n 28 PRO 316 A HIS 317 n 29 HIS 317 A TYR 318 n 30 TYR 318 A ARG 319 n 31 ARG 319 A PRO 320 n 32 PRO 320 A LYS 321 n 33 LYS 321 A PRO 322 n 34 PRO 322 A VAL 323 n 35 VAL 323 A SER 324 n 36 SER 324 A TYR 325 n 37 TYR 325 A ASP 326 n 38 ASP 326 A SER 327 n 39 SER 327 A THR 328 n 40 THR 328 A LEU 329 n 41 LEU 329 A PRO 330 n 42 PRO 330 A PRO 331 n 43 PRO 331 A ASP 332 n 44 ASP 332 A HIS 333 n 45 HIS 333 A ILE 334 n 46 ILE 334 A LYS 335 n 47 LYS 335 A VAL 336 n 48 VAL 336 A TYR 337 n 49 TYR 337 A SER 338 n 50 SER 338 A ARG 339 n 51 ARG 339 A THR 340 n 52 THR 340 A LEU 341 n 53 LEU 341 A PHE 342 n 54 PHE 342 A ILE 343 n 55 ILE 343 A GLY 344 n 56 GLY 344 A GLY 345 n 57 GLY 345 A VAL 346 n 58 VAL 346 A PRO 347 n 59 PRO 347 A LEU 348 n 60 LEU 348 A ASN 349 n 61 ASN 349 A MET 350 n 62 MET 350 A LYS 351 n 63 LYS 351 A GLU 352 n 64 GLU 352 A TRP 353 n 65 TRP 353 A ASP 354 n 66 ASP 354 A LEU 355 n 67 LEU 355 A ALA 356 n 68 ALA 356 A ASN 357 n 69 ASN 357 A VAL 358 n 70 VAL 358 A LEU 359 n 71 LEU 359 A LYS 360 n 72 LYS 360 A PRO 361 n 73 PRO 361 A PHE 362 n 74 PHE 362 A ALA 363 n 75 ALA 363 A GLU 364 n 76 GLU 364 A VAL 365 n 77 VAL 365 A GLN 366 n 78 GLN 366 A SER 367 n 79 SER 367 A VAL 368 n 80 VAL 368 A ILE 369 n 81 ILE 369 A LEU 370 n 82 LEU 370 A ASN 371 n 83 ASN 371 A ASN 372 n 84 ASN 372 A SER 373 n 85 SER 373 A ARG 374 n 86 ARG 374 A LYS 375 n 87 LYS 375 A HIS 376 n 88 HIS 376 A ALA 377 n 89 ALA 377 A PHE 378 n 90 PHE 378 A VAL 379 n 91 VAL 379 A LYS 380 n 92 LYS 380 A VAL 381 n 93 VAL 381 A TYR 382 n 94 TYR 382 A SER 383 n 95 SER 383 A ARG 384 n 96 ARG 384 A HIS 385 n 97 HIS 385 A GLU 386 n 98 GLU 386 A ALA 387 n 99 ALA 387 A GLU 388 n 100 GLU 388 A ASN 389 n 101 ASN 389 A VAL 390 n 102 VAL 390 A LEU 391 n 103 LEU 391 A GLN 392 n 104 GLN 392 A ASN 393 n 105 ASN 393 A PHE 394 n 106 PHE 394 A ASN 395 n 107 ASN 395 A LYS 396 n 108 LYS 396 A ASP 397 n 109 ASP 397 A GLY 398 n 110 GLY 398 A ALA 399 n 111 ALA 399 A LEU 400 n 112 LEU 400 A PRO 401 n 113 PRO 401 A LEU 402 n 114 LEU 402 A ARG 403 n 115 ARG 403 A THR 404 n 116 THR 404 A ARG 405 n 117 ARG 405 A TRP 406 n 118 TRP 406 A GLY 407 n 119 GLY 407 A VAL 408 n 120 VAL 408 A GLY 409 n 121 GLY 409 A PHE 410 n 122 PHE 410 A GLY 411 n 123 GLY 411 A PRO 412 n 124 PRO 412 A ARG 413 n 125 ARG 413 A ASP 414 n 126 ASP 414 A CYS 415 n 127 CYS 415 A CYS 416 n 128 CYS 416 A ASP 417 n 129 ASP 417 A TYR 418 n 130 TYR 418 A GLN 419 n 131 GLN 419 A HIS 420 n 132 HIS 420 A GLY 421 n 133 GLY 421 A TYR 422 n 134 TYR 422 A SER 423 n 135 SER 423 A ILE 424 n 136 ILE 424 A ILE 425 n 137 ILE 425 A PRO 426 n 138 PRO 426 A MET 427 n 139 MET 427 A HIS 428 n 140 HIS 428 A ARG 429 n 141 ARG 429 A LEU 430 n 142 LEU 430 A THR 431 n 143 THR 431 A ASP 432 n 144 ASP 432 A ALA 433 n 145 ALA 433 A ASP 434 n 146 ASP 434 A LYS 435 n 147 LYS 435 A LYS 436 n 148 LYS 436 A TRP 437 n 149 TRP 437 A SER 438 n 150 SER 438 A VAL 439 n 151 VAL 439 A SER 440 n 152 SER 440 A ALA 441 n 153 ALA 441 A GLN 442 n 154 GLN 442 A TRP 443 n 155 TRP 443 A GLY 444 n 156 GLY 444 A GLY 445 n 157 GLY 445 A THR 446 n 158 THR 446 A SER 447 n 159 SER 447 A GLY 448 n 160 GLY 448 A GLN 449 n 161 GLN 449 A PRO 450 n 162 PRO 450 A LEU 451 n 163 LEU 451 A VAL 452 n 164 VAL 452 A THR 453 n 165 THR 453 A GLY 454 n 166 GLY 454 A ILE 455 n 167 ILE 455 A VAL 456 n 168 VAL 456 A PHE 457 n 169 PHE 457 A GLU 458 n 170 GLU 458 A GLU 459 n 171 GLU 459 A PRO 460 n 172 PRO 460 A ASP 461 n 173 ASP 461 A ILE 462 n 174 ILE 462 A ILE 463 n 175 ILE 463 A VAL 464 n 176 VAL 464 A n 177 465 A n 178 466 A n 179 467 A n 180 468 A G 1 n 1 G 1 B U 2 n 2 U 2 B A 3 n 3 A 3 B A 4 n 4 A 4 B author_and_software_defined_assembly PISA 2 dimeric gel filtration 1790 2 8890 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N SER 324 A N SER 36 A O VAL 456 A O VAL 168 A O PHE 457 A O PHE 169 A N TYR 337 A N TYR 49 A N ILE 334 A N ILE 46 A O ILE 425 A O ILE 137 A O TYR 422 A O TYR 134 A N ASP 417 A N ASP 129 A N ILE 369 A N ILE 81 A O PHE 378 A O PHE 90 A O VAL 379 A O VAL 91 A N LEU 341 A N LEU 53 A N PHE 342 A N PHE 54 A O ARG 405 A O ARG 117 1 A GLY 289 A GLY 1 1 Y 1 A SER 290 A SER 2 1 Y 1 A ILE 291 A ILE 3 1 Y 1 A GLY 292 A GLY 4 1 Y 1 A ALA 293 A ALA 5 1 Y 1 A PRO 294 A PRO 6 1 Y 1 A ASN 295 A ASN 7 1 Y 1 A THR 296 A THR 8 1 Y 1 A THR 297 A THR 9 1 Y 1 A PHE 298 A PHE 10 1 Y 1 A GLY 299 A GLY 11 1 Y 1 A THR 300 A THR 12 1 Y 1 A ASN 301 A ASN 13 1 Y 1 A GLY 465 A GLY 177 1 Y 1 A GLU 466 A GLU 178 1 Y 1 A GLY 467 A GLY 179 1 Y 1 A VAL 468 A VAL 180 1 Y 1 A PRO 401 -79.62 22.74 1 A ILE 462 -113.31 -167.68 61.307 2.05 0.00 0.00 2.05 0.00 -4.11 0.954 0.955 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.21724 0.19668 0.19770 2.45 60.08 621 12040 4.9 96.16 6.754 0.145 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.239 0.190 0.80 0.80 1.20 5O1W 2.45 60.08 38 1448 16 84 1310 0.009 0.019 1458 0.002 0.020 1268 1.364 1.894 2000 0.974 3.000 2952 6.155 5.000 162 34.302 23.788 66 15.418 15.000 212 20.254 15.000 8 0.084 0.200 211 0.005 0.021 1552 0.001 0.020 298 3.410 5.824 652 3.409 5.806 650 5.549 8.700 812 5.546 8.711 813 3.916 6.637 806 3.914 6.637 806 6.522 9.788 1189 9.265 67.656 1601 9.268 67.713 1600 0.375 0.337 2.514 42 909 20 100.00 2.45 60.08 5O1Y 12717 1.0 0.04 0.10 1 28.2 16.7 96.1 0.63 2.45 2.55 3.4 0.97 0.154 1 17.7 refinement REFMAC 5.8.0158 data reduction XDS data scaling Aimless model building Coot phasing MOLREP N Structure of Nrd1 RNA binding domain in complex with RNA (GUAA) 1 N N 2 N N 3 N N 3 N N 4 N N 5 N N 5 N N A LYS 351 A LYS 63 HELX_P A LYS 360 A LYS 72 1 AA1 10 A SER 383 A SER 95 HELX_P A PHE 394 A PHE 106 1 AA2 12 A PRO 412 A PRO 124 HELX_P A ASP 414 A ASP 126 5 AA3 3 A HIS 428 A HIS 140 HELX_P A LEU 430 A LEU 142 5 AA4 3 A THR 431 A THR 143 HELX_P A ALA 441 A ALA 153 1 AA5 11 TRANSCRIPTION Nrd1, Nrd1 complex, RRM, RNA-binding, non-coding transcription, transcription NRD1_YEAST UNP 1 290 P53617 SIGAPNTTFGTNNHHLYPDELNVSNNPHYRPKPVSYDSTLPPDHIKVYSRTLFIGGVPLNMKEWDLANVLKPFAEVQSVI LNNSRKHAFVKVYSRHEAENVLQNFNKDGALPLRTRWGVGFGPRDCCDYQHGYSIIPMHRLTDADKKWSVSAQWGGTSGQ PLVTGIVFEEPDIIVGEGV 5O1Y PDB 2 1 5O1Y 290 468 5O1Y 290 468 P53617 A 1 2 180 1 4 5O1Y 1 4 5O1Y B 2 1 4 1 expression tag GLY 289 5O1Y A P53617 UNP 1 5 4 anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A SER 324 A SER 36 A TYR 325 A TYR 37 A ILE 455 A ILE 167 A GLU 458 A GLU 170 A HIS 333 A HIS 45 A TYR 337 A TYR 49 A TYR 422 A TYR 134 A PRO 426 A PRO 138 A CYS 416 A CYS 128 A ASP 417 A ASP 129 A VAL 365 A VAL 77 A ASN 371 A ASN 83 A HIS 376 A HIS 88 A VAL 381 A VAL 93 A THR 340 A THR 52 A GLY 344 A GLY 56 A ARG 403 A ARG 115 A TRP 406 A TRP 118 binding site for residue EDO A 501 A EDO 501 Software 4 binding site for residue EDO B 101 B EDO 101 Software 5 binding site for residue TRS B 102 B TRS 102 Software 3 A PRO 307 A PRO 19 4 1_555 A ASP 308 A ASP 20 4 1_555 A TYR 418 A TYR 130 4 6_455 B U 2 B U 2 4 6_455 A ASN 314 A ASN 26 5 6_555 A ARG 374 A ARG 86 5 1_555 B G 1 B G 1 5 1_555 B U 2 B U 2 5 1_555 B A 3 B A 3 5 1_555 A ASP 308 A ASP 20 3 6_555 A ARG 405 A ARG 117 3 1_555 B G 1 B G 1 3 1_555 96 P 43 21 2