0.020108 0.000000 0.000000 0.000000 0.016887 0.000000 0.000000 0.000000 0.011919 0.00000 0.00000 0.00000 Twarda-Clapa, A. Neochoritis, C.G. Grudnik, P. Dubin, G. Domling, A. Holak, T.A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 49.731 59.216 83.897 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C23 H21 Cl F3 N3 O4 495.879 3-[(1~{R})-2-(~{tert}-butylamino)-1-[methanoyl-[[3,4,5-tris(fluoranyl)phenyl]methyl]amino]-2-oxidanylidene-ethyl]-6-chloranyl-1~{H}-indole-2-carboxylic acid non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H Y 74 N N Y 75 N C N 76 N O Y 77 N C N 78 N C Y 79 N C Y 80 N C Y 81 N C Y 82 N C Y 83 N C Y 84 N C N 85 N C N 86 N C N 87 N C Y 88 N C N 89 N C N 90 N C N 91 N C Y 92 N C Y 93 N C Y 94 N C Y 95 N C Y 96 N C N 97 R C N 98 N C N 99 N F N 100 N F N 101 N F N 102 N N N 103 N N N 104 N O N 105 N O N 106 N O N 107 N CL N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N N N 130 R C N 131 N C N 132 N O N 133 N C N 134 N S N 135 N O N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N N N 144 S C N 145 N C N 146 N O N 147 N C N 148 N C N 149 N C N 150 N O N 151 N N N 152 N O N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N N N 164 S C N 165 N C N 166 N O N 167 N C N 168 N C N 169 N C N 170 N O N 171 N O N 172 N O N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N N N 183 N C N 184 N C N 185 N O N 186 N O N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N N N 193 S C N 194 N C N 195 N O N 196 N C Y 197 N C Y 198 N N Y 199 N C Y 200 N C Y 201 N N N 202 N O N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N O N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 S C N 221 N C N 222 N C N 223 N C N 224 N O N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N N N 239 S C N 240 N C N 241 N O N 242 N C N 243 N C N 244 N C N 245 N C N 246 N O N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C N 265 N C N 266 N C N 267 N C N 268 N N N 269 N O N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N N N 286 S C N 287 N C N 288 N O N 289 N C N 290 N C N 291 N S N 292 N C N 293 N O N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 N C Y 310 N C Y 311 N C Y 312 N C Y 313 N C Y 314 N C Y 315 N C N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N N N 329 S C N 330 N C N 331 N O N 332 N C N 333 N C N 334 N C N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N N N 346 S C N 347 N C N 348 N O N 349 N C N 350 N O N 351 N O N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N N N 360 S C N 361 N C N 362 N O N 363 R C N 364 N O N 365 N C N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N N N 377 S C N 378 N C N 379 N O N 380 N C Y 381 N C Y 382 N C Y 383 N C Y 384 N C Y 385 N C Y 386 N C N 387 N O N 388 N O N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N N N 401 S C N 402 N C N 403 N O N 404 N C N 405 N C N 406 N C N 407 N O N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N doub Y 72 N doub Y 73 N sing N 74 N sing Y 75 N sing Y 76 N sing Y 77 N sing Y 78 N doub N 79 N sing N 80 N sing Y 81 N doub N 82 N sing N 83 N sing N 84 N sing N 85 N sing Y 86 N sing Y 87 N doub Y 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N sing N 93 N sing N 94 N sing Y 95 N doub Y 96 N sing N 97 N sing N 98 N sing N 99 N doub Y 100 N sing Y 101 N doub N 102 N sing Y 103 N doub Y 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N doub N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N doub N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N doub N 193 N sing N 194 N sing N 195 N sing N 196 N sing Y 197 N sing Y 198 N doub Y 199 N doub N 200 N sing Y 201 N sing N 202 N sing Y 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N doub N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N doub N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing Y 305 N doub Y 306 N sing Y 307 N sing N 308 N sing Y 309 N doub N 310 N sing Y 311 N doub N 312 N sing Y 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N doub N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N doub N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N doub N 370 N sing N 371 N sing N 372 N sing N 373 N sing Y 374 N doub Y 375 N sing Y 376 N sing N 377 N sing Y 378 N doub N 379 N sing Y 380 N doub N 381 N sing Y 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N doub N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing UK Febs J. 1742-464X 286 1360 1374 10.1111/febs.14774 30715803 A fluorinated indole-based MDM2 antagonist selectively inhibits the growth of p53wtosteosarcoma cells. 2019 10.2210/pdb5oai/pdb pdb_00005oai 277.0 1 PIXEL 2017-01-20 DECTRIS PILATUS3 6M Double crystal SINGLE WAVELENGTH M x-ray 1 0.9184 1.0 14.1 BESSY 0.9184 SYNCHROTRON BESSY BEAMLINE 14.1 Met 17 is a translation initiating Met. 11399.375 E3 ubiquitin-protein ligase Mdm2 2.3.2.27 1 man polymer 495.879 3-[(1~{R})-2-(~{tert}-butylamino)-1-[methanoyl-[[3,4,5-tris(fluoranyl)phenyl]methyl]amino]-2-oxidanylidene-ethyl]-6-chloranyl-1~{H}-indole-2-carboxylic acid 1 syn non-polymer 18.015 water 41 nat water Double minute 2 protein,Hdm2,Oncoprotein Mdm2,RING-type E3 ubiquitin transferase Mdm2,p53-binding protein Mdm2 no no MQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEH RKIYTMIYRNLVVVNQQ MQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEH RKIYTMIYRNLVVVNQQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 97 MDM2 9606 Homo sapiens 562 Escherichia coli Biological sequence 1 2.71 54.60 VAPOR DIFFUSION, SITTING DROP 6.5 0.1 M Bis-Tris pH 6.5, 20% (w/v) PEG 5000 MME 277.15 citation pdbx_database_proc chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Data collection Database references Data collection Database references Refinement description 1 0 2019-02-13 1 1 2019-04-17 1 2 2024-01-17 _citation.journal_abbrev _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _database_2.pdbx_DOI _database_2.pdbx_database_accession N PDBE Y PDBE 2017-06-22 REL REL B5K 3-[(1~{R})-2-(~{tert}-butylamino)-1-[methanoyl-[[3,4,5-tris(fluoranyl)phenyl]methyl]amino]-2-oxidanylidene-ethyl]-6-chloranyl-1~{H}-indole-2-carboxylic acid HOH water 3TJ2 PDB experimental model DN5 1 2 B5K B5K 201 A HOH 25 3 HOH HOH 301 A HOH 29 3 HOH HOH 302 A HOH 27 3 HOH HOH 303 A HOH 19 3 HOH HOH 304 A HOH 31 3 HOH HOH 305 A HOH 10 3 HOH HOH 306 A HOH 33 3 HOH HOH 307 A HOH 9 3 HOH HOH 308 A HOH 11 3 HOH HOH 309 A HOH 3 3 HOH HOH 310 A HOH 18 3 HOH HOH 311 A HOH 15 3 HOH HOH 312 A HOH 28 3 HOH HOH 313 A HOH 39 3 HOH HOH 314 A HOH 35 3 HOH HOH 315 A HOH 5 3 HOH HOH 316 A HOH 8 3 HOH HOH 317 A HOH 37 3 HOH HOH 318 A HOH 14 3 HOH HOH 319 A HOH 13 3 HOH HOH 320 A HOH 32 3 HOH HOH 321 A HOH 23 3 HOH HOH 322 A HOH 36 3 HOH HOH 323 A HOH 24 3 HOH HOH 324 A HOH 2 3 HOH HOH 325 A HOH 4 3 HOH HOH 326 A HOH 22 3 HOH HOH 327 A HOH 1 3 HOH HOH 328 A HOH 21 3 HOH HOH 329 A HOH 20 3 HOH HOH 330 A HOH 12 3 HOH HOH 331 A HOH 34 3 HOH HOH 332 A HOH 41 3 HOH HOH 333 A HOH 6 3 HOH HOH 334 A HOH 40 3 HOH HOH 335 A HOH 26 3 HOH HOH 336 A HOH 7 3 HOH HOH 337 A HOH 30 3 HOH HOH 338 A HOH 38 3 HOH HOH 339 A HOH 17 3 HOH HOH 340 A HOH 16 3 HOH HOH 341 A MET 17 n 1 MET 17 A GLN 18 n 2 GLN 18 A ILE 19 n 3 ILE 19 A PRO 20 n 4 PRO 20 A ALA 21 n 5 ALA 21 A SER 22 n 6 SER 22 A GLU 23 n 7 GLU 23 A GLN 24 n 8 GLN 24 A GLU 25 n 9 GLU 25 A THR 26 n 10 THR 26 A LEU 27 n 11 LEU 27 A VAL 28 n 12 VAL 28 A ARG 29 n 13 ARG 29 A PRO 30 n 14 PRO 30 A LYS 31 n 15 LYS 31 A PRO 32 n 16 PRO 32 A LEU 33 n 17 LEU 33 A LEU 34 n 18 LEU 34 A LEU 35 n 19 LEU 35 A LYS 36 n 20 LYS 36 A LEU 37 n 21 LEU 37 A LEU 38 n 22 LEU 38 A LYS 39 n 23 LYS 39 A SER 40 n 24 SER 40 A VAL 41 n 25 VAL 41 A GLY 42 n 26 GLY 42 A ALA 43 n 27 ALA 43 A GLN 44 n 28 GLN 44 A LYS 45 n 29 LYS 45 A ASP 46 n 30 ASP 46 A THR 47 n 31 THR 47 A TYR 48 n 32 TYR 48 A THR 49 n 33 THR 49 A MET 50 n 34 MET 50 A LYS 51 n 35 LYS 51 A GLU 52 n 36 GLU 52 A VAL 53 n 37 VAL 53 A LEU 54 n 38 LEU 54 A PHE 55 n 39 PHE 55 A TYR 56 n 40 TYR 56 A LEU 57 n 41 LEU 57 A GLY 58 n 42 GLY 58 A GLN 59 n 43 GLN 59 A TYR 60 n 44 TYR 60 A ILE 61 n 45 ILE 61 A MET 62 n 46 MET 62 A THR 63 n 47 THR 63 A LYS 64 n 48 LYS 64 A ARG 65 n 49 ARG 65 A LEU 66 n 50 LEU 66 A TYR 67 n 51 TYR 67 A ASP 68 n 52 ASP 68 A GLU 69 n 53 GLU 69 A LYS 70 n 54 LYS 70 A GLN 71 n 55 GLN 71 A GLN 72 n 56 GLN 72 A HIS 73 n 57 HIS 73 A ILE 74 n 58 ILE 74 A VAL 75 n 59 VAL 75 A TYR 76 n 60 TYR 76 A CYS 77 n 61 CYS 77 A SER 78 n 62 SER 78 A ASN 79 n 63 ASN 79 A ASP 80 n 64 ASP 80 A LEU 81 n 65 LEU 81 A LEU 82 n 66 LEU 82 A GLY 83 n 67 GLY 83 A ASP 84 n 68 ASP 84 A LEU 85 n 69 LEU 85 A PHE 86 n 70 PHE 86 A GLY 87 n 71 GLY 87 A VAL 88 n 72 VAL 88 A PRO 89 n 73 PRO 89 A SER 90 n 74 SER 90 A PHE 91 n 75 PHE 91 A SER 92 n 76 SER 92 A VAL 93 n 77 VAL 93 A LYS 94 n 78 LYS 94 A GLU 95 n 79 GLU 95 A HIS 96 n 80 HIS 96 A ARG 97 n 81 ARG 97 A LYS 98 n 82 LYS 98 A ILE 99 n 83 ILE 99 A TYR 100 n 84 TYR 100 A THR 101 n 85 THR 101 A MET 102 n 86 MET 102 A ILE 103 n 87 ILE 103 A TYR 104 n 88 TYR 104 A ARG 105 n 89 ARG 105 A ASN 106 n 90 ASN 106 A LEU 107 n 91 LEU 107 A VAL 108 n 92 VAL 108 A VAL 109 n 93 VAL 109 A VAL 110 n 94 VAL 110 A ASN 111 n 95 ASN 111 A GLN 112 n 96 GLN 112 A GLN 113 n 97 GLN 113 A 3.3310 -2.5641 1.4673 2.6479 -0.1732 2.0446 -0.1684 -0.1203 -0.0209 -0.0131 -0.0104 0.8534 0.1687 -0.4266 -0.4398 0.3928 -0.0388 -0.0425 0.3195 -0.0159 0.5945 refined 50.2633 12.0282 16.9740 X-RAY DIFFRACTION 2.2337 -0.7172 0.9525 1.7870 -0.1615 1.1866 0.7133 1.2958 -0.1828 -1.6187 -0.3409 0.0718 0.9768 0.4083 -0.2117 0.8044 0.1027 -0.0846 0.5427 0.0055 0.4727 refined 56.7072 7.8836 4.2127 X-RAY DIFFRACTION 3.3519 0.2992 0.6004 3.2763 0.1285 3.1999 0.3190 0.3844 -0.6160 -0.4079 -0.2785 0.7419 0.1403 -0.2216 0.0442 0.3208 -0.0452 -0.0498 0.3211 -0.0290 0.4673 refined 56.0579 1.7548 11.6755 X-RAY DIFFRACTION 1.4058 -0.2295 0.4464 3.1345 -1.4884 3.6034 0.1078 0.1359 -0.1885 -0.2066 -0.2151 -0.1140 0.3244 0.0213 -0.0076 0.3062 0.0360 -0.0007 0.3281 -0.0241 0.3595 refined 67.9217 -4.5249 17.7641 X-RAY DIFFRACTION 4.0203 0.4645 0.3249 4.7031 0.8905 1.7422 -0.0719 0.0168 0.0170 0.1794 -0.1166 -0.0210 -0.5187 0.3060 -0.0184 0.3046 0.0304 -0.0395 0.2530 -0.0123 0.3465 refined 66.6214 5.2181 18.2647 X-RAY DIFFRACTION 2.1590 0.6768 -1.2808 4.1109 -1.0433 6.1512 0.0911 0.0791 0.1786 -0.0083 -0.1495 0.5372 -0.3121 0.1451 0.0466 0.2763 0.0049 -0.0263 0.2246 -0.0281 0.3786 refined 56.6277 14.5077 16.9595 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 chain 'A' and (resid 17 through 31 ) X-RAY DIFFRACTION 2 chain 'A' and (resid 32 through 49 ) X-RAY DIFFRACTION 3 chain 'A' and (resid 50 through 63 ) X-RAY DIFFRACTION 4 chain 'A' and (resid 64 through 80 ) X-RAY DIFFRACTION 5 chain 'A' and (resid 81 through 95 ) X-RAY DIFFRACTION 6 chain 'A' and (resid 96 through 113 ) author_and_software_defined_assembly PISA 1 monomeric none 0 0 6040 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O TYR 48 A O TYR 32 A N VAL 28 A N VAL 12 A N ARG 29 A N ARG 13 A O VAL 108 A O VAL 92 A N VAL 75 A N VAL 59 A O PHE 91 A O PHE 75 1 A CG MET 17 A CG MET 1 1 Y 1 A SD MET 17 A SD MET 1 1 Y 1 A CE MET 17 A CE MET 1 1 Y 1 A CG GLN 113 A CG GLN 97 1 Y 1 A CD GLN 113 A CD GLN 97 1 Y 1 A OE1 GLN 113 A OE1 GLN 97 1 Y 1 A NE2 GLN 113 A NE2 GLN 97 1 Y 1 A GLN 18 -163.07 109.95 0.2273 0.2156 0.2161 2.000 42.780 406 8621 4.71 99.23 0.13 1 FREE R-VALUE 1.34 MOLECULAR REPLACEMENT 30.56 0.90 1.11 3TJ2 ML FLAT BULK SOLVENT MODEL 2.000 42.780 41 867 34 0 792 0.003 850 1.051 1154 7.839 712 0.087 128 0.003 142 0.2816 0.2651 2.2895 143 2652 98.00 0.2652 0.2491 2.8844 139 2710 99.00 0.1965 0.1948 42.7897 124 2853 100.00 2.00 42.78 5OAI 8652 0.058 0.037 0.069 1 16.0 6.4 99.24 0.477 2.0 2.072 839 0.299 0.564 1 98.35 refinement PHENIX (1.11.1_2575: ???) data scaling SCALA 3.3.21 data reduction XDS phasing PHASER 2.5.5 N Structure of MDM2 with low molecular weight inhibitor 1 N N 2 N N 3 N N A PRO 20 A PRO 4 HELX_P A GLU 25 A GLU 9 1 AA1 6 A LYS 31 A LYS 15 HELX_P A SER 40 A SER 24 1 AA2 10 A MET 50 A MET 34 HELX_P A LYS 64 A LYS 48 1 AA3 15 A ASP 80 A ASP 64 HELX_P A GLY 87 A GLY 71 1 AA4 8 A GLU 95 A GLU 79 HELX_P A ARG 105 A ARG 89 1 AA5 11 LIGASE p53, MDM2, MDMX, protein-protein interaction, cancer, inhibitor, ligase MDM2_HUMAN UNP 1 18 Q00987 QIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHR KIYTMIYRNLVVVNQQ 18 113 5OAI 18 113 Q00987 A 1 2 97 1 initiating methionine MET 17 5OAI A Q00987 UNP 1 3 2 anti-parallel anti-parallel anti-parallel A TYR 48 A TYR 32 A THR 49 A THR 33 A LEU 27 A LEU 11 A PRO 30 A PRO 14 A LEU 107 A LEU 91 A VAL 109 A VAL 93 A ILE 74 A ILE 58 A TYR 76 A TYR 60 A SER 90 A SER 74 A SER 92 A SER 76 binding site for residue B5K A 201 A B5K 201 Software 15 A LYS 51 A LYS 35 15 2_755 A LEU 54 A LEU 38 15 1_555 A GLY 58 A GLY 42 15 1_555 A ILE 61 A ILE 45 15 1_555 A MET 62 A MET 46 15 1_555 A VAL 93 A VAL 77 15 1_555 A HIS 96 A HIS 80 15 1_555 A ILE 99 A ILE 83 15 1_555 A TYR 100 A TYR 84 15 1_555 A HOH 304 C HOH 15 1_555 A HOH 308 C HOH 15 1_555 A HOH 312 C HOH 15 1_555 A HOH 315 C HOH 15 1_555 A HOH 330 C HOH 15 1_555 A HOH 333 C HOH 15 1_555 23 I 2 2 2