0.020108
0.000000
0.000000
0.000000
0.016887
0.000000
0.000000
0.000000
0.011919
0.00000
0.00000
0.00000
Twarda-Clapa, A.
Neochoritis, C.G.
Grudnik, P.
Dubin, G.
Domling, A.
Holak, T.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
49.731
59.216
83.897
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C23 H21 Cl F3 N3 O4
495.879
3-[(1~{R})-2-(~{tert}-butylamino)-1-[methanoyl-[[3,4,5-tris(fluoranyl)phenyl]methyl]amino]-2-oxidanylidene-ethyl]-6-chloranyl-1~{H}-indole-2-carboxylic acid
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
Y
74
N
N
Y
75
N
C
N
76
N
O
Y
77
N
C
N
78
N
C
Y
79
N
C
Y
80
N
C
Y
81
N
C
Y
82
N
C
Y
83
N
C
Y
84
N
C
N
85
N
C
N
86
N
C
N
87
N
C
Y
88
N
C
N
89
N
C
N
90
N
C
N
91
N
C
Y
92
N
C
Y
93
N
C
Y
94
N
C
Y
95
N
C
Y
96
N
C
N
97
R
C
N
98
N
C
N
99
N
F
N
100
N
F
N
101
N
F
N
102
N
N
N
103
N
N
N
104
N
O
N
105
N
O
N
106
N
O
N
107
N
CL
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
N
N
130
R
C
N
131
N
C
N
132
N
O
N
133
N
C
N
134
N
S
N
135
N
O
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
N
N
144
S
C
N
145
N
C
N
146
N
O
N
147
N
C
N
148
N
C
N
149
N
C
N
150
N
O
N
151
N
N
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
N
N
164
S
C
N
165
N
C
N
166
N
O
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
O
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
N
N
183
N
C
N
184
N
C
N
185
N
O
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
N
N
193
S
C
N
194
N
C
N
195
N
O
N
196
N
C
Y
197
N
C
Y
198
N
N
Y
199
N
C
Y
200
N
C
Y
201
N
N
N
202
N
O
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
O
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
S
C
N
221
N
C
N
222
N
C
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
N
N
239
S
C
N
240
N
C
N
241
N
O
N
242
N
C
N
243
N
C
N
244
N
C
N
245
N
C
N
246
N
O
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
C
N
268
N
N
N
269
N
O
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
N
N
286
S
C
N
287
N
C
N
288
N
O
N
289
N
C
N
290
N
C
N
291
N
S
N
292
N
C
N
293
N
O
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
N
316
N
O
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
N
333
N
C
N
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
N
C
N
350
N
O
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
R
C
N
364
N
O
N
365
N
C
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
S
C
N
378
N
C
N
379
N
O
N
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
Y
385
N
C
Y
386
N
C
N
387
N
O
N
388
N
O
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
N
N
401
S
C
N
402
N
C
N
403
N
O
N
404
N
C
N
405
N
C
N
406
N
C
N
407
N
O
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
doub
Y
72
N
doub
Y
73
N
sing
N
74
N
sing
Y
75
N
sing
Y
76
N
sing
Y
77
N
sing
Y
78
N
doub
N
79
N
sing
N
80
N
sing
Y
81
N
doub
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
Y
86
N
sing
Y
87
N
doub
Y
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
doub
N
92
N
sing
N
93
N
sing
N
94
N
sing
Y
95
N
doub
Y
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
doub
Y
100
N
sing
Y
101
N
doub
N
102
N
sing
Y
103
N
doub
Y
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
doub
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
doub
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
doub
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
Y
197
N
sing
Y
198
N
doub
Y
199
N
doub
N
200
N
sing
Y
201
N
sing
N
202
N
sing
Y
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
doub
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
doub
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
Y
305
N
doub
Y
306
N
sing
Y
307
N
sing
N
308
N
sing
Y
309
N
doub
N
310
N
sing
Y
311
N
doub
N
312
N
sing
Y
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
doub
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
doub
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
Y
374
N
doub
Y
375
N
sing
Y
376
N
sing
N
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
UK
Febs J.
1742-464X
286
1360
1374
10.1111/febs.14774
30715803
A fluorinated indole-based MDM2 antagonist selectively inhibits the growth of p53wtosteosarcoma cells.
2019
10.2210/pdb5oai/pdb
pdb_00005oai
277.0
1
PIXEL
2017-01-20
DECTRIS PILATUS3 6M
Double crystal
SINGLE WAVELENGTH
M
x-ray
1
0.9184
1.0
14.1
BESSY
0.9184
SYNCHROTRON
BESSY BEAMLINE 14.1
Met 17 is a translation initiating Met.
11399.375
E3 ubiquitin-protein ligase Mdm2
2.3.2.27
1
man
polymer
495.879
3-[(1~{R})-2-(~{tert}-butylamino)-1-[methanoyl-[[3,4,5-tris(fluoranyl)phenyl]methyl]amino]-2-oxidanylidene-ethyl]-6-chloranyl-1~{H}-indole-2-carboxylic acid
1
syn
non-polymer
18.015
water
41
nat
water
Double minute 2 protein,Hdm2,Oncoprotein Mdm2,RING-type E3 ubiquitin transferase Mdm2,p53-binding protein Mdm2
no
no
MQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEH
RKIYTMIYRNLVVVNQQ
MQIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEH
RKIYTMIYRNLVVVNQQ
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
97
MDM2
9606
Homo sapiens
562
Escherichia coli
Biological sequence
1
2.71
54.60
VAPOR DIFFUSION, SITTING DROP
6.5
0.1 M Bis-Tris pH 6.5, 20% (w/v) PEG 5000 MME
277.15
citation
pdbx_database_proc
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Data collection
Database references
Data collection
Database references
Refinement description
1
0
2019-02-13
1
1
2019-04-17
1
2
2024-01-17
_citation.journal_abbrev
_citation.journal_id_ISSN
_citation.journal_volume
_citation.page_first
_citation.page_last
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
N
PDBE
Y
PDBE
2017-06-22
REL
REL
B5K
3-[(1~{R})-2-(~{tert}-butylamino)-1-[methanoyl-[[3,4,5-tris(fluoranyl)phenyl]methyl]amino]-2-oxidanylidene-ethyl]-6-chloranyl-1~{H}-indole-2-carboxylic acid
HOH
water
3TJ2
PDB
experimental model
DN5
1
2
B5K
B5K
201
A
HOH
25
3
HOH
HOH
301
A
HOH
29
3
HOH
HOH
302
A
HOH
27
3
HOH
HOH
303
A
HOH
19
3
HOH
HOH
304
A
HOH
31
3
HOH
HOH
305
A
HOH
10
3
HOH
HOH
306
A
HOH
33
3
HOH
HOH
307
A
HOH
9
3
HOH
HOH
308
A
HOH
11
3
HOH
HOH
309
A
HOH
3
3
HOH
HOH
310
A
HOH
18
3
HOH
HOH
311
A
HOH
15
3
HOH
HOH
312
A
HOH
28
3
HOH
HOH
313
A
HOH
39
3
HOH
HOH
314
A
HOH
35
3
HOH
HOH
315
A
HOH
5
3
HOH
HOH
316
A
HOH
8
3
HOH
HOH
317
A
HOH
37
3
HOH
HOH
318
A
HOH
14
3
HOH
HOH
319
A
HOH
13
3
HOH
HOH
320
A
HOH
32
3
HOH
HOH
321
A
HOH
23
3
HOH
HOH
322
A
HOH
36
3
HOH
HOH
323
A
HOH
24
3
HOH
HOH
324
A
HOH
2
3
HOH
HOH
325
A
HOH
4
3
HOH
HOH
326
A
HOH
22
3
HOH
HOH
327
A
HOH
1
3
HOH
HOH
328
A
HOH
21
3
HOH
HOH
329
A
HOH
20
3
HOH
HOH
330
A
HOH
12
3
HOH
HOH
331
A
HOH
34
3
HOH
HOH
332
A
HOH
41
3
HOH
HOH
333
A
HOH
6
3
HOH
HOH
334
A
HOH
40
3
HOH
HOH
335
A
HOH
26
3
HOH
HOH
336
A
HOH
7
3
HOH
HOH
337
A
HOH
30
3
HOH
HOH
338
A
HOH
38
3
HOH
HOH
339
A
HOH
17
3
HOH
HOH
340
A
HOH
16
3
HOH
HOH
341
A
MET
17
n
1
MET
17
A
GLN
18
n
2
GLN
18
A
ILE
19
n
3
ILE
19
A
PRO
20
n
4
PRO
20
A
ALA
21
n
5
ALA
21
A
SER
22
n
6
SER
22
A
GLU
23
n
7
GLU
23
A
GLN
24
n
8
GLN
24
A
GLU
25
n
9
GLU
25
A
THR
26
n
10
THR
26
A
LEU
27
n
11
LEU
27
A
VAL
28
n
12
VAL
28
A
ARG
29
n
13
ARG
29
A
PRO
30
n
14
PRO
30
A
LYS
31
n
15
LYS
31
A
PRO
32
n
16
PRO
32
A
LEU
33
n
17
LEU
33
A
LEU
34
n
18
LEU
34
A
LEU
35
n
19
LEU
35
A
LYS
36
n
20
LYS
36
A
LEU
37
n
21
LEU
37
A
LEU
38
n
22
LEU
38
A
LYS
39
n
23
LYS
39
A
SER
40
n
24
SER
40
A
VAL
41
n
25
VAL
41
A
GLY
42
n
26
GLY
42
A
ALA
43
n
27
ALA
43
A
GLN
44
n
28
GLN
44
A
LYS
45
n
29
LYS
45
A
ASP
46
n
30
ASP
46
A
THR
47
n
31
THR
47
A
TYR
48
n
32
TYR
48
A
THR
49
n
33
THR
49
A
MET
50
n
34
MET
50
A
LYS
51
n
35
LYS
51
A
GLU
52
n
36
GLU
52
A
VAL
53
n
37
VAL
53
A
LEU
54
n
38
LEU
54
A
PHE
55
n
39
PHE
55
A
TYR
56
n
40
TYR
56
A
LEU
57
n
41
LEU
57
A
GLY
58
n
42
GLY
58
A
GLN
59
n
43
GLN
59
A
TYR
60
n
44
TYR
60
A
ILE
61
n
45
ILE
61
A
MET
62
n
46
MET
62
A
THR
63
n
47
THR
63
A
LYS
64
n
48
LYS
64
A
ARG
65
n
49
ARG
65
A
LEU
66
n
50
LEU
66
A
TYR
67
n
51
TYR
67
A
ASP
68
n
52
ASP
68
A
GLU
69
n
53
GLU
69
A
LYS
70
n
54
LYS
70
A
GLN
71
n
55
GLN
71
A
GLN
72
n
56
GLN
72
A
HIS
73
n
57
HIS
73
A
ILE
74
n
58
ILE
74
A
VAL
75
n
59
VAL
75
A
TYR
76
n
60
TYR
76
A
CYS
77
n
61
CYS
77
A
SER
78
n
62
SER
78
A
ASN
79
n
63
ASN
79
A
ASP
80
n
64
ASP
80
A
LEU
81
n
65
LEU
81
A
LEU
82
n
66
LEU
82
A
GLY
83
n
67
GLY
83
A
ASP
84
n
68
ASP
84
A
LEU
85
n
69
LEU
85
A
PHE
86
n
70
PHE
86
A
GLY
87
n
71
GLY
87
A
VAL
88
n
72
VAL
88
A
PRO
89
n
73
PRO
89
A
SER
90
n
74
SER
90
A
PHE
91
n
75
PHE
91
A
SER
92
n
76
SER
92
A
VAL
93
n
77
VAL
93
A
LYS
94
n
78
LYS
94
A
GLU
95
n
79
GLU
95
A
HIS
96
n
80
HIS
96
A
ARG
97
n
81
ARG
97
A
LYS
98
n
82
LYS
98
A
ILE
99
n
83
ILE
99
A
TYR
100
n
84
TYR
100
A
THR
101
n
85
THR
101
A
MET
102
n
86
MET
102
A
ILE
103
n
87
ILE
103
A
TYR
104
n
88
TYR
104
A
ARG
105
n
89
ARG
105
A
ASN
106
n
90
ASN
106
A
LEU
107
n
91
LEU
107
A
VAL
108
n
92
VAL
108
A
VAL
109
n
93
VAL
109
A
VAL
110
n
94
VAL
110
A
ASN
111
n
95
ASN
111
A
GLN
112
n
96
GLN
112
A
GLN
113
n
97
GLN
113
A
3.3310
-2.5641
1.4673
2.6479
-0.1732
2.0446
-0.1684
-0.1203
-0.0209
-0.0131
-0.0104
0.8534
0.1687
-0.4266
-0.4398
0.3928
-0.0388
-0.0425
0.3195
-0.0159
0.5945
refined
50.2633
12.0282
16.9740
X-RAY DIFFRACTION
2.2337
-0.7172
0.9525
1.7870
-0.1615
1.1866
0.7133
1.2958
-0.1828
-1.6187
-0.3409
0.0718
0.9768
0.4083
-0.2117
0.8044
0.1027
-0.0846
0.5427
0.0055
0.4727
refined
56.7072
7.8836
4.2127
X-RAY DIFFRACTION
3.3519
0.2992
0.6004
3.2763
0.1285
3.1999
0.3190
0.3844
-0.6160
-0.4079
-0.2785
0.7419
0.1403
-0.2216
0.0442
0.3208
-0.0452
-0.0498
0.3211
-0.0290
0.4673
refined
56.0579
1.7548
11.6755
X-RAY DIFFRACTION
1.4058
-0.2295
0.4464
3.1345
-1.4884
3.6034
0.1078
0.1359
-0.1885
-0.2066
-0.2151
-0.1140
0.3244
0.0213
-0.0076
0.3062
0.0360
-0.0007
0.3281
-0.0241
0.3595
refined
67.9217
-4.5249
17.7641
X-RAY DIFFRACTION
4.0203
0.4645
0.3249
4.7031
0.8905
1.7422
-0.0719
0.0168
0.0170
0.1794
-0.1166
-0.0210
-0.5187
0.3060
-0.0184
0.3046
0.0304
-0.0395
0.2530
-0.0123
0.3465
refined
66.6214
5.2181
18.2647
X-RAY DIFFRACTION
2.1590
0.6768
-1.2808
4.1109
-1.0433
6.1512
0.0911
0.0791
0.1786
-0.0083
-0.1495
0.5372
-0.3121
0.1451
0.0466
0.2763
0.0049
-0.0263
0.2246
-0.0281
0.3786
refined
56.6277
14.5077
16.9595
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain 'A' and (resid 17 through 31 )
X-RAY DIFFRACTION
2
chain 'A' and (resid 32 through 49 )
X-RAY DIFFRACTION
3
chain 'A' and (resid 50 through 63 )
X-RAY DIFFRACTION
4
chain 'A' and (resid 64 through 80 )
X-RAY DIFFRACTION
5
chain 'A' and (resid 81 through 95 )
X-RAY DIFFRACTION
6
chain 'A' and (resid 96 through 113 )
author_and_software_defined_assembly
PISA
1
monomeric
none
0
0
6040
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TYR
48
A
O
TYR
32
A
N
VAL
28
A
N
VAL
12
A
N
ARG
29
A
N
ARG
13
A
O
VAL
108
A
O
VAL
92
A
N
VAL
75
A
N
VAL
59
A
O
PHE
91
A
O
PHE
75
1
A
CG
MET
17
A
CG
MET
1
1
Y
1
A
SD
MET
17
A
SD
MET
1
1
Y
1
A
CE
MET
17
A
CE
MET
1
1
Y
1
A
CG
GLN
113
A
CG
GLN
97
1
Y
1
A
CD
GLN
113
A
CD
GLN
97
1
Y
1
A
OE1
GLN
113
A
OE1
GLN
97
1
Y
1
A
NE2
GLN
113
A
NE2
GLN
97
1
Y
1
A
GLN
18
-163.07
109.95
0.2273
0.2156
0.2161
2.000
42.780
406
8621
4.71
99.23
0.13
1
FREE R-VALUE
1.34
MOLECULAR REPLACEMENT
30.56
0.90
1.11
3TJ2
ML
FLAT BULK SOLVENT MODEL
2.000
42.780
41
867
34
0
792
0.003
850
1.051
1154
7.839
712
0.087
128
0.003
142
0.2816
0.2651
2.2895
143
2652
98.00
0.2652
0.2491
2.8844
139
2710
99.00
0.1965
0.1948
42.7897
124
2853
100.00
2.00
42.78
5OAI
8652
0.058
0.037
0.069
1
16.0
6.4
99.24
0.477
2.0
2.072
839
0.299
0.564
1
98.35
refinement
PHENIX
(1.11.1_2575: ???)
data scaling
SCALA
3.3.21
data reduction
XDS
phasing
PHASER
2.5.5
N
Structure of MDM2 with low molecular weight inhibitor
1
N
N
2
N
N
3
N
N
A
PRO
20
A
PRO
4
HELX_P
A
GLU
25
A
GLU
9
1
AA1
6
A
LYS
31
A
LYS
15
HELX_P
A
SER
40
A
SER
24
1
AA2
10
A
MET
50
A
MET
34
HELX_P
A
LYS
64
A
LYS
48
1
AA3
15
A
ASP
80
A
ASP
64
HELX_P
A
GLY
87
A
GLY
71
1
AA4
8
A
GLU
95
A
GLU
79
HELX_P
A
ARG
105
A
ARG
89
1
AA5
11
LIGASE
p53, MDM2, MDMX, protein-protein interaction, cancer, inhibitor, ligase
MDM2_HUMAN
UNP
1
18
Q00987
QIPASEQETLVRPKPLLLKLLKSVGAQKDTYTMKEVLFYLGQYIMTKRLYDEKQQHIVYCSNDLLGDLFGVPSFSVKEHR
KIYTMIYRNLVVVNQQ
18
113
5OAI
18
113
Q00987
A
1
2
97
1
initiating methionine
MET
17
5OAI
A
Q00987
UNP
1
3
2
anti-parallel
anti-parallel
anti-parallel
A
TYR
48
A
TYR
32
A
THR
49
A
THR
33
A
LEU
27
A
LEU
11
A
PRO
30
A
PRO
14
A
LEU
107
A
LEU
91
A
VAL
109
A
VAL
93
A
ILE
74
A
ILE
58
A
TYR
76
A
TYR
60
A
SER
90
A
SER
74
A
SER
92
A
SER
76
binding site for residue B5K A 201
A
B5K
201
Software
15
A
LYS
51
A
LYS
35
15
2_755
A
LEU
54
A
LEU
38
15
1_555
A
GLY
58
A
GLY
42
15
1_555
A
ILE
61
A
ILE
45
15
1_555
A
MET
62
A
MET
46
15
1_555
A
VAL
93
A
VAL
77
15
1_555
A
HIS
96
A
HIS
80
15
1_555
A
ILE
99
A
ILE
83
15
1_555
A
TYR
100
A
TYR
84
15
1_555
A
HOH
304
C
HOH
15
1_555
A
HOH
308
C
HOH
15
1_555
A
HOH
312
C
HOH
15
1_555
A
HOH
315
C
HOH
15
1_555
A
HOH
330
C
HOH
15
1_555
A
HOH
333
C
HOH
15
1_555
23
I 2 2 2