0.022183
0.000000
0.000000
0.000000
0.020606
0.000000
0.000000
0.000000
0.012739
0.00000
0.00000
0.00000
Ponna, S.K.
Myllykoski, M.
Boeckers, T.M.
Kursula, P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
45.080
48.530
78.500
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
UK
J. Neurochem.
1471-4159
145
449
463
10.1111/jnc.14322
29473168
Structural basis for PDZ domain interactions in the post-synaptic density scaffolding protein Shank3.
2018
100
1
PIXEL
2016-06-03
DECTRIS PILATUS3 6M
SINGLE WAVELENGTH
M
x-ray
1
0.9795
1.0
I04
Diamond
0.9795
SYNCHROTRON
DIAMOND BEAMLINE I04
10400.004
SH3 and multiple ankyrin repeat domains protein 3
2
man
polymer
18.015
water
6
nat
water
Shank3,Proline-rich synapse-associated protein 2,ProSAP2,SPANK-2
no
no
SVAILQKRDHEGFGFVLRGAKAETPIEEFTPTPAFPALQYLESVDVEGVAWKAGLRTGDFLIEVNGVNVVKVGHKQVVGL
IRQGGNRLVMKVVSVT
SVAILQKRDHEGFGFVLRGAKAETPIEEFTPTPAFPALQYLESVDVEGVAWKAGLRTGDFLIEVNGVNVVKVGHKQVVGL
IRQGGNRLVMKVVSVT
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Norway Rat
sample
1
96
Shank3, Prosap2
10116
Rattus norvegicus
562
Escherichia coli
Biological sequence
1
2.06
40.41
VAPOR DIFFUSION, SITTING DROP
0.1 M sodium acetate, 2.0 M ammonium sulphate
293
citation
repository
Initial release
Data collection
Database references
1
0
2018-03-07
1
1
2018-07-11
_citation.journal_volume
_citation.page_first
_citation.page_last
N
PDBE
Y
PDBE
2017-08-28
REL
REL
HOH
water
HOH
4
2
HOH
HOH
701
A
HOH
11
2
HOH
HOH
702
A
HOH
12
2
HOH
HOH
703
A
HOH
13
2
HOH
HOH
701
B
HOH
8
2
HOH
HOH
702
B
HOH
10
2
HOH
HOH
703
B
SER
579
n
1
SER
579
A
VAL
580
n
2
VAL
580
A
ALA
581
n
3
ALA
581
A
ILE
582
n
4
ILE
582
A
LEU
583
n
5
LEU
583
A
GLN
584
n
6
GLN
584
A
LYS
585
n
7
LYS
585
A
ARG
586
n
8
ARG
586
A
ASP
587
n
9
ASP
587
A
HIS
588
n
10
HIS
588
A
GLU
589
n
11
GLU
589
A
GLY
590
n
12
GLY
590
A
PHE
591
n
13
PHE
591
A
GLY
592
n
14
GLY
592
A
PHE
593
n
15
PHE
593
A
VAL
594
n
16
VAL
594
A
LEU
595
n
17
LEU
595
A
ARG
596
n
18
ARG
596
A
GLY
597
n
19
GLY
597
A
ALA
598
n
20
ALA
598
A
n
21
599
A
n
22
600
A
n
23
601
A
n
24
602
A
PRO
603
n
25
PRO
603
A
ILE
604
n
26
ILE
604
A
GLU
605
n
27
GLU
605
A
GLU
606
n
28
GLU
606
A
PHE
607
n
29
PHE
607
A
THR
608
n
30
THR
608
A
PRO
609
n
31
PRO
609
A
THR
610
n
32
THR
610
A
PRO
611
n
33
PRO
611
A
ALA
612
n
34
ALA
612
A
PHE
613
n
35
PHE
613
A
PRO
614
n
36
PRO
614
A
ALA
615
n
37
ALA
615
A
LEU
616
n
38
LEU
616
A
GLN
617
n
39
GLN
617
A
TYR
618
n
40
TYR
618
A
LEU
619
n
41
LEU
619
A
GLU
620
n
42
GLU
620
A
SER
621
n
43
SER
621
A
VAL
622
n
44
VAL
622
A
ASP
623
n
45
ASP
623
A
VAL
624
n
46
VAL
624
A
GLU
625
n
47
GLU
625
A
GLY
626
n
48
GLY
626
A
VAL
627
n
49
VAL
627
A
ALA
628
n
50
ALA
628
A
TRP
629
n
51
TRP
629
A
LYS
630
n
52
LYS
630
A
ALA
631
n
53
ALA
631
A
GLY
632
n
54
GLY
632
A
LEU
633
n
55
LEU
633
A
ARG
634
n
56
ARG
634
A
THR
635
n
57
THR
635
A
GLY
636
n
58
GLY
636
A
ASP
637
n
59
ASP
637
A
PHE
638
n
60
PHE
638
A
LEU
639
n
61
LEU
639
A
ILE
640
n
62
ILE
640
A
GLU
641
n
63
GLU
641
A
VAL
642
n
64
VAL
642
A
ASN
643
n
65
ASN
643
A
GLY
644
n
66
GLY
644
A
VAL
645
n
67
VAL
645
A
ASN
646
n
68
ASN
646
A
VAL
647
n
69
VAL
647
A
VAL
648
n
70
VAL
648
A
LYS
649
n
71
LYS
649
A
VAL
650
n
72
VAL
650
A
GLY
651
n
73
GLY
651
A
HIS
652
n
74
HIS
652
A
LYS
653
n
75
LYS
653
A
GLN
654
n
76
GLN
654
A
VAL
655
n
77
VAL
655
A
VAL
656
n
78
VAL
656
A
GLY
657
n
79
GLY
657
A
LEU
658
n
80
LEU
658
A
ILE
659
n
81
ILE
659
A
ARG
660
n
82
ARG
660
A
GLN
661
n
83
GLN
661
A
GLY
662
n
84
GLY
662
A
GLY
663
n
85
GLY
663
A
ASN
664
n
86
ASN
664
A
ARG
665
n
87
ARG
665
A
LEU
666
n
88
LEU
666
A
VAL
667
n
89
VAL
667
A
MET
668
n
90
MET
668
A
LYS
669
n
91
LYS
669
A
VAL
670
n
92
VAL
670
A
VAL
671
n
93
VAL
671
A
SER
672
n
94
SER
672
A
VAL
673
n
95
VAL
673
A
THR
674
n
96
THR
674
A
SER
579
n
1
SER
579
B
VAL
580
n
2
VAL
580
B
ALA
581
n
3
ALA
581
B
ILE
582
n
4
ILE
582
B
LEU
583
n
5
LEU
583
B
GLN
584
n
6
GLN
584
B
LYS
585
n
7
LYS
585
B
ARG
586
n
8
ARG
586
B
ASP
587
n
9
ASP
587
B
HIS
588
n
10
HIS
588
B
GLU
589
n
11
GLU
589
B
GLY
590
n
12
GLY
590
B
PHE
591
n
13
PHE
591
B
GLY
592
n
14
GLY
592
B
PHE
593
n
15
PHE
593
B
VAL
594
n
16
VAL
594
B
LEU
595
n
17
LEU
595
B
ARG
596
n
18
ARG
596
B
GLY
597
n
19
GLY
597
B
n
20
598
B
n
21
599
B
n
22
600
B
n
23
601
B
n
24
602
B
PRO
603
n
25
PRO
603
B
ILE
604
n
26
ILE
604
B
GLU
605
n
27
GLU
605
B
GLU
606
n
28
GLU
606
B
PHE
607
n
29
PHE
607
B
THR
608
n
30
THR
608
B
PRO
609
n
31
PRO
609
B
THR
610
n
32
THR
610
B
PRO
611
n
33
PRO
611
B
ALA
612
n
34
ALA
612
B
PHE
613
n
35
PHE
613
B
PRO
614
n
36
PRO
614
B
ALA
615
n
37
ALA
615
B
LEU
616
n
38
LEU
616
B
GLN
617
n
39
GLN
617
B
TYR
618
n
40
TYR
618
B
LEU
619
n
41
LEU
619
B
GLU
620
n
42
GLU
620
B
SER
621
n
43
SER
621
B
VAL
622
n
44
VAL
622
B
ASP
623
n
45
ASP
623
B
VAL
624
n
46
VAL
624
B
GLU
625
n
47
GLU
625
B
GLY
626
n
48
GLY
626
B
VAL
627
n
49
VAL
627
B
ALA
628
n
50
ALA
628
B
TRP
629
n
51
TRP
629
B
LYS
630
n
52
LYS
630
B
ALA
631
n
53
ALA
631
B
GLY
632
n
54
GLY
632
B
LEU
633
n
55
LEU
633
B
ARG
634
n
56
ARG
634
B
THR
635
n
57
THR
635
B
GLY
636
n
58
GLY
636
B
ASP
637
n
59
ASP
637
B
PHE
638
n
60
PHE
638
B
LEU
639
n
61
LEU
639
B
ILE
640
n
62
ILE
640
B
GLU
641
n
63
GLU
641
B
VAL
642
n
64
VAL
642
B
ASN
643
n
65
ASN
643
B
GLY
644
n
66
GLY
644
B
VAL
645
n
67
VAL
645
B
ASN
646
n
68
ASN
646
B
VAL
647
n
69
VAL
647
B
VAL
648
n
70
VAL
648
B
LYS
649
n
71
LYS
649
B
VAL
650
n
72
VAL
650
B
GLY
651
n
73
GLY
651
B
HIS
652
n
74
HIS
652
B
LYS
653
n
75
LYS
653
B
GLN
654
n
76
GLN
654
B
VAL
655
n
77
VAL
655
B
VAL
656
n
78
VAL
656
B
GLY
657
n
79
GLY
657
B
LEU
658
n
80
LEU
658
B
ILE
659
n
81
ILE
659
B
ARG
660
n
82
ARG
660
B
GLN
661
n
83
GLN
661
B
GLY
662
n
84
GLY
662
B
GLY
663
n
85
GLY
663
B
ASN
664
n
86
ASN
664
B
ARG
665
n
87
ARG
665
B
LEU
666
n
88
LEU
666
B
VAL
667
n
89
VAL
667
B
MET
668
n
90
MET
668
B
LYS
669
n
91
LYS
669
B
VAL
670
n
92
VAL
670
B
VAL
671
n
93
VAL
671
B
SER
672
n
94
SER
672
B
VAL
673
n
95
VAL
673
B
THR
674
n
96
THR
674
B
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
SAXS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LEU
583
A
N
LEU
5
A
O
LEU
666
A
O
LEU
88
A
O
LYS
669
A
O
LYS
91
A
N
ILE
640
A
N
ILE
62
A
N
VAL
642
A
N
VAL
64
A
O
VAL
645
A
O
VAL
67
A
N
VAL
594
A
N
VAL
16
A
O
GLU
620
A
O
GLU
42
B
N
LEU
583
B
N
LEU
5
B
O
LEU
666
B
O
LEU
88
B
O
LYS
669
B
O
LYS
91
B
N
ILE
640
B
N
ILE
62
B
N
VAL
642
B
N
VAL
64
B
O
VAL
645
B
O
VAL
67
B
N
VAL
594
B
N
VAL
16
B
O
GLU
620
B
O
GLU
42
1
A
LYS
599
A
LYS
21
1
Y
1
A
ALA
600
A
ALA
22
1
Y
1
A
GLU
601
A
GLU
23
1
Y
1
A
THR
602
A
THR
24
1
Y
1
B
ALA
598
B
ALA
20
1
Y
1
B
LYS
599
B
LYS
21
1
Y
1
B
ALA
600
B
ALA
22
1
Y
1
B
GLU
601
B
GLU
23
1
Y
1
B
THR
602
B
THR
24
1
Y
1
A
ILE
604
-98.35
58.55
1
B
ILE
604
-103.76
56.73
1
B
GLU
605
-144.55
-2.61
1
B
VAL
650
-101.77
-92.48
0.2966
0.2794
0.2813
2.300
25.272
786
7984
9.84
98.96
0.40
1
FREE R-VALUE
1.36
MOLECULAR REPLACEMENT
41.10
0.90
1.11
2.300
25.272
6
1409
0
0
1403
0.004
1427
0.707
1929
22.421
839
0.051
225
0.006
247
0.4756
0.4152
2.4441
129
1168
98.00
0.4414
0.3872
2.6326
130
1169
99.00
0.4741
0.3680
2.8972
125
1165
98.00
0.3683
0.3603
3.3156
134
1201
100.00
0.2710
0.2677
4.1743
129
1211
99.00
0.2289
0.2185
25.2732
139
1284
99.00
59.3
2.3
30
5OVA
8035
1
0.057
1
22.1
6.3
99.4
2.3
2.36
0.912
1.167
1
6.8
99.8
refinement
PHENIX
(1.12_2829: ???)
data reduction
XDS
data scaling
XDS
phasing
PHASER
N
SH3 and multiple ankyrin repeat domains protein 3
Apo PDZ domain from rat Shank3
1
N
N
1
N
N
2
N
N
2
N
N
A
GLY
626
A
GLY
48
HELX_P
A
ALA
631
A
ALA
53
1
AA1
6
A
GLY
651
A
GLY
73
HELX_P
A
GLY
662
A
GLY
84
1
AA2
12
B
GLY
626
B
GLY
48
HELX_P
B
ALA
631
B
ALA
53
1
AA3
6
B
GLY
651
B
GLY
73
HELX_P
B
GLY
662
B
GLY
84
1
AA4
12
PROTEIN BINDING
PDZ domain, peptide binding, post-synaptic density, PROTEIN BINDING
SHAN3_RAT
UNP
1
570
Q9JLU4
VAILQKRDHEGFGFVLRGAKAETPIEEFTPTPAFPALQYLESVDVEGVAWKAGLRTGDFLIEVNGVNVVKVGHKQVVGLI
RQGGNRLVMKVVSVT
570
664
5OVA
580
674
Q9JLU4
A
1
2
96
570
664
5OVA
580
674
Q9JLU4
B
1
2
96
1
expression tag
SER
579
5OVA
A
Q9JLU4
UNP
1
2
expression tag
SER
579
5OVA
B
Q9JLU4
UNP
1
4
2
4
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
580
A
VAL
2
A
GLN
584
A
GLN
6
A
ARG
665
A
ARG
87
A
SER
672
A
SER
94
A
ASP
637
A
ASP
59
A
VAL
642
A
VAL
64
A
VAL
645
A
VAL
67
A
ASN
646
A
ASN
68
A
PHE
593
A
PHE
15
A
GLY
597
A
GLY
19
A
GLN
617
A
GLN
39
A
VAL
622
A
VAL
44
B
VAL
580
B
VAL
2
B
GLN
584
B
GLN
6
B
ARG
665
B
ARG
87
B
SER
672
B
SER
94
B
ASP
637
B
ASP
59
B
VAL
642
B
VAL
64
B
VAL
645
B
VAL
67
B
ASN
646
B
ASN
68
B
PHE
593
B
PHE
15
B
ARG
596
B
ARG
18
B
TYR
618
B
TYR
40
B
VAL
622
B
VAL
44
19
P 21 21 21