0.022183 0.000000 0.000000 0.000000 0.020606 0.000000 0.000000 0.000000 0.012739 0.00000 0.00000 0.00000 Ponna, S.K. Myllykoski, M. Boeckers, T.M. Kursula, P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 45.080 48.530 78.500 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J. Neurochem. 1471-4159 145 449 463 10.1111/jnc.14322 29473168 Structural basis for PDZ domain interactions in the post-synaptic density scaffolding protein Shank3. 2018 100 1 PIXEL 2016-06-03 DECTRIS PILATUS3 6M SINGLE WAVELENGTH M x-ray 1 0.9795 1.0 I04 Diamond 0.9795 SYNCHROTRON DIAMOND BEAMLINE I04 10400.004 SH3 and multiple ankyrin repeat domains protein 3 2 man polymer 18.015 water 6 nat water Shank3,Proline-rich synapse-associated protein 2,ProSAP2,SPANK-2 no no SVAILQKRDHEGFGFVLRGAKAETPIEEFTPTPAFPALQYLESVDVEGVAWKAGLRTGDFLIEVNGVNVVKVGHKQVVGL IRQGGNRLVMKVVSVT SVAILQKRDHEGFGFVLRGAKAETPIEEFTPTPAFPALQYLESVDVEGVAWKAGLRTGDFLIEVNGVNVVKVGHKQVVGL IRQGGNRLVMKVVSVT A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Norway Rat sample 1 96 Shank3, Prosap2 10116 Rattus norvegicus 562 Escherichia coli Biological sequence 1 2.06 40.41 VAPOR DIFFUSION, SITTING DROP 0.1 M sodium acetate, 2.0 M ammonium sulphate 293 citation repository Initial release Data collection Database references 1 0 2018-03-07 1 1 2018-07-11 _citation.journal_volume _citation.page_first _citation.page_last N PDBE Y PDBE 2017-08-28 REL REL HOH water HOH 4 2 HOH HOH 701 A HOH 11 2 HOH HOH 702 A HOH 12 2 HOH HOH 703 A HOH 13 2 HOH HOH 701 B HOH 8 2 HOH HOH 702 B HOH 10 2 HOH HOH 703 B SER 579 n 1 SER 579 A VAL 580 n 2 VAL 580 A ALA 581 n 3 ALA 581 A ILE 582 n 4 ILE 582 A LEU 583 n 5 LEU 583 A GLN 584 n 6 GLN 584 A LYS 585 n 7 LYS 585 A ARG 586 n 8 ARG 586 A ASP 587 n 9 ASP 587 A HIS 588 n 10 HIS 588 A GLU 589 n 11 GLU 589 A GLY 590 n 12 GLY 590 A PHE 591 n 13 PHE 591 A GLY 592 n 14 GLY 592 A PHE 593 n 15 PHE 593 A VAL 594 n 16 VAL 594 A LEU 595 n 17 LEU 595 A ARG 596 n 18 ARG 596 A GLY 597 n 19 GLY 597 A ALA 598 n 20 ALA 598 A n 21 599 A n 22 600 A n 23 601 A n 24 602 A PRO 603 n 25 PRO 603 A ILE 604 n 26 ILE 604 A GLU 605 n 27 GLU 605 A GLU 606 n 28 GLU 606 A PHE 607 n 29 PHE 607 A THR 608 n 30 THR 608 A PRO 609 n 31 PRO 609 A THR 610 n 32 THR 610 A PRO 611 n 33 PRO 611 A ALA 612 n 34 ALA 612 A PHE 613 n 35 PHE 613 A PRO 614 n 36 PRO 614 A ALA 615 n 37 ALA 615 A LEU 616 n 38 LEU 616 A GLN 617 n 39 GLN 617 A TYR 618 n 40 TYR 618 A LEU 619 n 41 LEU 619 A GLU 620 n 42 GLU 620 A SER 621 n 43 SER 621 A VAL 622 n 44 VAL 622 A ASP 623 n 45 ASP 623 A VAL 624 n 46 VAL 624 A GLU 625 n 47 GLU 625 A GLY 626 n 48 GLY 626 A VAL 627 n 49 VAL 627 A ALA 628 n 50 ALA 628 A TRP 629 n 51 TRP 629 A LYS 630 n 52 LYS 630 A ALA 631 n 53 ALA 631 A GLY 632 n 54 GLY 632 A LEU 633 n 55 LEU 633 A ARG 634 n 56 ARG 634 A THR 635 n 57 THR 635 A GLY 636 n 58 GLY 636 A ASP 637 n 59 ASP 637 A PHE 638 n 60 PHE 638 A LEU 639 n 61 LEU 639 A ILE 640 n 62 ILE 640 A GLU 641 n 63 GLU 641 A VAL 642 n 64 VAL 642 A ASN 643 n 65 ASN 643 A GLY 644 n 66 GLY 644 A VAL 645 n 67 VAL 645 A ASN 646 n 68 ASN 646 A VAL 647 n 69 VAL 647 A VAL 648 n 70 VAL 648 A LYS 649 n 71 LYS 649 A VAL 650 n 72 VAL 650 A GLY 651 n 73 GLY 651 A HIS 652 n 74 HIS 652 A LYS 653 n 75 LYS 653 A GLN 654 n 76 GLN 654 A VAL 655 n 77 VAL 655 A VAL 656 n 78 VAL 656 A GLY 657 n 79 GLY 657 A LEU 658 n 80 LEU 658 A ILE 659 n 81 ILE 659 A ARG 660 n 82 ARG 660 A GLN 661 n 83 GLN 661 A GLY 662 n 84 GLY 662 A GLY 663 n 85 GLY 663 A ASN 664 n 86 ASN 664 A ARG 665 n 87 ARG 665 A LEU 666 n 88 LEU 666 A VAL 667 n 89 VAL 667 A MET 668 n 90 MET 668 A LYS 669 n 91 LYS 669 A VAL 670 n 92 VAL 670 A VAL 671 n 93 VAL 671 A SER 672 n 94 SER 672 A VAL 673 n 95 VAL 673 A THR 674 n 96 THR 674 A SER 579 n 1 SER 579 B VAL 580 n 2 VAL 580 B ALA 581 n 3 ALA 581 B ILE 582 n 4 ILE 582 B LEU 583 n 5 LEU 583 B GLN 584 n 6 GLN 584 B LYS 585 n 7 LYS 585 B ARG 586 n 8 ARG 586 B ASP 587 n 9 ASP 587 B HIS 588 n 10 HIS 588 B GLU 589 n 11 GLU 589 B GLY 590 n 12 GLY 590 B PHE 591 n 13 PHE 591 B GLY 592 n 14 GLY 592 B PHE 593 n 15 PHE 593 B VAL 594 n 16 VAL 594 B LEU 595 n 17 LEU 595 B ARG 596 n 18 ARG 596 B GLY 597 n 19 GLY 597 B n 20 598 B n 21 599 B n 22 600 B n 23 601 B n 24 602 B PRO 603 n 25 PRO 603 B ILE 604 n 26 ILE 604 B GLU 605 n 27 GLU 605 B GLU 606 n 28 GLU 606 B PHE 607 n 29 PHE 607 B THR 608 n 30 THR 608 B PRO 609 n 31 PRO 609 B THR 610 n 32 THR 610 B PRO 611 n 33 PRO 611 B ALA 612 n 34 ALA 612 B PHE 613 n 35 PHE 613 B PRO 614 n 36 PRO 614 B ALA 615 n 37 ALA 615 B LEU 616 n 38 LEU 616 B GLN 617 n 39 GLN 617 B TYR 618 n 40 TYR 618 B LEU 619 n 41 LEU 619 B GLU 620 n 42 GLU 620 B SER 621 n 43 SER 621 B VAL 622 n 44 VAL 622 B ASP 623 n 45 ASP 623 B VAL 624 n 46 VAL 624 B GLU 625 n 47 GLU 625 B GLY 626 n 48 GLY 626 B VAL 627 n 49 VAL 627 B ALA 628 n 50 ALA 628 B TRP 629 n 51 TRP 629 B LYS 630 n 52 LYS 630 B ALA 631 n 53 ALA 631 B GLY 632 n 54 GLY 632 B LEU 633 n 55 LEU 633 B ARG 634 n 56 ARG 634 B THR 635 n 57 THR 635 B GLY 636 n 58 GLY 636 B ASP 637 n 59 ASP 637 B PHE 638 n 60 PHE 638 B LEU 639 n 61 LEU 639 B ILE 640 n 62 ILE 640 B GLU 641 n 63 GLU 641 B VAL 642 n 64 VAL 642 B ASN 643 n 65 ASN 643 B GLY 644 n 66 GLY 644 B VAL 645 n 67 VAL 645 B ASN 646 n 68 ASN 646 B VAL 647 n 69 VAL 647 B VAL 648 n 70 VAL 648 B LYS 649 n 71 LYS 649 B VAL 650 n 72 VAL 650 B GLY 651 n 73 GLY 651 B HIS 652 n 74 HIS 652 B LYS 653 n 75 LYS 653 B GLN 654 n 76 GLN 654 B VAL 655 n 77 VAL 655 B VAL 656 n 78 VAL 656 B GLY 657 n 79 GLY 657 B LEU 658 n 80 LEU 658 B ILE 659 n 81 ILE 659 B ARG 660 n 82 ARG 660 B GLN 661 n 83 GLN 661 B GLY 662 n 84 GLY 662 B GLY 663 n 85 GLY 663 B ASN 664 n 86 ASN 664 B ARG 665 n 87 ARG 665 B LEU 666 n 88 LEU 666 B VAL 667 n 89 VAL 667 B MET 668 n 90 MET 668 B LYS 669 n 91 LYS 669 B VAL 670 n 92 VAL 670 B VAL 671 n 93 VAL 671 B SER 672 n 94 SER 672 B VAL 673 n 95 VAL 673 B THR 674 n 96 THR 674 B author_and_software_defined_assembly PISA 1 monomeric author_and_software_defined_assembly PISA 1 monomeric SAXS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 583 A N LEU 5 A O LEU 666 A O LEU 88 A O LYS 669 A O LYS 91 A N ILE 640 A N ILE 62 A N VAL 642 A N VAL 64 A O VAL 645 A O VAL 67 A N VAL 594 A N VAL 16 A O GLU 620 A O GLU 42 B N LEU 583 B N LEU 5 B O LEU 666 B O LEU 88 B O LYS 669 B O LYS 91 B N ILE 640 B N ILE 62 B N VAL 642 B N VAL 64 B O VAL 645 B O VAL 67 B N VAL 594 B N VAL 16 B O GLU 620 B O GLU 42 1 A LYS 599 A LYS 21 1 Y 1 A ALA 600 A ALA 22 1 Y 1 A GLU 601 A GLU 23 1 Y 1 A THR 602 A THR 24 1 Y 1 B ALA 598 B ALA 20 1 Y 1 B LYS 599 B LYS 21 1 Y 1 B ALA 600 B ALA 22 1 Y 1 B GLU 601 B GLU 23 1 Y 1 B THR 602 B THR 24 1 Y 1 A ILE 604 -98.35 58.55 1 B ILE 604 -103.76 56.73 1 B GLU 605 -144.55 -2.61 1 B VAL 650 -101.77 -92.48 0.2966 0.2794 0.2813 2.300 25.272 786 7984 9.84 98.96 0.40 1 FREE R-VALUE 1.36 MOLECULAR REPLACEMENT 41.10 0.90 1.11 2.300 25.272 6 1409 0 0 1403 0.004 1427 0.707 1929 22.421 839 0.051 225 0.006 247 0.4756 0.4152 2.4441 129 1168 98.00 0.4414 0.3872 2.6326 130 1169 99.00 0.4741 0.3680 2.8972 125 1165 98.00 0.3683 0.3603 3.3156 134 1201 100.00 0.2710 0.2677 4.1743 129 1211 99.00 0.2289 0.2185 25.2732 139 1284 99.00 59.3 2.3 30 5OVA 8035 1 0.057 1 22.1 6.3 99.4 2.3 2.36 0.912 1.167 1 6.8 99.8 refinement PHENIX (1.12_2829: ???) data reduction XDS data scaling XDS phasing PHASER N SH3 and multiple ankyrin repeat domains protein 3 Apo PDZ domain from rat Shank3 1 N N 1 N N 2 N N 2 N N A GLY 626 A GLY 48 HELX_P A ALA 631 A ALA 53 1 AA1 6 A GLY 651 A GLY 73 HELX_P A GLY 662 A GLY 84 1 AA2 12 B GLY 626 B GLY 48 HELX_P B ALA 631 B ALA 53 1 AA3 6 B GLY 651 B GLY 73 HELX_P B GLY 662 B GLY 84 1 AA4 12 PROTEIN BINDING PDZ domain, peptide binding, post-synaptic density, PROTEIN BINDING SHAN3_RAT UNP 1 570 Q9JLU4 VAILQKRDHEGFGFVLRGAKAETPIEEFTPTPAFPALQYLESVDVEGVAWKAGLRTGDFLIEVNGVNVVKVGHKQVVGLI RQGGNRLVMKVVSVT 570 664 5OVA 580 674 Q9JLU4 A 1 2 96 570 664 5OVA 580 674 Q9JLU4 B 1 2 96 1 expression tag SER 579 5OVA A Q9JLU4 UNP 1 2 expression tag SER 579 5OVA B Q9JLU4 UNP 1 4 2 4 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 580 A VAL 2 A GLN 584 A GLN 6 A ARG 665 A ARG 87 A SER 672 A SER 94 A ASP 637 A ASP 59 A VAL 642 A VAL 64 A VAL 645 A VAL 67 A ASN 646 A ASN 68 A PHE 593 A PHE 15 A GLY 597 A GLY 19 A GLN 617 A GLN 39 A VAL 622 A VAL 44 B VAL 580 B VAL 2 B GLN 584 B GLN 6 B ARG 665 B ARG 87 B SER 672 B SER 94 B ASP 637 B ASP 59 B VAL 642 B VAL 64 B VAL 645 B VAL 67 B ASN 646 B ASN 68 B PHE 593 B PHE 15 B ARG 596 B ARG 18 B TYR 618 B TYR 40 B VAL 622 B VAL 44 19 P 21 21 21