0.031162 0.017992 0.000000 0.000000 0.035983 0.000000 0.000000 0.000000 0.006657 0.00000 0.00000 0.00000 Ponna, S.K. Myllykoski, M. Boeckers, T.M. Kursula, P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 32.090 32.090 150.220 C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking UK J. Neurochem. 1471-4159 145 449 463 10.1111/jnc.14322 29473168 Structural basis for PDZ domain interactions in the post-synaptic density scaffolding protein Shank3. 2018 100 1 PIXEL 2016-05-28 DECTRIS PILATUS3 6M SINGLE WAVELENGTH M x-ray 1 1.000 1.0 P13 (MX1) PETRA III, EMBL c/o DESY 1.000 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) 10400.004 SH3 and multiple ankyrin repeat domains protein 3 PDZ domain, UNP residues 570-664 1 man polymer 685.810 Adhesion G protein-coupled receptor L1 UNP residues 1510-1515 1 syn polymer 18.015 water 63 nat water Shank3,Proline-rich synapse-associated protein 2,ProSAP2,SPANK-2 Calcium-independent alpha-latrotoxin receptor 1,CIRL-1,Latrophilin-1 no no SVAILQKRDHEGFGFVLRGAKAETPIEEFTPTPAFPALQYLESVDVEGVAWKAGLRTGDFLIEVNGVNVVKVGHKQVVGL IRQGGNRLVMKVVSVT SVAILQKRDHEGFGFVLRGAKAETPIEEFTPTPAFPALQYLESVDVEGVAWKAGLRTGDFLIEVNGVNVVKVGHKQVVGL IRQGGNRLVMKVVSVT A polypeptide(L) no yes (ACE)QLVTSL XQLVTSL B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Rat sample 1 96 Shank3, Prosap2 10116 Rattus norvegicus 562 Escherichia coli Biological sequence 1 2.01 38.93 VAPOR DIFFUSION, SITTING DROP 0.1 M HEPES pH 7.5, 2% PEG 400, 2 M ammonium sulphate 293 citation repository Initial release Data collection Database references 1 0 2018-03-07 1 1 2018-07-11 _citation.journal_volume _citation.page_first _citation.page_last N PDBE Y PDBE 2017-08-29 REL REL 1 A O HOH 755 6.78 HOH water 10116 Rat Rattus norvegicus sample 1 7 HOH 39 3 HOH HOH 701 A HOH 64 3 HOH HOH 702 A HOH 50 3 HOH HOH 703 A HOH 19 3 HOH HOH 704 A HOH 28 3 HOH HOH 705 A HOH 3 3 HOH HOH 706 A HOH 63 3 HOH HOH 707 A HOH 4 3 HOH HOH 708 A HOH 5 3 HOH HOH 709 A HOH 14 3 HOH HOH 710 A HOH 27 3 HOH HOH 711 A HOH 24 3 HOH HOH 712 A HOH 38 3 HOH HOH 713 A HOH 33 3 HOH HOH 714 A HOH 2 3 HOH HOH 715 A HOH 7 3 HOH HOH 716 A HOH 37 3 HOH HOH 717 A HOH 12 3 HOH HOH 718 A HOH 11 3 HOH HOH 719 A HOH 17 3 HOH HOH 720 A HOH 1 3 HOH HOH 721 A HOH 8 3 HOH HOH 722 A HOH 16 3 HOH HOH 723 A HOH 61 3 HOH HOH 724 A HOH 21 3 HOH HOH 725 A HOH 52 3 HOH HOH 726 A HOH 13 3 HOH HOH 727 A HOH 9 3 HOH HOH 728 A HOH 40 3 HOH HOH 729 A HOH 53 3 HOH HOH 730 A HOH 18 3 HOH HOH 731 A HOH 32 3 HOH HOH 732 A HOH 31 3 HOH HOH 733 A HOH 44 3 HOH HOH 734 A HOH 20 3 HOH HOH 735 A HOH 69 3 HOH HOH 736 A HOH 30 3 HOH HOH 737 A HOH 36 3 HOH HOH 738 A HOH 43 3 HOH HOH 739 A HOH 65 3 HOH HOH 740 A HOH 29 3 HOH HOH 741 A HOH 25 3 HOH HOH 742 A HOH 22 3 HOH HOH 743 A HOH 67 3 HOH HOH 744 A HOH 48 3 HOH HOH 745 A HOH 68 3 HOH HOH 746 A HOH 23 3 HOH HOH 747 A HOH 59 3 HOH HOH 748 A HOH 66 3 HOH HOH 749 A HOH 26 3 HOH HOH 750 A HOH 55 3 HOH HOH 751 A HOH 57 3 HOH HOH 752 A HOH 60 3 HOH HOH 753 A HOH 56 3 HOH HOH 754 A HOH 58 3 HOH HOH 755 A HOH 15 3 HOH HOH 1601 B HOH 6 3 HOH HOH 1602 B HOH 45 3 HOH HOH 1603 B HOH 35 3 HOH HOH 1604 B HOH 10 3 HOH HOH 1605 B HOH 42 3 HOH HOH 1606 B HOH 54 3 HOH HOH 1607 B HOH 62 3 HOH HOH 1608 B SER 579 n 1 SER 579 A VAL 580 n 2 VAL 580 A ALA 581 n 3 ALA 581 A ILE 582 n 4 ILE 582 A LEU 583 n 5 LEU 583 A GLN 584 n 6 GLN 584 A LYS 585 n 7 LYS 585 A ARG 586 n 8 ARG 586 A ASP 587 n 9 ASP 587 A HIS 588 n 10 HIS 588 A GLU 589 n 11 GLU 589 A GLY 590 n 12 GLY 590 A PHE 591 n 13 PHE 591 A GLY 592 n 14 GLY 592 A PHE 593 n 15 PHE 593 A VAL 594 n 16 VAL 594 A LEU 595 n 17 LEU 595 A ARG 596 n 18 ARG 596 A GLY 597 n 19 GLY 597 A ALA 598 n 20 ALA 598 A LYS 599 n 21 LYS 599 A ALA 600 n 22 ALA 600 A GLU 601 n 23 GLU 601 A THR 602 n 24 THR 602 A PRO 603 n 25 PRO 603 A ILE 604 n 26 ILE 604 A GLU 605 n 27 GLU 605 A GLU 606 n 28 GLU 606 A PHE 607 n 29 PHE 607 A THR 608 n 30 THR 608 A PRO 609 n 31 PRO 609 A THR 610 n 32 THR 610 A PRO 611 n 33 PRO 611 A ALA 612 n 34 ALA 612 A PHE 613 n 35 PHE 613 A PRO 614 n 36 PRO 614 A ALA 615 n 37 ALA 615 A LEU 616 n 38 LEU 616 A GLN 617 n 39 GLN 617 A TYR 618 n 40 TYR 618 A LEU 619 n 41 LEU 619 A GLU 620 n 42 GLU 620 A SER 621 n 43 SER 621 A VAL 622 n 44 VAL 622 A ASP 623 n 45 ASP 623 A VAL 624 n 46 VAL 624 A GLU 625 n 47 GLU 625 A GLY 626 n 48 GLY 626 A VAL 627 n 49 VAL 627 A ALA 628 n 50 ALA 628 A TRP 629 n 51 TRP 629 A LYS 630 n 52 LYS 630 A ALA 631 n 53 ALA 631 A GLY 632 n 54 GLY 632 A LEU 633 n 55 LEU 633 A ARG 634 n 56 ARG 634 A THR 635 n 57 THR 635 A GLY 636 n 58 GLY 636 A ASP 637 n 59 ASP 637 A PHE 638 n 60 PHE 638 A LEU 639 n 61 LEU 639 A ILE 640 n 62 ILE 640 A GLU 641 n 63 GLU 641 A VAL 642 n 64 VAL 642 A ASN 643 n 65 ASN 643 A GLY 644 n 66 GLY 644 A VAL 645 n 67 VAL 645 A ASN 646 n 68 ASN 646 A VAL 647 n 69 VAL 647 A VAL 648 n 70 VAL 648 A LYS 649 n 71 LYS 649 A VAL 650 n 72 VAL 650 A GLY 651 n 73 GLY 651 A HIS 652 n 74 HIS 652 A LYS 653 n 75 LYS 653 A GLN 654 n 76 GLN 654 A VAL 655 n 77 VAL 655 A VAL 656 n 78 VAL 656 A GLY 657 n 79 GLY 657 A LEU 658 n 80 LEU 658 A ILE 659 n 81 ILE 659 A ARG 660 n 82 ARG 660 A GLN 661 n 83 GLN 661 A GLY 662 n 84 GLY 662 A GLY 663 n 85 GLY 663 A ASN 664 n 86 ASN 664 A ARG 665 n 87 ARG 665 A LEU 666 n 88 LEU 666 A VAL 667 n 89 VAL 667 A MET 668 n 90 MET 668 A LYS 669 n 91 LYS 669 A VAL 670 n 92 VAL 670 A VAL 671 n 93 VAL 671 A SER 672 n 94 SER 672 A VAL 673 n 95 VAL 673 A THR 674 n 96 THR 674 A ACE 1509 n 1 ACE 1509 B GLN 1510 n 2 GLN 1510 B LEU 1511 n 3 LEU 1511 B VAL 1512 n 4 VAL 1512 B THR 1513 n 5 THR 1513 B SER 1514 n 6 SER 1514 B LEU 1515 n 7 LEU 1515 B 1.1456 -0.6894 -0.2063 0.5420 -0.1597 1.5710 -0.0885 -0.0893 0.0724 0.1139 0.1514 -0.0047 0.1484 0.1763 0.0008 0.1754 0.0067 -0.0070 0.1746 -0.0190 0.1726 refined -8.3068 -6.0155 14.1081 X-RAY DIFFRACTION 0.0338 -0.1690 0.0072 -0.0087 -0.0534 0.0071 0.1952 -0.0323 -0.0677 -0.0011 -0.0860 -0.0698 -0.3088 0.2008 0.0001 0.2160 0.0376 0.0043 0.2755 0.0188 0.2192 refined -5.9267 -6.2636 19.0146 X-RAY DIFFRACTION 0.0674 0.0565 -0.0307 0.0516 -0.0575 0.0549 0.1689 0.0095 0.1603 -0.1543 0.0427 -0.3616 -0.1299 -0.1483 -0.0001 0.2344 0.0150 -0.0138 0.2057 -0.0065 0.1642 refined -12.2920 -5.2760 5.0030 X-RAY DIFFRACTION 1.0680 0.1225 -0.1888 0.3514 -0.8195 1.1255 0.0533 -0.0723 0.0883 -0.0757 0.1969 -0.0764 -0.0660 -0.1497 0.1426 0.2242 0.0668 -0.0280 0.1710 0.0071 0.1471 refined -11.3504 -6.8600 13.3467 X-RAY DIFFRACTION 0.4824 -0.0264 -0.7335 0.4549 0.0058 1.1226 -0.3147 0.3004 -0.2938 -0.5687 0.3565 -0.2559 0.3041 0.0896 -0.0059 0.2744 0.1934 0.1067 0.1908 -0.0556 0.2794 refined 0.4230 -17.0586 9.3722 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 chain 'A' and (resid 617 through 662 ) X-RAY DIFFRACTION 2 chain 'A' and (resid 663 through 674 ) X-RAY DIFFRACTION 3 chain 'B' and (resid 1510 through 1515 ) X-RAY DIFFRACTION 4 chain 'A' and (resid 579 through 607 ) X-RAY DIFFRACTION 5 chain 'A' and (resid 608 through 616 ) author_and_software_defined_assembly PISA 2 dimeric SAXS 1140 -5 5630 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 583 A N LEU 5 A O LEU 666 A O LEU 88 A O VAL 671 A O VAL 93 A N PHE 638 A N PHE 60 A N VAL 642 A N VAL 64 A O VAL 645 A O VAL 67 A O TYR 618 A O TYR 40 A N ARG 596 A N ARG 18 A N GLY 597 A N GLY 19 B O LEU 1511 B O LEU 3 1 A HOH 749 C HOH 1 A HOH 751 C HOH 1 A B O O HOH HOH 731 1606 2.17 1 B B O O HOH HOH 1607 1608 1.90 1_555 6_555 1 A ALA 600 -162.83 -39.28 1 A GLU 601 70.09 -45.26 1 A GLU 605 -170.97 -69.28 0.2355 0.1934 0.1954 1.500 27.791 737 14613 5.04 99.61 0.21 1 FREE R-VALUE 1.36 30.91 0.90 1.11 1.500 27.791 63 846 0 0 783 0.011 813 1.038 1104 21.263 299 0.085 131 0.008 143 0.3763 0.3365 1.6158 144 2728 99.00 0.2782 0.2648 1.7784 149 2733 100.00 0.2471 0.2011 2.0356 146 2739 100.00 0.2319 0.1920 2.5644 147 2781 100.00 0.2150 0.1702 27.7955 151 2895 100.00 28 1.50 50 5OVP 14688 1.00 0.095 1 15.4 10.7 99.7 1.50 1.54 1055 0.557 2.457 1 10 98.4 refinement PHENIX (1.11.1_2575: ???) data reduction XDS data scaling XDS phasing PHASER N SH3 and multiple ankyrin repeat domains protein 3, Adhesion G protein-coupled receptor L1 PDZ domain from rat Shank3 bound to the C terminus of CIRL 1 N N 2 N N 3 N N 3 N N A GLY 626 A GLY 48 HELX_P A ALA 631 A ALA 53 1 AA1 6 A GLY 651 A GLY 73 HELX_P A GLY 662 A GLY 84 1 AA2 12 covale 1.317 both B ACE 1509 B C ACE 1 1_555 B GLN 1510 B N GLN 2 1_555 PROTEIN BINDING PDZ domain, peptide binding, post-synaptic density, C terminus, PROTEIN BINDING A ILE 604 A ILE 26 1 A GLU 605 A GLU 27 5.85 SHAN3_RAT UNP 1 570 Q9JLU4 VAILQKRDHEGFGFVLRGAKAETPIEEFTPTPAFPALQYLESVDVEGVAWKAGLRTGDFLIEVNGVNVVKVGHKQVVGLI RQGGNRLVMKVVSVT AGRL1_RAT UNP 2 1510 O88917 QLVTSL 570 664 5OVP 580 674 Q9JLU4 A 1 2 96 1510 1515 5OVP 1510 1515 O88917 B 2 2 7 1 expression tag SER 579 5OVP A Q9JLU4 UNP 1 2 acetylation ACE 1509 5OVP B O88917 UNP 1 4 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 580 A VAL 2 A GLN 584 A GLN 6 A ARG 665 A ARG 87 A SER 672 A SER 94 A ASP 637 A ASP 59 A VAL 642 A VAL 64 A VAL 645 A VAL 67 A ASN 646 A ASN 68 A GLN 617 A GLN 39 A VAL 622 A VAL 44 A PHE 593 A PHE 15 A GLY 597 A GLY 19 B LEU 1511 B LEU 3 B SER 1514 B SER 6 153 P 32 1 2