0.006915
0.000000
0.000817
-0.000000
0.013454
0.000000
0.000000
-0.000000
0.016160
0.00000
0.00000
0.00000
van den berg, B.
Pathania, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
96.74
90.00
144.610
74.330
62.310
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
S
C
N
146
N
C
N
147
N
O
N
148
S
C
N
149
N
C
N
150
N
C
N
151
N
C
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
N
N
167
S
C
N
168
N
C
N
169
N
O
N
170
N
C
N
171
N
C
N
172
N
C
N
173
N
C
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
N
N
189
S
C
N
190
N
C
N
191
N
O
N
192
N
C
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
N
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
N
N
214
S
C
N
215
N
C
N
216
N
O
N
217
N
C
N
218
N
C
N
219
N
S
N
220
N
C
N
221
N
O
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
N
N
234
S
C
N
235
N
C
N
236
N
O
N
237
N
C
Y
238
N
C
Y
239
N
C
Y
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
N
244
N
O
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
S
C
N
258
N
C
N
259
N
O
N
260
N
C
N
261
N
C
N
262
N
C
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
O
N
279
N
O
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
N
N
288
S
C
N
289
N
C
N
290
N
O
N
291
R
C
N
292
N
O
N
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
N
C
Y
309
N
C
Y
310
N
C
Y
311
N
C
Y
312
N
N
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
N
342
N
O
N
343
N
O
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
N
N
356
S
C
N
357
N
C
N
358
N
O
N
359
N
C
N
360
N
C
N
361
N
C
N
362
N
O
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
doub
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
doub
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
doub
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
Y
233
N
doub
Y
234
N
sing
Y
235
N
sing
N
236
N
sing
Y
237
N
doub
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
Y
302
N
doub
Y
303
N
sing
Y
304
N
sing
N
305
N
sing
Y
306
N
doub
Y
307
N
sing
Y
308
N
sing
N
309
N
sing
Y
310
N
sing
Y
311
N
doub
N
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
doub
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
Y
330
N
doub
Y
331
N
sing
Y
332
N
sing
N
333
N
sing
Y
334
N
doub
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
doub
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
UK
Structure
STRUE6
2005
1878-4186
26
708
721.e4
10.1016/j.str.2018.03.010
29657131
Unusual Constriction Zones in the Major Porins OmpU and OmpT from Vibrio cholerae.
2018
10.2210/pdb5oyk/pdb
pdb_00005oyk
298
1
PIXEL
2016-02-19
DECTRIS PILATUS 6M-F
Double Crystal
SINGLE WAVELENGTH
M
x-ray
1
0.979
1.0
I02
Diamond
0.979
SYNCHROTRON
DIAMOND BEAMLINE I02
35424.594
Gram-negative porin family protein
1
man
polymer
OmpT protein,Outer membrane porin-like protein OmpT,Porin
no
no
AEILKSDAGTVDFYGQLRTELKFLEDKDPTIGSGSSRAGVDANYTVNDSLALQGKVEFALKDSGDMYVRNHILGVKTNFG
KFSFGKQWTTSDDVYGADYSYFFGGTGLRYGTLSDALHDSQVKYVYEADSFWVKAGYGFPEDNAKQELAELYVGATFGDL
AVHAGGGQNRDKAFKVGSNTVGTTTTDIKADVTNSYFEVTGEYTIGDALIGVTYYNAELDVENNPLVIDEDAISVAGTYK
VADKTKLYAGYEYVMQEANTGADEDGTLVYLGVEYKFASWARVYAEYGYGDGTTLGYTNKGSDAEVKATKVDSANNFGIG
ARYYW
AEILKSDAGTVDFYGQLRTELKFLEDKDPTIGSGSSRAGVDANYTVNDSLALQGKVEFALKDSGDMYVRNHILGVKTNFG
KFSFGKQWTTSDDVYGADYSYFFGGTGLRYGTLSDALHDSQVKYVYEADSFWVKAGYGFPEDNAKQELAELYVGATFGDL
AVHAGGGQNRDKAFKVGSNTVGTTTTDIKADVTNSYFEVTGEYTIGDALIGVTYYNAELDVENNPLVIDEDAISVAGTYK
VADKTKLYAGYEYVMQEANTGADEDGTLVYLGVEYKFASWARVYAEYGYGDGTTLGYTNKGSDAEVKATKVDSANNFGIG
ARYYW
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
arabinose-inducible promoter
sample
1
325
ompT, DN30_688, EN12_08995, ERS013173_00485, ERS013186_03149, ERS013197_04241, ERS013198_02336, ERS013201_00314, ERS013202_01691
666
Vibrio cholerae
469008
Escherichia coli BL21(DE3)
Omp8
Biological sequence
pBAD24
1
4.37
664711.67
72
VAPOR DIFFUSION, SITTING DROP
4.5
15% PEG 4000
0.1 M sodium acetate
0.4 M ammonium thiocyanate
298
citation
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Data collection
Database references
Data collection
Database references
Refinement description
1
0
2018-04-25
1
1
2018-05-09
1
2
2024-01-17
_citation.journal_volume
_citation.page_first
_citation.page_last
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
United Kingdom
Innovative Medicines Initiatives Joint Undertaking
115525
N
PDBE
Y
PDBE
2017-09-11
REL
REL
6EHD
PDB
experimental model
n
1
1
A
GLU
2
n
2
GLU
2
A
ILE
3
n
3
ILE
3
A
LEU
4
n
4
LEU
4
A
LYS
5
n
5
LYS
5
A
SER
6
n
6
SER
6
A
ASP
7
n
7
ASP
7
A
ALA
8
n
8
ALA
8
A
GLY
9
n
9
GLY
9
A
THR
10
n
10
THR
10
A
VAL
11
n
11
VAL
11
A
ASP
12
n
12
ASP
12
A
PHE
13
n
13
PHE
13
A
TYR
14
n
14
TYR
14
A
GLY
15
n
15
GLY
15
A
GLN
16
n
16
GLN
16
A
LEU
17
n
17
LEU
17
A
ARG
18
n
18
ARG
18
A
THR
19
n
19
THR
19
A
GLU
20
n
20
GLU
20
A
LEU
21
n
21
LEU
21
A
LYS
22
n
22
LYS
22
A
PHE
23
n
23
PHE
23
A
LEU
24
n
24
LEU
24
A
GLU
25
n
25
GLU
25
A
ASP
26
n
26
ASP
26
A
LYS
27
n
27
LYS
27
A
ASP
28
n
28
ASP
28
A
PRO
29
n
29
PRO
29
A
THR
30
n
30
THR
30
A
ILE
31
n
31
ILE
31
A
GLY
32
n
32
GLY
32
A
SER
33
n
33
SER
33
A
GLY
34
n
34
GLY
34
A
SER
35
n
35
SER
35
A
SER
36
n
36
SER
36
A
ARG
37
n
37
ARG
37
A
ALA
38
n
38
ALA
38
A
GLY
39
n
39
GLY
39
A
VAL
40
n
40
VAL
40
A
ASP
41
n
41
ASP
41
A
ALA
42
n
42
ALA
42
A
ASN
43
n
43
ASN
43
A
TYR
44
n
44
TYR
44
A
THR
45
n
45
THR
45
A
VAL
46
n
46
VAL
46
A
ASN
47
n
47
ASN
47
A
ASP
48
n
48
ASP
48
A
SER
49
n
49
SER
49
A
LEU
50
n
50
LEU
50
A
ALA
51
n
51
ALA
51
A
LEU
52
n
52
LEU
52
A
GLN
53
n
53
GLN
53
A
GLY
54
n
54
GLY
54
A
LYS
55
n
55
LYS
55
A
VAL
56
n
56
VAL
56
A
GLU
57
n
57
GLU
57
A
PHE
58
n
58
PHE
58
A
ALA
59
n
59
ALA
59
A
n
60
60
A
n
61
61
A
n
62
62
A
n
63
63
A
n
64
64
A
ASP
65
n
65
ASP
65
A
MET
66
n
66
MET
66
A
TYR
67
n
67
TYR
67
A
VAL
68
n
68
VAL
68
A
ARG
69
n
69
ARG
69
A
ASN
70
n
70
ASN
70
A
HIS
71
n
71
HIS
71
A
ILE
72
n
72
ILE
72
A
LEU
73
n
73
LEU
73
A
GLY
74
n
74
GLY
74
A
VAL
75
n
75
VAL
75
A
LYS
76
n
76
LYS
76
A
THR
77
n
77
THR
77
A
ASN
78
n
78
ASN
78
A
PHE
79
n
79
PHE
79
A
GLY
80
n
80
GLY
80
A
LYS
81
n
81
LYS
81
A
PHE
82
n
82
PHE
82
A
SER
83
n
83
SER
83
A
PHE
84
n
84
PHE
84
A
GLY
85
n
85
GLY
85
A
LYS
86
n
86
LYS
86
A
GLN
87
n
87
GLN
87
A
TRP
88
n
88
TRP
88
A
THR
89
n
89
THR
89
A
THR
90
n
90
THR
90
A
SER
91
n
91
SER
91
A
ASP
92
n
92
ASP
92
A
ASP
93
n
93
ASP
93
A
VAL
94
n
94
VAL
94
A
TYR
95
n
95
TYR
95
A
GLY
96
n
96
GLY
96
A
ALA
97
n
97
ALA
97
A
ASP
98
n
98
ASP
98
A
TYR
99
n
99
TYR
99
A
SER
100
n
100
SER
100
A
TYR
101
n
101
TYR
101
A
PHE
102
n
102
PHE
102
A
PHE
103
n
103
PHE
103
A
GLY
104
n
104
GLY
104
A
GLY
105
n
105
GLY
105
A
THR
106
n
106
THR
106
A
GLY
107
n
107
GLY
107
A
LEU
108
n
108
LEU
108
A
ARG
109
n
109
ARG
109
A
TYR
110
n
110
TYR
110
A
GLY
111
n
111
GLY
111
A
THR
112
n
112
THR
112
A
LEU
113
n
113
LEU
113
A
SER
114
n
114
SER
114
A
ASP
115
n
115
ASP
115
A
ALA
116
n
116
ALA
116
A
LEU
117
n
117
LEU
117
A
HIS
118
n
118
HIS
118
A
ASP
119
n
119
ASP
119
A
SER
120
n
120
SER
120
A
GLN
121
n
121
GLN
121
A
VAL
122
n
122
VAL
122
A
LYS
123
n
123
LYS
123
A
TYR
124
n
124
TYR
124
A
VAL
125
n
125
VAL
125
A
TYR
126
n
126
TYR
126
A
GLU
127
n
127
GLU
127
A
ALA
128
n
128
ALA
128
A
ASP
129
n
129
ASP
129
A
SER
130
n
130
SER
130
A
PHE
131
n
131
PHE
131
A
TRP
132
n
132
TRP
132
A
VAL
133
n
133
VAL
133
A
LYS
134
n
134
LYS
134
A
ALA
135
n
135
ALA
135
A
GLY
136
n
136
GLY
136
A
TYR
137
n
137
TYR
137
A
GLY
138
n
138
GLY
138
A
PHE
139
n
139
PHE
139
A
PRO
140
n
140
PRO
140
A
GLU
141
n
141
GLU
141
A
ASP
142
n
142
ASP
142
A
ASN
143
n
143
ASN
143
A
ALA
144
n
144
ALA
144
A
LYS
145
n
145
LYS
145
A
GLN
146
n
146
GLN
146
A
GLU
147
n
147
GLU
147
A
LEU
148
n
148
LEU
148
A
ALA
149
n
149
ALA
149
A
GLU
150
n
150
GLU
150
A
LEU
151
n
151
LEU
151
A
TYR
152
n
152
TYR
152
A
VAL
153
n
153
VAL
153
A
GLY
154
n
154
GLY
154
A
ALA
155
n
155
ALA
155
A
THR
156
n
156
THR
156
A
PHE
157
n
157
PHE
157
A
GLY
158
n
158
GLY
158
A
ASP
159
n
159
ASP
159
A
LEU
160
n
160
LEU
160
A
ALA
161
n
161
ALA
161
A
VAL
162
n
162
VAL
162
A
HIS
163
n
163
HIS
163
A
ALA
164
n
164
ALA
164
A
GLY
165
n
165
GLY
165
A
GLY
166
n
166
GLY
166
A
GLY
167
n
167
GLY
167
A
GLN
168
n
168
GLN
168
A
ASN
169
n
169
ASN
169
A
ARG
170
n
170
ARG
170
A
ASP
171
n
171
ASP
171
A
LYS
172
n
172
LYS
172
A
ALA
173
n
173
ALA
173
A
PHE
174
n
174
PHE
174
A
LYS
175
n
175
LYS
175
A
VAL
176
n
176
VAL
176
A
GLY
177
n
177
GLY
177
A
SER
178
n
178
SER
178
A
ASN
179
n
179
ASN
179
A
THR
180
n
180
THR
180
A
VAL
181
n
181
VAL
181
A
GLY
182
n
182
GLY
182
A
THR
183
n
183
THR
183
A
THR
184
n
184
THR
184
A
THR
185
n
185
THR
185
A
THR
186
n
186
THR
186
A
ASP
187
n
187
ASP
187
A
ILE
188
n
188
ILE
188
A
LYS
189
n
189
LYS
189
A
ALA
190
n
190
ALA
190
A
ASP
191
n
191
ASP
191
A
VAL
192
n
192
VAL
192
A
THR
193
n
193
THR
193
A
ASN
194
n
194
ASN
194
A
SER
195
n
195
SER
195
A
TYR
196
n
196
TYR
196
A
PHE
197
n
197
PHE
197
A
GLU
198
n
198
GLU
198
A
VAL
199
n
199
VAL
199
A
THR
200
n
200
THR
200
A
GLY
201
n
201
GLY
201
A
GLU
202
n
202
GLU
202
A
TYR
203
n
203
TYR
203
A
THR
204
n
204
THR
204
A
ILE
205
n
205
ILE
205
A
GLY
206
n
206
GLY
206
A
ASP
207
n
207
ASP
207
A
ALA
208
n
208
ALA
208
A
LEU
209
n
209
LEU
209
A
ILE
210
n
210
ILE
210
A
GLY
211
n
211
GLY
211
A
VAL
212
n
212
VAL
212
A
THR
213
n
213
THR
213
A
TYR
214
n
214
TYR
214
A
TYR
215
n
215
TYR
215
A
ASN
216
n
216
ASN
216
A
ALA
217
n
217
ALA
217
A
GLU
218
n
218
GLU
218
A
LEU
219
n
219
LEU
219
A
ASP
220
n
220
ASP
220
A
VAL
221
n
221
VAL
221
A
GLU
222
n
222
GLU
222
A
ASN
223
n
223
ASN
223
A
ASN
224
n
224
ASN
224
A
PRO
225
n
225
PRO
225
A
LEU
226
n
226
LEU
226
A
VAL
227
n
227
VAL
227
A
ILE
228
n
228
ILE
228
A
ASP
229
n
229
ASP
229
A
GLU
230
n
230
GLU
230
A
ASP
231
n
231
ASP
231
A
ALA
232
n
232
ALA
232
A
ILE
233
n
233
ILE
233
A
SER
234
n
234
SER
234
A
VAL
235
n
235
VAL
235
A
ALA
236
n
236
ALA
236
A
GLY
237
n
237
GLY
237
A
THR
238
n
238
THR
238
A
TYR
239
n
239
TYR
239
A
LYS
240
n
240
LYS
240
A
VAL
241
n
241
VAL
241
A
ALA
242
n
242
ALA
242
A
ASP
243
n
243
ASP
243
A
LYS
244
n
244
LYS
244
A
THR
245
n
245
THR
245
A
LYS
246
n
246
LYS
246
A
LEU
247
n
247
LEU
247
A
TYR
248
n
248
TYR
248
A
ALA
249
n
249
ALA
249
A
GLY
250
n
250
GLY
250
A
TYR
251
n
251
TYR
251
A
GLU
252
n
252
GLU
252
A
TYR
253
n
253
TYR
253
A
VAL
254
n
254
VAL
254
A
MET
255
n
255
MET
255
A
GLN
256
n
256
GLN
256
A
GLU
257
n
257
GLU
257
A
ALA
258
n
258
ALA
258
A
ASN
259
n
259
ASN
259
A
THR
260
n
260
THR
260
A
GLY
261
n
261
GLY
261
A
ALA
262
n
262
ALA
262
A
ASP
263
n
263
ASP
263
A
GLU
264
n
264
GLU
264
A
ASP
265
n
265
ASP
265
A
GLY
266
n
266
GLY
266
A
THR
267
n
267
THR
267
A
LEU
268
n
268
LEU
268
A
VAL
269
n
269
VAL
269
A
TYR
270
n
270
TYR
270
A
LEU
271
n
271
LEU
271
A
GLY
272
n
272
GLY
272
A
VAL
273
n
273
VAL
273
A
GLU
274
n
274
GLU
274
A
TYR
275
n
275
TYR
275
A
LYS
276
n
276
LYS
276
A
PHE
277
n
277
PHE
277
A
ALA
278
n
278
ALA
278
A
SER
279
n
279
SER
279
A
TRP
280
n
280
TRP
280
A
ALA
281
n
281
ALA
281
A
ARG
282
n
282
ARG
282
A
VAL
283
n
283
VAL
283
A
TYR
284
n
284
TYR
284
A
ALA
285
n
285
ALA
285
A
GLU
286
n
286
GLU
286
A
TYR
287
n
287
TYR
287
A
GLY
288
n
288
GLY
288
A
TYR
289
n
289
TYR
289
A
GLY
290
n
290
GLY
290
A
ASP
291
n
291
ASP
291
A
GLY
292
n
292
GLY
292
A
THR
293
n
293
THR
293
A
THR
294
n
294
THR
294
A
LEU
295
n
295
LEU
295
A
GLY
296
n
296
GLY
296
A
TYR
297
n
297
TYR
297
A
THR
298
n
298
THR
298
A
ASN
299
n
299
ASN
299
A
LYS
300
n
300
LYS
300
A
GLY
301
n
301
GLY
301
A
SER
302
n
302
SER
302
A
ASP
303
n
303
ASP
303
A
ALA
304
n
304
ALA
304
A
GLU
305
n
305
GLU
305
A
VAL
306
n
306
VAL
306
A
LYS
307
n
307
LYS
307
A
ALA
308
n
308
ALA
308
A
THR
309
n
309
THR
309
A
LYS
310
n
310
LYS
310
A
VAL
311
n
311
VAL
311
A
ASP
312
n
312
ASP
312
A
SER
313
n
313
SER
313
A
ALA
314
n
314
ALA
314
A
ASN
315
n
315
ASN
315
A
ASN
316
n
316
ASN
316
A
PHE
317
n
317
PHE
317
A
GLY
318
n
318
GLY
318
A
ILE
319
n
319
ILE
319
A
GLY
320
n
320
GLY
320
A
ALA
321
n
321
ALA
321
A
ARG
322
n
322
ARG
322
A
TYR
323
n
323
TYR
323
A
TYR
324
n
324
TYR
324
A
TRP
325
n
325
TRP
325
A
author_and_software_defined_assembly
PISA
1
monomeric
gel filtration
0
0
16100
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
44
A
N
TYR
44
A
O
LEU
52
A
O
LEU
52
A
N
GLN
53
A
N
GLN
53
A
O
GLY
74
A
O
GLY
74
A
N
VAL
75
A
N
VAL
75
A
O
PHE
82
A
O
PHE
82
A
N
GLY
85
A
N
GLY
85
A
O
GLN
121
A
O
GLN
121
A
N
TYR
124
A
N
TYR
124
A
O
ALA
135
A
O
ALA
135
A
N
GLY
136
A
N
GLY
136
A
O
GLU
150
A
O
GLU
150
A
N
VAL
153
A
N
VAL
153
A
O
ALA
164
A
O
ALA
164
A
N
GLY
165
A
N
GLY
165
A
O
GLU
198
A
O
GLU
198
A
N
TYR
203
A
N
TYR
203
A
O
ILE
210
A
O
ILE
210
A
N
TYR
215
A
N
TYR
215
A
O
ALA
232
A
O
ALA
232
A
N
VAL
235
A
N
VAL
235
A
O
TYR
251
A
O
TYR
251
A
N
GLN
256
A
N
GLN
256
A
O
GLU
264
A
O
GLU
264
A
N
VAL
269
A
N
VAL
269
A
O
TYR
289
A
O
TYR
289
A
N
GLU
286
A
N
GLU
286
A
O
GLY
318
A
O
GLY
318
A
O
ILE
319
A
O
ILE
319
A
N
LEU
21
A
N
LEU
21
A
N
TYR
14
A
N
TYR
14
A
O
GLY
39
A
O
GLY
39
A
N
VAL
40
A
N
VAL
40
A
O
VAL
56
A
O
VAL
56
A
N
TYR
297
A
N
TYR
297
A
O
VAL
306
A
O
VAL
306
1
A
ALA
1
A
ALA
1
1
Y
1
A
LEU
60
A
LEU
60
1
Y
1
A
LYS
61
A
LYS
61
1
Y
1
A
ASP
62
A
ASP
62
1
Y
1
A
SER
63
A
SER
63
1
Y
1
A
GLY
64
A
GLY
64
1
Y
1
A
LEU
4
-133.45
-99.94
1
A
ASP
7
-162.95
-67.91
1
A
SER
35
86.81
-16.37
1
A
TYR
44
-165.78
114.18
1
A
VAL
46
-119.49
-124.32
1
A
ASP
48
50.13
-126.51
1
A
LEU
50
-162.34
106.57
1
A
HIS
71
-147.42
44.17
1
A
PHE
79
-158.09
-57.99
1
A
TYR
95
46.28
-124.41
1
A
PHE
102
-140.09
-48.23
1
A
ASP
115
48.47
10.28
1
A
LEU
117
-151.23
78.01
1
A
SER
120
-101.74
46.57
1
A
ALA
128
158.79
149.99
1
A
ASP
129
64.92
-151.56
1
A
ASP
142
106.97
-36.28
1
A
ASN
143
79.35
-24.05
1
A
THR
184
-173.15
84.34
1
A
ALA
242
-123.11
-166.82
1
A
ASP
265
-160.17
-169.82
1
A
ASP
291
165.62
141.87
77.525
-2.57
-0.00
-1.21
-2.68
0.00
5.38
0.872
0.863
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.24435
0.21227
0.21381
3.20
46.41
323
6206
4.9
59.26
18.991
0.332
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.597
0.80
0.80
1.20
6EHD
3.20
46.41
0
2467
0
0
2467
0.011
0.020
2521
0.002
0.020
2190
1.528
1.936
3420
0.930
3.000
5071
8.927
5.000
317
38.718
24.960
125
19.983
15.000
380
7.914
15.000
7
0.080
0.200
364
0.005
0.020
2916
0.002
0.020
555
4.586
7.737
1274
4.587
7.738
1273
7.654
11.587
1589
7.651
11.586
1590
4.106
8.110
1247
4.106
8.110
1247
6.921
12.030
1831
11.335
88.953
2869
11.333
88.955
2870
1.129
0.298
3.281
2
93
20
11.52
3.2
46.41
5OYK
6356
1
0.9
5.0
3.6
98
3.2
1.5
0.5
1
3.5
96
refinement
REFMAC
5.8.0158
data reduction
XDS
data scaling
Aimless
phasing
PHASER
N
Outer-membrane expressed OmpT of Vibrio cholerae
1
N
N
A
THR
89
A
THR
89
HELX_P
A
TYR
95
A
TYR
95
1
AA1
7
MEMBRANE PROTEIN
Outer membrane protein, Porin, OmpF or OmpC ortholog, ion-transport, membrane beta barrel, ion-channel, membrane protein
O86021_VIBCL
UNP
1
20
O86021
AEILKSDAGTVDFYGQLRTELKFLEDKDPTIGSGSSRAGVDANYTVNDSLALQGKVEFALKDSGDMYVRNHILGVKTNFG
KFSFGKQWTTSDDVYGADYSYFFGGTGLRYGTLSDALHDSQVKYVYEADSFWVKAGYGFPEDNAKQELAELYVGATFGDL
AVHAGGGQNRDKAFKVGSNTVGTTTTDIKADVTNSYFEVTGEYTIGDALIGVTYYNAELDVENNPLVIDEDAISVAGTYK
VADKTKLYAGYEYVMQEANTGADEDGTLVYLGVEYKFASWARVYAEYGYGDGTTLGYTNKGSDAEVKATKVDSANNFGIG
ARIYW
20
344
5OYK
1
325
O86021
A
1
1
325
1
ILE
conflict
TYR
323
5OYK
A
O86021
UNP
342
323
18
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
44
A
TYR
44
A
THR
45
A
THR
45
A
ALA
51
A
ALA
51
A
GLN
53
A
GLN
53
A
LEU
73
A
LEU
73
A
LYS
76
A
LYS
76
A
LYS
81
A
LYS
81
A
TRP
88
A
TRP
88
A
LEU
117
A
LEU
117
A
TYR
126
A
TYR
126
A
TRP
132
A
TRP
132
A
GLY
138
A
GLY
138
A
GLU
147
A
GLU
147
A
PHE
157
A
PHE
157
A
LEU
160
A
LEU
160
A
THR
180
A
THR
180
A
THR
185
A
THR
185
A
ILE
205
A
ILE
205
A
ALA
208
A
ALA
208
A
LEU
219
A
LEU
219
A
ILE
228
A
ILE
228
A
TYR
239
A
TYR
239
A
LEU
247
A
LEU
247
A
ALA
258
A
ALA
258
A
ASP
263
A
ASP
263
A
VAL
273
A
VAL
273
A
ALA
281
A
ALA
281
A
THR
294
A
THR
294
A
THR
309
A
THR
309
A
TYR
324
A
TYR
324
A
VAL
11
A
VAL
11
A
PHE
23
A
PHE
23
A
ARG
37
A
ARG
37
A
ALA
42
A
ALA
42
A
VAL
56
A
VAL
56
A
PHE
58
A
PHE
58
A
TYR
297
A
TYR
297
A
ASN
299
A
ASN
299
A
ALA
304
A
ALA
304
A
VAL
306
A
VAL
306
5
C 1 2 1