0.010718 0.006188 0.000000 0.000000 0.012376 0.000000 0.000000 0.000000 0.020878 0.00000 0.00000 0.00000 Rudolph, M.G. Benz, J. Burger, D. Thoma, R. Ruf, A. Joseph, C. Kuhn, B. 0000-0001-6817-7476 Shao, C. Yang, H. 0000-0002-2487-9713 Burley, S.K. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.000 90.000 120.000 93.305 93.305 47.898 C24 H21 Br N6 O3 S2 585.496 5-bromo-1-{[4-(1H-tetrazol-5-yl)phenyl]methyl}-1'-(thiophene-2-sulfonyl)spiro[indole-3,4'-piperidin]-2(1H)-one non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking NE J. Comput. Aided Mol. Des. 1573-4951 32 1 20 10.1007/s10822-017-0088-4 29204945 D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies. 2018 0000-0001-6817-7476 0000-0002-2487-9713 10.2210/pdb5q1e/pdb pdb_00005q1e 100 1 CCD 2006-11-28 MARMOSAIC 225 mm CCD SINGLE WAVELENGTH M x-ray 1 1.0 1.0 X10SA SLS 1.0 SYNCHROTRON SLS BEAMLINE X10SA 27100.191 Bile acid receptor 1 man polymer 1790.026 COACTIVATOR PEPTIDE SRC-1 HD3 UNP residues 744-757 1 syn polymer 585.496 5-bromo-1-{[4-(1H-tetrazol-5-yl)phenyl]methyl}-1'-(thiophene-2-sulfonyl)spiro[indole-3,4'-piperidin]-2(1H)-one 1 syn non-polymer 18.015 water 173 nat water Farnesoid X-activated receptor,Farnesol receptor HRR-1,Nuclear receptor subfamily 1 group H member 4,Retinoid X receptor-interacting protein 14,RXR-interacting protein 14 no no GSHMELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEAFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIAL LKGSAVEAMFLRSAEIFNKKLPSGHSDLLEARIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIK DREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDVQ GSHMELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEAFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIAL LKGSAVEAMFLRSAEIFNKKLPSGHSDLLEARIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIK DREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDVQ A polypeptide(L) no no KDHQLLRYLLDKDE KDHQLLRYLLDKDE B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 233 NR1H4, BAR, FXR, HRR1, RIP14 9606 Homo sapiens 562 Escherichia coli PLASMID Biological sequence PET28A 1 2.12 42.06 evaporation, hanging drop 7.5 0.2M MgCl2, 0.1M HEPES pH 7.5, 25%PEG3350 298 audit_author citation_author citation citation_author citation pdbx_deposit_group audit_author citation citation_author database_2 pdbx_deposit_group chem_comp entity pdbx_entity_nonpoly repository Initial release Database references Structure summary Database references Database references Structure summary Database references Structure summary Database references Structure summary Derived calculations Non-polymer description Structure summary 1 0 2017-07-05 1 1 2017-07-19 1 2 2017-12-20 1 3 2018-01-31 1 4 2018-02-21 1 5 2021-02-10 1 6 2021-11-17 2 0 2023-05-31 _audit_author.name _citation_author.name _citation.journal_abbrev _citation.journal_id_CSD _citation.journal_id_ISSN _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _citation.journal_volume _citation.page_first _citation.page_last _citation.year _pdbx_deposit_group.group_type _audit_author.identifier_ORCID _citation.country _citation_author.identifier_ORCID _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_deposit_group.group_description _chem_comp.formula _chem_comp.formula_weight _chem_comp.name _entity.formula_weight _entity.pdbx_description _pdbx_entity_nonpoly.name RCSB Y RCSB 2017-05-31 REL REL Ligand binding to FARNESOID-X-RECEPTOR Ligand binding to FARNESOID-X-RECEPTOR undefined 9NG 5-bromo-1-{[4-(1H-tetrazol-5-yl)phenyl]methyl}-1'-(thiophene-2-sulfonyl)spiro[indole-3,4'-piperidin]-2(1H)-one HOH water 9606 Human Homo sapiens sample 1 14 9NG 501 3 9NG 9NG 501 A HOH 601 4 HOH HOH 601 A HOH 602 4 HOH HOH 602 A HOH 603 4 HOH HOH 603 A HOH 604 4 HOH HOH 604 A HOH 605 4 HOH HOH 605 A HOH 606 4 HOH HOH 606 A HOH 607 4 HOH HOH 607 A HOH 608 4 HOH HOH 608 A HOH 609 4 HOH HOH 609 A HOH 610 4 HOH HOH 610 A HOH 611 4 HOH HOH 611 A HOH 612 4 HOH HOH 612 A HOH 613 4 HOH HOH 613 A HOH 614 4 HOH HOH 614 A HOH 615 4 HOH HOH 615 A HOH 616 4 HOH HOH 616 A HOH 617 4 HOH HOH 617 A HOH 618 4 HOH HOH 618 A HOH 619 4 HOH HOH 619 A HOH 620 4 HOH HOH 620 A HOH 621 4 HOH HOH 621 A HOH 622 4 HOH HOH 622 A HOH 623 4 HOH HOH 623 A HOH 624 4 HOH HOH 624 A HOH 625 4 HOH HOH 625 A HOH 626 4 HOH HOH 626 A HOH 627 4 HOH HOH 627 A HOH 628 4 HOH HOH 628 A HOH 629 4 HOH HOH 629 A HOH 630 4 HOH HOH 630 A HOH 631 4 HOH HOH 631 A HOH 632 4 HOH HOH 632 A HOH 633 4 HOH HOH 633 A HOH 634 4 HOH HOH 634 A HOH 635 4 HOH HOH 635 A HOH 636 4 HOH HOH 636 A HOH 637 4 HOH HOH 637 A HOH 638 4 HOH HOH 638 A HOH 639 4 HOH HOH 639 A HOH 640 4 HOH HOH 640 A HOH 641 4 HOH HOH 641 A HOH 642 4 HOH HOH 642 A HOH 644 4 HOH HOH 643 A HOH 643 4 HOH HOH 644 A HOH 645 4 HOH HOH 645 A HOH 646 4 HOH HOH 646 A HOH 647 4 HOH HOH 647 A HOH 648 4 HOH HOH 648 A HOH 649 4 HOH HOH 649 A HOH 650 4 HOH HOH 650 A HOH 651 4 HOH HOH 651 A HOH 652 4 HOH HOH 652 A HOH 653 4 HOH HOH 653 A HOH 654 4 HOH HOH 654 A HOH 655 4 HOH HOH 655 A HOH 656 4 HOH HOH 656 A HOH 657 4 HOH HOH 657 A HOH 658 4 HOH HOH 658 A HOH 659 4 HOH HOH 659 A HOH 660 4 HOH HOH 660 A HOH 661 4 HOH HOH 661 A HOH 662 4 HOH HOH 662 A HOH 663 4 HOH HOH 663 A HOH 664 4 HOH HOH 664 A HOH 665 4 HOH HOH 665 A HOH 666 4 HOH HOH 666 A HOH 667 4 HOH HOH 667 A HOH 668 4 HOH HOH 668 A HOH 669 4 HOH HOH 669 A HOH 670 4 HOH HOH 670 A HOH 671 4 HOH HOH 671 A HOH 672 4 HOH HOH 672 A HOH 673 4 HOH HOH 673 A HOH 674 4 HOH HOH 674 A HOH 675 4 HOH HOH 675 A HOH 676 4 HOH HOH 676 A HOH 677 4 HOH HOH 677 A HOH 678 4 HOH HOH 678 A HOH 679 4 HOH HOH 679 A HOH 680 4 HOH HOH 680 A HOH 681 4 HOH HOH 681 A HOH 682 4 HOH HOH 682 A HOH 683 4 HOH HOH 683 A HOH 684 4 HOH HOH 684 A HOH 685 4 HOH HOH 685 A HOH 686 4 HOH HOH 686 A HOH 687 4 HOH HOH 687 A HOH 688 4 HOH HOH 688 A HOH 689 4 HOH HOH 689 A HOH 690 4 HOH HOH 690 A HOH 691 4 HOH HOH 691 A HOH 692 4 HOH HOH 692 A HOH 693 4 HOH HOH 693 A HOH 694 4 HOH HOH 694 A HOH 695 4 HOH HOH 695 A HOH 696 4 HOH HOH 696 A HOH 697 4 HOH HOH 697 A HOH 698 4 HOH HOH 698 A HOH 699 4 HOH HOH 699 A HOH 700 4 HOH HOH 700 A HOH 701 4 HOH HOH 701 A HOH 702 4 HOH HOH 702 A HOH 703 4 HOH HOH 703 A HOH 704 4 HOH HOH 704 A HOH 705 4 HOH HOH 705 A HOH 706 4 HOH HOH 706 A HOH 707 4 HOH HOH 707 A HOH 708 4 HOH HOH 708 A HOH 709 4 HOH HOH 709 A HOH 710 4 HOH HOH 710 A HOH 711 4 HOH HOH 711 A HOH 712 4 HOH HOH 712 A HOH 713 4 HOH HOH 713 A HOH 714 4 HOH HOH 714 A HOH 715 4 HOH HOH 715 A HOH 716 4 HOH HOH 716 A HOH 717 4 HOH HOH 717 A HOH 718 4 HOH HOH 718 A HOH 719 4 HOH HOH 719 A HOH 720 4 HOH HOH 720 A HOH 721 4 HOH HOH 721 A HOH 722 4 HOH HOH 722 A HOH 723 4 HOH HOH 723 A HOH 724 4 HOH HOH 724 A HOH 725 4 HOH HOH 725 A HOH 726 4 HOH HOH 726 A HOH 727 4 HOH HOH 727 A HOH 728 4 HOH HOH 728 A HOH 729 4 HOH HOH 729 A HOH 730 4 HOH HOH 730 A HOH 731 4 HOH HOH 731 A HOH 732 4 HOH HOH 732 A HOH 733 4 HOH HOH 733 A HOH 734 4 HOH HOH 734 A HOH 735 4 HOH HOH 735 A HOH 736 4 HOH HOH 736 A HOH 737 4 HOH HOH 737 A HOH 738 4 HOH HOH 738 A HOH 739 4 HOH HOH 739 A HOH 740 4 HOH HOH 740 A HOH 741 4 HOH HOH 741 A HOH 742 4 HOH HOH 742 A HOH 743 4 HOH HOH 743 A HOH 744 4 HOH HOH 744 A HOH 745 4 HOH HOH 745 A HOH 746 4 HOH HOH 746 A HOH 747 4 HOH HOH 747 A HOH 748 4 HOH HOH 748 A HOH 749 4 HOH HOH 749 A HOH 750 4 HOH HOH 750 A HOH 751 4 HOH HOH 751 A HOH 752 4 HOH HOH 752 A HOH 753 4 HOH HOH 753 A HOH 754 4 HOH HOH 754 A HOH 755 4 HOH HOH 755 A HOH 756 4 HOH HOH 756 A HOH 757 4 HOH HOH 757 A HOH 758 4 HOH HOH 758 A HOH 759 4 HOH HOH 759 A HOH 760 4 HOH HOH 760 A HOH 761 4 HOH HOH 761 A HOH 762 4 HOH HOH 762 A HOH 763 4 HOH HOH 763 A HOH 764 4 HOH HOH 764 A HOH 801 4 HOH HOH 801 B HOH 802 4 HOH HOH 802 B HOH 803 4 HOH HOH 803 B HOH 804 4 HOH HOH 804 B HOH 805 4 HOH HOH 805 B HOH 806 4 HOH HOH 806 B HOH 807 4 HOH HOH 807 B HOH 808 4 HOH HOH 808 B HOH 809 4 HOH HOH 809 B n 1 244 A n 2 245 A n 3 246 A MET 247 n 4 MET 247 A GLU 248 n 5 GLU 248 A LEU 249 n 6 LEU 249 A THR 250 n 7 THR 250 A PRO 251 n 8 PRO 251 A ASP 252 n 9 ASP 252 A GLN 253 n 10 GLN 253 A GLN 254 n 11 GLN 254 A THR 255 n 12 THR 255 A LEU 256 n 13 LEU 256 A LEU 257 n 14 LEU 257 A HIS 258 n 15 HIS 258 A PHE 259 n 16 PHE 259 A ILE 260 n 17 ILE 260 A MET 261 n 18 MET 261 A ASP 262 n 19 ASP 262 A SER 263 n 20 SER 263 A TYR 264 n 21 TYR 264 A ASN 265 n 22 ASN 265 A LYS 266 n 23 LYS 266 A GLN 267 n 24 GLN 267 A ARG 268 n 25 ARG 268 A MET 269 n 26 MET 269 A PRO 270 n 27 PRO 270 A GLN 271 n 28 GLN 271 A GLU 272 n 29 GLU 272 A ILE 273 n 30 ILE 273 A THR 274 n 31 THR 274 A ASN 275 n 32 ASN 275 A LYS 276 n 33 LYS 276 A ILE 277 n 34 ILE 277 A LEU 278 n 35 LEU 278 A LYS 279 n 36 LYS 279 A GLU 280 n 37 GLU 280 A ALA 281 n 38 ALA 281 A PHE 282 n 39 PHE 282 A SER 283 n 40 SER 283 A ALA 284 n 41 ALA 284 A GLU 285 n 42 GLU 285 A GLU 286 n 43 GLU 286 A ASN 287 n 44 ASN 287 A PHE 288 n 45 PHE 288 A LEU 289 n 46 LEU 289 A ILE 290 n 47 ILE 290 A LEU 291 n 48 LEU 291 A THR 292 n 49 THR 292 A GLU 293 n 50 GLU 293 A MET 294 n 51 MET 294 A ALA 295 n 52 ALA 295 A THR 296 n 53 THR 296 A ASN 297 n 54 ASN 297 A HIS 298 n 55 HIS 298 A VAL 299 n 56 VAL 299 A GLN 300 n 57 GLN 300 A VAL 301 n 58 VAL 301 A LEU 302 n 59 LEU 302 A VAL 303 n 60 VAL 303 A GLU 304 n 61 GLU 304 A PHE 305 n 62 PHE 305 A THR 306 n 63 THR 306 A LYS 307 n 64 LYS 307 A LYS 308 n 65 LYS 308 A LEU 309 n 66 LEU 309 A PRO 310 n 67 PRO 310 A GLY 311 n 68 GLY 311 A PHE 312 n 69 PHE 312 A GLN 313 n 70 GLN 313 A THR 314 n 71 THR 314 A LEU 315 n 72 LEU 315 A ASP 316 n 73 ASP 316 A HIS 317 n 74 HIS 317 A GLU 318 n 75 GLU 318 A ASP 319 n 76 ASP 319 A GLN 320 n 77 GLN 320 A ILE 321 n 78 ILE 321 A ALA 322 n 79 ALA 322 A LEU 323 n 80 LEU 323 A LEU 324 n 81 LEU 324 A LYS 325 n 82 LYS 325 A GLY 326 n 83 GLY 326 A SER 327 n 84 SER 327 A ALA 328 n 85 ALA 328 A VAL 329 n 86 VAL 329 A GLU 330 n 87 GLU 330 A ALA 331 n 88 ALA 331 A MET 332 n 89 MET 332 A PHE 333 n 90 PHE 333 A LEU 334 n 91 LEU 334 A ARG 335 n 92 ARG 335 A SER 336 n 93 SER 336 A ALA 337 n 94 ALA 337 A GLU 338 n 95 GLU 338 A ILE 339 n 96 ILE 339 A PHE 340 n 97 PHE 340 A ASN 341 n 98 ASN 341 A LYS 342 n 99 LYS 342 A LYS 343 n 100 LYS 343 A LEU 344 n 101 LEU 344 A PRO 345 n 102 PRO 345 A SER 346 n 103 SER 346 A GLY 347 n 104 GLY 347 A HIS 348 n 105 HIS 348 A SER 349 n 106 SER 349 A ASP 350 n 107 ASP 350 A LEU 351 n 108 LEU 351 A LEU 352 n 109 LEU 352 A GLU 353 n 110 GLU 353 A ALA 354 n 111 ALA 354 A ARG 355 n 112 ARG 355 A ILE 356 n 113 ILE 356 A ARG 357 n 114 ARG 357 A ASN 358 n 115 ASN 358 A SER 359 n 116 SER 359 A GLY 360 n 117 GLY 360 A ILE 361 n 118 ILE 361 A SER 362 n 119 SER 362 A ASP 363 n 120 ASP 363 A GLU 364 n 121 GLU 364 A TYR 365 n 122 TYR 365 A ILE 366 n 123 ILE 366 A THR 367 n 124 THR 367 A PRO 368 n 125 PRO 368 A MET 369 n 126 MET 369 A PHE 370 n 127 PHE 370 A SER 371 n 128 SER 371 A PHE 372 n 129 PHE 372 A TYR 373 n 130 TYR 373 A LYS 374 n 131 LYS 374 A SER 375 n 132 SER 375 A ILE 376 n 133 ILE 376 A GLY 377 n 134 GLY 377 A GLU 378 n 135 GLU 378 A LEU 379 n 136 LEU 379 A LYS 380 n 137 LYS 380 A MET 381 n 138 MET 381 A THR 382 n 139 THR 382 A GLN 383 n 140 GLN 383 A GLU 384 n 141 GLU 384 A GLU 385 n 142 GLU 385 A TYR 386 n 143 TYR 386 A ALA 387 n 144 ALA 387 A LEU 388 n 145 LEU 388 A LEU 389 n 146 LEU 389 A THR 390 n 147 THR 390 A ALA 391 n 148 ALA 391 A ILE 392 n 149 ILE 392 A VAL 393 n 150 VAL 393 A ILE 394 n 151 ILE 394 A LEU 395 n 152 LEU 395 A SER 396 n 153 SER 396 A PRO 397 n 154 PRO 397 A ASP 398 n 155 ASP 398 A ARG 399 n 156 ARG 399 A GLN 400 n 157 GLN 400 A TYR 401 n 158 TYR 401 A ILE 402 n 159 ILE 402 A LYS 403 n 160 LYS 403 A ASP 404 n 161 ASP 404 A ARG 405 n 162 ARG 405 A GLU 406 n 163 GLU 406 A ALA 407 n 164 ALA 407 A VAL 408 n 165 VAL 408 A GLU 409 n 166 GLU 409 A LYS 410 n 167 LYS 410 A LEU 411 n 168 LEU 411 A GLN 412 n 169 GLN 412 A GLU 413 n 170 GLU 413 A PRO 414 n 171 PRO 414 A LEU 415 n 172 LEU 415 A LEU 416 n 173 LEU 416 A ASP 417 n 174 ASP 417 A VAL 418 n 175 VAL 418 A LEU 419 n 176 LEU 419 A GLN 420 n 177 GLN 420 A LYS 421 n 178 LYS 421 A LEU 422 n 179 LEU 422 A CYS 423 n 180 CYS 423 A LYS 424 n 181 LYS 424 A ILE 425 n 182 ILE 425 A HIS 426 n 183 HIS 426 A GLN 427 n 184 GLN 427 A PRO 428 n 185 PRO 428 A GLU 429 n 186 GLU 429 A ASN 430 n 187 ASN 430 A PRO 431 n 188 PRO 431 A GLN 432 n 189 GLN 432 A HIS 433 n 190 HIS 433 A PHE 434 n 191 PHE 434 A ALA 435 n 192 ALA 435 A CYS 436 n 193 CYS 436 A LEU 437 n 194 LEU 437 A LEU 438 n 195 LEU 438 A GLY 439 n 196 GLY 439 A ARG 440 n 197 ARG 440 A LEU 441 n 198 LEU 441 A THR 442 n 199 THR 442 A GLU 443 n 200 GLU 443 A LEU 444 n 201 LEU 444 A ARG 445 n 202 ARG 445 A THR 446 n 203 THR 446 A PHE 447 n 204 PHE 447 A ASN 448 n 205 ASN 448 A HIS 449 n 206 HIS 449 A HIS 450 n 207 HIS 450 A HIS 451 n 208 HIS 451 A ALA 452 n 209 ALA 452 A GLU 453 n 210 GLU 453 A MET 454 n 211 MET 454 A LEU 455 n 212 LEU 455 A MET 456 n 213 MET 456 A SER 457 n 214 SER 457 A TRP 458 n 215 TRP 458 A ARG 459 n 216 ARG 459 A n 217 460 A n 218 461 A n 219 462 A n 220 463 A LYS 464 n 221 LYS 464 A PHE 465 n 222 PHE 465 A THR 466 n 223 THR 466 A PRO 467 n 224 PRO 467 A LEU 468 n 225 LEU 468 A LEU 469 n 226 LEU 469 A CYS 470 n 227 CYS 470 A GLU 471 n 228 GLU 471 A ILE 472 n 229 ILE 472 A TRP 473 n 230 TRP 473 A ASP 474 n 231 ASP 474 A n 232 475 A n 233 476 A n 1 744 B ASP 745 n 2 ASP 745 B HIS 746 n 3 HIS 746 B GLN 747 n 4 GLN 747 B LEU 748 n 5 LEU 748 B LEU 749 n 6 LEU 749 B ARG 750 n 7 ARG 750 B TYR 751 n 8 TYR 751 B LEU 752 n 9 LEU 752 B LEU 753 n 10 LEU 753 B ASP 754 n 11 ASP 754 B LYS 755 n 12 LYS 755 B n 13 756 B n 14 757 B 1.8287 0.1924 0.6372 0.8408 0.2222 1.0521 0.1127 -0.0216 -0.0301 0.0252 -0.0917 -0.0049 0.1042 0.0283 -0.0209 -0.0348 0.0154 0.0262 -0.0717 0.0136 -0.0533 refined 32.2781 10.8003 -0.3432 X-RAY DIFFRACTION 0.9754 0.0756 0.4816 0.3190 0.4961 0.8697 0.0055 -0.0514 0.0148 0.0466 -0.0339 0.0323 -0.0034 -0.0117 0.0284 -0.0648 -0.0675 0.0239 0.1310 -0.1199 -0.0603 refined 25.0013 21.2638 14.3422 X-RAY DIFFRACTION A 247 A 474 X-RAY DIFFRACTION 1 { A|* } B 745 B 755 X-RAY DIFFRACTION 2 { B|* } author_and_software_defined_assembly PISA 2 dimeric 1090 -8 11870 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A OG SER 346 A OG SER 103 1 Y 1 A CG ARG 459 A CG ARG 216 1 Y 1 A CD ARG 459 A CD ARG 216 1 Y 1 A NE ARG 459 A NE ARG 216 1 Y 1 A CZ ARG 459 A CZ ARG 216 1 Y 1 A NH1 ARG 459 A NH1 ARG 216 1 Y 1 A NH2 ARG 459 A NH2 ARG 216 1 Y 1 A GLY 244 A GLY 1 1 Y 1 A SER 245 A SER 2 1 Y 1 A HIS 246 A HIS 3 1 Y 1 A VAL 460 A VAL 217 1 Y 1 A ASN 461 A ASN 218 1 Y 1 A ASP 462 A ASP 219 1 Y 1 A HIS 463 A HIS 220 1 Y 1 A VAL 475 A VAL 232 1 Y 1 A GLN 476 A GLN 233 1 Y 1 B LYS 744 B LYS 1 1 Y 1 B ASP 756 B ASP 13 1 Y 1 B GLU 757 B GLU 14 1 Y 1 A LYS 342 -138.44 -43.89 1 A LEU 395 -88.11 43.54 132.600 36.1300 13.130 0.7406 0.0000 0.0000 0.7406 0.0000 -1.4811 0.9540 0.9370 0.2230 0.1880 0.1890 1.8500 33.4200 999 20195 4.9500 98.6000 0.1550 RANDOM 1 THROUGHOUT 0.000 MOLECULAR REPLACEMENT 0.1610 0.1390 0.1370 0.240 1.8500 33.4200 173 2133 55.33 43.73 36 0 1924 235 810 SINUSOIDAL 2.000 62 HARMONIC 2.000 314 HARMONIC 5.000 2125 HARMONIC 20.000 278 SEMIHARMONIC 5.000 2634 SEMIHARMONIC 4.000 0.009 2125 HARMONIC 2.000 0.960 2901 HARMONIC 2.000 2.220 18.680 0.2817 0.0000 0.2533 0.2546 1.9500 125 2677 2802 10 4.4600 94.7300 1.85 33.42 5Q1E 20195 1 98.6 1.85 1.94 1 refinement BUSTER 2.10.3 data scaling Zbyszek Otwinowski hkl@hkl-xray.com http://www.hkl-xray.com/ HKL-2000 package data extraction PDB deposit@deposit.rcsb.org Dec. 13, 2016 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.23 data reduction HKL-2000 Structures re-refined for D3R docking challenge Ligand binding to FARNESOID-X-RECEPTOR 1 N N 2 N N 3 N N 4 N N 4 N N A THR 250 A THR 7 HELX_P A ASN 265 A ASN 22 1 AA1 16 A PRO 270 A PRO 27 HELX_P A GLU 280 A GLU 37 1 AA2 11 A SER 283 A SER 40 HELX_P A LYS 308 A LYS 65 1 AA3 26 A GLY 311 A GLY 68 HELX_P A LEU 315 A LEU 72 5 AA4 5 A ASP 316 A ASP 73 HELX_P A LYS 342 A LYS 99 1 AA5 27 A PRO 345 A PRO 102 HELX_P A ASN 358 A ASN 115 1 AA6 14 A SER 362 A SER 119 HELX_P A LEU 379 A LEU 136 1 AA7 18 A THR 382 A THR 139 HELX_P A LEU 395 A LEU 152 1 AA8 14 A ASP 404 A ASP 161 HELX_P A GLN 427 A GLN 184 1 AA9 24 A GLN 432 A GLN 189 HELX_P A THR 446 A THR 203 1 AB1 15 A THR 446 A THR 203 HELX_P A SER 457 A SER 214 1 AB2 12 A THR 466 A THR 223 HELX_P A ASP 474 A ASP 231 1 AB3 9 B HIS 746 B HIS 3 HELX_P B LYS 755 B LYS 12 1 AB4 10 TRANSCRIPTION D3R, FXR, Docking, TRANSCRIPTION NR1H4_HUMAN UNP 1 258 Q96RI1 ELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGS AVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREA VEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDVQ A8K1V4_HUMAN UNP 2 744 A8K1V4 KDHQLLRYLLDKDE 258 486 5Q1E 248 476 Q96RI1 A 1 5 233 744 757 5Q1E 744 757 A8K1V4 B 2 1 14 1 expression tag GLY 244 5Q1E A Q96RI1 UNP 1 1 expression tag SER 245 5Q1E A Q96RI1 UNP 2 1 expression tag HIS 246 5Q1E A Q96RI1 UNP 3 1 expression tag MET 247 5Q1E A Q96RI1 UNP 4 1 GLU conflict ALA 281 5Q1E A Q96RI1 UNP 291 38 1 GLU conflict ALA 354 5Q1E A Q96RI1 UNP 364 111 binding site for residue 9NG A 501 A 9NG 501 Software 20 A GLN 267 A GLN 24 20 1_555 A ARG 268 A ARG 25 20 1_555 A MET 269 A MET 26 20 1_555 A PRO 270 A PRO 27 20 1_555 A LEU 291 A LEU 48 20 1_555 A THR 292 A THR 49 20 1_555 A MET 294 A MET 51 20 1_555 A ASN 297 A ASN 54 20 1_555 A HIS 298 A HIS 55 20 1_555 A VAL 301 A VAL 58 20 1_555 A MET 332 A MET 89 20 1_555 A SER 336 A SER 93 20 1_555 A ILE 339 A ILE 96 20 1_555 A PHE 340 A PHE 97 20 1_555 A LEU 352 A LEU 109 20 1_555 A ILE 356 A ILE 113 20 1_555 A HIS 451 A HIS 208 20 1_555 A TRP 473 A TRP 230 20 1_555 A HOH 697 D HOH 20 1_555 A HOH 711 D HOH 20 1_555 170 P 65