0.010718
0.006188
0.000000
0.000000
0.012376
0.000000
0.000000
0.000000
0.020878
0.00000
0.00000
0.00000
Rudolph, M.G.
Benz, J.
Burger, D.
Thoma, R.
Ruf, A.
Joseph, C.
Kuhn, B.
0000-0001-6817-7476
Shao, C.
Yang, H.
0000-0002-2487-9713
Burley, S.K.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
93.305
93.305
47.898
C24 H21 Br N6 O3 S2
585.496
5-bromo-1-{[4-(1H-tetrazol-5-yl)phenyl]methyl}-1'-(thiophene-2-sulfonyl)spiro[indole-3,4'-piperidin]-2(1H)-one
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
NE
J. Comput. Aided Mol. Des.
1573-4951
32
1
20
10.1007/s10822-017-0088-4
29204945
D3R Grand Challenge 2: blind prediction of protein-ligand poses, affinity rankings, and relative binding free energies.
2018
0000-0001-6817-7476
0000-0002-2487-9713
10.2210/pdb5q1e/pdb
pdb_00005q1e
100
1
CCD
2006-11-28
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
X10SA
SLS
1.0
SYNCHROTRON
SLS BEAMLINE X10SA
27100.191
Bile acid receptor
1
man
polymer
1790.026
COACTIVATOR PEPTIDE SRC-1 HD3
UNP residues 744-757
1
syn
polymer
585.496
5-bromo-1-{[4-(1H-tetrazol-5-yl)phenyl]methyl}-1'-(thiophene-2-sulfonyl)spiro[indole-3,4'-piperidin]-2(1H)-one
1
syn
non-polymer
18.015
water
173
nat
water
Farnesoid X-activated receptor,Farnesol receptor HRR-1,Nuclear receptor subfamily 1 group H member 4,Retinoid X receptor-interacting protein 14,RXR-interacting protein 14
no
no
GSHMELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEAFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIAL
LKGSAVEAMFLRSAEIFNKKLPSGHSDLLEARIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIK
DREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDVQ
GSHMELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEAFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIAL
LKGSAVEAMFLRSAEIFNKKLPSGHSDLLEARIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIK
DREAVEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDVQ
A
polypeptide(L)
no
no
KDHQLLRYLLDKDE
KDHQLLRYLLDKDE
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
233
NR1H4, BAR, FXR, HRR1, RIP14
9606
Homo sapiens
562
Escherichia coli
PLASMID
Biological sequence
PET28A
1
2.12
42.06
evaporation, hanging drop
7.5
0.2M MgCl2, 0.1M HEPES pH 7.5, 25%PEG3350
298
audit_author
citation_author
citation
citation_author
citation
pdbx_deposit_group
audit_author
citation
citation_author
database_2
pdbx_deposit_group
chem_comp
entity
pdbx_entity_nonpoly
repository
Initial release
Database references
Structure summary
Database references
Database references
Structure summary
Database references
Structure summary
Database references
Structure summary
Derived calculations
Non-polymer description
Structure summary
1
0
2017-07-05
1
1
2017-07-19
1
2
2017-12-20
1
3
2018-01-31
1
4
2018-02-21
1
5
2021-02-10
1
6
2021-11-17
2
0
2023-05-31
_audit_author.name
_citation_author.name
_citation.journal_abbrev
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.title
_citation.year
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.year
_pdbx_deposit_group.group_type
_audit_author.identifier_ORCID
_citation.country
_citation_author.identifier_ORCID
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_deposit_group.group_description
_chem_comp.formula
_chem_comp.formula_weight
_chem_comp.name
_entity.formula_weight
_entity.pdbx_description
_pdbx_entity_nonpoly.name
RCSB
Y
RCSB
2017-05-31
REL
REL
Ligand binding to FARNESOID-X-RECEPTOR
Ligand binding to FARNESOID-X-RECEPTOR
undefined
9NG
5-bromo-1-{[4-(1H-tetrazol-5-yl)phenyl]methyl}-1'-(thiophene-2-sulfonyl)spiro[indole-3,4'-piperidin]-2(1H)-one
HOH
water
9606
Human
Homo sapiens
sample
1
14
9NG
501
3
9NG
9NG
501
A
HOH
601
4
HOH
HOH
601
A
HOH
602
4
HOH
HOH
602
A
HOH
603
4
HOH
HOH
603
A
HOH
604
4
HOH
HOH
604
A
HOH
605
4
HOH
HOH
605
A
HOH
606
4
HOH
HOH
606
A
HOH
607
4
HOH
HOH
607
A
HOH
608
4
HOH
HOH
608
A
HOH
609
4
HOH
HOH
609
A
HOH
610
4
HOH
HOH
610
A
HOH
611
4
HOH
HOH
611
A
HOH
612
4
HOH
HOH
612
A
HOH
613
4
HOH
HOH
613
A
HOH
614
4
HOH
HOH
614
A
HOH
615
4
HOH
HOH
615
A
HOH
616
4
HOH
HOH
616
A
HOH
617
4
HOH
HOH
617
A
HOH
618
4
HOH
HOH
618
A
HOH
619
4
HOH
HOH
619
A
HOH
620
4
HOH
HOH
620
A
HOH
621
4
HOH
HOH
621
A
HOH
622
4
HOH
HOH
622
A
HOH
623
4
HOH
HOH
623
A
HOH
624
4
HOH
HOH
624
A
HOH
625
4
HOH
HOH
625
A
HOH
626
4
HOH
HOH
626
A
HOH
627
4
HOH
HOH
627
A
HOH
628
4
HOH
HOH
628
A
HOH
629
4
HOH
HOH
629
A
HOH
630
4
HOH
HOH
630
A
HOH
631
4
HOH
HOH
631
A
HOH
632
4
HOH
HOH
632
A
HOH
633
4
HOH
HOH
633
A
HOH
634
4
HOH
HOH
634
A
HOH
635
4
HOH
HOH
635
A
HOH
636
4
HOH
HOH
636
A
HOH
637
4
HOH
HOH
637
A
HOH
638
4
HOH
HOH
638
A
HOH
639
4
HOH
HOH
639
A
HOH
640
4
HOH
HOH
640
A
HOH
641
4
HOH
HOH
641
A
HOH
642
4
HOH
HOH
642
A
HOH
644
4
HOH
HOH
643
A
HOH
643
4
HOH
HOH
644
A
HOH
645
4
HOH
HOH
645
A
HOH
646
4
HOH
HOH
646
A
HOH
647
4
HOH
HOH
647
A
HOH
648
4
HOH
HOH
648
A
HOH
649
4
HOH
HOH
649
A
HOH
650
4
HOH
HOH
650
A
HOH
651
4
HOH
HOH
651
A
HOH
652
4
HOH
HOH
652
A
HOH
653
4
HOH
HOH
653
A
HOH
654
4
HOH
HOH
654
A
HOH
655
4
HOH
HOH
655
A
HOH
656
4
HOH
HOH
656
A
HOH
657
4
HOH
HOH
657
A
HOH
658
4
HOH
HOH
658
A
HOH
659
4
HOH
HOH
659
A
HOH
660
4
HOH
HOH
660
A
HOH
661
4
HOH
HOH
661
A
HOH
662
4
HOH
HOH
662
A
HOH
663
4
HOH
HOH
663
A
HOH
664
4
HOH
HOH
664
A
HOH
665
4
HOH
HOH
665
A
HOH
666
4
HOH
HOH
666
A
HOH
667
4
HOH
HOH
667
A
HOH
668
4
HOH
HOH
668
A
HOH
669
4
HOH
HOH
669
A
HOH
670
4
HOH
HOH
670
A
HOH
671
4
HOH
HOH
671
A
HOH
672
4
HOH
HOH
672
A
HOH
673
4
HOH
HOH
673
A
HOH
674
4
HOH
HOH
674
A
HOH
675
4
HOH
HOH
675
A
HOH
676
4
HOH
HOH
676
A
HOH
677
4
HOH
HOH
677
A
HOH
678
4
HOH
HOH
678
A
HOH
679
4
HOH
HOH
679
A
HOH
680
4
HOH
HOH
680
A
HOH
681
4
HOH
HOH
681
A
HOH
682
4
HOH
HOH
682
A
HOH
683
4
HOH
HOH
683
A
HOH
684
4
HOH
HOH
684
A
HOH
685
4
HOH
HOH
685
A
HOH
686
4
HOH
HOH
686
A
HOH
687
4
HOH
HOH
687
A
HOH
688
4
HOH
HOH
688
A
HOH
689
4
HOH
HOH
689
A
HOH
690
4
HOH
HOH
690
A
HOH
691
4
HOH
HOH
691
A
HOH
692
4
HOH
HOH
692
A
HOH
693
4
HOH
HOH
693
A
HOH
694
4
HOH
HOH
694
A
HOH
695
4
HOH
HOH
695
A
HOH
696
4
HOH
HOH
696
A
HOH
697
4
HOH
HOH
697
A
HOH
698
4
HOH
HOH
698
A
HOH
699
4
HOH
HOH
699
A
HOH
700
4
HOH
HOH
700
A
HOH
701
4
HOH
HOH
701
A
HOH
702
4
HOH
HOH
702
A
HOH
703
4
HOH
HOH
703
A
HOH
704
4
HOH
HOH
704
A
HOH
705
4
HOH
HOH
705
A
HOH
706
4
HOH
HOH
706
A
HOH
707
4
HOH
HOH
707
A
HOH
708
4
HOH
HOH
708
A
HOH
709
4
HOH
HOH
709
A
HOH
710
4
HOH
HOH
710
A
HOH
711
4
HOH
HOH
711
A
HOH
712
4
HOH
HOH
712
A
HOH
713
4
HOH
HOH
713
A
HOH
714
4
HOH
HOH
714
A
HOH
715
4
HOH
HOH
715
A
HOH
716
4
HOH
HOH
716
A
HOH
717
4
HOH
HOH
717
A
HOH
718
4
HOH
HOH
718
A
HOH
719
4
HOH
HOH
719
A
HOH
720
4
HOH
HOH
720
A
HOH
721
4
HOH
HOH
721
A
HOH
722
4
HOH
HOH
722
A
HOH
723
4
HOH
HOH
723
A
HOH
724
4
HOH
HOH
724
A
HOH
725
4
HOH
HOH
725
A
HOH
726
4
HOH
HOH
726
A
HOH
727
4
HOH
HOH
727
A
HOH
728
4
HOH
HOH
728
A
HOH
729
4
HOH
HOH
729
A
HOH
730
4
HOH
HOH
730
A
HOH
731
4
HOH
HOH
731
A
HOH
732
4
HOH
HOH
732
A
HOH
733
4
HOH
HOH
733
A
HOH
734
4
HOH
HOH
734
A
HOH
735
4
HOH
HOH
735
A
HOH
736
4
HOH
HOH
736
A
HOH
737
4
HOH
HOH
737
A
HOH
738
4
HOH
HOH
738
A
HOH
739
4
HOH
HOH
739
A
HOH
740
4
HOH
HOH
740
A
HOH
741
4
HOH
HOH
741
A
HOH
742
4
HOH
HOH
742
A
HOH
743
4
HOH
HOH
743
A
HOH
744
4
HOH
HOH
744
A
HOH
745
4
HOH
HOH
745
A
HOH
746
4
HOH
HOH
746
A
HOH
747
4
HOH
HOH
747
A
HOH
748
4
HOH
HOH
748
A
HOH
749
4
HOH
HOH
749
A
HOH
750
4
HOH
HOH
750
A
HOH
751
4
HOH
HOH
751
A
HOH
752
4
HOH
HOH
752
A
HOH
753
4
HOH
HOH
753
A
HOH
754
4
HOH
HOH
754
A
HOH
755
4
HOH
HOH
755
A
HOH
756
4
HOH
HOH
756
A
HOH
757
4
HOH
HOH
757
A
HOH
758
4
HOH
HOH
758
A
HOH
759
4
HOH
HOH
759
A
HOH
760
4
HOH
HOH
760
A
HOH
761
4
HOH
HOH
761
A
HOH
762
4
HOH
HOH
762
A
HOH
763
4
HOH
HOH
763
A
HOH
764
4
HOH
HOH
764
A
HOH
801
4
HOH
HOH
801
B
HOH
802
4
HOH
HOH
802
B
HOH
803
4
HOH
HOH
803
B
HOH
804
4
HOH
HOH
804
B
HOH
805
4
HOH
HOH
805
B
HOH
806
4
HOH
HOH
806
B
HOH
807
4
HOH
HOH
807
B
HOH
808
4
HOH
HOH
808
B
HOH
809
4
HOH
HOH
809
B
n
1
244
A
n
2
245
A
n
3
246
A
MET
247
n
4
MET
247
A
GLU
248
n
5
GLU
248
A
LEU
249
n
6
LEU
249
A
THR
250
n
7
THR
250
A
PRO
251
n
8
PRO
251
A
ASP
252
n
9
ASP
252
A
GLN
253
n
10
GLN
253
A
GLN
254
n
11
GLN
254
A
THR
255
n
12
THR
255
A
LEU
256
n
13
LEU
256
A
LEU
257
n
14
LEU
257
A
HIS
258
n
15
HIS
258
A
PHE
259
n
16
PHE
259
A
ILE
260
n
17
ILE
260
A
MET
261
n
18
MET
261
A
ASP
262
n
19
ASP
262
A
SER
263
n
20
SER
263
A
TYR
264
n
21
TYR
264
A
ASN
265
n
22
ASN
265
A
LYS
266
n
23
LYS
266
A
GLN
267
n
24
GLN
267
A
ARG
268
n
25
ARG
268
A
MET
269
n
26
MET
269
A
PRO
270
n
27
PRO
270
A
GLN
271
n
28
GLN
271
A
GLU
272
n
29
GLU
272
A
ILE
273
n
30
ILE
273
A
THR
274
n
31
THR
274
A
ASN
275
n
32
ASN
275
A
LYS
276
n
33
LYS
276
A
ILE
277
n
34
ILE
277
A
LEU
278
n
35
LEU
278
A
LYS
279
n
36
LYS
279
A
GLU
280
n
37
GLU
280
A
ALA
281
n
38
ALA
281
A
PHE
282
n
39
PHE
282
A
SER
283
n
40
SER
283
A
ALA
284
n
41
ALA
284
A
GLU
285
n
42
GLU
285
A
GLU
286
n
43
GLU
286
A
ASN
287
n
44
ASN
287
A
PHE
288
n
45
PHE
288
A
LEU
289
n
46
LEU
289
A
ILE
290
n
47
ILE
290
A
LEU
291
n
48
LEU
291
A
THR
292
n
49
THR
292
A
GLU
293
n
50
GLU
293
A
MET
294
n
51
MET
294
A
ALA
295
n
52
ALA
295
A
THR
296
n
53
THR
296
A
ASN
297
n
54
ASN
297
A
HIS
298
n
55
HIS
298
A
VAL
299
n
56
VAL
299
A
GLN
300
n
57
GLN
300
A
VAL
301
n
58
VAL
301
A
LEU
302
n
59
LEU
302
A
VAL
303
n
60
VAL
303
A
GLU
304
n
61
GLU
304
A
PHE
305
n
62
PHE
305
A
THR
306
n
63
THR
306
A
LYS
307
n
64
LYS
307
A
LYS
308
n
65
LYS
308
A
LEU
309
n
66
LEU
309
A
PRO
310
n
67
PRO
310
A
GLY
311
n
68
GLY
311
A
PHE
312
n
69
PHE
312
A
GLN
313
n
70
GLN
313
A
THR
314
n
71
THR
314
A
LEU
315
n
72
LEU
315
A
ASP
316
n
73
ASP
316
A
HIS
317
n
74
HIS
317
A
GLU
318
n
75
GLU
318
A
ASP
319
n
76
ASP
319
A
GLN
320
n
77
GLN
320
A
ILE
321
n
78
ILE
321
A
ALA
322
n
79
ALA
322
A
LEU
323
n
80
LEU
323
A
LEU
324
n
81
LEU
324
A
LYS
325
n
82
LYS
325
A
GLY
326
n
83
GLY
326
A
SER
327
n
84
SER
327
A
ALA
328
n
85
ALA
328
A
VAL
329
n
86
VAL
329
A
GLU
330
n
87
GLU
330
A
ALA
331
n
88
ALA
331
A
MET
332
n
89
MET
332
A
PHE
333
n
90
PHE
333
A
LEU
334
n
91
LEU
334
A
ARG
335
n
92
ARG
335
A
SER
336
n
93
SER
336
A
ALA
337
n
94
ALA
337
A
GLU
338
n
95
GLU
338
A
ILE
339
n
96
ILE
339
A
PHE
340
n
97
PHE
340
A
ASN
341
n
98
ASN
341
A
LYS
342
n
99
LYS
342
A
LYS
343
n
100
LYS
343
A
LEU
344
n
101
LEU
344
A
PRO
345
n
102
PRO
345
A
SER
346
n
103
SER
346
A
GLY
347
n
104
GLY
347
A
HIS
348
n
105
HIS
348
A
SER
349
n
106
SER
349
A
ASP
350
n
107
ASP
350
A
LEU
351
n
108
LEU
351
A
LEU
352
n
109
LEU
352
A
GLU
353
n
110
GLU
353
A
ALA
354
n
111
ALA
354
A
ARG
355
n
112
ARG
355
A
ILE
356
n
113
ILE
356
A
ARG
357
n
114
ARG
357
A
ASN
358
n
115
ASN
358
A
SER
359
n
116
SER
359
A
GLY
360
n
117
GLY
360
A
ILE
361
n
118
ILE
361
A
SER
362
n
119
SER
362
A
ASP
363
n
120
ASP
363
A
GLU
364
n
121
GLU
364
A
TYR
365
n
122
TYR
365
A
ILE
366
n
123
ILE
366
A
THR
367
n
124
THR
367
A
PRO
368
n
125
PRO
368
A
MET
369
n
126
MET
369
A
PHE
370
n
127
PHE
370
A
SER
371
n
128
SER
371
A
PHE
372
n
129
PHE
372
A
TYR
373
n
130
TYR
373
A
LYS
374
n
131
LYS
374
A
SER
375
n
132
SER
375
A
ILE
376
n
133
ILE
376
A
GLY
377
n
134
GLY
377
A
GLU
378
n
135
GLU
378
A
LEU
379
n
136
LEU
379
A
LYS
380
n
137
LYS
380
A
MET
381
n
138
MET
381
A
THR
382
n
139
THR
382
A
GLN
383
n
140
GLN
383
A
GLU
384
n
141
GLU
384
A
GLU
385
n
142
GLU
385
A
TYR
386
n
143
TYR
386
A
ALA
387
n
144
ALA
387
A
LEU
388
n
145
LEU
388
A
LEU
389
n
146
LEU
389
A
THR
390
n
147
THR
390
A
ALA
391
n
148
ALA
391
A
ILE
392
n
149
ILE
392
A
VAL
393
n
150
VAL
393
A
ILE
394
n
151
ILE
394
A
LEU
395
n
152
LEU
395
A
SER
396
n
153
SER
396
A
PRO
397
n
154
PRO
397
A
ASP
398
n
155
ASP
398
A
ARG
399
n
156
ARG
399
A
GLN
400
n
157
GLN
400
A
TYR
401
n
158
TYR
401
A
ILE
402
n
159
ILE
402
A
LYS
403
n
160
LYS
403
A
ASP
404
n
161
ASP
404
A
ARG
405
n
162
ARG
405
A
GLU
406
n
163
GLU
406
A
ALA
407
n
164
ALA
407
A
VAL
408
n
165
VAL
408
A
GLU
409
n
166
GLU
409
A
LYS
410
n
167
LYS
410
A
LEU
411
n
168
LEU
411
A
GLN
412
n
169
GLN
412
A
GLU
413
n
170
GLU
413
A
PRO
414
n
171
PRO
414
A
LEU
415
n
172
LEU
415
A
LEU
416
n
173
LEU
416
A
ASP
417
n
174
ASP
417
A
VAL
418
n
175
VAL
418
A
LEU
419
n
176
LEU
419
A
GLN
420
n
177
GLN
420
A
LYS
421
n
178
LYS
421
A
LEU
422
n
179
LEU
422
A
CYS
423
n
180
CYS
423
A
LYS
424
n
181
LYS
424
A
ILE
425
n
182
ILE
425
A
HIS
426
n
183
HIS
426
A
GLN
427
n
184
GLN
427
A
PRO
428
n
185
PRO
428
A
GLU
429
n
186
GLU
429
A
ASN
430
n
187
ASN
430
A
PRO
431
n
188
PRO
431
A
GLN
432
n
189
GLN
432
A
HIS
433
n
190
HIS
433
A
PHE
434
n
191
PHE
434
A
ALA
435
n
192
ALA
435
A
CYS
436
n
193
CYS
436
A
LEU
437
n
194
LEU
437
A
LEU
438
n
195
LEU
438
A
GLY
439
n
196
GLY
439
A
ARG
440
n
197
ARG
440
A
LEU
441
n
198
LEU
441
A
THR
442
n
199
THR
442
A
GLU
443
n
200
GLU
443
A
LEU
444
n
201
LEU
444
A
ARG
445
n
202
ARG
445
A
THR
446
n
203
THR
446
A
PHE
447
n
204
PHE
447
A
ASN
448
n
205
ASN
448
A
HIS
449
n
206
HIS
449
A
HIS
450
n
207
HIS
450
A
HIS
451
n
208
HIS
451
A
ALA
452
n
209
ALA
452
A
GLU
453
n
210
GLU
453
A
MET
454
n
211
MET
454
A
LEU
455
n
212
LEU
455
A
MET
456
n
213
MET
456
A
SER
457
n
214
SER
457
A
TRP
458
n
215
TRP
458
A
ARG
459
n
216
ARG
459
A
n
217
460
A
n
218
461
A
n
219
462
A
n
220
463
A
LYS
464
n
221
LYS
464
A
PHE
465
n
222
PHE
465
A
THR
466
n
223
THR
466
A
PRO
467
n
224
PRO
467
A
LEU
468
n
225
LEU
468
A
LEU
469
n
226
LEU
469
A
CYS
470
n
227
CYS
470
A
GLU
471
n
228
GLU
471
A
ILE
472
n
229
ILE
472
A
TRP
473
n
230
TRP
473
A
ASP
474
n
231
ASP
474
A
n
232
475
A
n
233
476
A
n
1
744
B
ASP
745
n
2
ASP
745
B
HIS
746
n
3
HIS
746
B
GLN
747
n
4
GLN
747
B
LEU
748
n
5
LEU
748
B
LEU
749
n
6
LEU
749
B
ARG
750
n
7
ARG
750
B
TYR
751
n
8
TYR
751
B
LEU
752
n
9
LEU
752
B
LEU
753
n
10
LEU
753
B
ASP
754
n
11
ASP
754
B
LYS
755
n
12
LYS
755
B
n
13
756
B
n
14
757
B
1.8287
0.1924
0.6372
0.8408
0.2222
1.0521
0.1127
-0.0216
-0.0301
0.0252
-0.0917
-0.0049
0.1042
0.0283
-0.0209
-0.0348
0.0154
0.0262
-0.0717
0.0136
-0.0533
refined
32.2781
10.8003
-0.3432
X-RAY DIFFRACTION
0.9754
0.0756
0.4816
0.3190
0.4961
0.8697
0.0055
-0.0514
0.0148
0.0466
-0.0339
0.0323
-0.0034
-0.0117
0.0284
-0.0648
-0.0675
0.0239
0.1310
-0.1199
-0.0603
refined
25.0013
21.2638
14.3422
X-RAY DIFFRACTION
A
247
A
474
X-RAY DIFFRACTION
1
{ A|* }
B
745
B
755
X-RAY DIFFRACTION
2
{ B|* }
author_and_software_defined_assembly
PISA
2
dimeric
1090
-8
11870
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
OG
SER
346
A
OG
SER
103
1
Y
1
A
CG
ARG
459
A
CG
ARG
216
1
Y
1
A
CD
ARG
459
A
CD
ARG
216
1
Y
1
A
NE
ARG
459
A
NE
ARG
216
1
Y
1
A
CZ
ARG
459
A
CZ
ARG
216
1
Y
1
A
NH1
ARG
459
A
NH1
ARG
216
1
Y
1
A
NH2
ARG
459
A
NH2
ARG
216
1
Y
1
A
GLY
244
A
GLY
1
1
Y
1
A
SER
245
A
SER
2
1
Y
1
A
HIS
246
A
HIS
3
1
Y
1
A
VAL
460
A
VAL
217
1
Y
1
A
ASN
461
A
ASN
218
1
Y
1
A
ASP
462
A
ASP
219
1
Y
1
A
HIS
463
A
HIS
220
1
Y
1
A
VAL
475
A
VAL
232
1
Y
1
A
GLN
476
A
GLN
233
1
Y
1
B
LYS
744
B
LYS
1
1
Y
1
B
ASP
756
B
ASP
13
1
Y
1
B
GLU
757
B
GLU
14
1
Y
1
A
LYS
342
-138.44
-43.89
1
A
LEU
395
-88.11
43.54
132.600
36.1300
13.130
0.7406
0.0000
0.0000
0.7406
0.0000
-1.4811
0.9540
0.9370
0.2230
0.1880
0.1890
1.8500
33.4200
999
20195
4.9500
98.6000
0.1550
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.1610
0.1390
0.1370
0.240
1.8500
33.4200
173
2133
55.33
43.73
36
0
1924
235
810
SINUSOIDAL
2.000
62
HARMONIC
2.000
314
HARMONIC
5.000
2125
HARMONIC
20.000
278
SEMIHARMONIC
5.000
2634
SEMIHARMONIC
4.000
0.009
2125
HARMONIC
2.000
0.960
2901
HARMONIC
2.000
2.220
18.680
0.2817
0.0000
0.2533
0.2546
1.9500
125
2677
2802
10
4.4600
94.7300
1.85
33.42
5Q1E
20195
1
98.6
1.85
1.94
1
refinement
BUSTER
2.10.3
data scaling
Zbyszek Otwinowski
hkl@hkl-xray.com
http://www.hkl-xray.com/
HKL-2000
package
data extraction
PDB
deposit@deposit.rcsb.org
Dec. 13, 2016
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.23
data reduction
HKL-2000
Structures re-refined for D3R docking challenge
Ligand binding to FARNESOID-X-RECEPTOR
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
A
THR
250
A
THR
7
HELX_P
A
ASN
265
A
ASN
22
1
AA1
16
A
PRO
270
A
PRO
27
HELX_P
A
GLU
280
A
GLU
37
1
AA2
11
A
SER
283
A
SER
40
HELX_P
A
LYS
308
A
LYS
65
1
AA3
26
A
GLY
311
A
GLY
68
HELX_P
A
LEU
315
A
LEU
72
5
AA4
5
A
ASP
316
A
ASP
73
HELX_P
A
LYS
342
A
LYS
99
1
AA5
27
A
PRO
345
A
PRO
102
HELX_P
A
ASN
358
A
ASN
115
1
AA6
14
A
SER
362
A
SER
119
HELX_P
A
LEU
379
A
LEU
136
1
AA7
18
A
THR
382
A
THR
139
HELX_P
A
LEU
395
A
LEU
152
1
AA8
14
A
ASP
404
A
ASP
161
HELX_P
A
GLN
427
A
GLN
184
1
AA9
24
A
GLN
432
A
GLN
189
HELX_P
A
THR
446
A
THR
203
1
AB1
15
A
THR
446
A
THR
203
HELX_P
A
SER
457
A
SER
214
1
AB2
12
A
THR
466
A
THR
223
HELX_P
A
ASP
474
A
ASP
231
1
AB3
9
B
HIS
746
B
HIS
3
HELX_P
B
LYS
755
B
LYS
12
1
AB4
10
TRANSCRIPTION
D3R, FXR, Docking, TRANSCRIPTION
NR1H4_HUMAN
UNP
1
258
Q96RI1
ELTPDQQTLLHFIMDSYNKQRMPQEITNKILKEEFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGS
AVEAMFLRSAEIFNKKLPSGHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALLTAIVILSPDRQYIKDREA
VEKLQEPLLDVLQKLCKIHQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDVQ
A8K1V4_HUMAN
UNP
2
744
A8K1V4
KDHQLLRYLLDKDE
258
486
5Q1E
248
476
Q96RI1
A
1
5
233
744
757
5Q1E
744
757
A8K1V4
B
2
1
14
1
expression tag
GLY
244
5Q1E
A
Q96RI1
UNP
1
1
expression tag
SER
245
5Q1E
A
Q96RI1
UNP
2
1
expression tag
HIS
246
5Q1E
A
Q96RI1
UNP
3
1
expression tag
MET
247
5Q1E
A
Q96RI1
UNP
4
1
GLU
conflict
ALA
281
5Q1E
A
Q96RI1
UNP
291
38
1
GLU
conflict
ALA
354
5Q1E
A
Q96RI1
UNP
364
111
binding site for residue 9NG A 501
A
9NG
501
Software
20
A
GLN
267
A
GLN
24
20
1_555
A
ARG
268
A
ARG
25
20
1_555
A
MET
269
A
MET
26
20
1_555
A
PRO
270
A
PRO
27
20
1_555
A
LEU
291
A
LEU
48
20
1_555
A
THR
292
A
THR
49
20
1_555
A
MET
294
A
MET
51
20
1_555
A
ASN
297
A
ASN
54
20
1_555
A
HIS
298
A
HIS
55
20
1_555
A
VAL
301
A
VAL
58
20
1_555
A
MET
332
A
MET
89
20
1_555
A
SER
336
A
SER
93
20
1_555
A
ILE
339
A
ILE
96
20
1_555
A
PHE
340
A
PHE
97
20
1_555
A
LEU
352
A
LEU
109
20
1_555
A
ILE
356
A
ILE
113
20
1_555
A
HIS
451
A
HIS
208
20
1_555
A
TRP
473
A
TRP
230
20
1_555
A
HOH
697
D
HOH
20
1_555
A
HOH
711
D
HOH
20
1_555
170
P 65