0.011110 0.006414 0.000000 0.000000 0.012828 0.000000 0.000000 0.000000 0.009371 0.000000 0.000000 0.000000 Keedy, D.A. Hill, Z.B. Biel, J.T. Kang, E. Rettenmaier, T.J. Brandao-Neto, J. von Delft, F. Wells, J.A. Fraser, J.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.000 90.000 120.000 90.011 90.011 106.714 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C11 H15 N O2 193.242 2-methoxy-N-[(1R)-1-phenylethyl]acetamide non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C4 H12 N O3 1 122.143 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL TRIS BUFFER non-polymer C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Elife 2050-084X 7 10.7554/eLife.36307 29877794 An expanded allosteric network in PTP1B by multitemperature crystallography, fragment screening, and covalent tethering. 2018 0000-0002-9184-7586 0000-0002-0935-8362 0000-0001-6015-320X 0000-0002-6693-8603 0000-0003-0378-0017 0000-0001-8267-5519 0000-0002-5080-2859 Several residues are not properly linked with short C-N bond distance for certain conformers. 100 1 PIXEL 2016-09-25 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 0.92819 1.0 I04-1 Diamond 0.92819 SYNCHROTRON DIAMOND BEAMLINE I04-1 37345.562 Tyrosine-protein phosphatase non-receptor type 1 3.1.3.48 catalytic domain C32S, C92V 1 man polymer 193.242 2-methoxy-N-[(1R)-1-phenylethyl]acetamide 1 syn non-polymer 122.143 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 1 syn non-polymer 18.015 water 153 nat water Protein-tyrosine phosphatase 1B,PTP-1B no no MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPSRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDNDYINASLIKMEEAQRS YILTQGPLPNTVGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLEL ENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD PSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHEDLEPPPEHIPPPPRPPKRILEPH N MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPSRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDNDYINASLIKMEEAQRS YILTQGPLPNTVGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLEL ENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD PSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHEDLEPPPEHIPPPPRPPKRILEPH N A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 321 PTPN1, PTP1B 9606 Homo sapiens 469008 Escherichia coli BL21(DE3) plasmid Biological sequence pET24b 1 3.34 63.19 VAPOR DIFFUSION 7.5 well solution: 0.3 M magnesium acetate, 0.1 M HEPES pH 7.5, 0.1% beta-mercaptoethanol, 13-14% PEG 8000, 2% ethanol 277 citation citation_author entity repository Initial release Data collection Database references Structure summary 1 0 2018-10-10 1 1 2019-02-06 _citation.country _citation.journal_abbrev _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _entity.formula_weight RCSB Y RCSB 2018-08-30 REL REL PTP1B screened against fragment libraries by X-ray crystallography at the XChem facility of Diamond Light Source beamline I04-1 PanDDA analysis group deposition of models with modelled events (e.g. bound ligands) changed state JGJ 2-methoxy-N-[(1R)-1-phenylethyl]acetamide TRS 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL HOH water LIG 1 2 JGJ JGJ 401 A TRS 500 3 TRS TRS 402 A HOH 104 4 HOH HOH 501 A HOH 149 4 HOH HOH 502 A HOH 37 4 HOH HOH 503 A HOH 20 4 HOH HOH 504 A HOH 99 4 HOH HOH 505 A HOH 73 4 HOH HOH 506 A HOH 30 4 HOH HOH 507 A HOH 7 4 HOH HOH 508 A HOH 100 4 HOH HOH 509 A HOH 61 4 HOH HOH 510 A HOH 52 4 HOH HOH 511 A HOH 79 4 HOH HOH 512 A HOH 119 4 HOH HOH 513 A HOH 12 4 HOH HOH 514 A HOH 91 4 HOH HOH 515 A HOH 107 4 HOH HOH 516 A HOH 54 4 HOH HOH 517 A HOH 108 4 HOH HOH 518 A HOH 43 4 HOH HOH 519 A HOH 44 4 HOH HOH 520 A HOH 14 4 HOH HOH 521 A HOH 24 4 HOH HOH 522 A HOH 128 4 HOH HOH 523 A HOH 4 4 HOH HOH 524 A HOH 71 4 HOH HOH 525 A HOH 18 4 HOH HOH 526 A HOH 25 4 HOH HOH 527 A HOH 85 4 HOH HOH 528 A HOH 48 4 HOH HOH 529 A HOH 49 4 HOH HOH 530 A HOH 26 4 HOH HOH 531 A HOH 82 4 HOH HOH 532 A HOH 3 4 HOH HOH 533 A HOH 40 4 HOH HOH 534 A HOH 93 4 HOH HOH 535 A HOH 2 4 HOH HOH 536 A HOH 98 4 HOH HOH 537 A HOH 39 4 HOH HOH 538 A HOH 77 4 HOH HOH 539 A HOH 92 4 HOH HOH 540 A HOH 50 4 HOH HOH 541 A HOH 66 4 HOH HOH 542 A HOH 133 4 HOH HOH 543 A HOH 15 4 HOH HOH 544 A HOH 55 4 HOH HOH 545 A HOH 88 4 HOH HOH 546 A HOH 63 4 HOH HOH 547 A HOH 10 4 HOH HOH 548 A HOH 59 4 HOH HOH 549 A HOH 53 4 HOH HOH 550 A HOH 31 4 HOH HOH 551 A HOH 70 4 HOH HOH 552 A HOH 5 4 HOH HOH 553 A HOH 69 4 HOH HOH 554 A HOH 13 4 HOH HOH 555 A HOH 80 4 HOH HOH 556 A HOH 86 4 HOH HOH 557 A HOH 134 4 HOH HOH 558 A HOH 6 4 HOH HOH 559 A HOH 32 4 HOH HOH 560 A HOH 23 4 HOH HOH 561 A HOH 121 4 HOH HOH 562 A HOH 106 4 HOH HOH 563 A HOH 11 4 HOH HOH 564 A HOH 38 4 HOH HOH 565 A HOH 84 4 HOH HOH 566 A HOH 8 4 HOH HOH 567 A HOH 1 4 HOH HOH 568 A HOH 97 4 HOH HOH 569 A HOH 75 4 HOH HOH 570 A HOH 16 4 HOH HOH 571 A HOH 27 4 HOH HOH 572 A HOH 35 4 HOH HOH 573 A HOH 111 4 HOH HOH 574 A HOH 57 4 HOH HOH 575 A HOH 83 4 HOH HOH 576 A HOH 76 4 HOH HOH 577 A HOH 129 4 HOH HOH 578 A HOH 56 4 HOH HOH 579 A HOH 17 4 HOH HOH 580 A HOH 87 4 HOH HOH 581 A HOH 9 4 HOH HOH 582 A HOH 148 4 HOH HOH 583 A HOH 46 4 HOH HOH 584 A HOH 120 4 HOH HOH 585 A HOH 45 4 HOH HOH 586 A HOH 36 4 HOH HOH 587 A HOH 33 4 HOH HOH 588 A HOH 21 4 HOH HOH 589 A HOH 136 4 HOH HOH 590 A HOH 67 4 HOH HOH 591 A HOH 127 4 HOH HOH 592 A HOH 41 4 HOH HOH 593 A HOH 95 4 HOH HOH 594 A HOH 130 4 HOH HOH 595 A HOH 22 4 HOH HOH 596 A HOH 103 4 HOH HOH 597 A HOH 126 4 HOH HOH 598 A HOH 72 4 HOH HOH 599 A HOH 152 4 HOH HOH 600 A HOH 51 4 HOH HOH 601 A HOH 94 4 HOH HOH 602 A HOH 141 4 HOH HOH 603 A HOH 125 4 HOH HOH 604 A HOH 19 4 HOH HOH 605 A HOH 135 4 HOH HOH 606 A HOH 150 4 HOH HOH 607 A HOH 47 4 HOH HOH 608 A HOH 122 4 HOH HOH 609 A HOH 114 4 HOH HOH 610 A HOH 96 4 HOH HOH 611 A HOH 90 4 HOH HOH 612 A HOH 29 4 HOH HOH 613 A HOH 123 4 HOH HOH 614 A HOH 81 4 HOH HOH 615 A HOH 78 4 HOH HOH 616 A HOH 42 4 HOH HOH 617 A HOH 34 4 HOH HOH 618 A HOH 146 4 HOH HOH 619 A HOH 68 4 HOH HOH 620 A HOH 110 4 HOH HOH 621 A HOH 147 4 HOH HOH 622 A HOH 89 4 HOH HOH 623 A HOH 138 4 HOH HOH 624 A HOH 65 4 HOH HOH 625 A HOH 151 4 HOH HOH 626 A HOH 28 4 HOH HOH 627 A HOH 117 4 HOH HOH 628 A HOH 60 4 HOH HOH 629 A HOH 115 4 HOH HOH 630 A HOH 112 4 HOH HOH 631 A HOH 101 4 HOH HOH 632 A HOH 153 4 HOH HOH 633 A HOH 145 4 HOH HOH 634 A HOH 144 4 HOH HOH 635 A HOH 142 4 HOH HOH 636 A HOH 143 4 HOH HOH 637 A HOH 132 4 HOH HOH 638 A HOH 113 4 HOH HOH 639 A HOH 109 4 HOH HOH 640 A HOH 139 4 HOH HOH 641 A HOH 137 4 HOH HOH 642 A HOH 131 4 HOH HOH 643 A HOH 140 4 HOH HOH 644 A HOH 116 4 HOH HOH 645 A HOH 62 4 HOH HOH 646 A HOH 124 4 HOH HOH 647 A HOH 64 4 HOH HOH 648 A HOH 118 4 HOH HOH 649 A HOH 102 4 HOH HOH 650 A HOH 105 4 HOH HOH 651 A HOH 58 4 HOH HOH 652 A HOH 74 4 HOH HOH 653 A MET 1 n 1 MET 1 A GLU 2 n 2 GLU 2 A MET 3 n 3 MET 3 A GLU 4 n 4 GLU 4 A LYS 5 n 5 LYS 5 A GLU 6 n 6 GLU 6 A PHE 7 n 7 PHE 7 A GLU 8 n 8 GLU 8 A GLN 9 n 9 GLN 9 A ILE 10 n 10 ILE 10 A ASP 11 n 11 ASP 11 A LYS 12 n 12 LYS 12 A SER 13 n 13 SER 13 A GLY 14 n 14 GLY 14 A SER 15 n 15 SER 15 A TRP 16 n 16 TRP 16 A ALA 17 n 17 ALA 17 A ALA 18 n 18 ALA 18 A ILE 19 n 19 ILE 19 A TYR 20 n 20 TYR 20 A GLN 21 n 21 GLN 21 A ASP 22 n 22 ASP 22 A ILE 23 n 23 ILE 23 A ARG 24 n 24 ARG 24 A HIS 25 n 25 HIS 25 A GLU 26 n 26 GLU 26 A ALA 27 n 27 ALA 27 A SER 28 n 28 SER 28 A ASP 29 n 29 ASP 29 A PHE 30 n 30 PHE 30 A PRO 31 n 31 PRO 31 A SER 32 n 32 SER 32 A ARG 33 n 33 ARG 33 A VAL 34 n 34 VAL 34 A ALA 35 n 35 ALA 35 A LYS 36 n 36 LYS 36 A LEU 37 n 37 LEU 37 A PRO 38 n 38 PRO 38 A LYS 39 n 39 LYS 39 A ASN 40 n 40 ASN 40 A LYS 41 n 41 LYS 41 A ASN 42 n 42 ASN 42 A ARG 43 n 43 ARG 43 A ASN 44 n 44 ASN 44 A ARG 45 n 45 ARG 45 A TYR 46 n 46 TYR 46 A ARG 47 n 47 ARG 47 A ASP 48 n 48 ASP 48 A VAL 49 n 49 VAL 49 A SER 50 n 50 SER 50 A PRO 51 n 51 PRO 51 A PHE 52 n 52 PHE 52 A ASP 53 n 53 ASP 53 A HIS 54 n 54 HIS 54 A SER 55 n 55 SER 55 A ARG 56 n 56 ARG 56 A ILE 57 n 57 ILE 57 A LYS 58 n 58 LYS 58 A LEU 59 n 59 LEU 59 A HIS 60 n 60 HIS 60 A GLN 61 n 61 GLN 61 A GLU 62 n 62 GLU 62 A ASP 63 n 63 ASP 63 A ASN 64 n 64 ASN 64 A ASP 65 n 65 ASP 65 A TYR 66 n 66 TYR 66 A ILE 67 n 67 ILE 67 A ASN 68 n 68 ASN 68 A ALA 69 n 69 ALA 69 A SER 70 n 70 SER 70 A LEU 71 n 71 LEU 71 A ILE 72 n 72 ILE 72 A LYS 73 n 73 LYS 73 A MET 74 n 74 MET 74 A GLU 75 n 75 GLU 75 A GLU 76 n 76 GLU 76 A ALA 77 n 77 ALA 77 A GLN 78 n 78 GLN 78 A ARG 79 n 79 ARG 79 A SER 80 n 80 SER 80 A TYR 81 n 81 TYR 81 A ILE 82 n 82 ILE 82 A LEU 83 n 83 LEU 83 A THR 84 n 84 THR 84 A GLN 85 n 85 GLN 85 A GLY 86 n 86 GLY 86 A PRO 87 n 87 PRO 87 A LEU 88 n 88 LEU 88 A PRO 89 n 89 PRO 89 A ASN 90 n 90 ASN 90 A THR 91 n 91 THR 91 A VAL 92 n 92 VAL 92 A GLY 93 n 93 GLY 93 A HIS 94 n 94 HIS 94 A PHE 95 n 95 PHE 95 A TRP 96 n 96 TRP 96 A GLU 97 n 97 GLU 97 A MET 98 n 98 MET 98 A VAL 99 n 99 VAL 99 A TRP 100 n 100 TRP 100 A GLU 101 n 101 GLU 101 A GLN 102 n 102 GLN 102 A LYS 103 n 103 LYS 103 A SER 104 n 104 SER 104 A ARG 105 n 105 ARG 105 A GLY 106 n 106 GLY 106 A VAL 107 n 107 VAL 107 A VAL 108 n 108 VAL 108 A MET 109 n 109 MET 109 A LEU 110 n 110 LEU 110 A ASN 111 n 111 ASN 111 A ARG 112 n 112 ARG 112 A VAL 113 n 113 VAL 113 A MET 114 n 114 MET 114 A GLU 115 n 115 GLU 115 A LYS 116 n 116 LYS 116 A GLY 117 n 117 GLY 117 A SER 118 n 118 SER 118 A LEU 119 n 119 LEU 119 A LYS 120 n 120 LYS 120 A CYS 121 n 121 CYS 121 A ALA 122 n 122 ALA 122 A GLN 123 n 123 GLN 123 A TYR 124 n 124 TYR 124 A TRP 125 n 125 TRP 125 A PRO 126 n 126 PRO 126 A GLN 127 n 127 GLN 127 A LYS 128 n 128 LYS 128 A GLU 129 n 129 GLU 129 A GLU 130 n 130 GLU 130 A LYS 131 n 131 LYS 131 A GLU 132 n 132 GLU 132 A MET 133 n 133 MET 133 A ILE 134 n 134 ILE 134 A PHE 135 n 135 PHE 135 A GLU 136 n 136 GLU 136 A ASP 137 n 137 ASP 137 A THR 138 n 138 THR 138 A ASN 139 n 139 ASN 139 A LEU 140 n 140 LEU 140 A LYS 141 n 141 LYS 141 A LEU 142 n 142 LEU 142 A THR 143 n 143 THR 143 A LEU 144 n 144 LEU 144 A ILE 145 n 145 ILE 145 A SER 146 n 146 SER 146 A GLU 147 n 147 GLU 147 A ASP 148 n 148 ASP 148 A ILE 149 n 149 ILE 149 A LYS 150 n 150 LYS 150 A SER 151 n 151 SER 151 A TYR 152 n 152 TYR 152 A TYR 153 n 153 TYR 153 A THR 154 n 154 THR 154 A VAL 155 n 155 VAL 155 A ARG 156 n 156 ARG 156 A GLN 157 n 157 GLN 157 A LEU 158 n 158 LEU 158 A GLU 159 n 159 GLU 159 A LEU 160 n 160 LEU 160 A GLU 161 n 161 GLU 161 A ASN 162 n 162 ASN 162 A LEU 163 n 163 LEU 163 A THR 164 n 164 THR 164 A THR 165 n 165 THR 165 A GLN 166 n 166 GLN 166 A GLU 167 n 167 GLU 167 A THR 168 n 168 THR 168 A ARG 169 n 169 ARG 169 A GLU 170 n 170 GLU 170 A ILE 171 n 171 ILE 171 A LEU 172 n 172 LEU 172 A HIS 173 n 173 HIS 173 A PHE 174 n 174 PHE 174 A HIS 175 n 175 HIS 175 A TYR 176 n 176 TYR 176 A THR 177 n 177 THR 177 A THR 178 n 178 THR 178 A TRP 179 n 179 TRP 179 A PRO 180 n 180 PRO 180 A ASP 181 n 181 ASP 181 A PHE 182 n 182 PHE 182 A GLY 183 n 183 GLY 183 A VAL 184 n 184 VAL 184 A PRO 185 n 185 PRO 185 A GLU 186 n 186 GLU 186 A SER 187 n 187 SER 187 A PRO 188 n 188 PRO 188 A ALA 189 n 189 ALA 189 A SER 190 n 190 SER 190 A PHE 191 n 191 PHE 191 A LEU 192 n 192 LEU 192 A ASN 193 n 193 ASN 193 A PHE 194 n 194 PHE 194 A LEU 195 n 195 LEU 195 A PHE 196 n 196 PHE 196 A LYS 197 n 197 LYS 197 A VAL 198 n 198 VAL 198 A ARG 199 n 199 ARG 199 A GLU 200 n 200 GLU 200 A SER 201 n 201 SER 201 A GLY 202 n 202 GLY 202 A SER 203 n 203 SER 203 A LEU 204 n 204 LEU 204 A SER 205 n 205 SER 205 A PRO 206 n 206 PRO 206 A GLU 207 n 207 GLU 207 A HIS 208 n 208 HIS 208 A GLY 209 n 209 GLY 209 A PRO 210 n 210 PRO 210 A VAL 211 n 211 VAL 211 A VAL 212 n 212 VAL 212 A VAL 213 n 213 VAL 213 A HIS 214 n 214 HIS 214 A CYS 215 n 215 CYS 215 A SER 216 n 216 SER 216 A ALA 217 n 217 ALA 217 A GLY 218 n 218 GLY 218 A ILE 219 n 219 ILE 219 A GLY 220 n 220 GLY 220 A ARG 221 n 221 ARG 221 A SER 222 n 222 SER 222 A GLY 223 n 223 GLY 223 A THR 224 n 224 THR 224 A PHE 225 n 225 PHE 225 A CYS 226 n 226 CYS 226 A LEU 227 n 227 LEU 227 A ALA 228 n 228 ALA 228 A ASP 229 n 229 ASP 229 A THR 230 n 230 THR 230 A CYS 231 n 231 CYS 231 A LEU 232 n 232 LEU 232 A LEU 233 n 233 LEU 233 A LEU 234 n 234 LEU 234 A MET 235 n 235 MET 235 A ASP 236 n 236 ASP 236 A LYS 237 n 237 LYS 237 A ARG 238 n 238 ARG 238 A LYS 239 n 239 LYS 239 A ASP 240 n 240 ASP 240 A PRO 241 n 241 PRO 241 A SER 242 n 242 SER 242 A SER 243 n 243 SER 243 A VAL 244 n 244 VAL 244 A ASP 245 n 245 ASP 245 A ILE 246 n 246 ILE 246 A LYS 247 n 247 LYS 247 A LYS 248 n 248 LYS 248 A VAL 249 n 249 VAL 249 A LEU 250 n 250 LEU 250 A LEU 251 n 251 LEU 251 A GLU 252 n 252 GLU 252 A MET 253 n 253 MET 253 A ARG 254 n 254 ARG 254 A LYS 255 n 255 LYS 255 A PHE 256 n 256 PHE 256 A ARG 257 n 257 ARG 257 A MET 258 n 258 MET 258 A GLY 259 n 259 GLY 259 A LEU 260 n 260 LEU 260 A ILE 261 n 261 ILE 261 A GLN 262 n 262 GLN 262 A THR 263 n 263 THR 263 A ALA 264 n 264 ALA 264 A ASP 265 n 265 ASP 265 A GLN 266 n 266 GLN 266 A LEU 267 n 267 LEU 267 A ARG 268 n 268 ARG 268 A PHE 269 n 269 PHE 269 A SER 270 n 270 SER 270 A TYR 271 n 271 TYR 271 A LEU 272 n 272 LEU 272 A ALA 273 n 273 ALA 273 A VAL 274 n 274 VAL 274 A ILE 275 n 275 ILE 275 A GLU 276 n 276 GLU 276 A GLY 277 n 277 GLY 277 A ALA 278 n 278 ALA 278 A LYS 279 n 279 LYS 279 A PHE 280 n 280 PHE 280 A ILE 281 n 281 ILE 281 A MET 282 n 282 MET 282 A n 283 283 A n 284 284 A n 285 285 A n 286 286 A n 287 287 A n 288 288 A n 289 289 A n 290 290 A n 291 291 A n 292 292 A n 293 293 A n 294 294 A n 295 295 A n 296 296 A n 297 297 A n 298 298 A n 299 299 A n 300 300 A n 301 301 A n 302 302 A n 303 303 A n 304 304 A n 305 305 A n 306 306 A n 307 307 A n 308 308 A n 309 309 A n 310 310 A n 311 311 A n 312 312 A n 313 313 A n 314 314 A n 315 315 A n 316 316 A n 317 317 A n 318 318 A n 319 319 A n 320 320 A n 321 321 A author_and_software_defined_assembly PISA 1 monomeric 130 2 13670 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 57 A N ILE 57 A O ALA 69 A O ALA 69 A N ILE 72 A N ILE 72 A O TYR 81 A O TYR 81 A N ILE 82 A N ILE 82 A O VAL 213 A O VAL 213 A O VAL 212 A O VAL 212 A N VAL 108 A N VAL 108 A N VAL 107 A N VAL 107 A O PHE 174 A O PHE 174 A O HIS 173 A O HIS 173 A N ARG 156 A N ARG 156 A O GLU 161 A O GLU 161 A N LYS 141 A N LYS 141 A O LEU 140 A O LEU 140 A N PHE 135 A N PHE 135 A N GLU 115 A N GLU 115 A O SER 118 A O SER 118 1 A GLY 283 A GLY 283 1 Y 1 A ASP 284 A ASP 284 1 Y 1 A SER 285 A SER 285 1 Y 1 A SER 286 A SER 286 1 Y 1 A VAL 287 A VAL 287 1 Y 1 A GLN 288 A GLN 288 1 Y 1 A ASP 289 A ASP 289 1 Y 1 A GLN 290 A GLN 290 1 Y 1 A TRP 291 A TRP 291 1 Y 1 A LYS 292 A LYS 292 1 Y 1 A GLU 293 A GLU 293 1 Y 1 A LEU 294 A LEU 294 1 Y 1 A SER 295 A SER 295 1 Y 1 A HIS 296 A HIS 296 1 Y 1 A GLU 297 A GLU 297 1 Y 1 A ASP 298 A ASP 298 1 Y 1 A LEU 299 A LEU 299 1 Y 1 A GLU 300 A GLU 300 1 Y 1 A PRO 301 A PRO 301 1 Y 1 A PRO 302 A PRO 302 1 Y 1 A PRO 303 A PRO 303 1 Y 1 A GLU 304 A GLU 304 1 Y 1 A HIS 305 A HIS 305 1 Y 1 A ILE 306 A ILE 306 1 Y 1 A PRO 307 A PRO 307 1 Y 1 A PRO 308 A PRO 308 1 Y 1 A PRO 309 A PRO 309 1 Y 1 A PRO 310 A PRO 310 1 Y 1 A ARG 311 A ARG 311 1 Y 1 A PRO 312 A PRO 312 1 Y 1 A PRO 313 A PRO 313 1 Y 1 A LYS 314 A LYS 314 1 Y 1 A ARG 315 A ARG 315 1 Y 1 A ILE 316 A ILE 316 1 Y 1 A LEU 317 A LEU 317 1 Y 1 A GLU 318 A GLU 318 1 Y 1 A PRO 319 A PRO 319 1 Y 1 A HIS 320 A HIS 320 1 Y 1 A ASN 321 A ASN 321 1 Y 1 A A HZ1 O LYS HOH 36 501 0.57 C 1 A A HZ1 O LYS HOH 36 501 0.57 D 1 A A NZ O LYS HOH 36 501 1.13 C 1 A A NZ O LYS HOH 36 501 1.13 D 1 A A HZ2 O LYS HOH 73 503 1.24 C 1 A A HZ2 O LYS HOH 73 503 1.24 D 1 A A HD2 O PRO HOH 38 577 1.29 C 1 A A HD2 O PRO HOH 38 577 1.29 D 1 A A HH22 O ARG HOH 45 512 1.58 C 1 A A HH22 O ARG HOH 45 512 1.58 D 1 A A OE1 O GLN HOH 262 502 1.74 A 1 A A OE1 O GLN HOH 262 502 1.74 B 1 A A CE O LYS HOH 36 501 1.84 C 1 A A CE O LYS HOH 36 501 1.84 D 1 A A NZ O LYS HOH 73 503 1.91 C 1 A A NZ O LYS HOH 73 503 1.91 D 1 A A OE2 O GLU HOH 252 504 1.99 C 1 A A OE2 O GLU HOH 252 504 1.99 D 1 A A O O HOH HOH 502 621 2.00 1 A A OG O SER HOH 32 505 2.03 C 1 A A OG O SER HOH 32 505 2.03 D 1 A A CE O LYS HOH 73 503 2.11 C 1 A A CE O LYS HOH 73 503 2.11 D 1 A A O O HOH HOH 557 651 2.14 1 A A O O HOH HOH 558 638 2.15 1 A A NZ O LYS HOH 36 506 2.15 C 1 A A NZ O LYS HOH 36 506 2.15 D 1 A ALA 69 -11.65 1 A ALA 69 -11.65 1 A A C N ASN ARG 44 45 1.16 C 1 A A C N ASN ARG 44 45 1.16 D 1 -3.45 0.50 120.30 116.85 A A A NE CZ NH1 ARG ARG ARG 43 43 43 C C C N 1 -3.45 0.50 120.30 116.85 A A A NE CZ NH1 ARG ARG ARG 43 43 43 D D D N 1 3.44 0.50 120.30 123.74 A A A NE CZ NH2 ARG ARG ARG 43 43 43 C C C N 1 3.44 0.50 120.30 123.74 A A A NE CZ NH2 ARG ARG ARG 43 43 43 D D D N 1 -10.35 1.60 122.70 112.35 A A A O C N ARG ARG ASN 43 43 44 C C Y 1 -10.35 1.60 122.70 112.35 A A A O C N ARG ARG ASN 43 43 44 D D Y 1 5.79 0.90 118.30 124.09 A A A CB CG OD1 ASP ASP ASP 63 63 63 C C C N 1 5.79 0.90 118.30 124.09 A A A CB CG OD1 ASP ASP ASP 63 63 63 D D D N 1 -15.41 2.20 117.20 101.79 A A A CA C N ASN ASN ALA 68 68 69 C C Y 1 -15.41 2.20 117.20 101.79 A A A CA C N ASN ASN ALA 68 68 69 D D Y 1 11.13 1.60 122.70 133.83 A A A O C N ASN ASN ALA 68 68 69 C C Y 1 11.13 1.60 122.70 133.83 A A A O C N ASN ASN ALA 68 68 69 D D Y 1 8.83 1.10 114.20 123.03 A A A CA CB SG CYS CYS CYS 121 121 121 A A A N 1 8.83 1.10 114.20 123.03 A A A CA CB SG CYS CYS CYS 121 121 121 B B B N 1 -16.03 2.10 128.40 112.37 A A A C N CD TRP PRO PRO 125 126 126 C C C Y 1 -16.03 2.10 128.40 112.37 A A A C N CD TRP PRO PRO 125 126 126 D D D Y 1 -13.63 2.10 128.40 114.77 A A A C N CD SER PRO PRO 205 206 206 C C C Y 1 -13.63 2.10 128.40 114.77 A A A C N CD SER PRO PRO 205 206 206 D D D Y 1 7.73 1.10 114.20 121.93 A A A CA CB SG CYS CYS CYS 226 226 226 C C C N 1 7.73 1.10 114.20 121.93 A A A CA CB SG CYS CYS CYS 226 226 226 D D D N 1 10.85 1.70 111.00 121.85 A A A CB CG CD1 LEU LEU LEU 234 234 234 C C C N 1 10.85 1.70 111.00 121.85 A A A CB CG CD1 LEU LEU LEU 234 234 234 D D D N 1 -15.53 2.10 128.40 112.87 A A A C N CD ASP PRO PRO 240 241 241 C C C Y 1 -15.53 2.10 128.40 112.87 A A A C N CD ASP PRO PRO 240 241 241 D D D Y 1 4.89 0.50 120.30 125.19 A A A NE CZ NH2 ARG ARG ARG 257 257 257 C C C N 1 4.89 0.50 120.30 125.19 A A A NE CZ NH2 ARG ARG ARG 257 257 257 D D D N 1 A A C N ASN ARG 44 45 -0.176 0.023 1.336 1.160 C Y 1 A A C N ASN ARG 44 45 -0.176 0.023 1.336 1.160 D Y 1 A A CB SG CYS CYS 215 215 -0.099 0.016 1.812 1.713 C C N 1 A A CB SG CYS CYS 215 215 -0.099 0.016 1.812 1.713 D D N 1 A SER 15 C -107.47 69.63 1 A SER 15 D -107.47 69.63 1 A ASP 63 C -57.75 -122.40 1 A ASP 63 D -57.75 -122.40 1 A LYS 103 C 72.00 36.69 1 A LYS 103 D 72.00 36.69 1 A GLU 129 C -36.54 -29.28 1 A GLU 129 D -36.54 -29.28 1 A PRO 180 C -35.38 165.73 1 A PRO 180 D -35.38 165.73 1 A PRO 185 C -51.16 178.17 1 A PRO 185 D -51.16 178.17 1 A CYS 215 A -129.16 -133.42 1 A CYS 215 B -129.16 -133.42 1 A CYS 215 C -125.15 -101.18 1 A CYS 215 D -125.15 -101.18 1 A ARG 254 C -58.63 -6.42 1 A ARG 254 D -58.63 -6.42 1 A LEU 260 C -59.12 107.98 1 A LEU 260 D -59.12 107.98 1 A ILE 261 A 73.59 109.48 1 A ILE 261 B 73.59 109.48 1 A ILE 261 C 108.30 87.96 1 A ILE 261 D 108.30 87.96 1 A TYR 271 C -61.94 -70.46 1 A TYR 271 D -61.94 -70.46 1 A LYS 279 C -58.75 74.79 1 A LYS 279 D -58.75 74.79 136.560 45.7267 10.720 0.2210 0.1860 0.1874 2.2120 62.9460 1001 24452 25453 3.9300 99.8900 0.2500 1 THROUGHOUT 1.350 MOLECULAR REPLACEMENT 20.8300 1.1000 1.2000 ML FLAT BULK SOLVENT MODEL 2.2120 62.9460 153 2507 77.09 47.19 49 0 2305 282 0.021 9227 2.058 12464 0.164 1326 0.014 1616 20.412 3556 0.3141 0.2899 2.3288 139 3431 3570 7 99.0000 0.2795 0.2191 2.4747 143 3425 3568 7 100.0000 0.2002 0.1967 2.6657 146 3462 3608 7 100.0000 0.2483 0.1941 2.9340 141 3457 3598 7 100.0000 0.2124 0.1833 3.3585 142 3495 3637 7 100.0000 0.2288 0.1660 4.2313 142 3518 3660 7 100.0000 0.1867 0.1732 62.9719 148 3664 3812 7 100.0000 37.070 2.210 77.952 5QDW 48274 -3.000 0.997 0.128 0.142 1.078 1 10.240 251441 99.900 1.128 2.210 2.350 1.470 39449 7769 7718 0.507 1.259 1 0 99.300 0.684 2.350 2.510 2.230 36826 7411 7408 0.659 0.766 1 0 100.000 0.496 2.510 2.710 3.360 36530 6824 6823 0.846 0.550 1 0 100.000 0.316 2.710 2.970 5.360 34150 6314 6314 0.932 0.350 1 0 100.000 0.172 2.970 3.320 9.060 30036 5692 5692 0.981 0.192 1 0 100.000 0.090 3.320 3.830 16.210 24288 4982 4976 0.994 0.101 1 0 99.900 0.054 3.830 4.690 26.690 23270 4250 4250 0.998 0.060 1 0 100.000 0.048 4.690 6.610 28.300 17021 3285 3285 0.998 0.053 1 0 100.000 0.032 6.610 77.952 39.310 9871 1810 1808 0.999 0.036 1 0 99.900 refinement Paul D. Adams PDAdams@lbl.gov C++ http://www.phenix-online.org/ PHENIX package 1.10.1_2155 data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html XSCALE package phasing Randy J. Read cimr-phaser@lists.cam.ac.uk http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program data extraction PDB deposit@deposit.rcsb.org July. 13, 2016 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.22 data reduction Wolfgang Kabsch http://homes.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xds_program.html XDS package Tyrosine-protein phosphatase non-receptor type 1 (E.C.3.1.3.48) PanDDA analysis group deposition -- Crystal structure of PTP1B in complex with compound_FMOPL000465a 1 N N 2 N N 3 N N 4 N N A GLU 2 A GLU 2 HELX_P A GLY 14 A GLY 14 1 AA1 13 A SER 15 A SER 15 HELX_P A ALA 27 A ALA 27 1 AA2 13 A SER 32 A SER 32 HELX_P A LEU 37 A LEU 37 1 AA3 6 A PRO 38 A PRO 38 HELX_P A ASN 44 A ASN 44 5 AA4 7 A THR 91 A THR 91 HELX_P A LYS 103 A LYS 103 1 AA5 13 A PRO 188 A PRO 188 HELX_P A SER 201 A SER 201 1 AA6 14 A GLY 220 A GLY 220 HELX_P A ARG 238 A ARG 238 1 AA7 19 A ASP 240 A ASP 240 HELX_P A VAL 244 A VAL 244 5 AA8 5 A ASP 245 A ASP 245 HELX_P A ARG 254 A ARG 254 1 AA9 10 A THR 263 A THR 263 HELX_P A MET 282 A MET 282 1 AB1 20 covale 1.457 none C C A ASP 240 A CG ASP 240 1_555 A SER 242 A OG SER 242 1_555 covale 1.457 none D D A ASP 240 A CG ASP 240 1_555 A SER 242 A OG SER 242 1_555 HYDROLASE PanDDA, SGC - Diamond I04-1 fragment screening, protein tyrosine phosphatase, PTP, protein tyrosine phosphatase 1B, PTP1B, enzyme, allostery, multiconformer, HYDROLASE PTN1_HUMAN UNP 1 1 P18031 MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDNDYINASLIKMEEAQRS YILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLEL ENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD PSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHEDLEPPPEHIPPPPRPPKRILEPH N 1 321 5QDW 1 321 P18031 A 1 1 321 1 CYS engineered mutation SER 32 5QDW A P18031 UNP 32 32 1 CYS engineered mutation VAL 92 5QDW A P18031 UNP 92 92 9 2 anti-parallel anti-parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel A ARG 56 A ARG 56 A LYS 58 A LYS 58 A TYR 66 A TYR 66 A MET 74 A MET 74 A ARG 79 A ARG 79 A THR 84 A THR 84 A VAL 211 A VAL 211 A HIS 214 A HIS 214 A GLY 106 A GLY 106 A MET 109 A MET 109 A THR 168 A THR 168 A TYR 176 A TYR 176 A TYR 153 A TYR 153 A ASN 162 A ASN 162 A LEU 140 A LEU 140 A ILE 149 A ILE 149 A MET 133 A MET 133 A PHE 135 A PHE 135 A MET 114 A MET 114 A GLU 115 A GLU 115 A SER 118 A SER 118 A LEU 119 A LEU 119 binding site for residue JGJ A 401 A JGJ 401 Software 4 binding site for residue TRS A 402 A TRS 402 Software 4 A SER 146 A SER 146 4 1_555 A ASP 148 A ASP 148 4 1_555 A VAL 155 A VAL 155 4 1_555 A GLN 157 A GLN 157 4 1_555 A HIS 54 A HIS 54 4 1_555 A LYS 128 A LYS 128 4 4_455 A GLU 129 A GLU 129 4 4_455 A GLU 130 A GLU 130 4 4_455 152 P 31 2 1