0.011110
0.006414
0.000000
0.000000
0.012828
0.000000
0.000000
0.000000
0.009371
0.000000
0.000000
0.000000
Keedy, D.A.
Hill, Z.B.
Biel, J.T.
Kang, E.
Rettenmaier, T.J.
Brandao-Neto, J.
von Delft, F.
Wells, J.A.
Fraser, J.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
90.011
90.011
106.714
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C11 H15 N O2
193.242
2-methoxy-N-[(1R)-1-phenylethyl]acetamide
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C4 H12 N O3 1
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
non-polymer
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Elife
2050-084X
7
10.7554/eLife.36307
29877794
An expanded allosteric network in PTP1B by multitemperature crystallography, fragment screening, and covalent tethering.
2018
0000-0002-9184-7586
0000-0002-0935-8362
0000-0001-6015-320X
0000-0002-6693-8603
0000-0003-0378-0017
0000-0001-8267-5519
0000-0002-5080-2859
Several residues are not properly linked with short C-N bond distance for certain conformers.
100
1
PIXEL
2016-09-25
DECTRIS PILATUS 6M
SINGLE WAVELENGTH
M
x-ray
1
0.92819
1.0
I04-1
Diamond
0.92819
SYNCHROTRON
DIAMOND BEAMLINE I04-1
37345.562
Tyrosine-protein phosphatase non-receptor type 1
3.1.3.48
catalytic domain
C32S, C92V
1
man
polymer
193.242
2-methoxy-N-[(1R)-1-phenylethyl]acetamide
1
syn
non-polymer
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
1
syn
non-polymer
18.015
water
153
nat
water
Protein-tyrosine phosphatase 1B,PTP-1B
no
no
MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPSRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDNDYINASLIKMEEAQRS
YILTQGPLPNTVGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLEL
ENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD
PSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHEDLEPPPEHIPPPPRPPKRILEPH
N
MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPSRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDNDYINASLIKMEEAQRS
YILTQGPLPNTVGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLEL
ENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD
PSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHEDLEPPPEHIPPPPRPPKRILEPH
N
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
321
PTPN1, PTP1B
9606
Homo sapiens
469008
Escherichia coli
BL21(DE3)
plasmid
Biological sequence
pET24b
1
3.34
63.19
VAPOR DIFFUSION
7.5
well solution: 0.3 M magnesium acetate, 0.1 M HEPES pH 7.5, 0.1% beta-mercaptoethanol, 13-14% PEG 8000, 2% ethanol
277
citation
citation_author
entity
repository
Initial release
Data collection
Database references
Structure summary
1
0
2018-10-10
1
1
2019-02-06
_citation.country
_citation.journal_abbrev
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.journal_volume
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.title
_citation.year
_entity.formula_weight
RCSB
Y
RCSB
2018-08-30
REL
REL
PTP1B screened against fragment libraries by X-ray crystallography at the XChem facility of Diamond Light Source beamline I04-1
PanDDA analysis group deposition of models with modelled events (e.g. bound ligands)
changed state
JGJ
2-methoxy-N-[(1R)-1-phenylethyl]acetamide
TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
HOH
water
LIG
1
2
JGJ
JGJ
401
A
TRS
500
3
TRS
TRS
402
A
HOH
104
4
HOH
HOH
501
A
HOH
149
4
HOH
HOH
502
A
HOH
37
4
HOH
HOH
503
A
HOH
20
4
HOH
HOH
504
A
HOH
99
4
HOH
HOH
505
A
HOH
73
4
HOH
HOH
506
A
HOH
30
4
HOH
HOH
507
A
HOH
7
4
HOH
HOH
508
A
HOH
100
4
HOH
HOH
509
A
HOH
61
4
HOH
HOH
510
A
HOH
52
4
HOH
HOH
511
A
HOH
79
4
HOH
HOH
512
A
HOH
119
4
HOH
HOH
513
A
HOH
12
4
HOH
HOH
514
A
HOH
91
4
HOH
HOH
515
A
HOH
107
4
HOH
HOH
516
A
HOH
54
4
HOH
HOH
517
A
HOH
108
4
HOH
HOH
518
A
HOH
43
4
HOH
HOH
519
A
HOH
44
4
HOH
HOH
520
A
HOH
14
4
HOH
HOH
521
A
HOH
24
4
HOH
HOH
522
A
HOH
128
4
HOH
HOH
523
A
HOH
4
4
HOH
HOH
524
A
HOH
71
4
HOH
HOH
525
A
HOH
18
4
HOH
HOH
526
A
HOH
25
4
HOH
HOH
527
A
HOH
85
4
HOH
HOH
528
A
HOH
48
4
HOH
HOH
529
A
HOH
49
4
HOH
HOH
530
A
HOH
26
4
HOH
HOH
531
A
HOH
82
4
HOH
HOH
532
A
HOH
3
4
HOH
HOH
533
A
HOH
40
4
HOH
HOH
534
A
HOH
93
4
HOH
HOH
535
A
HOH
2
4
HOH
HOH
536
A
HOH
98
4
HOH
HOH
537
A
HOH
39
4
HOH
HOH
538
A
HOH
77
4
HOH
HOH
539
A
HOH
92
4
HOH
HOH
540
A
HOH
50
4
HOH
HOH
541
A
HOH
66
4
HOH
HOH
542
A
HOH
133
4
HOH
HOH
543
A
HOH
15
4
HOH
HOH
544
A
HOH
55
4
HOH
HOH
545
A
HOH
88
4
HOH
HOH
546
A
HOH
63
4
HOH
HOH
547
A
HOH
10
4
HOH
HOH
548
A
HOH
59
4
HOH
HOH
549
A
HOH
53
4
HOH
HOH
550
A
HOH
31
4
HOH
HOH
551
A
HOH
70
4
HOH
HOH
552
A
HOH
5
4
HOH
HOH
553
A
HOH
69
4
HOH
HOH
554
A
HOH
13
4
HOH
HOH
555
A
HOH
80
4
HOH
HOH
556
A
HOH
86
4
HOH
HOH
557
A
HOH
134
4
HOH
HOH
558
A
HOH
6
4
HOH
HOH
559
A
HOH
32
4
HOH
HOH
560
A
HOH
23
4
HOH
HOH
561
A
HOH
121
4
HOH
HOH
562
A
HOH
106
4
HOH
HOH
563
A
HOH
11
4
HOH
HOH
564
A
HOH
38
4
HOH
HOH
565
A
HOH
84
4
HOH
HOH
566
A
HOH
8
4
HOH
HOH
567
A
HOH
1
4
HOH
HOH
568
A
HOH
97
4
HOH
HOH
569
A
HOH
75
4
HOH
HOH
570
A
HOH
16
4
HOH
HOH
571
A
HOH
27
4
HOH
HOH
572
A
HOH
35
4
HOH
HOH
573
A
HOH
111
4
HOH
HOH
574
A
HOH
57
4
HOH
HOH
575
A
HOH
83
4
HOH
HOH
576
A
HOH
76
4
HOH
HOH
577
A
HOH
129
4
HOH
HOH
578
A
HOH
56
4
HOH
HOH
579
A
HOH
17
4
HOH
HOH
580
A
HOH
87
4
HOH
HOH
581
A
HOH
9
4
HOH
HOH
582
A
HOH
148
4
HOH
HOH
583
A
HOH
46
4
HOH
HOH
584
A
HOH
120
4
HOH
HOH
585
A
HOH
45
4
HOH
HOH
586
A
HOH
36
4
HOH
HOH
587
A
HOH
33
4
HOH
HOH
588
A
HOH
21
4
HOH
HOH
589
A
HOH
136
4
HOH
HOH
590
A
HOH
67
4
HOH
HOH
591
A
HOH
127
4
HOH
HOH
592
A
HOH
41
4
HOH
HOH
593
A
HOH
95
4
HOH
HOH
594
A
HOH
130
4
HOH
HOH
595
A
HOH
22
4
HOH
HOH
596
A
HOH
103
4
HOH
HOH
597
A
HOH
126
4
HOH
HOH
598
A
HOH
72
4
HOH
HOH
599
A
HOH
152
4
HOH
HOH
600
A
HOH
51
4
HOH
HOH
601
A
HOH
94
4
HOH
HOH
602
A
HOH
141
4
HOH
HOH
603
A
HOH
125
4
HOH
HOH
604
A
HOH
19
4
HOH
HOH
605
A
HOH
135
4
HOH
HOH
606
A
HOH
150
4
HOH
HOH
607
A
HOH
47
4
HOH
HOH
608
A
HOH
122
4
HOH
HOH
609
A
HOH
114
4
HOH
HOH
610
A
HOH
96
4
HOH
HOH
611
A
HOH
90
4
HOH
HOH
612
A
HOH
29
4
HOH
HOH
613
A
HOH
123
4
HOH
HOH
614
A
HOH
81
4
HOH
HOH
615
A
HOH
78
4
HOH
HOH
616
A
HOH
42
4
HOH
HOH
617
A
HOH
34
4
HOH
HOH
618
A
HOH
146
4
HOH
HOH
619
A
HOH
68
4
HOH
HOH
620
A
HOH
110
4
HOH
HOH
621
A
HOH
147
4
HOH
HOH
622
A
HOH
89
4
HOH
HOH
623
A
HOH
138
4
HOH
HOH
624
A
HOH
65
4
HOH
HOH
625
A
HOH
151
4
HOH
HOH
626
A
HOH
28
4
HOH
HOH
627
A
HOH
117
4
HOH
HOH
628
A
HOH
60
4
HOH
HOH
629
A
HOH
115
4
HOH
HOH
630
A
HOH
112
4
HOH
HOH
631
A
HOH
101
4
HOH
HOH
632
A
HOH
153
4
HOH
HOH
633
A
HOH
145
4
HOH
HOH
634
A
HOH
144
4
HOH
HOH
635
A
HOH
142
4
HOH
HOH
636
A
HOH
143
4
HOH
HOH
637
A
HOH
132
4
HOH
HOH
638
A
HOH
113
4
HOH
HOH
639
A
HOH
109
4
HOH
HOH
640
A
HOH
139
4
HOH
HOH
641
A
HOH
137
4
HOH
HOH
642
A
HOH
131
4
HOH
HOH
643
A
HOH
140
4
HOH
HOH
644
A
HOH
116
4
HOH
HOH
645
A
HOH
62
4
HOH
HOH
646
A
HOH
124
4
HOH
HOH
647
A
HOH
64
4
HOH
HOH
648
A
HOH
118
4
HOH
HOH
649
A
HOH
102
4
HOH
HOH
650
A
HOH
105
4
HOH
HOH
651
A
HOH
58
4
HOH
HOH
652
A
HOH
74
4
HOH
HOH
653
A
MET
1
n
1
MET
1
A
GLU
2
n
2
GLU
2
A
MET
3
n
3
MET
3
A
GLU
4
n
4
GLU
4
A
LYS
5
n
5
LYS
5
A
GLU
6
n
6
GLU
6
A
PHE
7
n
7
PHE
7
A
GLU
8
n
8
GLU
8
A
GLN
9
n
9
GLN
9
A
ILE
10
n
10
ILE
10
A
ASP
11
n
11
ASP
11
A
LYS
12
n
12
LYS
12
A
SER
13
n
13
SER
13
A
GLY
14
n
14
GLY
14
A
SER
15
n
15
SER
15
A
TRP
16
n
16
TRP
16
A
ALA
17
n
17
ALA
17
A
ALA
18
n
18
ALA
18
A
ILE
19
n
19
ILE
19
A
TYR
20
n
20
TYR
20
A
GLN
21
n
21
GLN
21
A
ASP
22
n
22
ASP
22
A
ILE
23
n
23
ILE
23
A
ARG
24
n
24
ARG
24
A
HIS
25
n
25
HIS
25
A
GLU
26
n
26
GLU
26
A
ALA
27
n
27
ALA
27
A
SER
28
n
28
SER
28
A
ASP
29
n
29
ASP
29
A
PHE
30
n
30
PHE
30
A
PRO
31
n
31
PRO
31
A
SER
32
n
32
SER
32
A
ARG
33
n
33
ARG
33
A
VAL
34
n
34
VAL
34
A
ALA
35
n
35
ALA
35
A
LYS
36
n
36
LYS
36
A
LEU
37
n
37
LEU
37
A
PRO
38
n
38
PRO
38
A
LYS
39
n
39
LYS
39
A
ASN
40
n
40
ASN
40
A
LYS
41
n
41
LYS
41
A
ASN
42
n
42
ASN
42
A
ARG
43
n
43
ARG
43
A
ASN
44
n
44
ASN
44
A
ARG
45
n
45
ARG
45
A
TYR
46
n
46
TYR
46
A
ARG
47
n
47
ARG
47
A
ASP
48
n
48
ASP
48
A
VAL
49
n
49
VAL
49
A
SER
50
n
50
SER
50
A
PRO
51
n
51
PRO
51
A
PHE
52
n
52
PHE
52
A
ASP
53
n
53
ASP
53
A
HIS
54
n
54
HIS
54
A
SER
55
n
55
SER
55
A
ARG
56
n
56
ARG
56
A
ILE
57
n
57
ILE
57
A
LYS
58
n
58
LYS
58
A
LEU
59
n
59
LEU
59
A
HIS
60
n
60
HIS
60
A
GLN
61
n
61
GLN
61
A
GLU
62
n
62
GLU
62
A
ASP
63
n
63
ASP
63
A
ASN
64
n
64
ASN
64
A
ASP
65
n
65
ASP
65
A
TYR
66
n
66
TYR
66
A
ILE
67
n
67
ILE
67
A
ASN
68
n
68
ASN
68
A
ALA
69
n
69
ALA
69
A
SER
70
n
70
SER
70
A
LEU
71
n
71
LEU
71
A
ILE
72
n
72
ILE
72
A
LYS
73
n
73
LYS
73
A
MET
74
n
74
MET
74
A
GLU
75
n
75
GLU
75
A
GLU
76
n
76
GLU
76
A
ALA
77
n
77
ALA
77
A
GLN
78
n
78
GLN
78
A
ARG
79
n
79
ARG
79
A
SER
80
n
80
SER
80
A
TYR
81
n
81
TYR
81
A
ILE
82
n
82
ILE
82
A
LEU
83
n
83
LEU
83
A
THR
84
n
84
THR
84
A
GLN
85
n
85
GLN
85
A
GLY
86
n
86
GLY
86
A
PRO
87
n
87
PRO
87
A
LEU
88
n
88
LEU
88
A
PRO
89
n
89
PRO
89
A
ASN
90
n
90
ASN
90
A
THR
91
n
91
THR
91
A
VAL
92
n
92
VAL
92
A
GLY
93
n
93
GLY
93
A
HIS
94
n
94
HIS
94
A
PHE
95
n
95
PHE
95
A
TRP
96
n
96
TRP
96
A
GLU
97
n
97
GLU
97
A
MET
98
n
98
MET
98
A
VAL
99
n
99
VAL
99
A
TRP
100
n
100
TRP
100
A
GLU
101
n
101
GLU
101
A
GLN
102
n
102
GLN
102
A
LYS
103
n
103
LYS
103
A
SER
104
n
104
SER
104
A
ARG
105
n
105
ARG
105
A
GLY
106
n
106
GLY
106
A
VAL
107
n
107
VAL
107
A
VAL
108
n
108
VAL
108
A
MET
109
n
109
MET
109
A
LEU
110
n
110
LEU
110
A
ASN
111
n
111
ASN
111
A
ARG
112
n
112
ARG
112
A
VAL
113
n
113
VAL
113
A
MET
114
n
114
MET
114
A
GLU
115
n
115
GLU
115
A
LYS
116
n
116
LYS
116
A
GLY
117
n
117
GLY
117
A
SER
118
n
118
SER
118
A
LEU
119
n
119
LEU
119
A
LYS
120
n
120
LYS
120
A
CYS
121
n
121
CYS
121
A
ALA
122
n
122
ALA
122
A
GLN
123
n
123
GLN
123
A
TYR
124
n
124
TYR
124
A
TRP
125
n
125
TRP
125
A
PRO
126
n
126
PRO
126
A
GLN
127
n
127
GLN
127
A
LYS
128
n
128
LYS
128
A
GLU
129
n
129
GLU
129
A
GLU
130
n
130
GLU
130
A
LYS
131
n
131
LYS
131
A
GLU
132
n
132
GLU
132
A
MET
133
n
133
MET
133
A
ILE
134
n
134
ILE
134
A
PHE
135
n
135
PHE
135
A
GLU
136
n
136
GLU
136
A
ASP
137
n
137
ASP
137
A
THR
138
n
138
THR
138
A
ASN
139
n
139
ASN
139
A
LEU
140
n
140
LEU
140
A
LYS
141
n
141
LYS
141
A
LEU
142
n
142
LEU
142
A
THR
143
n
143
THR
143
A
LEU
144
n
144
LEU
144
A
ILE
145
n
145
ILE
145
A
SER
146
n
146
SER
146
A
GLU
147
n
147
GLU
147
A
ASP
148
n
148
ASP
148
A
ILE
149
n
149
ILE
149
A
LYS
150
n
150
LYS
150
A
SER
151
n
151
SER
151
A
TYR
152
n
152
TYR
152
A
TYR
153
n
153
TYR
153
A
THR
154
n
154
THR
154
A
VAL
155
n
155
VAL
155
A
ARG
156
n
156
ARG
156
A
GLN
157
n
157
GLN
157
A
LEU
158
n
158
LEU
158
A
GLU
159
n
159
GLU
159
A
LEU
160
n
160
LEU
160
A
GLU
161
n
161
GLU
161
A
ASN
162
n
162
ASN
162
A
LEU
163
n
163
LEU
163
A
THR
164
n
164
THR
164
A
THR
165
n
165
THR
165
A
GLN
166
n
166
GLN
166
A
GLU
167
n
167
GLU
167
A
THR
168
n
168
THR
168
A
ARG
169
n
169
ARG
169
A
GLU
170
n
170
GLU
170
A
ILE
171
n
171
ILE
171
A
LEU
172
n
172
LEU
172
A
HIS
173
n
173
HIS
173
A
PHE
174
n
174
PHE
174
A
HIS
175
n
175
HIS
175
A
TYR
176
n
176
TYR
176
A
THR
177
n
177
THR
177
A
THR
178
n
178
THR
178
A
TRP
179
n
179
TRP
179
A
PRO
180
n
180
PRO
180
A
ASP
181
n
181
ASP
181
A
PHE
182
n
182
PHE
182
A
GLY
183
n
183
GLY
183
A
VAL
184
n
184
VAL
184
A
PRO
185
n
185
PRO
185
A
GLU
186
n
186
GLU
186
A
SER
187
n
187
SER
187
A
PRO
188
n
188
PRO
188
A
ALA
189
n
189
ALA
189
A
SER
190
n
190
SER
190
A
PHE
191
n
191
PHE
191
A
LEU
192
n
192
LEU
192
A
ASN
193
n
193
ASN
193
A
PHE
194
n
194
PHE
194
A
LEU
195
n
195
LEU
195
A
PHE
196
n
196
PHE
196
A
LYS
197
n
197
LYS
197
A
VAL
198
n
198
VAL
198
A
ARG
199
n
199
ARG
199
A
GLU
200
n
200
GLU
200
A
SER
201
n
201
SER
201
A
GLY
202
n
202
GLY
202
A
SER
203
n
203
SER
203
A
LEU
204
n
204
LEU
204
A
SER
205
n
205
SER
205
A
PRO
206
n
206
PRO
206
A
GLU
207
n
207
GLU
207
A
HIS
208
n
208
HIS
208
A
GLY
209
n
209
GLY
209
A
PRO
210
n
210
PRO
210
A
VAL
211
n
211
VAL
211
A
VAL
212
n
212
VAL
212
A
VAL
213
n
213
VAL
213
A
HIS
214
n
214
HIS
214
A
CYS
215
n
215
CYS
215
A
SER
216
n
216
SER
216
A
ALA
217
n
217
ALA
217
A
GLY
218
n
218
GLY
218
A
ILE
219
n
219
ILE
219
A
GLY
220
n
220
GLY
220
A
ARG
221
n
221
ARG
221
A
SER
222
n
222
SER
222
A
GLY
223
n
223
GLY
223
A
THR
224
n
224
THR
224
A
PHE
225
n
225
PHE
225
A
CYS
226
n
226
CYS
226
A
LEU
227
n
227
LEU
227
A
ALA
228
n
228
ALA
228
A
ASP
229
n
229
ASP
229
A
THR
230
n
230
THR
230
A
CYS
231
n
231
CYS
231
A
LEU
232
n
232
LEU
232
A
LEU
233
n
233
LEU
233
A
LEU
234
n
234
LEU
234
A
MET
235
n
235
MET
235
A
ASP
236
n
236
ASP
236
A
LYS
237
n
237
LYS
237
A
ARG
238
n
238
ARG
238
A
LYS
239
n
239
LYS
239
A
ASP
240
n
240
ASP
240
A
PRO
241
n
241
PRO
241
A
SER
242
n
242
SER
242
A
SER
243
n
243
SER
243
A
VAL
244
n
244
VAL
244
A
ASP
245
n
245
ASP
245
A
ILE
246
n
246
ILE
246
A
LYS
247
n
247
LYS
247
A
LYS
248
n
248
LYS
248
A
VAL
249
n
249
VAL
249
A
LEU
250
n
250
LEU
250
A
LEU
251
n
251
LEU
251
A
GLU
252
n
252
GLU
252
A
MET
253
n
253
MET
253
A
ARG
254
n
254
ARG
254
A
LYS
255
n
255
LYS
255
A
PHE
256
n
256
PHE
256
A
ARG
257
n
257
ARG
257
A
MET
258
n
258
MET
258
A
GLY
259
n
259
GLY
259
A
LEU
260
n
260
LEU
260
A
ILE
261
n
261
ILE
261
A
GLN
262
n
262
GLN
262
A
THR
263
n
263
THR
263
A
ALA
264
n
264
ALA
264
A
ASP
265
n
265
ASP
265
A
GLN
266
n
266
GLN
266
A
LEU
267
n
267
LEU
267
A
ARG
268
n
268
ARG
268
A
PHE
269
n
269
PHE
269
A
SER
270
n
270
SER
270
A
TYR
271
n
271
TYR
271
A
LEU
272
n
272
LEU
272
A
ALA
273
n
273
ALA
273
A
VAL
274
n
274
VAL
274
A
ILE
275
n
275
ILE
275
A
GLU
276
n
276
GLU
276
A
GLY
277
n
277
GLY
277
A
ALA
278
n
278
ALA
278
A
LYS
279
n
279
LYS
279
A
PHE
280
n
280
PHE
280
A
ILE
281
n
281
ILE
281
A
MET
282
n
282
MET
282
A
n
283
283
A
n
284
284
A
n
285
285
A
n
286
286
A
n
287
287
A
n
288
288
A
n
289
289
A
n
290
290
A
n
291
291
A
n
292
292
A
n
293
293
A
n
294
294
A
n
295
295
A
n
296
296
A
n
297
297
A
n
298
298
A
n
299
299
A
n
300
300
A
n
301
301
A
n
302
302
A
n
303
303
A
n
304
304
A
n
305
305
A
n
306
306
A
n
307
307
A
n
308
308
A
n
309
309
A
n
310
310
A
n
311
311
A
n
312
312
A
n
313
313
A
n
314
314
A
n
315
315
A
n
316
316
A
n
317
317
A
n
318
318
A
n
319
319
A
n
320
320
A
n
321
321
A
author_and_software_defined_assembly
PISA
1
monomeric
130
2
13670
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
57
A
N
ILE
57
A
O
ALA
69
A
O
ALA
69
A
N
ILE
72
A
N
ILE
72
A
O
TYR
81
A
O
TYR
81
A
N
ILE
82
A
N
ILE
82
A
O
VAL
213
A
O
VAL
213
A
O
VAL
212
A
O
VAL
212
A
N
VAL
108
A
N
VAL
108
A
N
VAL
107
A
N
VAL
107
A
O
PHE
174
A
O
PHE
174
A
O
HIS
173
A
O
HIS
173
A
N
ARG
156
A
N
ARG
156
A
O
GLU
161
A
O
GLU
161
A
N
LYS
141
A
N
LYS
141
A
O
LEU
140
A
O
LEU
140
A
N
PHE
135
A
N
PHE
135
A
N
GLU
115
A
N
GLU
115
A
O
SER
118
A
O
SER
118
1
A
GLY
283
A
GLY
283
1
Y
1
A
ASP
284
A
ASP
284
1
Y
1
A
SER
285
A
SER
285
1
Y
1
A
SER
286
A
SER
286
1
Y
1
A
VAL
287
A
VAL
287
1
Y
1
A
GLN
288
A
GLN
288
1
Y
1
A
ASP
289
A
ASP
289
1
Y
1
A
GLN
290
A
GLN
290
1
Y
1
A
TRP
291
A
TRP
291
1
Y
1
A
LYS
292
A
LYS
292
1
Y
1
A
GLU
293
A
GLU
293
1
Y
1
A
LEU
294
A
LEU
294
1
Y
1
A
SER
295
A
SER
295
1
Y
1
A
HIS
296
A
HIS
296
1
Y
1
A
GLU
297
A
GLU
297
1
Y
1
A
ASP
298
A
ASP
298
1
Y
1
A
LEU
299
A
LEU
299
1
Y
1
A
GLU
300
A
GLU
300
1
Y
1
A
PRO
301
A
PRO
301
1
Y
1
A
PRO
302
A
PRO
302
1
Y
1
A
PRO
303
A
PRO
303
1
Y
1
A
GLU
304
A
GLU
304
1
Y
1
A
HIS
305
A
HIS
305
1
Y
1
A
ILE
306
A
ILE
306
1
Y
1
A
PRO
307
A
PRO
307
1
Y
1
A
PRO
308
A
PRO
308
1
Y
1
A
PRO
309
A
PRO
309
1
Y
1
A
PRO
310
A
PRO
310
1
Y
1
A
ARG
311
A
ARG
311
1
Y
1
A
PRO
312
A
PRO
312
1
Y
1
A
PRO
313
A
PRO
313
1
Y
1
A
LYS
314
A
LYS
314
1
Y
1
A
ARG
315
A
ARG
315
1
Y
1
A
ILE
316
A
ILE
316
1
Y
1
A
LEU
317
A
LEU
317
1
Y
1
A
GLU
318
A
GLU
318
1
Y
1
A
PRO
319
A
PRO
319
1
Y
1
A
HIS
320
A
HIS
320
1
Y
1
A
ASN
321
A
ASN
321
1
Y
1
A
A
HZ1
O
LYS
HOH
36
501
0.57
C
1
A
A
HZ1
O
LYS
HOH
36
501
0.57
D
1
A
A
NZ
O
LYS
HOH
36
501
1.13
C
1
A
A
NZ
O
LYS
HOH
36
501
1.13
D
1
A
A
HZ2
O
LYS
HOH
73
503
1.24
C
1
A
A
HZ2
O
LYS
HOH
73
503
1.24
D
1
A
A
HD2
O
PRO
HOH
38
577
1.29
C
1
A
A
HD2
O
PRO
HOH
38
577
1.29
D
1
A
A
HH22
O
ARG
HOH
45
512
1.58
C
1
A
A
HH22
O
ARG
HOH
45
512
1.58
D
1
A
A
OE1
O
GLN
HOH
262
502
1.74
A
1
A
A
OE1
O
GLN
HOH
262
502
1.74
B
1
A
A
CE
O
LYS
HOH
36
501
1.84
C
1
A
A
CE
O
LYS
HOH
36
501
1.84
D
1
A
A
NZ
O
LYS
HOH
73
503
1.91
C
1
A
A
NZ
O
LYS
HOH
73
503
1.91
D
1
A
A
OE2
O
GLU
HOH
252
504
1.99
C
1
A
A
OE2
O
GLU
HOH
252
504
1.99
D
1
A
A
O
O
HOH
HOH
502
621
2.00
1
A
A
OG
O
SER
HOH
32
505
2.03
C
1
A
A
OG
O
SER
HOH
32
505
2.03
D
1
A
A
CE
O
LYS
HOH
73
503
2.11
C
1
A
A
CE
O
LYS
HOH
73
503
2.11
D
1
A
A
O
O
HOH
HOH
557
651
2.14
1
A
A
O
O
HOH
HOH
558
638
2.15
1
A
A
NZ
O
LYS
HOH
36
506
2.15
C
1
A
A
NZ
O
LYS
HOH
36
506
2.15
D
1
A
ALA
69
-11.65
1
A
ALA
69
-11.65
1
A
A
C
N
ASN
ARG
44
45
1.16
C
1
A
A
C
N
ASN
ARG
44
45
1.16
D
1
-3.45
0.50
120.30
116.85
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
43
43
43
C
C
C
N
1
-3.45
0.50
120.30
116.85
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
43
43
43
D
D
D
N
1
3.44
0.50
120.30
123.74
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
43
43
43
C
C
C
N
1
3.44
0.50
120.30
123.74
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
43
43
43
D
D
D
N
1
-10.35
1.60
122.70
112.35
A
A
A
O
C
N
ARG
ARG
ASN
43
43
44
C
C
Y
1
-10.35
1.60
122.70
112.35
A
A
A
O
C
N
ARG
ARG
ASN
43
43
44
D
D
Y
1
5.79
0.90
118.30
124.09
A
A
A
CB
CG
OD1
ASP
ASP
ASP
63
63
63
C
C
C
N
1
5.79
0.90
118.30
124.09
A
A
A
CB
CG
OD1
ASP
ASP
ASP
63
63
63
D
D
D
N
1
-15.41
2.20
117.20
101.79
A
A
A
CA
C
N
ASN
ASN
ALA
68
68
69
C
C
Y
1
-15.41
2.20
117.20
101.79
A
A
A
CA
C
N
ASN
ASN
ALA
68
68
69
D
D
Y
1
11.13
1.60
122.70
133.83
A
A
A
O
C
N
ASN
ASN
ALA
68
68
69
C
C
Y
1
11.13
1.60
122.70
133.83
A
A
A
O
C
N
ASN
ASN
ALA
68
68
69
D
D
Y
1
8.83
1.10
114.20
123.03
A
A
A
CA
CB
SG
CYS
CYS
CYS
121
121
121
A
A
A
N
1
8.83
1.10
114.20
123.03
A
A
A
CA
CB
SG
CYS
CYS
CYS
121
121
121
B
B
B
N
1
-16.03
2.10
128.40
112.37
A
A
A
C
N
CD
TRP
PRO
PRO
125
126
126
C
C
C
Y
1
-16.03
2.10
128.40
112.37
A
A
A
C
N
CD
TRP
PRO
PRO
125
126
126
D
D
D
Y
1
-13.63
2.10
128.40
114.77
A
A
A
C
N
CD
SER
PRO
PRO
205
206
206
C
C
C
Y
1
-13.63
2.10
128.40
114.77
A
A
A
C
N
CD
SER
PRO
PRO
205
206
206
D
D
D
Y
1
7.73
1.10
114.20
121.93
A
A
A
CA
CB
SG
CYS
CYS
CYS
226
226
226
C
C
C
N
1
7.73
1.10
114.20
121.93
A
A
A
CA
CB
SG
CYS
CYS
CYS
226
226
226
D
D
D
N
1
10.85
1.70
111.00
121.85
A
A
A
CB
CG
CD1
LEU
LEU
LEU
234
234
234
C
C
C
N
1
10.85
1.70
111.00
121.85
A
A
A
CB
CG
CD1
LEU
LEU
LEU
234
234
234
D
D
D
N
1
-15.53
2.10
128.40
112.87
A
A
A
C
N
CD
ASP
PRO
PRO
240
241
241
C
C
C
Y
1
-15.53
2.10
128.40
112.87
A
A
A
C
N
CD
ASP
PRO
PRO
240
241
241
D
D
D
Y
1
4.89
0.50
120.30
125.19
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
257
257
257
C
C
C
N
1
4.89
0.50
120.30
125.19
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
257
257
257
D
D
D
N
1
A
A
C
N
ASN
ARG
44
45
-0.176
0.023
1.336
1.160
C
Y
1
A
A
C
N
ASN
ARG
44
45
-0.176
0.023
1.336
1.160
D
Y
1
A
A
CB
SG
CYS
CYS
215
215
-0.099
0.016
1.812
1.713
C
C
N
1
A
A
CB
SG
CYS
CYS
215
215
-0.099
0.016
1.812
1.713
D
D
N
1
A
SER
15
C
-107.47
69.63
1
A
SER
15
D
-107.47
69.63
1
A
ASP
63
C
-57.75
-122.40
1
A
ASP
63
D
-57.75
-122.40
1
A
LYS
103
C
72.00
36.69
1
A
LYS
103
D
72.00
36.69
1
A
GLU
129
C
-36.54
-29.28
1
A
GLU
129
D
-36.54
-29.28
1
A
PRO
180
C
-35.38
165.73
1
A
PRO
180
D
-35.38
165.73
1
A
PRO
185
C
-51.16
178.17
1
A
PRO
185
D
-51.16
178.17
1
A
CYS
215
A
-129.16
-133.42
1
A
CYS
215
B
-129.16
-133.42
1
A
CYS
215
C
-125.15
-101.18
1
A
CYS
215
D
-125.15
-101.18
1
A
ARG
254
C
-58.63
-6.42
1
A
ARG
254
D
-58.63
-6.42
1
A
LEU
260
C
-59.12
107.98
1
A
LEU
260
D
-59.12
107.98
1
A
ILE
261
A
73.59
109.48
1
A
ILE
261
B
73.59
109.48
1
A
ILE
261
C
108.30
87.96
1
A
ILE
261
D
108.30
87.96
1
A
TYR
271
C
-61.94
-70.46
1
A
TYR
271
D
-61.94
-70.46
1
A
LYS
279
C
-58.75
74.79
1
A
LYS
279
D
-58.75
74.79
136.560
45.7267
10.720
0.2210
0.1860
0.1874
2.2120
62.9460
1001
24452
25453
3.9300
99.8900
0.2500
1
THROUGHOUT
1.350
MOLECULAR REPLACEMENT
20.8300
1.1000
1.2000
ML
FLAT BULK SOLVENT MODEL
2.2120
62.9460
153
2507
77.09
47.19
49
0
2305
282
0.021
9227
2.058
12464
0.164
1326
0.014
1616
20.412
3556
0.3141
0.2899
2.3288
139
3431
3570
7
99.0000
0.2795
0.2191
2.4747
143
3425
3568
7
100.0000
0.2002
0.1967
2.6657
146
3462
3608
7
100.0000
0.2483
0.1941
2.9340
141
3457
3598
7
100.0000
0.2124
0.1833
3.3585
142
3495
3637
7
100.0000
0.2288
0.1660
4.2313
142
3518
3660
7
100.0000
0.1867
0.1732
62.9719
148
3664
3812
7
100.0000
37.070
2.210
77.952
5QDW
48274
-3.000
0.997
0.128
0.142
1.078
1
10.240
251441
99.900
1.128
2.210
2.350
1.470
39449
7769
7718
0.507
1.259
1
0
99.300
0.684
2.350
2.510
2.230
36826
7411
7408
0.659
0.766
1
0
100.000
0.496
2.510
2.710
3.360
36530
6824
6823
0.846
0.550
1
0
100.000
0.316
2.710
2.970
5.360
34150
6314
6314
0.932
0.350
1
0
100.000
0.172
2.970
3.320
9.060
30036
5692
5692
0.981
0.192
1
0
100.000
0.090
3.320
3.830
16.210
24288
4982
4976
0.994
0.101
1
0
99.900
0.054
3.830
4.690
26.690
23270
4250
4250
0.998
0.060
1
0
100.000
0.048
4.690
6.610
28.300
17021
3285
3285
0.998
0.053
1
0
100.000
0.032
6.610
77.952
39.310
9871
1810
1808
0.999
0.036
1
0
99.900
refinement
Paul D. Adams
PDAdams@lbl.gov
C++
http://www.phenix-online.org/
PHENIX
package
1.10.1_2155
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html
XSCALE
package
phasing
Randy J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
data extraction
PDB
deposit@deposit.rcsb.org
July. 13, 2016
C++
http://sw-tools.pdb.org/apps/PDB_EXTRACT/
PDB_EXTRACT
package
3.22
data reduction
Wolfgang Kabsch
http://homes.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xds_program.html
XDS
package
Tyrosine-protein phosphatase non-receptor type 1 (E.C.3.1.3.48)
PanDDA analysis group deposition -- Crystal structure of PTP1B in complex with compound_FMOPL000465a
1
N
N
2
N
N
3
N
N
4
N
N
A
GLU
2
A
GLU
2
HELX_P
A
GLY
14
A
GLY
14
1
AA1
13
A
SER
15
A
SER
15
HELX_P
A
ALA
27
A
ALA
27
1
AA2
13
A
SER
32
A
SER
32
HELX_P
A
LEU
37
A
LEU
37
1
AA3
6
A
PRO
38
A
PRO
38
HELX_P
A
ASN
44
A
ASN
44
5
AA4
7
A
THR
91
A
THR
91
HELX_P
A
LYS
103
A
LYS
103
1
AA5
13
A
PRO
188
A
PRO
188
HELX_P
A
SER
201
A
SER
201
1
AA6
14
A
GLY
220
A
GLY
220
HELX_P
A
ARG
238
A
ARG
238
1
AA7
19
A
ASP
240
A
ASP
240
HELX_P
A
VAL
244
A
VAL
244
5
AA8
5
A
ASP
245
A
ASP
245
HELX_P
A
ARG
254
A
ARG
254
1
AA9
10
A
THR
263
A
THR
263
HELX_P
A
MET
282
A
MET
282
1
AB1
20
covale
1.457
none
C
C
A
ASP
240
A
CG
ASP
240
1_555
A
SER
242
A
OG
SER
242
1_555
covale
1.457
none
D
D
A
ASP
240
A
CG
ASP
240
1_555
A
SER
242
A
OG
SER
242
1_555
HYDROLASE
PanDDA, SGC - Diamond I04-1 fragment screening, protein tyrosine phosphatase, PTP, protein tyrosine phosphatase 1B, PTP1B, enzyme, allostery, multiconformer, HYDROLASE
PTN1_HUMAN
UNP
1
1
P18031
MEMEKEFEQIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLHQEDNDYINASLIKMEEAQRS
YILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEMIFEDTNLKLTLISEDIKSYYTVRQLEL
ENLTTQETREILHFHYTTWPDFGVPESPASFLNFLFKVRESGSLSPEHGPVVVHCSAGIGRSGTFCLADTCLLLMDKRKD
PSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAKFIMGDSSVQDQWKELSHEDLEPPPEHIPPPPRPPKRILEPH
N
1
321
5QDW
1
321
P18031
A
1
1
321
1
CYS
engineered mutation
SER
32
5QDW
A
P18031
UNP
32
32
1
CYS
engineered mutation
VAL
92
5QDW
A
P18031
UNP
92
92
9
2
anti-parallel
anti-parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
56
A
ARG
56
A
LYS
58
A
LYS
58
A
TYR
66
A
TYR
66
A
MET
74
A
MET
74
A
ARG
79
A
ARG
79
A
THR
84
A
THR
84
A
VAL
211
A
VAL
211
A
HIS
214
A
HIS
214
A
GLY
106
A
GLY
106
A
MET
109
A
MET
109
A
THR
168
A
THR
168
A
TYR
176
A
TYR
176
A
TYR
153
A
TYR
153
A
ASN
162
A
ASN
162
A
LEU
140
A
LEU
140
A
ILE
149
A
ILE
149
A
MET
133
A
MET
133
A
PHE
135
A
PHE
135
A
MET
114
A
MET
114
A
GLU
115
A
GLU
115
A
SER
118
A
SER
118
A
LEU
119
A
LEU
119
binding site for residue JGJ A 401
A
JGJ
401
Software
4
binding site for residue TRS A 402
A
TRS
402
Software
4
A
SER
146
A
SER
146
4
1_555
A
ASP
148
A
ASP
148
4
1_555
A
VAL
155
A
VAL
155
4
1_555
A
GLN
157
A
GLN
157
4
1_555
A
HIS
54
A
HIS
54
4
1_555
A
LYS
128
A
LYS
128
4
4_455
A
GLU
129
A
GLU
129
4
4_455
A
GLU
130
A
GLU
130
4
4_455
152
P 31 2 1