0.016773 0.000000 0.000000 -0.000000 0.016773 0.000000 0.000000 -0.000000 0.009087 0.000000 0.000000 0.000000 Newman, J.A. Gavard, A.E. Fernandez-Cid, A. Sherestha, L. Burgess-Brown, N.A. von Delft, F. Arrowsmith, C.H. Edwards, A. Bountra, C. Gileadi, O. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 59.620 59.620 110.050 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cd 2 112.411 CADMIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H8 F N O3 197.163 3-(acetylamino)-4-fluorobenzoic acid non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CD N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N C N 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N S N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N Y 252 N C Y 253 N C Y 254 N C Y 255 N C Y 256 N C N 257 N C N 258 N C Y 259 N C N 260 N C N 261 N F N 262 N O N 263 N O N 264 N O N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C Y 278 N C Y 279 N C Y 280 N C Y 281 N C Y 282 N C Y 283 N C N 284 N O N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N N N 297 S C N 298 N C N 299 N O N 300 N C N 301 N C N 302 N C N 303 N O N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N N N 314 S C N 315 N C N 316 N O N 317 N C N 318 N O N 319 N O N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N N N 328 S C N 329 N C N 330 N O N 331 R C N 332 N O N 333 N C N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N N N 345 S C N 346 N C N 347 N O N 348 N C Y 349 N C Y 350 N C Y 351 N C Y 352 N N Y 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C N 358 N O N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N N N 372 S C N 373 N C N 374 N O N 375 N C Y 376 N C Y 377 N C Y 378 N C Y 379 N C Y 380 N C Y 381 N C N 382 N O N 383 N O N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N N N 396 S C N 397 N C N 398 N O N 399 N C N 400 N C N 401 N C N 402 N O N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing Y 237 N doub Y 238 N sing N 239 N sing Y 240 N sing Y 241 N doub N 242 N doub N 243 N sing Y 244 N doub Y 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N doub N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N doub N 266 N sing N 267 N sing N 268 N sing N 269 N sing Y 270 N doub Y 271 N sing Y 272 N sing N 273 N sing Y 274 N doub N 275 N sing Y 276 N doub N 277 N sing Y 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N doub N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing Y 339 N doub Y 340 N sing Y 341 N sing N 342 N sing Y 343 N doub Y 344 N sing Y 345 N sing N 346 N sing Y 347 N sing Y 348 N doub N 349 N sing Y 350 N doub N 351 N sing Y 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N doub N 363 N sing N 364 N sing N 365 N sing N 366 N sing Y 367 N doub Y 368 N sing Y 369 N sing N 370 N sing Y 371 N doub N 372 N sing Y 373 N doub N 374 N sing Y 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing To Be Published 0353 PanDDA analysis group deposition 10.2210/pdb5qrx/pdb pdb_00005qrx 100 1 PIXEL 2018-07-21 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 0.91587 1.0 I04-1 Diamond 0.91587 SYNCHROTRON DIAMOND BEAMLINE I04-1 19597.586 T-box transcription factor T 1 man polymer 112.411 CADMIUM ION 5 syn non-polymer 197.163 3-(acetylamino)-4-fluorobenzoic acid 1 syn non-polymer 18.015 water 72 nat water Brachyury protein,Protein T no no GELRVGLEESELWLRFKELTNEMIVTKNGRRMFPVLKVNVSGLDPNAMYSFLLDFVAADNHRWKYVNGEWVPGGKPEPQA PSCVYIHPDSPNFGAHWMKAPVSFSKVKLTNKLNGGGQIMLNSLHKYEPRIHIVRVGGPQRMITSHCFPETQFIAVTAYQ NEEITALKIKYN GELRVGLEESELWLRFKELTNEMIVTKNGRRMFPVLKVNVSGLDPNAMYSFLLDFVAADNHRWKYVNGEWVPGGKPEPQA PSCVYIHPDSPNFGAHWMKAPVSFSKVKLTNKLNGGGQIMLNSLHKYEPRIHIVRVGGPQRMITSHCFPETQFIAVTAYQ NEEITALKIKYN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 172 TBXT, T 9606 Homo sapiens 562 Escherichia coli Biological sequence 1 2.50 50.70 0.000 VAPOR DIFFUSION, SITTING DROP 4.5 0.1 M CdCl, 0.1 M Acetate pH 4.5, 32% PEG 400 298 pdbx_entity_instance_feature pdbx_entry_details chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn repository Initial release Author supporting evidence Data collection Structure summary Data collection Database references Derived calculations 1 0 2019-07-10 1 1 2019-08-07 1 2 2024-03-06 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_symmetry RCSB Y RCSB 2019-05-25 REL REL Human Brachyury screened against the DSI-poised Fragment Library by X-ray Crystallography at the XChem facility of Diamond Light Source beamline I04-1 PanDDA analysis group deposition changed state 1 A O HOH 471 6.50 1 A O HOH 472 6.89 NZG NZG SUBJECT OF INVESTIGATION CD CADMIUM ION NZG 3-(acetylamino)-4-fluorobenzoic acid HOH water Y CD 1 2 CD CD 301 A CD 2 2 CD CD 302 A CD 3 2 CD CD 303 A CD 4 2 CD CD 304 A CD 5 2 CD CD 305 A LIG 1 3 NZG NZG 306 A HOH 61 4 HOH HOH 401 A HOH 48 4 HOH HOH 402 A HOH 71 4 HOH HOH 403 A HOH 68 4 HOH HOH 404 A HOH 58 4 HOH HOH 405 A HOH 44 4 HOH HOH 406 A HOH 41 4 HOH HOH 407 A HOH 52 4 HOH HOH 408 A HOH 53 4 HOH HOH 409 A HOH 16 4 HOH HOH 410 A HOH 42 4 HOH HOH 411 A HOH 1 4 HOH HOH 412 A HOH 52 4 HOH HOH 413 A HOH 24 4 HOH HOH 414 A HOH 14 4 HOH HOH 415 A HOH 79 4 HOH HOH 416 A HOH 45 4 HOH HOH 417 A HOH 70 4 HOH HOH 418 A HOH 50 4 HOH HOH 419 A HOH 76 4 HOH HOH 420 A HOH 4 4 HOH HOH 421 A HOH 51 4 HOH HOH 422 A HOH 32 4 HOH HOH 423 A HOH 17 4 HOH HOH 424 A HOH 21 4 HOH HOH 425 A HOH 31 4 HOH HOH 426 A HOH 75 4 HOH HOH 427 A HOH 56 4 HOH HOH 428 A HOH 54 4 HOH HOH 429 A HOH 49 4 HOH HOH 430 A HOH 55 4 HOH HOH 431 A HOH 67 4 HOH HOH 432 A HOH 60 4 HOH HOH 433 A HOH 45 4 HOH HOH 434 A HOH 6 4 HOH HOH 435 A HOH 10 4 HOH HOH 436 A HOH 8 4 HOH HOH 437 A HOH 33 4 HOH HOH 438 A HOH 47 4 HOH HOH 439 A HOH 69 4 HOH HOH 440 A HOH 8 4 HOH HOH 441 A HOH 11 4 HOH HOH 442 A HOH 23 4 HOH HOH 443 A HOH 28 4 HOH HOH 444 A HOH 77 4 HOH HOH 445 A HOH 73 4 HOH HOH 446 A HOH 18 4 HOH HOH 447 A HOH 12 4 HOH HOH 448 A HOH 2 4 HOH HOH 449 A HOH 46 4 HOH HOH 450 A HOH 14 4 HOH HOH 451 A HOH 66 4 HOH HOH 452 A HOH 64 4 HOH HOH 453 A HOH 4 4 HOH HOH 454 A HOH 1 4 HOH HOH 455 A HOH 65 4 HOH HOH 456 A HOH 3 4 HOH HOH 457 A HOH 6 4 HOH HOH 458 A HOH 62 4 HOH HOH 459 A HOH 7 4 HOH HOH 460 A HOH 5 4 HOH HOH 461 A HOH 63 4 HOH HOH 462 A HOH 3 4 HOH HOH 463 A HOH 72 4 HOH HOH 464 A HOH 10 4 HOH HOH 465 A HOH 30 4 HOH HOH 466 A HOH 43 4 HOH HOH 467 A HOH 13 4 HOH HOH 468 A HOH 78 4 HOH HOH 469 A HOH 16 4 HOH HOH 470 A HOH 17 4 HOH HOH 471 A HOH 18 4 HOH HOH 472 A n 1 40 A GLU 41 n 2 GLU 41 A LEU 42 n 3 LEU 42 A ARG 43 n 4 ARG 43 A VAL 44 n 5 VAL 44 A GLY 45 n 6 GLY 45 A LEU 46 n 7 LEU 46 A GLU 47 n 8 GLU 47 A GLU 48 n 9 GLU 48 A SER 49 n 10 SER 49 A GLU 50 n 11 GLU 50 A LEU 51 n 12 LEU 51 A TRP 52 n 13 TRP 52 A LEU 53 n 14 LEU 53 A ARG 54 n 15 ARG 54 A PHE 55 n 16 PHE 55 A LYS 56 n 17 LYS 56 A GLU 57 n 18 GLU 57 A LEU 58 n 19 LEU 58 A THR 59 n 20 THR 59 A ASN 60 n 21 ASN 60 A GLU 61 n 22 GLU 61 A MET 62 n 23 MET 62 A ILE 63 n 24 ILE 63 A VAL 64 n 25 VAL 64 A THR 65 n 26 THR 65 A LYS 66 n 27 LYS 66 A ASN 67 n 28 ASN 67 A GLY 68 n 29 GLY 68 A ARG 69 n 30 ARG 69 A ARG 70 n 31 ARG 70 A MET 71 n 32 MET 71 A PHE 72 n 33 PHE 72 A PRO 73 n 34 PRO 73 A VAL 74 n 35 VAL 74 A LEU 75 n 36 LEU 75 A LYS 76 n 37 LYS 76 A VAL 77 n 38 VAL 77 A ASN 78 n 39 ASN 78 A VAL 79 n 40 VAL 79 A SER 80 n 41 SER 80 A GLY 81 n 42 GLY 81 A LEU 82 n 43 LEU 82 A ASP 83 n 44 ASP 83 A PRO 84 n 45 PRO 84 A ASN 85 n 46 ASN 85 A ALA 86 n 47 ALA 86 A MET 87 n 48 MET 87 A TYR 88 n 49 TYR 88 A SER 89 n 50 SER 89 A PHE 90 n 51 PHE 90 A LEU 91 n 52 LEU 91 A LEU 92 n 53 LEU 92 A ASP 93 n 54 ASP 93 A PHE 94 n 55 PHE 94 A VAL 95 n 56 VAL 95 A ALA 96 n 57 ALA 96 A ALA 97 n 58 ALA 97 A ASP 98 n 59 ASP 98 A ASN 99 n 60 ASN 99 A HIS 100 n 61 HIS 100 A ARG 101 n 62 ARG 101 A TRP 102 n 63 TRP 102 A LYS 103 n 64 LYS 103 A TYR 104 n 65 TYR 104 A VAL 105 n 66 VAL 105 A ASN 106 n 67 ASN 106 A GLY 107 n 68 GLY 107 A GLU 108 n 69 GLU 108 A TRP 109 n 70 TRP 109 A VAL 110 n 71 VAL 110 A PRO 111 n 72 PRO 111 A GLY 112 n 73 GLY 112 A GLY 113 n 74 GLY 113 A LYS 114 n 75 LYS 114 A PRO 115 n 76 PRO 115 A GLU 116 n 77 GLU 116 A PRO 117 n 78 PRO 117 A GLN 118 n 79 GLN 118 A ALA 119 n 80 ALA 119 A PRO 120 n 81 PRO 120 A SER 121 n 82 SER 121 A CYS 122 n 83 CYS 122 A VAL 123 n 84 VAL 123 A TYR 124 n 85 TYR 124 A ILE 125 n 86 ILE 125 A HIS 126 n 87 HIS 126 A PRO 127 n 88 PRO 127 A ASP 128 n 89 ASP 128 A SER 129 n 90 SER 129 A PRO 130 n 91 PRO 130 A ASN 131 n 92 ASN 131 A PHE 132 n 93 PHE 132 A GLY 133 n 94 GLY 133 A ALA 134 n 95 ALA 134 A HIS 135 n 96 HIS 135 A TRP 136 n 97 TRP 136 A MET 137 n 98 MET 137 A LYS 138 n 99 LYS 138 A ALA 139 n 100 ALA 139 A PRO 140 n 101 PRO 140 A VAL 141 n 102 VAL 141 A SER 142 n 103 SER 142 A PHE 143 n 104 PHE 143 A SER 144 n 105 SER 144 A LYS 145 n 106 LYS 145 A VAL 146 n 107 VAL 146 A LYS 147 n 108 LYS 147 A LEU 148 n 109 LEU 148 A THR 149 n 110 THR 149 A ASN 150 n 111 ASN 150 A LYS 151 n 112 LYS 151 A LEU 152 n 113 LEU 152 A ASN 153 n 114 ASN 153 A GLY 154 n 115 GLY 154 A GLY 155 n 116 GLY 155 A GLY 156 n 117 GLY 156 A GLN 157 n 118 GLN 157 A ILE 158 n 119 ILE 158 A MET 159 n 120 MET 159 A LEU 160 n 121 LEU 160 A ASN 161 n 122 ASN 161 A SER 162 n 123 SER 162 A LEU 163 n 124 LEU 163 A HIS 164 n 125 HIS 164 A LYS 165 n 126 LYS 165 A TYR 166 n 127 TYR 166 A GLU 167 n 128 GLU 167 A PRO 168 n 129 PRO 168 A ARG 169 n 130 ARG 169 A ILE 170 n 131 ILE 170 A HIS 171 n 132 HIS 171 A ILE 172 n 133 ILE 172 A VAL 173 n 134 VAL 173 A ARG 174 n 135 ARG 174 A VAL 175 n 136 VAL 175 A GLY 176 n 137 GLY 176 A GLY 177 n 138 GLY 177 A PRO 178 n 139 PRO 178 A GLN 179 n 140 GLN 179 A ARG 180 n 141 ARG 180 A MET 181 n 142 MET 181 A ILE 182 n 143 ILE 182 A THR 183 n 144 THR 183 A SER 184 n 145 SER 184 A HIS 185 n 146 HIS 185 A CYS 186 n 147 CYS 186 A PHE 187 n 148 PHE 187 A PRO 188 n 149 PRO 188 A GLU 189 n 150 GLU 189 A THR 190 n 151 THR 190 A GLN 191 n 152 GLN 191 A PHE 192 n 153 PHE 192 A ILE 193 n 154 ILE 193 A ALA 194 n 155 ALA 194 A VAL 195 n 156 VAL 195 A THR 196 n 157 THR 196 A ALA 197 n 158 ALA 197 A TYR 198 n 159 TYR 198 A GLN 199 n 160 GLN 199 A ASN 200 n 161 ASN 200 A GLU 201 n 162 GLU 201 A GLU 202 n 163 GLU 202 A ILE 203 n 164 ILE 203 A THR 204 n 165 THR 204 A ALA 205 n 166 ALA 205 A LEU 206 n 167 LEU 206 A LYS 207 n 168 LYS 207 A ILE 208 n 169 ILE 208 A LYS 209 n 170 LYS 209 A TYR 210 n 171 TYR 210 A ASN 211 n 172 ASN 211 A author_defined_assembly 1 monomeric A HIS 100 A NE2 HIS 61 1_555 A CD 304 E CD CD 1_555 A HOH 458 H O HOH 1_555 105.3 A HIS 100 A NE2 HIS 61 1_555 A CD 304 E CD CD 1_555 A HOH 460 H O HOH 1_555 96.4 A HOH 458 H O HOH 1_555 A CD 304 E CD CD 1_555 A HOH 460 H O HOH 1_555 114.7 A HIS 100 A NE2 HIS 61 1_555 A CD 304 E CD CD 1_555 A HOH 461 H O HOH 1_555 109.8 A HOH 458 H O HOH 1_555 A CD 304 E CD CD 1_555 A HOH 461 H O HOH 1_555 115.5 A HOH 460 H O HOH 1_555 A CD 304 E CD CD 1_555 A HOH 461 H O HOH 1_555 113.0 A CYS 122 A SG CYS 83 1_555 A CD 303 D CD CD 1_555 A HOH 445 H O HOH 1_555 96.9 A CYS 122 A SG CYS 83 1_555 A CD 305 F CD CD 1_555 A HOH 448 H O HOH 1_555 97.0 A GLU 167 A OE1 GLU 128 1_555 A CD 301 B CD CD 1_555 A GLU 167 A OE1 GLU 128 1_555 0.0 A GLU 167 A OE1 GLU 128 1_555 A CD 301 B CD CD 1_555 A CYS 186 A A SG CYS 147 1_555 92.7 A GLU 167 A OE1 GLU 128 1_555 A CD 301 B CD CD 1_555 A CYS 186 A A SG CYS 147 1_555 92.7 A GLU 167 A OE1 GLU 128 1_555 A CD 301 B CD CD 1_555 A CYS 186 B A SG CYS 147 1_555 88.7 A GLU 167 A OE1 GLU 128 1_555 A CD 301 B CD CD 1_555 A CYS 186 B A SG CYS 147 1_555 88.7 A CYS 186 A A SG CYS 147 1_555 A CD 301 B CD CD 1_555 A CYS 186 B A SG CYS 147 1_555 38.6 A GLU 167 A OE1 GLU 128 1_555 A CD 301 B CD CD 1_555 A CYS 186 A A SG CYS 147 1_555 92.7 A GLU 167 A OE1 GLU 128 1_555 A CD 301 B CD CD 1_555 A CYS 186 A A SG CYS 147 1_555 92.7 A CYS 186 A A SG CYS 147 1_555 A CD 301 B CD CD 1_555 A CYS 186 A A SG CYS 147 1_555 0.0 A CYS 186 B A SG CYS 147 1_555 A CD 301 B CD CD 1_555 A CYS 186 A A SG CYS 147 1_555 38.6 A GLU 167 A OE1 GLU 128 1_555 A CD 301 B CD CD 1_555 A CYS 186 B A SG CYS 147 1_555 88.7 A GLU 167 A OE1 GLU 128 1_555 A CD 301 B CD CD 1_555 A CYS 186 B A SG CYS 147 1_555 88.7 A CYS 186 A A SG CYS 147 1_555 A CD 301 B CD CD 1_555 A CYS 186 B A SG CYS 147 1_555 38.6 A CYS 186 B A SG CYS 147 1_555 A CD 301 B CD CD 1_555 A CYS 186 B A SG CYS 147 1_555 0.0 A CYS 186 A A SG CYS 147 1_555 A CD 301 B CD CD 1_555 A CYS 186 B A SG CYS 147 1_555 38.6 A GLU 167 A OE1 GLU 128 1_555 A CD 301 B CD CD 1_555 A HOH 455 H O HOH 1_555 91.0 A GLU 167 A OE1 GLU 128 1_555 A CD 301 B CD CD 1_555 A HOH 455 H O HOH 1_555 91.0 A CYS 186 A A SG CYS 147 1_555 A CD 301 B CD CD 1_555 A HOH 455 H O HOH 1_555 75.8 A CYS 186 B A SG CYS 147 1_555 A CD 301 B CD CD 1_555 A HOH 455 H O HOH 1_555 114.2 A CYS 186 A A SG CYS 147 1_555 A CD 301 B CD CD 1_555 A HOH 455 H O HOH 1_555 75.8 A CYS 186 B A SG CYS 147 1_555 A CD 301 B CD CD 1_555 A HOH 455 H O HOH 1_555 114.2 A GLU 167 A OE1 GLU 128 1_555 A CD 301 B CD CD 1_555 A HOH 455 H O HOH 5_655 96.8 A GLU 167 A OE1 GLU 128 1_555 A CD 301 B CD CD 1_555 A HOH 455 H O HOH 5_655 96.8 A CYS 186 A A SG CYS 147 1_555 A CD 301 B CD CD 1_555 A HOH 455 H O HOH 5_655 114.5 A CYS 186 B A SG CYS 147 1_555 A CD 301 B CD CD 1_555 A HOH 455 H O HOH 5_655 152.9 A CYS 186 A A SG CYS 147 1_555 A CD 301 B CD CD 1_555 A HOH 455 H O HOH 5_655 114.5 A CYS 186 B A SG CYS 147 1_555 A CD 301 B CD CD 1_555 A HOH 455 H O HOH 5_655 152.9 A HOH 455 H O HOH 1_555 A CD 301 B CD CD 1_555 A HOH 455 H O HOH 5_655 39.5 A GLU 167 A OE1 GLU 128 1_555 A CD 302 C CD CD 1_555 A GLU 167 A OE2 GLU 128 1_555 51.0 A GLU 167 A OE1 GLU 128 1_555 A CD 302 C CD CD 1_555 A CYS 186 A A SG CYS 147 1_555 30.9 A GLU 167 A OE2 GLU 128 1_555 A CD 302 C CD CD 1_555 A CYS 186 A A SG CYS 147 1_555 76.3 A GLU 167 A OE1 GLU 128 1_555 A CD 302 C CD CD 1_555 A CYS 186 B A SG CYS 147 1_555 43.7 A GLU 167 A OE2 GLU 128 1_555 A CD 302 C CD CD 1_555 A CYS 186 B A SG CYS 147 1_555 80.7 A CYS 186 A A SG CYS 147 1_555 A CD 302 C CD CD 1_555 A CYS 186 B A SG CYS 147 1_555 16.1 A GLU 167 A OE1 GLU 128 1_555 A CD 302 C CD CD 1_555 A HOH 454 H O HOH 5_655 139.7 A GLU 167 A OE2 GLU 128 1_555 A CD 302 C CD CD 1_555 A HOH 454 H O HOH 5_655 103.9 A CYS 186 A A SG CYS 147 1_555 A CD 302 C CD CD 1_555 A HOH 454 H O HOH 5_655 125.7 A CYS 186 B A SG CYS 147 1_555 A CD 302 C CD CD 1_555 A HOH 454 H O HOH 5_655 109.7 A GLU 167 A OE1 GLU 128 1_555 A CD 302 C CD CD 1_555 A HOH 457 H O HOH 1_555 107.9 A GLU 167 A OE2 GLU 128 1_555 A CD 302 C CD CD 1_555 A HOH 457 H O HOH 1_555 101.3 A CYS 186 A A SG CYS 147 1_555 A CD 302 C CD CD 1_555 A HOH 457 H O HOH 1_555 125.5 A CYS 186 B A SG CYS 147 1_555 A CD 302 C CD CD 1_555 A HOH 457 H O HOH 1_555 140.5 A HOH 454 H O HOH 5_655 A CD 302 C CD CD 1_555 A HOH 457 H O HOH 1_555 108.0 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N GLY 45 A N GLY 6 A O ASN 78 A O ASN 39 A N VAL 77 A N VAL 38 A O VAL 141 A O VAL 102 A N MET 62 A N MET 23 A O VAL 195 A O VAL 156 A O PHE 192 A O PHE 153 A N TYR 166 A N TYR 127 A O ARG 169 A O ARG 130 A N ASP 93 A N ASP 54 A N TYR 88 A N TYR 49 A O ASN 131 A O ASN 92 A O TYR 124 A O TYR 85 A N LEU 92 A N LEU 53 A N ASP 93 A N ASP 54 A O ARG 169 A O ARG 130 A N ILE 172 A N ILE 133 A O THR 183 A O THR 144 A N ARG 69 A N ARG 30 A O LEU 148 A O LEU 109 A N THR 149 A N THR 110 A O ILE 158 A O ILE 119 A N VAL 105 A N VAL 66 A O GLU 108 A O GLU 69 1 A CD 301 B CD 1 A HOH 417 H HOH 1 A CG ARG 43 A CG ARG 4 1 Y 1 A CD ARG 43 A CD ARG 4 1 Y 1 A NE ARG 43 A NE ARG 4 1 Y 1 A CZ ARG 43 A CZ ARG 4 1 Y 1 A NH1 ARG 43 A NH1 ARG 4 1 Y 1 A NH2 ARG 43 A NH2 ARG 4 1 Y 1 A GLY 40 A GLY 1 1 Y 1 A THR 59 68.96 105.52 1 A PHE 143 -96.43 52.39 114.320 46.6090 24.980 2.1900 -0.0000 -0.0000 2.1900 -0.0000 -4.3700 0.9630 0.9320 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY 0.2724 0.2092 0.2119 1.8700 40.4700 816 16169 4.8000 99.3300 5.6950 0.1560 RANDOM 1 THROUGHOUT 0.000 FOURIER SYNTHESIS 0.1700 0.1680 0.8000 0.8000 1.2000 6f58 MAXIMUM LIKELIHOOD MASK 1.8700 40.4700 72 1459 54.87 50.14 18 0 1369 172 0.007 0.013 1840 0.001 0.017 1495 1.444 1.640 2296 1.275 1.566 3475 7.453 5.000 204 29.807 22.289 83 17.321 15.000 271 12.493 15.000 7 0.068 0.200 203 0.007 0.020 1924 0.001 0.020 377 3.921 4.706 856 3.899 4.700 855 5.964 7.116 1004 0.3840 0.3670 1.9190 58 1156 1214 20 98.8600 1.870 40.440 5QRX 17026 0.999 0.106 0.031 0.111 1 13.000 215463 12.700 1 99.400 2.796 1.870 1.920 15987 1218 0.700 0.798 2.910 1 1.200 13.100 99.000 0.047 8.360 40.440 2583 248 0.999 0.015 0.049 1 39.300 10.400 99.300 refinement Garib N. Murshudov garib@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/refmac5.html REFMAC program 5.8.0238 data scaling Phil Evans 27/03/18 http://www.mrc-lmb.cam.ac.uk/harry/pre/aimless.html Aimless program 0.7.1 data extraction PDB deposit@deposit.rcsb.org SEP. 23, 2016 C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ PDB_EXTRACT package 3.23 data reduction XDS program phasing REFMAC program PanDDA analysis group deposition -- Crystal Structure of human Brachyury in complex with Z364328788 1 N N 2 N N 2 N N 2 N N 2 N N 2 N N 3 N N 4 N N A GLU 48 A GLU 9 HELX_P A LEU 58 A LEU 19 1 AA1 11 A GLY 133 A GLY 94 HELX_P A ALA 139 A ALA 100 1 AA2 7 A PRO 188 A PRO 149 HELX_P A GLN 191 A GLN 152 5 AA3 4 A ASN 200 A ASN 161 HELX_P A ASN 211 A ASN 172 1 AA4 12 metalc 2.259 A HIS 100 A NE2 HIS 61 1_555 A CD 304 E CD CD 1_555 metalc 2.744 A CYS 122 A SG CYS 83 1_555 A CD 303 D CD CD 1_555 metalc 2.422 A CYS 122 A SG CYS 83 1_555 A CD 305 F CD CD 1_555 metalc 2.471 A GLU 167 A OE1 GLU 128 1_555 A CD 301 B CD CD 1_555 metalc 2.471 A GLU 167 A OE1 GLU 128 1_555 A CD 301 B CD CD 5_655 metalc 2.625 A GLU 167 A OE1 GLU 128 1_555 A CD 302 C CD CD 1_555 metalc 2.399 A GLU 167 A OE2 GLU 128 1_555 A CD 302 C CD CD 1_555 metalc 2.520 A A CYS 186 A SG CYS 147 1_555 A CD 301 B CD CD 1_555 metalc 2.469 B A CYS 186 A SG CYS 147 1_555 A CD 301 B CD CD 1_555 metalc 2.520 A A CYS 186 A SG CYS 147 1_555 A CD 301 B CD CD 5_655 metalc 2.469 B A CYS 186 A SG CYS 147 1_555 A CD 301 B CD CD 5_655 metalc 2.575 A A CYS 186 A SG CYS 147 1_555 A CD 302 C CD CD 5_655 metalc 2.459 B A CYS 186 A SG CYS 147 1_555 A CD 302 C CD CD 5_655 metalc 2.219 A CD 301 B CD CD 1_555 A HOH 455 H O HOH 1_555 metalc 2.219 A CD 301 B CD CD 1_555 A HOH 455 H O HOH 5_655 metalc 2.279 A CD 302 C CD CD 1_555 A HOH 454 H O HOH 5_655 metalc 2.362 A CD 302 C CD CD 1_555 A HOH 457 H O HOH 1_555 metalc 2.469 A CD 303 D CD CD 1_555 A HOH 445 H O HOH 1_555 metalc 2.176 A CD 304 E CD CD 1_555 A HOH 458 H O HOH 1_555 metalc 2.546 A CD 304 E CD CD 1_555 A HOH 460 H O HOH 1_555 metalc 2.153 A CD 304 E CD CD 1_555 A HOH 461 H O HOH 1_555 metalc 2.587 A CD 305 F CD CD 1_555 A HOH 448 H O HOH 1_555 TRANSCRIPTION SGC - Diamond I04-1 fragment screening, PanDDA, XChemExplorer, TRANSCRIPTION A PHE 72 A PHE 33 1 A PRO 73 A PRO 34 -5.96 A SER 129 A SER 90 1 A PRO 130 A PRO 91 -13.80 TBXT_HUMAN UNP 1 41 O15178 ELRVGLEESELWLRFKELTNEMIVTKNGRRMFPVLKVNVSGLDPNAMYSFLLDFVAADNHRWKYVNGEWVPGGKPEPQAP SCVYIHPDSPNFGAHWMKAPVSFSKVKLTNKLNGGGQIMLNSLHKYEPRIHIVRVGGPQRMITSHCFPETQFIAVTAYQN EEITALKIKYN 41 211 5QRX 41 211 O15178 A 1 2 172 1 expression tag GLY 40 5QRX A O15178 UNP 1 3 5 4 3 2 anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel A ARG 43 A ARG 4 A LEU 46 A LEU 7 A LYS 76 A LYS 37 A SER 80 A SER 41 A VAL 141 A VAL 102 A SER 142 A SER 103 A GLU 61 A GLU 22 A ILE 63 A ILE 24 A PHE 192 A PHE 153 A VAL 195 A VAL 156 A LYS 165 A LYS 126 A ARG 174 A ARG 135 A MET 87 A MET 48 A ALA 96 A ALA 57 A ASN 131 A ASN 92 A PHE 132 A PHE 93 A TYR 124 A TYR 85 A ILE 125 A ILE 86 A MET 87 A MET 48 A ALA 96 A ALA 57 A LYS 165 A LYS 126 A ARG 174 A ARG 135 A MET 181 A MET 142 A CYS 186 A CYS 147 A ARG 69 A ARG 30 A ARG 70 A ARG 31 A LYS 147 A LYS 108 A THR 149 A THR 110 A ILE 158 A ILE 119 A MET 159 A MET 120 A TRP 102 A TRP 63 A VAL 105 A VAL 66 A GLU 108 A GLU 69 A PRO 111 A PRO 72 binding site for residue CD A 301 A CD 301 Software 8 binding site for residue CD A 302 A CD 302 Software 6 binding site for residue CD A 303 A CD 303 Software 4 binding site for residue CD A 304 A CD 304 Software 5 binding site for residue CD A 305 A CD 305 Software 4 binding site for residue NZG A 306 A NZG 306 Software 8 A GLU 167 A GLU 128 8 1_555 A GLU 167 A GLU 128 8 5_655 A CYS 186 A CYS 147 8 1_555 A CYS 186 A CYS 147 8 5_655 A CD 302 C CD 8 5_655 A CD 302 C CD 8 1_555 A HOH 455 H HOH 8 5_655 A HOH 455 H HOH 8 1_555 A GLU 167 A GLU 128 6 1_555 A CYS 186 A CYS 147 6 5_655 A CD 301 B CD 6 5_655 A CD 301 B CD 6 1_555 A HOH 454 H HOH 6 5_655 A HOH 457 H HOH 6 1_555 A CYS 122 A CYS 83 4 1_555 A HOH 443 H HOH 4 1_555 A HOH 445 H HOH 4 1_555 A HOH 471 H HOH 4 1_555 A LEU 91 A LEU 52 5 5_655 A HIS 100 A HIS 61 5 1_555 A HOH 458 H HOH 5 1_555 A HOH 460 H HOH 5 1_555 A HOH 461 H HOH 5 1_555 A CYS 122 A CYS 83 4 1_555 A HOH 448 H HOH 4 1_555 A HOH 471 H HOH 4 1_555 A HOH 472 H HOH 4 1_555 A SER 89 A SER 50 8 1_555 A LEU 91 A LEU 52 8 1_555 A ILE 125 A ILE 86 8 1_555 A SER 129 A SER 90 8 1_555 A PRO 130 A PRO 91 8 1_555 A PHE 132 A PHE 93 8 6_555 A ARG 180 A ARG 141 8 1_555 A HOH 468 H HOH 8 1_555 91 P 41 2 2