0.025431 0.000000 0.000000 0.000000 0.025431 0.000000 0.000000 0.000000 0.006776 0.00000 0.00000 0.00000 Singh, N. Local, A. Shiau, A. Ren, B. Corbett, K.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 39.321 39.321 147.571 C3 H7 N O2 89.093 y ALANINE L-peptide linking C8 H16 N2 O3 188.224 n N(6)-ACETYLLYSINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C6 H14 O2 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N O N 15 N C N 16 N C N 17 N N N 18 N C N 19 N C N 20 N C N 21 N C N 22 S C N 23 N N N 24 N C N 25 N O N 26 N O N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N N N 44 S C N 45 N C N 46 N O N 47 N C N 48 N C N 49 N C N 50 N N N 51 N C N 52 N N N 53 N N N 54 N O N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N N N 71 S C N 72 N C N 73 N O N 74 N C N 75 N C N 76 N O N 77 N N N 78 N O N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N N N 88 S C N 89 N C N 90 N O N 91 N C N 92 N C N 93 N O N 94 N O N 95 N O N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N N N 104 R C N 105 N C N 106 N O N 107 N C N 108 N S N 109 N O N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N N N 118 S C N 119 N C N 120 N O N 121 N C N 122 N C N 123 N C N 124 N O N 125 N N N 126 N O N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C N 142 N C N 143 N C N 144 N O N 145 N O N 146 N O N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N N N 157 N C N 158 N C N 159 N O N 160 N O N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N N N 167 S C N 168 N C N 169 N O N 170 N C Y 171 N C Y 172 N N Y 173 N C Y 174 N C Y 175 N N N 176 N O N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N O N 188 N H N 189 N H N 190 N N N 191 S C N 192 N C N 193 N O N 194 S C N 195 N C N 196 N C N 197 N C N 198 N O N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N N N 213 S C N 214 N C N 215 N O N 216 N C N 217 N C N 218 N C N 219 N C N 220 N O N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N N N 235 S C N 236 N C N 237 N O N 238 N C N 239 N C N 240 N C N 241 N C N 242 N N N 243 N O N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N N N 260 S C N 261 N C N 262 N O N 263 N C N 264 N C N 265 N S N 266 N C N 267 N O N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N C N 280 N C N 281 N O N 282 N C N 283 N C N 284 S C N 285 N O N 286 N C N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N N N 302 S C N 303 N C N 304 N O N 305 N C Y 306 N C Y 307 N C Y 308 N C Y 309 N C Y 310 N C Y 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N N N 325 S C N 326 N C N 327 N O N 328 N C N 329 N C N 330 N C N 331 N O N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N N N 342 S C N 343 N C N 344 N O N 345 N C N 346 N O N 347 N O N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N N N 356 S C N 357 N C N 358 N O N 359 R C N 360 N O N 361 N C N 362 N O N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N N N 373 S C N 374 N C N 375 N O N 376 N C Y 377 N C Y 378 N C Y 379 N C Y 380 N N Y 381 N C Y 382 N C Y 383 N C Y 384 N C Y 385 N C N 386 N O N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N N N 400 S C N 401 N C N 402 N O N 403 N C Y 404 N C Y 405 N C Y 406 N C Y 407 N C Y 408 N C Y 409 N C N 410 N O N 411 N O N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N N N 424 S C N 425 N C N 426 N O N 427 N C N 428 N C N 429 N C N 430 N O N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N H N 439 N H N 440 N H N 441 N H N 442 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N doub N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N doub N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N doub N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N doub N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N doub N 164 N sing N 165 N sing N 166 N sing N 167 N sing Y 168 N sing Y 169 N doub Y 170 N doub N 171 N sing Y 172 N sing N 173 N sing Y 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N doub N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N doub N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N doub N 293 N sing N 294 N sing N 295 N sing N 296 N sing Y 297 N doub Y 298 N sing Y 299 N sing N 300 N sing Y 301 N doub N 302 N sing Y 303 N doub N 304 N sing Y 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N doub N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N doub N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N doub N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing Y 366 N doub Y 367 N sing Y 368 N sing N 369 N sing Y 370 N doub Y 371 N sing Y 372 N sing N 373 N sing Y 374 N sing Y 375 N doub N 376 N sing Y 377 N doub N 378 N sing Y 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N doub N 390 N sing N 391 N sing N 392 N sing N 393 N sing Y 394 N doub Y 395 N sing Y 396 N sing N 397 N sing Y 398 N doub N 399 N sing Y 400 N doub N 401 N sing Y 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N doub N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing US Nat. Genet. 9999 1546-1718 50 73 82 10.1038/s41588-017-0015-6 29255264 Identification of H3K4me1-associated proteins at mammalian enhancers. 2018 0000-0001-5854-2388 0000-0002-2829-1546 0000-0002-5435-1127 10.2210/pdb5szb/pdb pdb_00005szb 100 1 Mirror: Rh coated flat, toroidal focusing PIXEL 2016-06-14 DECTRIS PILATUS 6M Si(111) and Si(220) double crystal SINGLE WAVELENGTH M x-ray 1 0.97946 1.0 BL9-2 SSRL 0.97946 SYNCHROTRON SSRL BEAMLINE BL9-2 12881.659 Zinc finger protein DPF3 double-PHD domain (UNP residues 254-368) 1 man polymer 1990.315 Histone H3 tail peptide 1 syn polymer 65.409 ZINC ION 4 syn non-polymer 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL 1 syn non-polymer 18.015 water 177 nat water BRG1-associated factor 45C,BAF45C,Zinc finger protein cer-d4 no no GTVIPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLF CDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK GTVIPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLF CDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK A polypeptide(L) no yes ARTKQTARKSTGG(ALY)APRK ARTKQTARKSTGGKAPRK H polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 115 DPF3, BAF45C, CERD4 9606 Homo sapiens 562 Escherichia coli Biological sequence 1 1.92 35.86 VAPOR DIFFUSION, HANGING DROP 7.5 1.2 M tri-sodium citrate, 0.1 M HEPES pH 7.5, 4% MPD 293 citation citation_author struct_keywords atom_site chem_comp_atom chem_comp_bond database_2 struct_conn struct_conn_type repository Initial release Data collection Database references Structure summary Atomic model Data collection Database references Derived calculations 1 0 2017-08-16 1 1 2019-02-27 2 0 2023-11-15 _citation.country _citation.journal_abbrev _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _struct_keywords.text _atom_site.auth_atom_id _atom_site.label_atom_id _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id N RCSB Y RCSB 2016-08-13 REL REL 1 A O HOH 658 6.28 1 A O HOH 659 6.87 ZN ZINC ION MPD (4S)-2-METHYL-2,4-PENTANEDIOL HOH water 9606 Human Homo sapiens sample 1 18 ZN 15 3 ZN ZN 401 A ZN 16 3 ZN ZN 402 A ZN 17 3 ZN ZN 403 A ZN 18 3 ZN ZN 404 A MPD 1 4 MPD MPD 405 A HOH 143 5 HOH HOH 501 A HOH 55 5 HOH HOH 502 A HOH 42 5 HOH HOH 503 A HOH 91 5 HOH HOH 504 A HOH 44 5 HOH HOH 505 A HOH 72 5 HOH HOH 506 A HOH 31 5 HOH HOH 507 A HOH 134 5 HOH HOH 508 A HOH 125 5 HOH HOH 509 A HOH 48 5 HOH HOH 510 A HOH 40 5 HOH HOH 511 A HOH 101 5 HOH HOH 512 A HOH 83 5 HOH HOH 513 A HOH 77 5 HOH HOH 514 A HOH 37 5 HOH HOH 515 A HOH 38 5 HOH HOH 516 A HOH 86 5 HOH HOH 517 A HOH 34 5 HOH HOH 518 A HOH 99 5 HOH HOH 519 A HOH 19 5 HOH HOH 520 A HOH 88 5 HOH HOH 521 A HOH 64 5 HOH HOH 522 A HOH 16 5 HOH HOH 523 A HOH 76 5 HOH HOH 524 A HOH 115 5 HOH HOH 525 A HOH 13 5 HOH HOH 526 A HOH 62 5 HOH HOH 527 A HOH 26 5 HOH HOH 528 A HOH 1 5 HOH HOH 529 A HOH 58 5 HOH HOH 530 A HOH 3 5 HOH HOH 531 A HOH 35 5 HOH HOH 532 A HOH 41 5 HOH HOH 533 A HOH 142 5 HOH HOH 534 A HOH 5 5 HOH HOH 535 A HOH 65 5 HOH HOH 536 A HOH 103 5 HOH HOH 537 A HOH 60 5 HOH HOH 538 A HOH 81 5 HOH HOH 539 A HOH 140 5 HOH HOH 540 A HOH 179 5 HOH HOH 541 A HOH 18 5 HOH HOH 542 A HOH 21 5 HOH HOH 543 A HOH 153 5 HOH HOH 544 A HOH 25 5 HOH HOH 545 A HOH 96 5 HOH HOH 546 A HOH 43 5 HOH HOH 547 A HOH 173 5 HOH HOH 548 A HOH 2 5 HOH HOH 549 A HOH 17 5 HOH HOH 550 A HOH 14 5 HOH HOH 551 A HOH 11 5 HOH HOH 552 A HOH 128 5 HOH HOH 553 A HOH 49 5 HOH HOH 554 A HOH 80 5 HOH HOH 555 A HOH 39 5 HOH HOH 556 A HOH 15 5 HOH HOH 557 A HOH 9 5 HOH HOH 558 A HOH 33 5 HOH HOH 559 A HOH 85 5 HOH HOH 560 A HOH 139 5 HOH HOH 561 A HOH 175 5 HOH HOH 562 A HOH 57 5 HOH HOH 563 A HOH 136 5 HOH HOH 564 A HOH 4 5 HOH HOH 565 A HOH 111 5 HOH HOH 566 A HOH 157 5 HOH HOH 567 A HOH 29 5 HOH HOH 568 A HOH 12 5 HOH HOH 569 A HOH 70 5 HOH HOH 570 A HOH 74 5 HOH HOH 571 A HOH 73 5 HOH HOH 572 A HOH 126 5 HOH HOH 573 A HOH 24 5 HOH HOH 574 A HOH 177 5 HOH HOH 575 A HOH 54 5 HOH HOH 576 A HOH 130 5 HOH HOH 577 A HOH 151 5 HOH HOH 578 A HOH 63 5 HOH HOH 579 A HOH 172 5 HOH HOH 580 A HOH 71 5 HOH HOH 581 A HOH 90 5 HOH HOH 582 A HOH 129 5 HOH HOH 583 A HOH 166 5 HOH HOH 584 A HOH 98 5 HOH HOH 585 A HOH 8 5 HOH HOH 586 A HOH 6 5 HOH HOH 587 A HOH 180 5 HOH HOH 588 A HOH 32 5 HOH HOH 589 A HOH 112 5 HOH HOH 590 A HOH 23 5 HOH HOH 591 A HOH 10 5 HOH HOH 592 A HOH 22 5 HOH HOH 593 A HOH 110 5 HOH HOH 594 A HOH 159 5 HOH HOH 595 A HOH 170 5 HOH HOH 596 A HOH 145 5 HOH HOH 597 A HOH 30 5 HOH HOH 598 A HOH 131 5 HOH HOH 599 A HOH 160 5 HOH HOH 600 A HOH 109 5 HOH HOH 601 A HOH 122 5 HOH HOH 602 A HOH 119 5 HOH HOH 603 A HOH 164 5 HOH HOH 604 A HOH 176 5 HOH HOH 605 A HOH 61 5 HOH HOH 606 A HOH 181 5 HOH HOH 607 A HOH 92 5 HOH HOH 608 A HOH 51 5 HOH HOH 609 A HOH 168 5 HOH HOH 610 A HOH 45 5 HOH HOH 611 A HOH 95 5 HOH HOH 612 A HOH 79 5 HOH HOH 613 A HOH 135 5 HOH HOH 614 A HOH 158 5 HOH HOH 615 A HOH 141 5 HOH HOH 616 A HOH 78 5 HOH HOH 617 A HOH 20 5 HOH HOH 618 A HOH 47 5 HOH HOH 619 A HOH 84 5 HOH HOH 620 A HOH 121 5 HOH HOH 621 A HOH 118 5 HOH HOH 622 A HOH 107 5 HOH HOH 623 A HOH 28 5 HOH HOH 624 A HOH 174 5 HOH HOH 625 A HOH 155 5 HOH HOH 626 A HOH 50 5 HOH HOH 627 A HOH 82 5 HOH HOH 628 A HOH 150 5 HOH HOH 629 A HOH 106 5 HOH HOH 630 A HOH 156 5 HOH HOH 631 A HOH 102 5 HOH HOH 632 A HOH 52 5 HOH HOH 633 A HOH 163 5 HOH HOH 634 A HOH 69 5 HOH HOH 635 A HOH 147 5 HOH HOH 636 A HOH 27 5 HOH HOH 637 A HOH 127 5 HOH HOH 638 A HOH 36 5 HOH HOH 639 A HOH 162 5 HOH HOH 640 A HOH 178 5 HOH HOH 641 A HOH 169 5 HOH HOH 642 A HOH 75 5 HOH HOH 643 A HOH 171 5 HOH HOH 644 A HOH 105 5 HOH HOH 645 A HOH 93 5 HOH HOH 646 A HOH 89 5 HOH HOH 647 A HOH 7 5 HOH HOH 648 A HOH 97 5 HOH HOH 649 A HOH 137 5 HOH HOH 650 A HOH 116 5 HOH HOH 651 A HOH 67 5 HOH HOH 652 A HOH 120 5 HOH HOH 653 A HOH 154 5 HOH HOH 654 A HOH 123 5 HOH HOH 655 A HOH 148 5 HOH HOH 656 A HOH 104 5 HOH HOH 657 A HOH 124 5 HOH HOH 658 A HOH 161 5 HOH HOH 659 A HOH 56 5 HOH HOH 101 H HOH 152 5 HOH HOH 102 H HOH 138 5 HOH HOH 103 H HOH 87 5 HOH HOH 104 H HOH 59 5 HOH HOH 105 H HOH 144 5 HOH HOH 106 H HOH 46 5 HOH HOH 107 H HOH 68 5 HOH HOH 108 H HOH 53 5 HOH HOH 109 H HOH 114 5 HOH HOH 110 H HOH 66 5 HOH HOH 111 H HOH 167 5 HOH HOH 112 H HOH 146 5 HOH HOH 113 H HOH 133 5 HOH HOH 114 H HOH 149 5 HOH HOH 115 H HOH 165 5 HOH HOH 116 H HOH 117 5 HOH HOH 117 H HOH 132 5 HOH HOH 118 H GLY 254 n 1 GLY 254 A THR 255 n 2 THR 255 A VAL 256 n 3 VAL 256 A ILE 257 n 4 ILE 257 A PRO 258 n 5 PRO 258 A ASN 259 n 6 ASN 259 A ASN 260 n 7 ASN 260 A TYR 261 n 8 TYR 261 A CYS 262 n 9 CYS 262 A ASP 263 n 10 ASP 263 A PHE 264 n 11 PHE 264 A CYS 265 n 12 CYS 265 A LEU 266 n 13 LEU 266 A GLY 267 n 14 GLY 267 A GLY 268 n 15 GLY 268 A SER 269 n 16 SER 269 A ASN 270 n 17 ASN 270 A MET 271 n 18 MET 271 A ASN 272 n 19 ASN 272 A LYS 273 n 20 LYS 273 A LYS 274 n 21 LYS 274 A SER 275 n 22 SER 275 A GLY 276 n 23 GLY 276 A ARG 277 n 24 ARG 277 A PRO 278 n 25 PRO 278 A GLU 279 n 26 GLU 279 A GLU 280 n 27 GLU 280 A LEU 281 n 28 LEU 281 A VAL 282 n 29 VAL 282 A SER 283 n 30 SER 283 A CYS 284 n 31 CYS 284 A ALA 285 n 32 ALA 285 A ASP 286 n 33 ASP 286 A CYS 287 n 34 CYS 287 A GLY 288 n 35 GLY 288 A ARG 289 n 36 ARG 289 A SER 290 n 37 SER 290 A GLY 291 n 38 GLY 291 A HIS 292 n 39 HIS 292 A PRO 293 n 40 PRO 293 A THR 294 n 41 THR 294 A CYS 295 n 42 CYS 295 A LEU 296 n 43 LEU 296 A GLN 297 n 44 GLN 297 A PHE 298 n 45 PHE 298 A THR 299 n 46 THR 299 A LEU 300 n 47 LEU 300 A ASN 301 n 48 ASN 301 A MET 302 n 49 MET 302 A THR 303 n 50 THR 303 A GLU 304 n 51 GLU 304 A ALA 305 n 52 ALA 305 A VAL 306 n 53 VAL 306 A LYS 307 n 54 LYS 307 A THR 308 n 55 THR 308 A TYR 309 n 56 TYR 309 A LYS 310 n 57 LYS 310 A TRP 311 n 58 TRP 311 A GLN 312 n 59 GLN 312 A CYS 313 n 60 CYS 313 A ILE 314 n 61 ILE 314 A GLU 315 n 62 GLU 315 A CYS 316 n 63 CYS 316 A LYS 317 n 64 LYS 317 A SER 318 n 65 SER 318 A CYS 319 n 66 CYS 319 A ILE 320 n 67 ILE 320 A LEU 321 n 68 LEU 321 A CYS 322 n 69 CYS 322 A GLY 323 n 70 GLY 323 A THR 324 n 71 THR 324 A SER 325 n 72 SER 325 A GLU 326 n 73 GLU 326 A ASN 327 n 74 ASN 327 A ASP 328 n 75 ASP 328 A ASP 329 n 76 ASP 329 A GLN 330 n 77 GLN 330 A LEU 331 n 78 LEU 331 A LEU 332 n 79 LEU 332 A PHE 333 n 80 PHE 333 A CYS 334 n 81 CYS 334 A ASP 335 n 82 ASP 335 A ASP 336 n 83 ASP 336 A CYS 337 n 84 CYS 337 A ASP 338 n 85 ASP 338 A ARG 339 n 86 ARG 339 A GLY 340 n 87 GLY 340 A TYR 341 n 88 TYR 341 A HIS 342 n 89 HIS 342 A MET 343 n 90 MET 343 A TYR 344 n 91 TYR 344 A CYS 345 n 92 CYS 345 A LEU 346 n 93 LEU 346 A ASN 347 n 94 ASN 347 A PRO 348 n 95 PRO 348 A PRO 349 n 96 PRO 349 A VAL 350 n 97 VAL 350 A ALA 351 n 98 ALA 351 A GLU 352 n 99 GLU 352 A PRO 353 n 100 PRO 353 A PRO 354 n 101 PRO 354 A GLU 355 n 102 GLU 355 A GLY 356 n 103 GLY 356 A SER 357 n 104 SER 357 A TRP 358 n 105 TRP 358 A SER 359 n 106 SER 359 A CYS 360 n 107 CYS 360 A HIS 361 n 108 HIS 361 A LEU 362 n 109 LEU 362 A CYS 363 n 110 CYS 363 A TRP 364 n 111 TRP 364 A GLU 365 n 112 GLU 365 A LEU 366 n 113 LEU 366 A LEU 367 n 114 LEU 367 A LYS 368 n 115 LYS 368 A ALA 1 n 1 ALA 1 H ARG 2 n 2 ARG 2 H THR 3 n 3 THR 3 H LYS 4 n 4 LYS 4 H GLN 5 n 5 GLN 5 H THR 6 n 6 THR 6 H ALA 7 n 7 ALA 7 H ARG 8 n 8 ARG 8 H LYS 9 n 9 LYS 9 H SER 10 n 10 SER 10 H THR 11 n 11 THR 11 H GLY 12 n 12 GLY 12 H GLY 13 n 13 GLY 13 H ALY 14 n 14 ALY 14 H ALA 15 n 15 ALA 15 H n 16 16 H n 17 17 H n 18 18 H author_and_software_defined_assembly PISA 2 dimeric software_defined_assembly PISA 4 tetrameric 1920 -10 7340 5300 -31 13220 A CYS 262 A SG CYS 9 1_555 A ZN 401 C ZN ZN 1_555 A CYS 265 A SG CYS 12 1_555 110.8 A CYS 262 A SG CYS 9 1_555 A ZN 401 C ZN ZN 1_555 A HIS 292 A ND1 HIS 39 1_555 100.0 A CYS 265 A SG CYS 12 1_555 A ZN 401 C ZN ZN 1_555 A HIS 292 A ND1 HIS 39 1_555 95.7 A CYS 262 A SG CYS 9 1_555 A ZN 401 C ZN ZN 1_555 A CYS 295 A SG CYS 42 1_555 111.9 A CYS 265 A SG CYS 12 1_555 A ZN 401 C ZN ZN 1_555 A CYS 295 A SG CYS 42 1_555 118.0 A HIS 292 A ND1 HIS 39 1_555 A ZN 401 C ZN ZN 1_555 A CYS 295 A SG CYS 42 1_555 118.1 A CYS 284 A SG CYS 31 1_555 A ZN 402 D ZN ZN 1_555 A CYS 287 A SG CYS 34 1_555 108.5 A CYS 284 A SG CYS 31 1_555 A ZN 402 D ZN ZN 1_555 A CYS 313 A SG CYS 60 1_555 112.6 A CYS 287 A SG CYS 34 1_555 A ZN 402 D ZN ZN 1_555 A CYS 313 A SG CYS 60 1_555 112.5 A CYS 284 A SG CYS 31 1_555 A ZN 402 D ZN ZN 1_555 A CYS 316 A SG CYS 63 1_555 106.3 A CYS 287 A SG CYS 34 1_555 A ZN 402 D ZN ZN 1_555 A CYS 316 A SG CYS 63 1_555 110.2 A CYS 313 A SG CYS 60 1_555 A ZN 402 D ZN ZN 1_555 A CYS 316 A SG CYS 63 1_555 106.7 A CYS 319 A SG CYS 66 1_555 A ZN 403 E ZN ZN 1_555 A CYS 322 A SG CYS 69 1_555 110.0 A CYS 319 A SG CYS 66 1_555 A ZN 403 E ZN ZN 1_555 A HIS 342 A ND1 HIS 89 1_555 100.2 A CYS 322 A SG CYS 69 1_555 A ZN 403 E ZN ZN 1_555 A HIS 342 A ND1 HIS 89 1_555 97.7 A CYS 319 A SG CYS 66 1_555 A ZN 403 E ZN ZN 1_555 A CYS 345 A SG CYS 92 1_555 119.9 A CYS 322 A SG CYS 69 1_555 A ZN 403 E ZN ZN 1_555 A CYS 345 A SG CYS 92 1_555 109.9 A HIS 342 A ND1 HIS 89 1_555 A ZN 403 E ZN ZN 1_555 A CYS 345 A SG CYS 92 1_555 116.5 A CYS 334 A SG CYS 81 1_555 A ZN 404 F ZN ZN 1_555 A CYS 337 A SG CYS 84 1_555 105.8 A CYS 334 A SG CYS 81 1_555 A ZN 404 F ZN ZN 1_555 A CYS 360 A SG CYS 107 1_555 110.4 A CYS 337 A SG CYS 84 1_555 A ZN 404 F ZN ZN 1_555 A CYS 360 A SG CYS 107 1_555 112.2 A CYS 334 A SG CYS 81 1_555 A ZN 404 F ZN ZN 1_555 A CYS 363 A SG CYS 110 1_555 110.6 A CYS 337 A SG CYS 84 1_555 A ZN 404 F ZN ZN 1_555 A CYS 363 A SG CYS 110 1_555 104.9 A CYS 360 A SG CYS 107 1_555 A ZN 404 F ZN ZN 1_555 A CYS 363 A SG CYS 110 1_555 112.6 H ALY 14 modified residue B ALY 14 LYS 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_466 y-1,x+1,-z+1 crystal symmetry operation -39.3210000000 39.3210000000 147.5710000000 A N VAL 282 A N VAL 29 A O GLY 291 A O GLY 38 A O TYR 341 A O TYR 88 A N LEU 332 A N LEU 79 A N PHE 333 A N PHE 80 H O ARG 2 B O ARG 2 1 A HOH 586 H HOH 1 A HOH 648 H HOH 1 A CG GLU 352 A CG GLU 99 1 Y 1 A CD GLU 352 A CD GLU 99 1 Y 1 A OE1 GLU 352 A OE1 GLU 99 1 Y 1 A OE2 GLU 352 A OE2 GLU 99 1 Y 1 A CG GLU 355 A CG GLU 102 1 Y 1 A CD GLU 355 A CD GLU 102 1 Y 1 A OE1 GLU 355 A OE1 GLU 102 1 Y 1 A OE2 GLU 355 A OE2 GLU 102 1 Y 1 A CG LYS 368 A CG LYS 115 1 Y 1 A CD LYS 368 A CD LYS 115 1 Y 1 A CE LYS 368 A CE LYS 115 1 Y 1 A NZ LYS 368 A NZ LYS 115 1 Y 1 H PRO 16 B PRO 16 1 Y 1 H ARG 17 B ARG 17 1 Y 1 H LYS 18 B LYS 18 1 Y 1 A A OE2 HZ1 GLU LYS 280 307 1.45 1 H H O O HOH HOH 112 116 2.09 1 A A O O HOH HOH 606 645 2.09 1 A A O O HOH HOH 537 623 2.11 1 A A O O HOH HOH 503 571 2.13 1 A A N O GLY HOH 254 501 2.14 1 A H O O HOH HOH 606 105 2.18 1 A A O O HOH HOH 508 611 1.89 1_555 7_466 1 A MET 271 -162.75 108.09 1 H THR 11 -117.76 75.59 0.1554 0.1380 0.1394 1.20 37.996 5820 70420 8.26 99.65 0.07 1 FREE R-VALUE 1.27 SAD 11.98 0.90 1.11 1.20 37.996 177 1177 12 0 988 0.010 1053 1.390 1432 13.291 397 0.094 154 0.007 186 0.1620 0.1323 1.2047 211 2019 96.00 0.2718 0.2263 1.2188 187 2139 99.00 0.1847 0.1502 1.2337 172 2184 99.00 0.1300 0.1117 1.2493 219 2099 100.00 0.1401 0.1177 1.2658 189 2201 100.00 0.1600 0.1408 1.2831 177 2108 98.00 0.2630 0.2157 1.3014 212 2129 98.00 0.1426 0.1204 1.3209 203 2148 100.00 0.1525 0.1185 1.3415 201 2115 100.00 0.1532 0.1183 1.3635 190 2222 100.00 0.1483 0.1116 1.3870 197 2111 100.00 0.1476 0.1115 1.4122 198 2182 100.00 0.1480 0.1101 1.4394 194 2139 100.00 0.1344 0.1088 1.4688 198 2176 100.00 0.1194 0.1037 1.5007 195 2165 100.00 0.1501 0.1025 1.5356 193 2167 100.00 0.1204 0.1028 1.5740 195 2205 100.00 0.1387 0.0982 1.6166 191 2113 100.00 0.1121 0.0996 1.6642 197 2157 100.00 0.1457 0.0977 1.7179 183 2177 100.00 0.1074 0.1084 1.7793 199 2177 100.00 0.1166 0.1140 1.8505 194 2151 100.00 0.1613 0.1504 1.9347 181 2128 100.00 0.1193 0.1254 2.0367 196 2185 100.00 0.1408 0.1267 2.1643 186 2168 100.00 0.1589 0.1552 2.3314 187 2179 100.00 0.1566 0.1473 2.5660 197 2147 100.00 0.1915 0.1569 2.9372 188 2181 100.00 0.1712 0.1574 3.7000 195 2169 100.00 0.1814 0.1703 38.0151 195 2159 100.00 1.2 39.61 5SZB 38299 0.999 0.050 1 38.3 12.3 99.9 0.26 1.20 1.22 8.2 0.978 1 10.1 98.4 refinement PHENIX (1.10_2155: ???) data reduction XDS data scaling Aimless phasing PHASER N Structure of human Dpf3 double-PHD domain bound to histone H3 tail peptide with acetylated K14 1 N N 2 N N 3 N N 3 N N 3 N N 3 N N 4 N N 5 N N 5 N N A THR 299 A THR 46 HELX_P A LYS 307 A LYS 54 1 AA1 9 A ASN 327 A ASN 74 HELX_P A ASP 329 A ASP 76 5 AA2 3 A CYS 360 A CYS 107 HELX_P A LYS 368 A LYS 115 1 AA3 9 H LYS 4 B LYS 4 HELX_P H THR 11 B THR 11 1 AA4 8 covale 1.325 both H GLY 13 B C GLY 13 1_555 H ALY 14 B N ALY 14 1_555 covale 1.336 both H ALY 14 B C ALY 14 1_555 H ALA 15 B N ALA 15 1_555 metalc 2.335 A CYS 262 A SG CYS 9 1_555 A ZN 401 C ZN ZN 1_555 metalc 2.310 A CYS 265 A SG CYS 12 1_555 A ZN 401 C ZN ZN 1_555 metalc 2.345 A CYS 284 A SG CYS 31 1_555 A ZN 402 D ZN ZN 1_555 metalc 2.300 A CYS 287 A SG CYS 34 1_555 A ZN 402 D ZN ZN 1_555 metalc 2.082 A HIS 292 A ND1 HIS 39 1_555 A ZN 401 C ZN ZN 1_555 metalc 2.286 A CYS 295 A SG CYS 42 1_555 A ZN 401 C ZN ZN 1_555 metalc 2.322 A CYS 313 A SG CYS 60 1_555 A ZN 402 D ZN ZN 1_555 metalc 2.302 A CYS 316 A SG CYS 63 1_555 A ZN 402 D ZN ZN 1_555 metalc 2.328 A CYS 319 A SG CYS 66 1_555 A ZN 403 E ZN ZN 1_555 metalc 2.297 A CYS 322 A SG CYS 69 1_555 A ZN 403 E ZN ZN 1_555 metalc 2.333 A CYS 334 A SG CYS 81 1_555 A ZN 404 F ZN ZN 1_555 metalc 2.311 A CYS 337 A SG CYS 84 1_555 A ZN 404 F ZN ZN 1_555 metalc 2.097 A HIS 342 A ND1 HIS 89 1_555 A ZN 403 E ZN ZN 1_555 metalc 2.257 A CYS 345 A SG CYS 92 1_555 A ZN 403 E ZN ZN 1_555 metalc 2.327 A CYS 360 A SG CYS 107 1_555 A ZN 404 F ZN ZN 1_555 metalc 2.295 A CYS 363 A SG CYS 110 1_555 A ZN 404 F ZN ZN 1_555 PEPTIDE BINDING PROTEIN chromatin, modified histone, PHD domain, zinc binding domain, BAF45, BAF complex, PEPTIDE-BINDING PROTEIN, PEPTIDE BINDING PROTEIN A ASN 347 A ASN 94 1 A PRO 348 A PRO 95 3.00 DPF3_HUMAN UNP 1 254 Q92784 GTVIPNNYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTSENDDQLLF CDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK V9H1G0_HUMAN UNP 2 2 V9H1G0 ARTKQTARKSTGGKAPRK 254 368 5SZB 254 368 Q92784 A 1 1 115 2 19 5SZB 1 18 V9H1G0 H 2 1 18 2 3 anti-parallel anti-parallel anti-parallel A VAL 282 A VAL 29 A SER 283 A SER 30 A SER 290 A SER 37 A GLY 291 A GLY 38 A GLY 340 A GLY 87 A HIS 342 A HIS 89 A LEU 331 A LEU 78 A PHE 333 A PHE 80 H ARG 2 B ARG 2 H THR 3 B THR 3 binding site for residue ZN A 401 A ZN 401 Software 4 binding site for residue ZN A 402 A ZN 402 Software 4 binding site for residue ZN A 403 A ZN 403 Software 4 binding site for residue ZN A 404 A ZN 404 Software 4 binding site for residue MPD A 405 A MPD 405 Software 7 A CYS 262 A CYS 9 4 1_555 A CYS 265 A CYS 12 4 1_555 A HIS 292 A HIS 39 4 1_555 A CYS 295 A CYS 42 4 1_555 A CYS 284 A CYS 31 4 1_555 A CYS 287 A CYS 34 4 1_555 A CYS 313 A CYS 60 4 1_555 A CYS 316 A CYS 63 4 1_555 A CYS 319 A CYS 66 4 1_555 A CYS 322 A CYS 69 4 1_555 A HIS 342 A HIS 89 4 1_555 A CYS 345 A CYS 92 4 1_555 A CYS 334 A CYS 81 4 1_555 A CYS 337 A CYS 84 4 1_555 A CYS 360 A CYS 107 4 1_555 A CYS 363 A CYS 110 4 1_555 A TYR 261 A TYR 8 7 5_555 A LEU 266 A LEU 13 7 5_555 A ARG 277 A ARG 24 7 1_555 A PRO 278 A PRO 25 7 1_555 A TRP 364 A TRP 111 7 7_466 A HOH 533 H HOH 7 1_555 A HOH 546 H HOH 7 5_555 96 P 43 21 2