0.016194
0.000000
0.000000
0.000000
0.007729
0.000000
0.000000
0.000000
0.007701
0.00000
0.00000
0.00000
Rai, A.
Oprisko, A.
Campos, J.
Fu, Y.
Friese, T.
Goody, R.S.
Mueller, M.P.
Gazdag, E.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
61.750
129.380
129.850
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C10 H17 N6 O13 P3
522.196
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
P
N
138
N
O
N
139
N
O
N
140
N
O
N
141
N
N
N
142
R
P
N
143
N
O
N
144
N
O
N
145
N
O
N
146
S
P
N
147
N
O
N
148
N
O
N
149
N
O
N
150
N
C
N
151
R
C
N
152
N
O
N
153
S
C
N
154
N
O
N
155
R
C
N
156
N
O
N
157
R
C
Y
158
N
N
Y
159
N
C
Y
160
N
N
Y
161
N
C
Y
162
N
C
N
163
N
O
Y
164
N
N
Y
165
N
C
N
166
N
N
Y
167
N
N
Y
168
N
C
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
N
N
187
S
C
N
188
N
C
N
189
N
O
N
190
N
C
Y
191
N
C
Y
192
N
N
Y
193
N
C
Y
194
N
C
Y
195
N
N
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
S
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
N
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
S
N
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
MG
N
300
N
N
N
301
S
C
N
302
N
C
N
303
N
O
N
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
Y
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
N
N
324
S
C
N
325
N
C
N
326
N
O
N
327
N
C
N
328
N
C
N
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
N
N
341
S
C
N
342
N
C
N
343
N
O
N
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
R
C
N
359
N
O
N
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
N
N
372
S
C
N
373
N
C
N
374
N
O
N
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
N
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
N
409
N
O
N
410
N
O
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
N
N
423
S
C
N
424
N
C
N
425
N
O
N
426
N
C
N
427
N
C
N
428
N
C
N
429
N
O
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
Y
164
N
sing
Y
165
N
sing
Y
166
N
doub
N
167
N
sing
Y
168
N
sing
Y
169
N
sing
Y
170
N
doub
N
171
N
doub
Y
172
N
sing
Y
173
N
sing
N
174
N
sing
N
175
N
sing
Y
176
N
doub
N
177
N
sing
N
178
N
sing
Y
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
Y
191
N
sing
Y
192
N
doub
Y
193
N
doub
N
194
N
sing
Y
195
N
sing
N
196
N
sing
Y
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
doub
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
doub
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
doub
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
Y
299
N
doub
Y
300
N
sing
Y
301
N
sing
N
302
N
sing
Y
303
N
doub
N
304
N
sing
Y
305
N
doub
N
306
N
sing
Y
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
doub
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
doub
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
Y
368
N
doub
Y
369
N
sing
Y
370
N
sing
N
371
N
sing
Y
372
N
doub
Y
373
N
sing
Y
374
N
sing
N
375
N
sing
Y
376
N
sing
Y
377
N
doub
N
378
N
sing
Y
379
N
doub
N
380
N
sing
Y
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
doub
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
Y
396
N
doub
Y
397
N
sing
Y
398
N
sing
N
399
N
sing
Y
400
N
doub
N
401
N
sing
Y
402
N
doub
N
403
N
sing
Y
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
doub
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
US
Elife
2050-084X
5
10.7554/eLife.18675
27552051
bMERB domains are bivalent Rab8 family effectors evolved by gene duplication.
2016
10.2210/pdb5szh/pdb
pdb_00005szh
100
1
PIXEL
2015-02-16
DECTRIS PILATUS 6M
SINGLE WAVELENGTH
M
x-ray
1
0.9999
1.0
X10SA
SLS
0.9999
SYNCHROTRON
SLS BEAMLINE X10SA
18469.699
MICAL C-terminal-like protein
1
man
polymer
22391.330
Ras-related protein Rab-1B
1
man
polymer
522.196
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
1
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
18.015
water
27
nat
water
ERK2-binding testicular protein 1,Ebitein-1
no
no
GHMKQEELKRLYKAQAIQRQLEEVEERQRASEIQGVRLEKALRGEADSGTQDEAQLLQEWFKLVLEKNKLMRYESELLIM
AQELELEDHQSRLEQKLREKMLKEESQKDEKDLNEEQEVFTELMQVIEQRDKLVDSLEEQRIREKAEDQHFES
GHMKQEELKRLYKAQAIQRQLEEVEERQRASEIQGVRLEKALRGEADSGTQDEAQLLQEWFKLVLEKNKLMRYESELLIM
AQELELEDHQSRLEQKLREKMLKEESQKDEKDLNEEQEVFTELMQVIEQRDKLVDSLEEQRIREKAEDQHFES
A
polypeptide(L)
no
no
GHMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY
RGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNV
EQAFMTMAAEIKKRMGPGAASGGERPNLKIDSTPVKPAGGGCC
GHMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYY
RGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNV
EQAFMTMAAEIKKRMGPGAASGGERPNLKIDSTPVKPAGGGCC
B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
153
MICALCL
9606
Homo sapiens
562
Escherichia coli
Biological sequence
Human
sample
1
203
RAB1B
9606
Homo sapiens
562
Escherichia coli
Biological sequence
1
3.17
61.24
VAPOR DIFFUSION, HANGING DROP
20-22% PEG3350
0.1M bis-Tris Propane
0.2M tri-Sodium Citrate
8.4-8.6
293
pdbx_audit_support
atom_site
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
repository
Initial release
Database references
Database references
Author supporting evidence
Atomic model
Data collection
Database references
Derived calculations
Refinement description
1
0
2016-08-24
1
1
2016-09-07
1
2
2016-09-14
1
3
2017-09-06
2
0
2024-01-17
_pdbx_audit_support.funding_organization
_atom_site.occupancy
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr2_auth_seq_id
Germany
German Research Foundation
SFB 642, grant A4
Germany
Max Planck Society
N
RCSB
Y
PDBE
2016-08-14
REL
REL
GNP
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
MG
MAGNESIUM ION
HOH
water
3NKV
3NKV, 5SZG
PDB
experimental model
5SZG
3NKV, 5SZG
PDB
experimental model
GNP
302
3
GNP
GNP
301
B
MG
1
4
MG
MG
302
B
HOH
10
5
HOH
HOH
701
A
HOH
14
5
HOH
HOH
702
A
HOH
28
5
HOH
HOH
703
A
HOH
9
5
HOH
HOH
704
A
HOH
26
5
HOH
HOH
705
A
HOH
27
5
HOH
HOH
706
A
HOH
12
5
HOH
HOH
401
B
HOH
18
5
HOH
HOH
402
B
HOH
20
5
HOH
HOH
403
B
HOH
4
5
HOH
HOH
404
B
HOH
5
5
HOH
HOH
405
B
HOH
2
5
HOH
HOH
406
B
HOH
22
5
HOH
HOH
407
B
HOH
15
5
HOH
HOH
408
B
HOH
16
5
HOH
HOH
409
B
HOH
3
5
HOH
HOH
410
B
HOH
8
5
HOH
HOH
411
B
HOH
21
5
HOH
HOH
412
B
HOH
7
5
HOH
HOH
413
B
HOH
19
5
HOH
HOH
414
B
HOH
6
5
HOH
HOH
415
B
HOH
17
5
HOH
HOH
416
B
HOH
11
5
HOH
HOH
417
B
HOH
23
5
HOH
HOH
418
B
HOH
24
5
HOH
HOH
419
B
HOH
25
5
HOH
HOH
420
B
HOH
13
5
HOH
HOH
421
B
GLY
531
n
1
GLY
531
A
HIS
532
n
2
HIS
532
A
MET
533
n
3
MET
533
A
LYS
534
n
4
LYS
534
A
GLN
535
n
5
GLN
535
A
GLU
536
n
6
GLU
536
A
GLU
537
n
7
GLU
537
A
LEU
538
n
8
LEU
538
A
LYS
539
n
9
LYS
539
A
ARG
540
n
10
ARG
540
A
LEU
541
n
11
LEU
541
A
TYR
542
n
12
TYR
542
A
LYS
543
n
13
LYS
543
A
ALA
544
n
14
ALA
544
A
GLN
545
n
15
GLN
545
A
ALA
546
n
16
ALA
546
A
ILE
547
n
17
ILE
547
A
GLN
548
n
18
GLN
548
A
ARG
549
n
19
ARG
549
A
GLN
550
n
20
GLN
550
A
LEU
551
n
21
LEU
551
A
GLU
552
n
22
GLU
552
A
GLU
553
n
23
GLU
553
A
VAL
554
n
24
VAL
554
A
GLU
555
n
25
GLU
555
A
GLU
556
n
26
GLU
556
A
ARG
557
n
27
ARG
557
A
GLN
558
n
28
GLN
558
A
ARG
559
n
29
ARG
559
A
ALA
560
n
30
ALA
560
A
SER
561
n
31
SER
561
A
GLU
562
n
32
GLU
562
A
ILE
563
n
33
ILE
563
A
GLN
564
n
34
GLN
564
A
GLY
565
n
35
GLY
565
A
VAL
566
n
36
VAL
566
A
ARG
567
n
37
ARG
567
A
LEU
568
n
38
LEU
568
A
GLU
569
n
39
GLU
569
A
LYS
570
n
40
LYS
570
A
ALA
571
n
41
ALA
571
A
LEU
572
n
42
LEU
572
A
ARG
573
n
43
ARG
573
A
GLY
574
n
44
GLY
574
A
GLU
575
n
45
GLU
575
A
n
46
576
A
n
47
577
A
n
48
578
A
n
49
579
A
n
50
580
A
GLN
581
n
51
GLN
581
A
ASP
582
n
52
ASP
582
A
GLU
583
n
53
GLU
583
A
ALA
584
n
54
ALA
584
A
GLN
585
n
55
GLN
585
A
LEU
586
n
56
LEU
586
A
LEU
587
n
57
LEU
587
A
GLN
588
n
58
GLN
588
A
GLU
589
n
59
GLU
589
A
TRP
590
n
60
TRP
590
A
PHE
591
n
61
PHE
591
A
LYS
592
n
62
LYS
592
A
LEU
593
n
63
LEU
593
A
VAL
594
n
64
VAL
594
A
LEU
595
n
65
LEU
595
A
GLU
596
n
66
GLU
596
A
LYS
597
n
67
LYS
597
A
ASN
598
n
68
ASN
598
A
LYS
599
n
69
LYS
599
A
LEU
600
n
70
LEU
600
A
MET
601
n
71
MET
601
A
ARG
602
n
72
ARG
602
A
TYR
603
n
73
TYR
603
A
GLU
604
n
74
GLU
604
A
SER
605
n
75
SER
605
A
GLU
606
n
76
GLU
606
A
LEU
607
n
77
LEU
607
A
LEU
608
n
78
LEU
608
A
ILE
609
n
79
ILE
609
A
MET
610
n
80
MET
610
A
ALA
611
n
81
ALA
611
A
GLN
612
n
82
GLN
612
A
GLU
613
n
83
GLU
613
A
LEU
614
n
84
LEU
614
A
GLU
615
n
85
GLU
615
A
LEU
616
n
86
LEU
616
A
GLU
617
n
87
GLU
617
A
ASP
618
n
88
ASP
618
A
HIS
619
n
89
HIS
619
A
GLN
620
n
90
GLN
620
A
SER
621
n
91
SER
621
A
ARG
622
n
92
ARG
622
A
LEU
623
n
93
LEU
623
A
GLU
624
n
94
GLU
624
A
GLN
625
n
95
GLN
625
A
LYS
626
n
96
LYS
626
A
LEU
627
n
97
LEU
627
A
ARG
628
n
98
ARG
628
A
GLU
629
n
99
GLU
629
A
LYS
630
n
100
LYS
630
A
MET
631
n
101
MET
631
A
LEU
632
n
102
LEU
632
A
LYS
633
n
103
LYS
633
A
GLU
634
n
104
GLU
634
A
GLU
635
n
105
GLU
635
A
SER
636
n
106
SER
636
A
GLN
637
n
107
GLN
637
A
LYS
638
n
108
LYS
638
A
ASP
639
n
109
ASP
639
A
GLU
640
n
110
GLU
640
A
LYS
641
n
111
LYS
641
A
ASP
642
n
112
ASP
642
A
LEU
643
n
113
LEU
643
A
ASN
644
n
114
ASN
644
A
GLU
645
n
115
GLU
645
A
GLU
646
n
116
GLU
646
A
GLN
647
n
117
GLN
647
A
GLU
648
n
118
GLU
648
A
VAL
649
n
119
VAL
649
A
PHE
650
n
120
PHE
650
A
THR
651
n
121
THR
651
A
GLU
652
n
122
GLU
652
A
LEU
653
n
123
LEU
653
A
MET
654
n
124
MET
654
A
GLN
655
n
125
GLN
655
A
VAL
656
n
126
VAL
656
A
ILE
657
n
127
ILE
657
A
GLU
658
n
128
GLU
658
A
GLN
659
n
129
GLN
659
A
ARG
660
n
130
ARG
660
A
ASP
661
n
131
ASP
661
A
LYS
662
n
132
LYS
662
A
LEU
663
n
133
LEU
663
A
VAL
664
n
134
VAL
664
A
ASP
665
n
135
ASP
665
A
SER
666
n
136
SER
666
A
LEU
667
n
137
LEU
667
A
GLU
668
n
138
GLU
668
A
GLU
669
n
139
GLU
669
A
GLN
670
n
140
GLN
670
A
ARG
671
n
141
ARG
671
A
ILE
672
n
142
ILE
672
A
ARG
673
n
143
ARG
673
A
GLU
674
n
144
GLU
674
A
LYS
675
n
145
LYS
675
A
ALA
676
n
146
ALA
676
A
GLU
677
n
147
GLU
677
A
ASP
678
n
148
ASP
678
A
n
149
679
A
n
150
680
A
n
151
681
A
n
152
682
A
n
153
683
A
GLY
-1
n
1
GLY
-1
B
HIS
0
n
2
HIS
0
B
MET
1
n
3
MET
1
B
ASN
2
n
4
ASN
2
B
PRO
3
n
5
PRO
3
B
GLU
4
n
6
GLU
4
B
TYR
5
n
7
TYR
5
B
ASP
6
n
8
ASP
6
B
TYR
7
n
9
TYR
7
B
LEU
8
n
10
LEU
8
B
PHE
9
n
11
PHE
9
B
LYS
10
n
12
LYS
10
B
LEU
11
n
13
LEU
11
B
LEU
12
n
14
LEU
12
B
LEU
13
n
15
LEU
13
B
ILE
14
n
16
ILE
14
B
GLY
15
n
17
GLY
15
B
ASP
16
n
18
ASP
16
B
SER
17
n
19
SER
17
B
GLY
18
n
20
GLY
18
B
VAL
19
n
21
VAL
19
B
GLY
20
n
22
GLY
20
B
LYS
21
n
23
LYS
21
B
SER
22
n
24
SER
22
B
CYS
23
n
25
CYS
23
B
LEU
24
n
26
LEU
24
B
LEU
25
n
27
LEU
25
B
LEU
26
n
28
LEU
26
B
ARG
27
n
29
ARG
27
B
PHE
28
n
30
PHE
28
B
ALA
29
n
31
ALA
29
B
ASP
30
n
32
ASP
30
B
ASP
31
n
33
ASP
31
B
THR
32
n
34
THR
32
B
TYR
33
n
35
TYR
33
B
THR
34
n
36
THR
34
B
GLU
35
n
37
GLU
35
B
SER
36
n
38
SER
36
B
TYR
37
n
39
TYR
37
B
ILE
38
n
40
ILE
38
B
SER
39
n
41
SER
39
B
THR
40
n
42
THR
40
B
ILE
41
n
43
ILE
41
B
GLY
42
n
44
GLY
42
B
VAL
43
n
45
VAL
43
B
ASP
44
n
46
ASP
44
B
PHE
45
n
47
PHE
45
B
LYS
46
n
48
LYS
46
B
ILE
47
n
49
ILE
47
B
ARG
48
n
50
ARG
48
B
THR
49
n
51
THR
49
B
ILE
50
n
52
ILE
50
B
GLU
51
n
53
GLU
51
B
LEU
52
n
54
LEU
52
B
ASP
53
n
55
ASP
53
B
GLY
54
n
56
GLY
54
B
LYS
55
n
57
LYS
55
B
THR
56
n
58
THR
56
B
ILE
57
n
59
ILE
57
B
LYS
58
n
60
LYS
58
B
LEU
59
n
61
LEU
59
B
GLN
60
n
62
GLN
60
B
ILE
61
n
63
ILE
61
B
TRP
62
n
64
TRP
62
B
ASP
63
n
65
ASP
63
B
THR
64
n
66
THR
64
B
ALA
65
n
67
ALA
65
B
GLY
66
n
68
GLY
66
B
GLN
67
n
69
GLN
67
B
GLU
68
n
70
GLU
68
B
ARG
69
n
71
ARG
69
B
PHE
70
n
72
PHE
70
B
ARG
71
n
73
ARG
71
B
THR
72
n
74
THR
72
B
ILE
73
n
75
ILE
73
B
THR
74
n
76
THR
74
B
SER
75
n
77
SER
75
B
SER
76
n
78
SER
76
B
TYR
77
n
79
TYR
77
B
TYR
78
n
80
TYR
78
B
ARG
79
n
81
ARG
79
B
GLY
80
n
82
GLY
80
B
ALA
81
n
83
ALA
81
B
HIS
82
n
84
HIS
82
B
GLY
83
n
85
GLY
83
B
ILE
84
n
86
ILE
84
B
ILE
85
n
87
ILE
85
B
VAL
86
n
88
VAL
86
B
VAL
87
n
89
VAL
87
B
TYR
88
n
90
TYR
88
B
ASP
89
n
91
ASP
89
B
VAL
90
n
92
VAL
90
B
THR
91
n
93
THR
91
B
ASP
92
n
94
ASP
92
B
GLN
93
n
95
GLN
93
B
GLU
94
n
96
GLU
94
B
SER
95
n
97
SER
95
B
TYR
96
n
98
TYR
96
B
ALA
97
n
99
ALA
97
B
ASN
98
n
100
ASN
98
B
VAL
99
n
101
VAL
99
B
LYS
100
n
102
LYS
100
B
GLN
101
n
103
GLN
101
B
TRP
102
n
104
TRP
102
B
LEU
103
n
105
LEU
103
B
GLN
104
n
106
GLN
104
B
GLU
105
n
107
GLU
105
B
ILE
106
n
108
ILE
106
B
ASP
107
n
109
ASP
107
B
ARG
108
n
110
ARG
108
B
TYR
109
n
111
TYR
109
B
ALA
110
n
112
ALA
110
B
SER
111
n
113
SER
111
B
GLU
112
n
114
GLU
112
B
ASN
113
n
115
ASN
113
B
VAL
114
n
116
VAL
114
B
ASN
115
n
117
ASN
115
B
LYS
116
n
118
LYS
116
B
LEU
117
n
119
LEU
117
B
LEU
118
n
120
LEU
118
B
VAL
119
n
121
VAL
119
B
GLY
120
n
122
GLY
120
B
ASN
121
n
123
ASN
121
B
LYS
122
n
124
LYS
122
B
SER
123
n
125
SER
123
B
ASP
124
n
126
ASP
124
B
LEU
125
n
127
LEU
125
B
THR
126
n
128
THR
126
B
THR
127
n
129
THR
127
B
LYS
128
n
130
LYS
128
B
LYS
129
n
131
LYS
129
B
VAL
130
n
132
VAL
130
B
VAL
131
n
133
VAL
131
B
ASP
132
n
134
ASP
132
B
ASN
133
n
135
ASN
133
B
THR
134
n
136
THR
134
B
THR
135
n
137
THR
135
B
ALA
136
n
138
ALA
136
B
LYS
137
n
139
LYS
137
B
GLU
138
n
140
GLU
138
B
PHE
139
n
141
PHE
139
B
ALA
140
n
142
ALA
140
B
ASP
141
n
143
ASP
141
B
SER
142
n
144
SER
142
B
LEU
143
n
145
LEU
143
B
GLY
144
n
146
GLY
144
B
ILE
145
n
147
ILE
145
B
PRO
146
n
148
PRO
146
B
PHE
147
n
149
PHE
147
B
LEU
148
n
150
LEU
148
B
GLU
149
n
151
GLU
149
B
THR
150
n
152
THR
150
B
SER
151
n
153
SER
151
B
ALA
152
n
154
ALA
152
B
LYS
153
n
155
LYS
153
B
ASN
154
n
156
ASN
154
B
ALA
155
n
157
ALA
155
B
THR
156
n
158
THR
156
B
ASN
157
n
159
ASN
157
B
VAL
158
n
160
VAL
158
B
GLU
159
n
161
GLU
159
B
GLN
160
n
162
GLN
160
B
ALA
161
n
163
ALA
161
B
PHE
162
n
164
PHE
162
B
MET
163
n
165
MET
163
B
THR
164
n
166
THR
164
B
MET
165
n
167
MET
165
B
ALA
166
n
168
ALA
166
B
ALA
167
n
169
ALA
167
B
GLU
168
n
170
GLU
168
B
ILE
169
n
171
ILE
169
B
LYS
170
n
172
LYS
170
B
LYS
171
n
173
LYS
171
B
ARG
172
n
174
ARG
172
B
MET
173
n
175
MET
173
B
n
176
174
B
n
177
175
B
n
178
176
B
n
179
177
B
n
180
178
B
n
181
179
B
n
182
180
B
n
183
181
B
n
184
182
B
n
185
183
B
n
186
184
B
n
187
185
B
n
188
186
B
n
189
187
B
n
190
188
B
n
191
189
B
n
192
190
B
n
193
191
B
n
194
192
B
n
195
193
B
n
196
194
B
n
197
195
B
n
198
196
B
n
199
197
B
n
200
198
B
n
201
199
B
n
202
200
B
n
203
201
B
2.2720
0.4150
0.7941
0.5638
0.3947
3.3723
0.0575
-0.0391
-0.1618
-0.0043
0.0110
-0.0393
0.2484
-0.1884
-0.0808
0.4406
0.0002
0.0158
0.4799
0.0303
0.4519
refined
-30.0648
-34.0777
-47.8184
X-RAY DIFFRACTION
3.0898
-1.0080
-0.3198
4.1920
0.6717
2.2212
-0.0036
0.0735
0.1627
-0.0196
0.0002
-0.1066
-0.0651
0.2454
0.0063
0.4279
-0.0009
-0.0502
0.4191
0.0528
0.4786
refined
-21.5022
-11.1242
-31.6661
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
(chain A and resid 531:678)
X-RAY DIFFRACTION
2
(chain B and resid 0:174)
software_defined_assembly
PISA
2
dimeric
3290
-26
17650
B
SER
22
B
OG
SER
24
1_555
B
MG
302
D
MG
MG
1_555
B
THR
40
B
OG1
THR
42
1_555
79.9
B
SER
22
B
OG
SER
24
1_555
B
MG
302
D
MG
MG
1_555
B
GNP
301
C
O1G
GNP
1_555
167.1
B
THR
40
B
OG1
THR
42
1_555
B
MG
302
D
MG
MG
1_555
B
GNP
301
C
O1G
GNP
1_555
91.4
B
SER
22
B
OG
SER
24
1_555
B
MG
302
D
MG
MG
1_555
B
GNP
301
C
O1B
GNP
1_555
99.3
B
THR
40
B
OG1
THR
42
1_555
B
MG
302
D
MG
MG
1_555
B
GNP
301
C
O1B
GNP
1_555
177.4
B
GNP
301
C
O1G
GNP
1_555
B
MG
302
D
MG
MG
1_555
B
GNP
301
C
O1B
GNP
1_555
89.0
B
SER
22
B
OG
SER
24
1_555
B
MG
302
D
MG
MG
1_555
B
HOH
404
F
O
HOH
1_555
93.8
B
THR
40
B
OG1
THR
42
1_555
B
MG
302
D
MG
MG
1_555
B
HOH
404
F
O
HOH
1_555
83.9
B
GNP
301
C
O1G
GNP
1_555
B
MG
302
D
MG
MG
1_555
B
HOH
404
F
O
HOH
1_555
94.8
B
GNP
301
C
O1B
GNP
1_555
B
MG
302
D
MG
MG
1_555
B
HOH
404
F
O
HOH
1_555
98.6
B
SER
22
B
OG
SER
24
1_555
B
MG
302
D
MG
MG
1_555
B
HOH
410
F
O
HOH
1_555
86.2
B
THR
40
B
OG1
THR
42
1_555
B
MG
302
D
MG
MG
1_555
B
HOH
410
F
O
HOH
1_555
88.1
B
GNP
301
C
O1G
GNP
1_555
B
MG
302
D
MG
MG
1_555
B
HOH
410
F
O
HOH
1_555
83.9
B
GNP
301
C
O1B
GNP
1_555
B
MG
302
D
MG
MG
1_555
B
HOH
410
F
O
HOH
1_555
89.4
B
HOH
404
F
O
HOH
1_555
B
MG
302
D
MG
MG
1_555
B
HOH
410
F
O
HOH
1_555
171.9
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
B
N
ILE
50
B
N
ILE
52
B
O
ILE
57
B
O
ILE
59
B
O
TRP
62
B
O
TRP
64
B
N
LEU
11
B
N
LEU
13
B
N
LEU
12
B
N
LEU
14
B
O
ILE
85
B
O
ILE
87
B
N
TYR
88
B
N
TYR
90
B
O
ASN
121
B
O
ASN
123
B
N
LEU
118
B
N
LEU
120
B
O
LEU
148
B
O
LEU
150
1
B
HOH
401
F
HOH
1
B
HOH
413
F
HOH
1
A
CG
ARG
559
A
CG
ARG
29
1
Y
1
A
CD
ARG
559
A
CD
ARG
29
1
Y
1
A
NE
ARG
559
A
NE
ARG
29
1
Y
1
A
CZ
ARG
559
A
CZ
ARG
29
1
Y
1
A
NH1
ARG
559
A
NH1
ARG
29
1
Y
1
A
NH2
ARG
559
A
NH2
ARG
29
1
Y
1
A
CG
ARG
567
A
CG
ARG
37
1
Y
1
A
CD
ARG
567
A
CD
ARG
37
1
Y
1
A
NE
ARG
567
A
NE
ARG
37
1
Y
1
A
CZ
ARG
567
A
CZ
ARG
37
1
Y
1
A
NH1
ARG
567
A
NH1
ARG
37
1
Y
1
A
NH2
ARG
567
A
NH2
ARG
37
1
Y
1
A
CG
LYS
570
A
CG
LYS
40
1
Y
1
A
CD
LYS
570
A
CD
LYS
40
1
Y
1
A
CE
LYS
570
A
CE
LYS
40
1
Y
1
A
NZ
LYS
570
A
NZ
LYS
40
1
Y
1
A
CG
ARG
573
A
CG
ARG
43
1
Y
1
A
CD
ARG
573
A
CD
ARG
43
1
Y
1
A
NE
ARG
573
A
NE
ARG
43
1
Y
1
A
CZ
ARG
573
A
CZ
ARG
43
1
Y
1
A
NH1
ARG
573
A
NH1
ARG
43
1
Y
1
A
NH2
ARG
573
A
NH2
ARG
43
1
Y
1
A
CG
GLN
581
A
CG
GLN
51
1
Y
1
A
CD
GLN
581
A
CD
GLN
51
1
Y
1
A
OE1
GLN
581
A
OE1
GLN
51
1
Y
1
A
NE2
GLN
581
A
NE2
GLN
51
1
Y
1
A
CG
GLN
637
A
CG
GLN
107
1
Y
1
A
CD
GLN
637
A
CD
GLN
107
1
Y
1
A
OE1
GLN
637
A
OE1
GLN
107
1
Y
1
A
NE2
GLN
637
A
NE2
GLN
107
1
Y
1
A
CG
LYS
675
A
CG
LYS
145
1
Y
1
A
CD
LYS
675
A
CD
LYS
145
1
Y
1
A
CE
LYS
675
A
CE
LYS
145
1
Y
1
A
NZ
LYS
675
A
NZ
LYS
145
1
Y
1
A
CG
GLU
677
A
CG
GLU
147
1
Y
1
A
CD
GLU
677
A
CD
GLU
147
1
Y
1
A
OE1
GLU
677
A
OE1
GLU
147
1
Y
1
A
OE2
GLU
677
A
OE2
GLU
147
1
Y
1
A
CG
ASP
678
A
CG
ASP
148
1
Y
1
A
OD1
ASP
678
A
OD1
ASP
148
1
Y
1
A
OD2
ASP
678
A
OD2
ASP
148
1
Y
1
B
CG
LYS
100
B
CG
LYS
102
1
Y
1
B
CD
LYS
100
B
CD
LYS
102
1
Y
1
B
CE
LYS
100
B
CE
LYS
102
1
Y
1
B
NZ
LYS
100
B
NZ
LYS
102
1
Y
1
B
CG
GLU
112
B
CG
GLU
114
1
Y
1
B
CD
GLU
112
B
CD
GLU
114
1
Y
1
B
OE1
GLU
112
B
OE1
GLU
114
1
Y
1
B
OE2
GLU
112
B
OE2
GLU
114
1
Y
1
B
CG
LYS
128
B
CG
LYS
130
1
Y
1
B
CD
LYS
128
B
CD
LYS
130
1
Y
1
B
CE
LYS
128
B
CE
LYS
130
1
Y
1
B
NZ
LYS
128
B
NZ
LYS
130
1
Y
1
B
CG
MET
173
B
CG
MET
175
1
Y
1
B
SD
MET
173
B
SD
MET
175
1
Y
1
B
CE
MET
173
B
CE
MET
175
1
Y
1
A
ALA
576
A
ALA
46
1
Y
1
A
ASP
577
A
ASP
47
1
Y
1
A
SER
578
A
SER
48
1
Y
1
A
GLY
579
A
GLY
49
1
Y
1
A
THR
580
A
THR
50
1
Y
1
A
GLN
679
A
GLN
149
1
Y
1
A
HIS
680
A
HIS
150
1
Y
1
A
PHE
681
A
PHE
151
1
Y
1
A
GLU
682
A
GLU
152
1
Y
1
A
SER
683
A
SER
153
1
Y
1
B
GLY
174
B
GLY
176
1
Y
1
B
PRO
175
B
PRO
177
1
Y
1
B
GLY
176
B
GLY
178
1
Y
1
B
ALA
177
B
ALA
179
1
Y
1
B
ALA
178
B
ALA
180
1
Y
1
B
SER
179
B
SER
181
1
Y
1
B
GLY
180
B
GLY
182
1
Y
1
B
GLY
181
B
GLY
183
1
Y
1
B
GLU
182
B
GLU
184
1
Y
1
B
ARG
183
B
ARG
185
1
Y
1
B
PRO
184
B
PRO
186
1
Y
1
B
ASN
185
B
ASN
187
1
Y
1
B
LEU
186
B
LEU
188
1
Y
1
B
LYS
187
B
LYS
189
1
Y
1
B
ILE
188
B
ILE
190
1
Y
1
B
ASP
189
B
ASP
191
1
Y
1
B
SER
190
B
SER
192
1
Y
1
B
THR
191
B
THR
193
1
Y
1
B
PRO
192
B
PRO
194
1
Y
1
B
VAL
193
B
VAL
195
1
Y
1
B
LYS
194
B
LYS
196
1
Y
1
B
PRO
195
B
PRO
197
1
Y
1
B
ALA
196
B
ALA
198
1
Y
1
B
GLY
197
B
GLY
199
1
Y
1
B
GLY
198
B
GLY
200
1
Y
1
B
GLY
199
B
GLY
201
1
Y
1
B
CYS
200
B
CYS
202
1
Y
1
B
CYS
201
B
CYS
203
1
Y
1
B
LYS
122
73.33
41.86
1
B
ALA
155
78.64
-4.04
0.2073
0.1792
0.1807
2.300
45.826
1176
23530
5.00
99.94
0.24
1
FREE R-VALUE
MOLECULAR REPLACEMENT
25.09
0.90
1.11
3NKV, 5SZG
2.300
45.826
27
2612
33
0
2552
0.008
2615
1.104
3523
15.683
998
0.040
396
0.004
451
0.2979
0.2694
2.4048
144
2732
100.00
0.2599
0.2490
2.5315
144
2739
100.00
0.2771
0.2238
2.6901
145
2778
100.00
0.2668
0.2200
2.8978
145
2755
100.00
0.2679
0.2126
3.1893
147
2778
100.00
0.2433
0.1826
3.6507
147
2792
100.00
0.1523
0.1488
4.5988
149
2843
100.00
0.1799
0.1619
45.8347
155
2928
100.00
2.3
45.83
5SZH
23533
0.105
0.109
1
16.27
13.1
100
0.74
2.3
2.4
3.89
0.692
1
13.4
100
refinement
PHENIX
1.9_1692
data reduction
XDS
data scaling
XDS
phasing
PHASER
N
Structure of human Rab1b in complex with the bMERB domain of Mical-cL
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
5
N
N
A
GLY
531
A
GLY
1
HELX_P
A
ARG
573
A
ARG
43
1
AA1
43
A
ASP
582
A
ASP
52
HELX_P
A
LYS
633
A
LYS
103
1
AA2
52
A
GLU
634
A
GLU
104
HELX_P
A
LYS
638
A
LYS
108
5
AA3
5
A
ASP
639
A
ASP
109
HELX_P
A
ASP
678
A
ASP
148
1
AA4
40
B
GLY
20
B
GLY
22
HELX_P
B
ASP
31
B
ASP
33
1
AA5
12
B
GLN
67
B
GLN
69
HELX_P
B
ARG
69
B
ARG
71
5
AA6
3
B
PHE
70
B
PHE
72
HELX_P
B
SER
76
B
SER
78
1
AA7
7
B
ASP
92
B
ASP
94
HELX_P
B
ASN
98
B
ASN
100
1
AA8
7
B
ASN
98
B
ASN
100
HELX_P
B
ALA
110
B
ALA
112
1
AA9
13
B
LEU
125
B
LEU
127
HELX_P
B
LYS
129
B
LYS
131
5
AB1
5
B
ASP
132
B
ASP
134
HELX_P
B
LEU
143
B
LEU
145
1
AB2
12
B
ASN
157
B
ASN
159
HELX_P
B
MET
173
B
MET
175
1
AB3
17
metalc
2.039
B
SER
22
B
OG
SER
24
1_555
B
MG
302
D
MG
MG
1_555
metalc
2.121
B
THR
40
B
OG1
THR
42
1_555
B
MG
302
D
MG
MG
1_555
metalc
2.021
B
GNP
301
C
O1G
GNP
1_555
B
MG
302
D
MG
MG
1_555
metalc
2.040
B
GNP
301
C
O1B
GNP
1_555
B
MG
302
D
MG
MG
1_555
metalc
2.074
B
MG
302
D
MG
MG
1_555
B
HOH
404
F
O
HOH
1_555
metalc
2.119
B
MG
302
D
MG
MG
1_555
B
HOH
410
F
O
HOH
1_555
ENDOCYTOSIS
Mical-cL, DUF3585, Mical, Rab effector, Rab1b, protein transport, endocytosis
MICLK_HUMAN
UNP
1
534
Q6ZW33
KQEELKRLYKAQAIQRQLEEVEERQRASEIQGVRLEKALRGEADSGTQDEAQLLQEWFKLVLEKNKLMRYESELLIMAQE
LELEDHQSRLEQKLREKMLKEESQKDEKDLNEEQEVFTELMQVIEQRDKLVDSLEEQRIREKAEDQHFES
RAB1B_HUMAN
UNP
2
1
Q9H0U4
MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRG
AHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQ
AFMTMAAEIKKRMGPGAASGGERPNLKIDSTPVKPAGGGCC
534
683
5SZH
534
683
Q6ZW33
A
1
4
153
1
201
5SZH
1
201
Q9H0U4
B
2
3
203
1
expression tag
GLY
531
5SZH
A
Q6ZW33
UNP
1
1
expression tag
HIS
532
5SZH
A
Q6ZW33
UNP
2
1
expression tag
MET
533
5SZH
A
Q6ZW33
UNP
3
2
expression tag
GLY
-1
5SZH
B
Q9H0U4
UNP
1
2
expression tag
HIS
0
5SZH
B
Q9H0U4
UNP
2
6
anti-parallel
parallel
parallel
parallel
parallel
B
VAL
43
B
VAL
45
B
LEU
52
B
LEU
54
B
LYS
55
B
LYS
57
B
THR
64
B
THR
66
B
TYR
7
B
TYR
9
B
GLY
15
B
GLY
17
B
GLY
83
B
GLY
85
B
ASP
89
B
ASP
91
B
ASN
115
B
ASN
117
B
ASN
121
B
ASN
123
B
PHE
147
B
PHE
149
B
GLU
149
B
GLU
151
binding site for residue GNP B 301
B
GNP
301
Software
25
binding site for residue MG B 302
B
MG
302
Software
5
B
SER
17
B
SER
19
25
1_555
B
GLY
18
B
GLY
20
25
1_555
B
VAL
19
B
VAL
21
25
1_555
B
GLY
20
B
GLY
22
25
1_555
B
LYS
21
B
LYS
23
25
1_555
B
SER
22
B
SER
24
25
1_555
B
CYS
23
B
CYS
25
25
1_555
B
TYR
33
B
TYR
35
25
1_555
B
THR
34
B
THR
36
25
1_555
B
GLU
35
B
GLU
37
25
1_555
B
TYR
37
B
TYR
39
25
1_555
B
SER
39
B
SER
41
25
1_555
B
THR
40
B
THR
42
25
1_555
B
GLY
66
B
GLY
68
25
1_555
B
ASN
121
B
ASN
123
25
1_555
B
LYS
122
B
LYS
124
25
1_555
B
ASP
124
B
ASP
126
25
1_555
B
LEU
125
B
LEU
127
25
1_555
B
SER
151
B
SER
153
25
1_555
B
ALA
152
B
ALA
154
25
1_555
B
LYS
153
B
LYS
155
25
1_555
B
MG
302
D
MG
25
1_555
B
HOH
404
F
HOH
25
1_555
B
HOH
408
F
HOH
25
1_555
B
HOH
410
F
HOH
25
1_555
B
SER
22
B
SER
24
5
1_555
B
THR
40
B
THR
42
5
1_555
B
GNP
301
C
GNP
5
1_555
B
HOH
404
F
HOH
5
1_555
B
HOH
410
F
HOH
5
1_555
23
I 2 2 2