0.035633
0.000000
0.000000
0.000000
0.015804
0.000000
0.000000
0.000000
0.013133
0.00000
0.00000
0.00000
Taylor, A.B.
Hart, P.J.
Igumenova, T.I.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
28.064
63.276
76.143
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cd 2
112.411
CADMIUM ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CD
N
75
N
N
N
76
S
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
C
N
81
N
C
N
82
N
O
N
83
N
N
N
84
N
O
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
C
N
102
N
O
N
103
N
O
N
104
N
O
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
N
N
115
N
C
N
116
N
C
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
N
N
125
S
C
N
126
N
C
N
127
N
O
N
128
N
C
Y
129
N
C
Y
130
N
N
Y
131
N
C
Y
132
N
C
Y
133
N
N
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
O
N
146
N
H
N
147
N
H
N
148
N
N
N
149
S
C
N
150
N
C
N
151
N
O
N
152
S
C
N
153
N
C
N
154
N
C
N
155
N
C
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
S
C
N
172
N
C
N
173
N
O
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
C
N
178
N
O
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
N
N
193
S
C
N
194
N
C
N
195
N
O
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
N
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
N
N
218
S
C
N
219
N
C
N
220
N
O
N
221
N
C
N
222
N
C
N
223
N
S
N
224
N
C
N
225
N
O
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
N
N
238
S
C
N
239
N
C
N
240
N
O
N
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
Y
247
N
C
N
248
N
O
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
N
N
261
S
C
N
262
N
C
N
263
N
O
N
264
N
C
N
265
N
C
N
266
N
C
N
267
N
O
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
N
N
278
S
C
N
279
N
C
N
280
N
O
N
281
N
C
N
282
N
O
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
R
C
N
296
N
O
N
297
N
C
N
298
N
O
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
N
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
Y
321
N
C
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
N
N
336
S
C
N
337
N
C
N
338
N
O
N
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
N
346
N
O
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
N
364
N
C
N
365
N
C
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
US
Biochemistry
BICHAW
0033
1520-4995
56
3283
3295
10.1021/acs.biochem.7b00188
28574251
Non-Native Metal Ion Reveals the Role of Electrostatics in Synaptotagmin 1-Membrane Interactions.
2017
10.2210/pdb5t0r/pdb
pdb_00005t0r
100
1
IMAGE PLATE
2014-12-04
RIGAKU RAXIS HTC
Confocal Optics
SINGLE WAVELENGTH
M
x-ray
1
1.54178
1.0
1.54178
ROTATING ANODE
RIGAKU MICROMAX-007 HF
14525.588
Synaptotagmin-1
C2A domain residues 140-265
1
man
polymer
112.411
CADMIUM ION
1
syn
non-polymer
18.015
water
128
nat
water
Synaptotagmin I,SytI,p65
no
no
EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL
GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA
EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL
GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Mouse
sample
1
126
Syt1
10090
Mus musculus
469008
Escherichia coli
BL21(DE3)
Plasmid
Biological sequence
PET-SUMO
1
2.33
47.15
VAPOR DIFFUSION, SITTING DROP
0.01 M tri-sodium citrate, 16% PEG 6000
277
citation
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Database references
Data collection
Database references
Refinement description
1
0
2017-06-14
1
1
2017-07-05
1
2
2023-10-04
_citation.country
_citation.journal_id_ASTM
_citation.journal_id_CSD
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.title
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
N
RCSB
Y
RCSB
2016-08-16
REL
REL
CD
CADMIUM ION
HOH
water
3F00
PDB
experimental model
CD
301
2
CD
CD
301
A
HOH
401
3
HOH
HOH
401
A
HOH
402
3
HOH
HOH
402
A
HOH
403
3
HOH
HOH
403
A
HOH
404
3
HOH
HOH
404
A
HOH
405
3
HOH
HOH
405
A
HOH
406
3
HOH
HOH
406
A
HOH
407
3
HOH
HOH
407
A
HOH
408
3
HOH
HOH
408
A
HOH
409
3
HOH
HOH
409
A
HOH
410
3
HOH
HOH
410
A
HOH
411
3
HOH
HOH
411
A
HOH
412
3
HOH
HOH
412
A
HOH
413
3
HOH
HOH
413
A
HOH
414
3
HOH
HOH
414
A
HOH
415
3
HOH
HOH
415
A
HOH
416
3
HOH
HOH
416
A
HOH
417
3
HOH
HOH
417
A
HOH
418
3
HOH
HOH
418
A
HOH
419
3
HOH
HOH
419
A
HOH
420
3
HOH
HOH
420
A
HOH
421
3
HOH
HOH
421
A
HOH
422
3
HOH
HOH
422
A
HOH
423
3
HOH
HOH
423
A
HOH
424
3
HOH
HOH
424
A
HOH
425
3
HOH
HOH
425
A
HOH
426
3
HOH
HOH
426
A
HOH
427
3
HOH
HOH
427
A
HOH
428
3
HOH
HOH
428
A
HOH
429
3
HOH
HOH
429
A
HOH
430
3
HOH
HOH
430
A
HOH
431
3
HOH
HOH
431
A
HOH
432
3
HOH
HOH
432
A
HOH
433
3
HOH
HOH
433
A
HOH
434
3
HOH
HOH
434
A
HOH
435
3
HOH
HOH
435
A
HOH
436
3
HOH
HOH
436
A
HOH
437
3
HOH
HOH
437
A
HOH
438
3
HOH
HOH
438
A
HOH
439
3
HOH
HOH
439
A
HOH
440
3
HOH
HOH
440
A
HOH
441
3
HOH
HOH
441
A
HOH
442
3
HOH
HOH
442
A
HOH
443
3
HOH
HOH
443
A
HOH
444
3
HOH
HOH
444
A
HOH
445
3
HOH
HOH
445
A
HOH
446
3
HOH
HOH
446
A
HOH
447
3
HOH
HOH
447
A
HOH
448
3
HOH
HOH
448
A
HOH
449
3
HOH
HOH
449
A
HOH
450
3
HOH
HOH
450
A
HOH
451
3
HOH
HOH
451
A
HOH
452
3
HOH
HOH
452
A
HOH
453
3
HOH
HOH
453
A
HOH
454
3
HOH
HOH
454
A
HOH
455
3
HOH
HOH
455
A
HOH
456
3
HOH
HOH
456
A
HOH
457
3
HOH
HOH
457
A
HOH
458
3
HOH
HOH
458
A
HOH
459
3
HOH
HOH
459
A
HOH
460
3
HOH
HOH
460
A
HOH
461
3
HOH
HOH
461
A
HOH
462
3
HOH
HOH
462
A
HOH
463
3
HOH
HOH
463
A
HOH
464
3
HOH
HOH
464
A
HOH
465
3
HOH
HOH
465
A
HOH
466
3
HOH
HOH
466
A
HOH
467
3
HOH
HOH
467
A
HOH
468
3
HOH
HOH
468
A
HOH
469
3
HOH
HOH
469
A
HOH
470
3
HOH
HOH
470
A
HOH
471
3
HOH
HOH
471
A
HOH
472
3
HOH
HOH
472
A
HOH
473
3
HOH
HOH
473
A
HOH
474
3
HOH
HOH
474
A
HOH
475
3
HOH
HOH
475
A
HOH
476
3
HOH
HOH
476
A
HOH
477
3
HOH
HOH
477
A
HOH
478
3
HOH
HOH
478
A
HOH
479
3
HOH
HOH
479
A
HOH
480
3
HOH
HOH
480
A
HOH
481
3
HOH
HOH
481
A
HOH
482
3
HOH
HOH
482
A
HOH
483
3
HOH
HOH
483
A
HOH
484
3
HOH
HOH
484
A
HOH
485
3
HOH
HOH
485
A
HOH
486
3
HOH
HOH
486
A
HOH
487
3
HOH
HOH
487
A
HOH
488
3
HOH
HOH
488
A
HOH
489
3
HOH
HOH
489
A
HOH
490
3
HOH
HOH
490
A
HOH
491
3
HOH
HOH
491
A
HOH
492
3
HOH
HOH
492
A
HOH
493
3
HOH
HOH
493
A
HOH
494
3
HOH
HOH
494
A
HOH
495
3
HOH
HOH
495
A
HOH
496
3
HOH
HOH
496
A
HOH
504
3
HOH
HOH
497
A
HOH
497
3
HOH
HOH
498
A
HOH
498
3
HOH
HOH
499
A
HOH
501
3
HOH
HOH
500
A
HOH
499
3
HOH
HOH
501
A
HOH
500
3
HOH
HOH
502
A
HOH
502
3
HOH
HOH
503
A
HOH
503
3
HOH
HOH
504
A
HOH
505
3
HOH
HOH
505
A
HOH
506
3
HOH
HOH
506
A
HOH
507
3
HOH
HOH
507
A
HOH
509
3
HOH
HOH
508
A
HOH
510
3
HOH
HOH
509
A
HOH
508
3
HOH
HOH
510
A
HOH
511
3
HOH
HOH
511
A
HOH
512
3
HOH
HOH
512
A
HOH
513
3
HOH
HOH
513
A
HOH
514
3
HOH
HOH
514
A
HOH
515
3
HOH
HOH
515
A
HOH
516
3
HOH
HOH
516
A
HOH
517
3
HOH
HOH
517
A
HOH
518
3
HOH
HOH
518
A
HOH
519
3
HOH
HOH
519
A
HOH
520
3
HOH
HOH
520
A
HOH
521
3
HOH
HOH
521
A
HOH
522
3
HOH
HOH
522
A
HOH
523
3
HOH
HOH
523
A
HOH
524
3
HOH
HOH
524
A
HOH
525
3
HOH
HOH
525
A
HOH
526
3
HOH
HOH
526
A
HOH
527
3
HOH
HOH
527
A
HOH
528
3
HOH
HOH
528
A
n
1
140
A
LYS
141
n
2
LYS
141
A
LEU
142
n
3
LEU
142
A
GLY
143
n
4
GLY
143
A
LYS
144
n
5
LYS
144
A
LEU
145
n
6
LEU
145
A
GLN
146
n
7
GLN
146
A
TYR
147
n
8
TYR
147
A
SER
148
n
9
SER
148
A
LEU
149
n
10
LEU
149
A
ASP
150
n
11
ASP
150
A
TYR
151
n
12
TYR
151
A
ASP
152
n
13
ASP
152
A
PHE
153
n
14
PHE
153
A
GLN
154
n
15
GLN
154
A
ASN
155
n
16
ASN
155
A
ASN
156
n
17
ASN
156
A
GLN
157
n
18
GLN
157
A
LEU
158
n
19
LEU
158
A
LEU
159
n
20
LEU
159
A
VAL
160
n
21
VAL
160
A
GLY
161
n
22
GLY
161
A
ILE
162
n
23
ILE
162
A
ILE
163
n
24
ILE
163
A
GLN
164
n
25
GLN
164
A
ALA
165
n
26
ALA
165
A
ALA
166
n
27
ALA
166
A
GLU
167
n
28
GLU
167
A
LEU
168
n
29
LEU
168
A
PRO
169
n
30
PRO
169
A
ALA
170
n
31
ALA
170
A
LEU
171
n
32
LEU
171
A
ASP
172
n
33
ASP
172
A
MET
173
n
34
MET
173
A
GLY
174
n
35
GLY
174
A
GLY
175
n
36
GLY
175
A
THR
176
n
37
THR
176
A
SER
177
n
38
SER
177
A
ASP
178
n
39
ASP
178
A
PRO
179
n
40
PRO
179
A
TYR
180
n
41
TYR
180
A
VAL
181
n
42
VAL
181
A
LYS
182
n
43
LYS
182
A
VAL
183
n
44
VAL
183
A
PHE
184
n
45
PHE
184
A
LEU
185
n
46
LEU
185
A
LEU
186
n
47
LEU
186
A
PRO
187
n
48
PRO
187
A
ASP
188
n
49
ASP
188
A
LYS
189
n
50
LYS
189
A
LYS
190
n
51
LYS
190
A
LYS
191
n
52
LYS
191
A
LYS
192
n
53
LYS
192
A
PHE
193
n
54
PHE
193
A
GLU
194
n
55
GLU
194
A
THR
195
n
56
THR
195
A
LYS
196
n
57
LYS
196
A
VAL
197
n
58
VAL
197
A
HIS
198
n
59
HIS
198
A
ARG
199
n
60
ARG
199
A
LYS
200
n
61
LYS
200
A
THR
201
n
62
THR
201
A
LEU
202
n
63
LEU
202
A
ASN
203
n
64
ASN
203
A
PRO
204
n
65
PRO
204
A
VAL
205
n
66
VAL
205
A
PHE
206
n
67
PHE
206
A
ASN
207
n
68
ASN
207
A
GLU
208
n
69
GLU
208
A
GLN
209
n
70
GLN
209
A
PHE
210
n
71
PHE
210
A
THR
211
n
72
THR
211
A
PHE
212
n
73
PHE
212
A
LYS
213
n
74
LYS
213
A
VAL
214
n
75
VAL
214
A
PRO
215
n
76
PRO
215
A
TYR
216
n
77
TYR
216
A
SER
217
n
78
SER
217
A
GLU
218
n
79
GLU
218
A
LEU
219
n
80
LEU
219
A
GLY
220
n
81
GLY
220
A
GLY
221
n
82
GLY
221
A
LYS
222
n
83
LYS
222
A
THR
223
n
84
THR
223
A
LEU
224
n
85
LEU
224
A
VAL
225
n
86
VAL
225
A
MET
226
n
87
MET
226
A
ALA
227
n
88
ALA
227
A
VAL
228
n
89
VAL
228
A
TYR
229
n
90
TYR
229
A
ASP
230
n
91
ASP
230
A
PHE
231
n
92
PHE
231
A
ASP
232
n
93
ASP
232
A
ARG
233
n
94
ARG
233
A
PHE
234
n
95
PHE
234
A
SER
235
n
96
SER
235
A
LYS
236
n
97
LYS
236
A
HIS
237
n
98
HIS
237
A
ASP
238
n
99
ASP
238
A
ILE
239
n
100
ILE
239
A
ILE
240
n
101
ILE
240
A
GLY
241
n
102
GLY
241
A
GLU
242
n
103
GLU
242
A
PHE
243
n
104
PHE
243
A
LYS
244
n
105
LYS
244
A
VAL
245
n
106
VAL
245
A
PRO
246
n
107
PRO
246
A
MET
247
n
108
MET
247
A
ASN
248
n
109
ASN
248
A
THR
249
n
110
THR
249
A
VAL
250
n
111
VAL
250
A
ASP
251
n
112
ASP
251
A
PHE
252
n
113
PHE
252
A
GLY
253
n
114
GLY
253
A
HIS
254
n
115
HIS
254
A
VAL
255
n
116
VAL
255
A
THR
256
n
117
THR
256
A
GLU
257
n
118
GLU
257
A
GLU
258
n
119
GLU
258
A
TRP
259
n
120
TRP
259
A
ARG
260
n
121
ARG
260
A
ASP
261
n
122
ASP
261
A
LEU
262
n
123
LEU
262
A
GLN
263
n
124
GLN
263
A
SER
264
n
125
SER
264
A
ALA
265
n
126
ALA
265
A
author_and_software_defined_assembly
PISA
1
monomeric
A
ASP
172
A
OD2
ASP
33
1_555
A
CD
301
B
CD
CD
1_555
A
ASP
178
A
OD2
ASP
39
1_555
76.8
A
ASP
172
A
OD2
ASP
33
1_555
A
CD
301
B
CD
CD
1_555
A
ASP
230
A
OD1
ASP
91
1_555
97.0
A
ASP
178
A
OD2
ASP
39
1_555
A
CD
301
B
CD
CD
1_555
A
ASP
230
A
OD1
ASP
91
1_555
106.2
A
ASP
172
A
OD2
ASP
33
1_555
A
CD
301
B
CD
CD
1_555
A
ASP
230
A
OD2
ASP
91
1_555
106.5
A
ASP
178
A
OD2
ASP
39
1_555
A
CD
301
B
CD
CD
1_555
A
ASP
230
A
OD2
ASP
91
1_555
157.5
A
ASP
230
A
OD1
ASP
91
1_555
A
CD
301
B
CD
CD
1_555
A
ASP
230
A
OD2
ASP
91
1_555
51.5
A
ASP
172
A
OD2
ASP
33
1_555
A
CD
301
B
CD
CD
1_555
A
PHE
231
A
O
PHE
92
1_555
162.5
A
ASP
178
A
OD2
ASP
39
1_555
A
CD
301
B
CD
CD
1_555
A
PHE
231
A
O
PHE
92
1_555
85.8
A
ASP
230
A
OD1
ASP
91
1_555
A
CD
301
B
CD
CD
1_555
A
PHE
231
A
O
PHE
92
1_555
88.6
A
ASP
230
A
OD2
ASP
91
1_555
A
CD
301
B
CD
CD
1_555
A
PHE
231
A
O
PHE
92
1_555
89.9
A
ASP
172
A
OD2
ASP
33
1_555
A
CD
301
B
CD
CD
1_555
A
HOH
403
C
O
HOH
1_555
91.0
A
ASP
178
A
OD2
ASP
39
1_555
A
CD
301
B
CD
CD
1_555
A
HOH
403
C
O
HOH
1_555
90.8
A
ASP
230
A
OD1
ASP
91
1_555
A
CD
301
B
CD
CD
1_555
A
HOH
403
C
O
HOH
1_555
162.4
A
ASP
230
A
OD2
ASP
91
1_555
A
CD
301
B
CD
CD
1_555
A
HOH
403
C
O
HOH
1_555
111.2
A
PHE
231
A
O
PHE
92
1_555
A
CD
301
B
CD
CD
1_555
A
HOH
403
C
O
HOH
1_555
88.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
PHE
210
A
O
PHE
71
A
N
VAL
160
A
N
VAL
21
A
O
LEU
159
A
O
LEU
20
A
N
ASP
150
A
N
ASP
11
A
N
LEU
145
A
N
LEU
6
A
O
ARG
260
A
O
ARG
121
A
O
PHE
193
A
O
PHE
54
A
N
VAL
183
A
N
VAL
44
A
N
PHE
184
A
N
PHE
45
A
O
VAL
225
A
O
VAL
86
A
N
VAL
228
A
N
VAL
89
A
O
ILE
240
A
O
ILE
101
1
A
GLU
140
A
GLU
1
1
Y
1
A
LYS
189
73.63
-21.01
0.2288
0.1864
0.1906
1.95
38.07
1779
10031
9.97
93.76
0.16
1
THROUGHOUT
1.91
MOLECULAR REPLACEMENT
22.53
0.90
1.11
3F00
1.95
38.07
128
1146
1
0
1017
0.008
1042
1.134
1407
13.904
388
0.052
152
0.006
181
0.2881
0.2451
2.0057
89
819
61.00
0.2449
0.2386
2.0647
139
1213
92.00
0.2682
0.2253
2.1314
134
1187
92.00
0.2335
0.2160
2.2075
142
1241
94.00
0.2475
0.2025
2.2959
140
1253
95.00
0.2460
0.2032
2.4004
132
1251
95.00
0.2341
0.2050
2.5269
153
1305
98.00
0.2369
0.2223
2.6852
139
1275
98.00
0.3311
0.2225
2.8925
135
1321
99.00
0.2555
0.2114
3.1834
148
1302
99.00
0.2450
0.1635
3.6438
139
1311
99.00
0.1992
0.1445
4.5895
146
1297
99.00
0.1674
0.1603
38.0787
143
1292
98.00
24.19
1.95
38.07
5T0R
10075
0.107
1
13
4.2
96.9
0.373
1.95
2.06
3.2
1
3.5
85.0
refinement
PHENIX
1.10_2155
data reduction
XDS
data scaling
XDS
phasing
PHASER
N
Synaptotagmin 1 C2A domain, cadmium-bound
1
N
N
2
N
N
3
N
N
A
PRO
215
A
PRO
76
HELX_P
A
GLY
220
A
GLY
81
1
AA1
6
A
ASN
248
A
ASN
109
HELX_P
A
VAL
250
A
VAL
111
5
AA2
3
metalc
2.423
A
ASP
172
A
OD2
ASP
33
1_555
A
CD
301
B
CD
CD
1_555
metalc
2.401
A
ASP
178
A
OD2
ASP
39
1_555
A
CD
301
B
CD
CD
1_555
metalc
2.441
A
ASP
230
A
OD1
ASP
91
1_555
A
CD
301
B
CD
CD
1_555
metalc
2.607
A
ASP
230
A
OD2
ASP
91
1_555
A
CD
301
B
CD
CD
1_555
metalc
2.519
A
PHE
231
A
O
PHE
92
1_555
A
CD
301
B
CD
CD
1_555
metalc
2.574
A
CD
301
B
CD
CD
1_555
A
HOH
403
C
O
HOH
1_555
METAL BINDING PROTEIN
METAL BINDING PROTEIN
A
LEU
186
A
LEU
47
1
A
PRO
187
A
PRO
48
7.46
SYT1_MOUSE
UNP
1
140
P46096
EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL
GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA
140
265
5T0R
140
265
P46096
A
1
1
126
4
4
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
205
A
VAL
66
A
LYS
213
A
LYS
74
A
GLN
157
A
GLN
18
A
ALA
166
A
ALA
27
A
LYS
144
A
LYS
5
A
ASP
152
A
ASP
13
A
THR
256
A
THR
117
A
ASP
261
A
ASP
122
A
PHE
193
A
PHE
54
A
GLU
194
A
GLU
55
A
PRO
179
A
PRO
40
A
LEU
186
A
LEU
47
A
THR
223
A
THR
84
A
ASP
230
A
ASP
91
A
ILE
239
A
ILE
100
A
PRO
246
A
PRO
107
binding site for residue CD A 301
A
CD
301
Software
5
A
ASP
172
A
ASP
33
5
1_555
A
ASP
178
A
ASP
39
5
1_555
A
ASP
230
A
ASP
91
5
1_555
A
PHE
231
A
PHE
92
5
1_555
A
HOH
403
C
HOH
5
1_555
19
P 21 21 21