0.035633 0.000000 0.000000 0.000000 0.015804 0.000000 0.000000 0.000000 0.013133 0.00000 0.00000 0.00000 Taylor, A.B. Hart, P.J. Igumenova, T.I. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 28.064 63.276 76.143 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cd 2 112.411 CADMIUM ION non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CD N 75 N N N 76 S C N 77 N C N 78 N O N 79 N C N 80 N C N 81 N C N 82 N O N 83 N N N 84 N O N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N N N 96 S C N 97 N C N 98 N O N 99 N C N 100 N C N 101 N C N 102 N O N 103 N O N 104 N O N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N N N 115 N C N 116 N C N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N N N 125 S C N 126 N C N 127 N O N 128 N C Y 129 N C Y 130 N N Y 131 N C Y 132 N C Y 133 N N N 134 N O N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N O N 146 N H N 147 N H N 148 N N N 149 S C N 150 N C N 151 N O N 152 S C N 153 N C N 154 N C N 155 N C N 156 N O N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 S C N 172 N C N 173 N O N 174 N C N 175 N C N 176 N C N 177 N C N 178 N O N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N N N 193 S C N 194 N C N 195 N O N 196 N C N 197 N C N 198 N C N 199 N C N 200 N N N 201 N O N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N N N 218 S C N 219 N C N 220 N O N 221 N C N 222 N C N 223 N S N 224 N C N 225 N O N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N N N 238 S C N 239 N C N 240 N O N 241 N C Y 242 N C Y 243 N C Y 244 N C Y 245 N C Y 246 N C Y 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N N N 261 S C N 262 N C N 263 N O N 264 N C N 265 N C N 266 N C N 267 N O N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N N N 278 S C N 279 N C N 280 N O N 281 N C N 282 N O N 283 N O N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 R C N 296 N O N 297 N C N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 N C Y 313 N C Y 314 N C Y 315 N C Y 316 N N Y 317 N C Y 318 N C Y 319 N C Y 320 N C Y 321 N C N 322 N O N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N N N 336 S C N 337 N C N 338 N O N 339 N C Y 340 N C Y 341 N C Y 342 N C Y 343 N C Y 344 N C Y 345 N C N 346 N O N 347 N O N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N N N 360 S C N 361 N C N 362 N O N 363 N C N 364 N C N 365 N C N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N doub N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing Y 127 N sing Y 128 N doub Y 129 N doub N 130 N sing Y 131 N sing N 132 N sing Y 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N doub N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N doub N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N doub N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing Y 235 N doub Y 236 N sing Y 237 N sing N 238 N sing Y 239 N doub N 240 N sing Y 241 N doub N 242 N sing Y 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N doub N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing Y 304 N doub Y 305 N sing Y 306 N sing N 307 N sing Y 308 N doub Y 309 N sing Y 310 N sing N 311 N sing Y 312 N sing Y 313 N doub N 314 N sing Y 315 N doub N 316 N sing Y 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing Y 332 N doub Y 333 N sing Y 334 N sing N 335 N sing Y 336 N doub N 337 N sing Y 338 N doub N 339 N sing Y 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N doub N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing US Biochemistry BICHAW 0033 1520-4995 56 3283 3295 10.1021/acs.biochem.7b00188 28574251 Non-Native Metal Ion Reveals the Role of Electrostatics in Synaptotagmin 1-Membrane Interactions. 2017 10.2210/pdb5t0r/pdb pdb_00005t0r 100 1 IMAGE PLATE 2014-12-04 RIGAKU RAXIS HTC Confocal Optics SINGLE WAVELENGTH M x-ray 1 1.54178 1.0 1.54178 ROTATING ANODE RIGAKU MICROMAX-007 HF 14525.588 Synaptotagmin-1 C2A domain residues 140-265 1 man polymer 112.411 CADMIUM ION 1 syn non-polymer 18.015 water 128 nat water Synaptotagmin I,SytI,p65 no no EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Mouse sample 1 126 Syt1 10090 Mus musculus 469008 Escherichia coli BL21(DE3) Plasmid Biological sequence PET-SUMO 1 2.33 47.15 VAPOR DIFFUSION, SITTING DROP 0.01 M tri-sodium citrate, 16% PEG 6000 277 citation chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Database references Data collection Database references Refinement description 1 0 2017-06-14 1 1 2017-07-05 1 2 2023-10-04 _citation.country _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_volume _citation.page_first _citation.page_last _citation.title _database_2.pdbx_DOI _database_2.pdbx_database_accession N RCSB Y RCSB 2016-08-16 REL REL CD CADMIUM ION HOH water 3F00 PDB experimental model CD 301 2 CD CD 301 A HOH 401 3 HOH HOH 401 A HOH 402 3 HOH HOH 402 A HOH 403 3 HOH HOH 403 A HOH 404 3 HOH HOH 404 A HOH 405 3 HOH HOH 405 A HOH 406 3 HOH HOH 406 A HOH 407 3 HOH HOH 407 A HOH 408 3 HOH HOH 408 A HOH 409 3 HOH HOH 409 A HOH 410 3 HOH HOH 410 A HOH 411 3 HOH HOH 411 A HOH 412 3 HOH HOH 412 A HOH 413 3 HOH HOH 413 A HOH 414 3 HOH HOH 414 A HOH 415 3 HOH HOH 415 A HOH 416 3 HOH HOH 416 A HOH 417 3 HOH HOH 417 A HOH 418 3 HOH HOH 418 A HOH 419 3 HOH HOH 419 A HOH 420 3 HOH HOH 420 A HOH 421 3 HOH HOH 421 A HOH 422 3 HOH HOH 422 A HOH 423 3 HOH HOH 423 A HOH 424 3 HOH HOH 424 A HOH 425 3 HOH HOH 425 A HOH 426 3 HOH HOH 426 A HOH 427 3 HOH HOH 427 A HOH 428 3 HOH HOH 428 A HOH 429 3 HOH HOH 429 A HOH 430 3 HOH HOH 430 A HOH 431 3 HOH HOH 431 A HOH 432 3 HOH HOH 432 A HOH 433 3 HOH HOH 433 A HOH 434 3 HOH HOH 434 A HOH 435 3 HOH HOH 435 A HOH 436 3 HOH HOH 436 A HOH 437 3 HOH HOH 437 A HOH 438 3 HOH HOH 438 A HOH 439 3 HOH HOH 439 A HOH 440 3 HOH HOH 440 A HOH 441 3 HOH HOH 441 A HOH 442 3 HOH HOH 442 A HOH 443 3 HOH HOH 443 A HOH 444 3 HOH HOH 444 A HOH 445 3 HOH HOH 445 A HOH 446 3 HOH HOH 446 A HOH 447 3 HOH HOH 447 A HOH 448 3 HOH HOH 448 A HOH 449 3 HOH HOH 449 A HOH 450 3 HOH HOH 450 A HOH 451 3 HOH HOH 451 A HOH 452 3 HOH HOH 452 A HOH 453 3 HOH HOH 453 A HOH 454 3 HOH HOH 454 A HOH 455 3 HOH HOH 455 A HOH 456 3 HOH HOH 456 A HOH 457 3 HOH HOH 457 A HOH 458 3 HOH HOH 458 A HOH 459 3 HOH HOH 459 A HOH 460 3 HOH HOH 460 A HOH 461 3 HOH HOH 461 A HOH 462 3 HOH HOH 462 A HOH 463 3 HOH HOH 463 A HOH 464 3 HOH HOH 464 A HOH 465 3 HOH HOH 465 A HOH 466 3 HOH HOH 466 A HOH 467 3 HOH HOH 467 A HOH 468 3 HOH HOH 468 A HOH 469 3 HOH HOH 469 A HOH 470 3 HOH HOH 470 A HOH 471 3 HOH HOH 471 A HOH 472 3 HOH HOH 472 A HOH 473 3 HOH HOH 473 A HOH 474 3 HOH HOH 474 A HOH 475 3 HOH HOH 475 A HOH 476 3 HOH HOH 476 A HOH 477 3 HOH HOH 477 A HOH 478 3 HOH HOH 478 A HOH 479 3 HOH HOH 479 A HOH 480 3 HOH HOH 480 A HOH 481 3 HOH HOH 481 A HOH 482 3 HOH HOH 482 A HOH 483 3 HOH HOH 483 A HOH 484 3 HOH HOH 484 A HOH 485 3 HOH HOH 485 A HOH 486 3 HOH HOH 486 A HOH 487 3 HOH HOH 487 A HOH 488 3 HOH HOH 488 A HOH 489 3 HOH HOH 489 A HOH 490 3 HOH HOH 490 A HOH 491 3 HOH HOH 491 A HOH 492 3 HOH HOH 492 A HOH 493 3 HOH HOH 493 A HOH 494 3 HOH HOH 494 A HOH 495 3 HOH HOH 495 A HOH 496 3 HOH HOH 496 A HOH 504 3 HOH HOH 497 A HOH 497 3 HOH HOH 498 A HOH 498 3 HOH HOH 499 A HOH 501 3 HOH HOH 500 A HOH 499 3 HOH HOH 501 A HOH 500 3 HOH HOH 502 A HOH 502 3 HOH HOH 503 A HOH 503 3 HOH HOH 504 A HOH 505 3 HOH HOH 505 A HOH 506 3 HOH HOH 506 A HOH 507 3 HOH HOH 507 A HOH 509 3 HOH HOH 508 A HOH 510 3 HOH HOH 509 A HOH 508 3 HOH HOH 510 A HOH 511 3 HOH HOH 511 A HOH 512 3 HOH HOH 512 A HOH 513 3 HOH HOH 513 A HOH 514 3 HOH HOH 514 A HOH 515 3 HOH HOH 515 A HOH 516 3 HOH HOH 516 A HOH 517 3 HOH HOH 517 A HOH 518 3 HOH HOH 518 A HOH 519 3 HOH HOH 519 A HOH 520 3 HOH HOH 520 A HOH 521 3 HOH HOH 521 A HOH 522 3 HOH HOH 522 A HOH 523 3 HOH HOH 523 A HOH 524 3 HOH HOH 524 A HOH 525 3 HOH HOH 525 A HOH 526 3 HOH HOH 526 A HOH 527 3 HOH HOH 527 A HOH 528 3 HOH HOH 528 A n 1 140 A LYS 141 n 2 LYS 141 A LEU 142 n 3 LEU 142 A GLY 143 n 4 GLY 143 A LYS 144 n 5 LYS 144 A LEU 145 n 6 LEU 145 A GLN 146 n 7 GLN 146 A TYR 147 n 8 TYR 147 A SER 148 n 9 SER 148 A LEU 149 n 10 LEU 149 A ASP 150 n 11 ASP 150 A TYR 151 n 12 TYR 151 A ASP 152 n 13 ASP 152 A PHE 153 n 14 PHE 153 A GLN 154 n 15 GLN 154 A ASN 155 n 16 ASN 155 A ASN 156 n 17 ASN 156 A GLN 157 n 18 GLN 157 A LEU 158 n 19 LEU 158 A LEU 159 n 20 LEU 159 A VAL 160 n 21 VAL 160 A GLY 161 n 22 GLY 161 A ILE 162 n 23 ILE 162 A ILE 163 n 24 ILE 163 A GLN 164 n 25 GLN 164 A ALA 165 n 26 ALA 165 A ALA 166 n 27 ALA 166 A GLU 167 n 28 GLU 167 A LEU 168 n 29 LEU 168 A PRO 169 n 30 PRO 169 A ALA 170 n 31 ALA 170 A LEU 171 n 32 LEU 171 A ASP 172 n 33 ASP 172 A MET 173 n 34 MET 173 A GLY 174 n 35 GLY 174 A GLY 175 n 36 GLY 175 A THR 176 n 37 THR 176 A SER 177 n 38 SER 177 A ASP 178 n 39 ASP 178 A PRO 179 n 40 PRO 179 A TYR 180 n 41 TYR 180 A VAL 181 n 42 VAL 181 A LYS 182 n 43 LYS 182 A VAL 183 n 44 VAL 183 A PHE 184 n 45 PHE 184 A LEU 185 n 46 LEU 185 A LEU 186 n 47 LEU 186 A PRO 187 n 48 PRO 187 A ASP 188 n 49 ASP 188 A LYS 189 n 50 LYS 189 A LYS 190 n 51 LYS 190 A LYS 191 n 52 LYS 191 A LYS 192 n 53 LYS 192 A PHE 193 n 54 PHE 193 A GLU 194 n 55 GLU 194 A THR 195 n 56 THR 195 A LYS 196 n 57 LYS 196 A VAL 197 n 58 VAL 197 A HIS 198 n 59 HIS 198 A ARG 199 n 60 ARG 199 A LYS 200 n 61 LYS 200 A THR 201 n 62 THR 201 A LEU 202 n 63 LEU 202 A ASN 203 n 64 ASN 203 A PRO 204 n 65 PRO 204 A VAL 205 n 66 VAL 205 A PHE 206 n 67 PHE 206 A ASN 207 n 68 ASN 207 A GLU 208 n 69 GLU 208 A GLN 209 n 70 GLN 209 A PHE 210 n 71 PHE 210 A THR 211 n 72 THR 211 A PHE 212 n 73 PHE 212 A LYS 213 n 74 LYS 213 A VAL 214 n 75 VAL 214 A PRO 215 n 76 PRO 215 A TYR 216 n 77 TYR 216 A SER 217 n 78 SER 217 A GLU 218 n 79 GLU 218 A LEU 219 n 80 LEU 219 A GLY 220 n 81 GLY 220 A GLY 221 n 82 GLY 221 A LYS 222 n 83 LYS 222 A THR 223 n 84 THR 223 A LEU 224 n 85 LEU 224 A VAL 225 n 86 VAL 225 A MET 226 n 87 MET 226 A ALA 227 n 88 ALA 227 A VAL 228 n 89 VAL 228 A TYR 229 n 90 TYR 229 A ASP 230 n 91 ASP 230 A PHE 231 n 92 PHE 231 A ASP 232 n 93 ASP 232 A ARG 233 n 94 ARG 233 A PHE 234 n 95 PHE 234 A SER 235 n 96 SER 235 A LYS 236 n 97 LYS 236 A HIS 237 n 98 HIS 237 A ASP 238 n 99 ASP 238 A ILE 239 n 100 ILE 239 A ILE 240 n 101 ILE 240 A GLY 241 n 102 GLY 241 A GLU 242 n 103 GLU 242 A PHE 243 n 104 PHE 243 A LYS 244 n 105 LYS 244 A VAL 245 n 106 VAL 245 A PRO 246 n 107 PRO 246 A MET 247 n 108 MET 247 A ASN 248 n 109 ASN 248 A THR 249 n 110 THR 249 A VAL 250 n 111 VAL 250 A ASP 251 n 112 ASP 251 A PHE 252 n 113 PHE 252 A GLY 253 n 114 GLY 253 A HIS 254 n 115 HIS 254 A VAL 255 n 116 VAL 255 A THR 256 n 117 THR 256 A GLU 257 n 118 GLU 257 A GLU 258 n 119 GLU 258 A TRP 259 n 120 TRP 259 A ARG 260 n 121 ARG 260 A ASP 261 n 122 ASP 261 A LEU 262 n 123 LEU 262 A GLN 263 n 124 GLN 263 A SER 264 n 125 SER 264 A ALA 265 n 126 ALA 265 A author_and_software_defined_assembly PISA 1 monomeric A ASP 172 A OD2 ASP 33 1_555 A CD 301 B CD CD 1_555 A ASP 178 A OD2 ASP 39 1_555 76.8 A ASP 172 A OD2 ASP 33 1_555 A CD 301 B CD CD 1_555 A ASP 230 A OD1 ASP 91 1_555 97.0 A ASP 178 A OD2 ASP 39 1_555 A CD 301 B CD CD 1_555 A ASP 230 A OD1 ASP 91 1_555 106.2 A ASP 172 A OD2 ASP 33 1_555 A CD 301 B CD CD 1_555 A ASP 230 A OD2 ASP 91 1_555 106.5 A ASP 178 A OD2 ASP 39 1_555 A CD 301 B CD CD 1_555 A ASP 230 A OD2 ASP 91 1_555 157.5 A ASP 230 A OD1 ASP 91 1_555 A CD 301 B CD CD 1_555 A ASP 230 A OD2 ASP 91 1_555 51.5 A ASP 172 A OD2 ASP 33 1_555 A CD 301 B CD CD 1_555 A PHE 231 A O PHE 92 1_555 162.5 A ASP 178 A OD2 ASP 39 1_555 A CD 301 B CD CD 1_555 A PHE 231 A O PHE 92 1_555 85.8 A ASP 230 A OD1 ASP 91 1_555 A CD 301 B CD CD 1_555 A PHE 231 A O PHE 92 1_555 88.6 A ASP 230 A OD2 ASP 91 1_555 A CD 301 B CD CD 1_555 A PHE 231 A O PHE 92 1_555 89.9 A ASP 172 A OD2 ASP 33 1_555 A CD 301 B CD CD 1_555 A HOH 403 C O HOH 1_555 91.0 A ASP 178 A OD2 ASP 39 1_555 A CD 301 B CD CD 1_555 A HOH 403 C O HOH 1_555 90.8 A ASP 230 A OD1 ASP 91 1_555 A CD 301 B CD CD 1_555 A HOH 403 C O HOH 1_555 162.4 A ASP 230 A OD2 ASP 91 1_555 A CD 301 B CD CD 1_555 A HOH 403 C O HOH 1_555 111.2 A PHE 231 A O PHE 92 1_555 A CD 301 B CD CD 1_555 A HOH 403 C O HOH 1_555 88.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O PHE 210 A O PHE 71 A N VAL 160 A N VAL 21 A O LEU 159 A O LEU 20 A N ASP 150 A N ASP 11 A N LEU 145 A N LEU 6 A O ARG 260 A O ARG 121 A O PHE 193 A O PHE 54 A N VAL 183 A N VAL 44 A N PHE 184 A N PHE 45 A O VAL 225 A O VAL 86 A N VAL 228 A N VAL 89 A O ILE 240 A O ILE 101 1 A GLU 140 A GLU 1 1 Y 1 A LYS 189 73.63 -21.01 0.2288 0.1864 0.1906 1.95 38.07 1779 10031 9.97 93.76 0.16 1 THROUGHOUT 1.91 MOLECULAR REPLACEMENT 22.53 0.90 1.11 3F00 1.95 38.07 128 1146 1 0 1017 0.008 1042 1.134 1407 13.904 388 0.052 152 0.006 181 0.2881 0.2451 2.0057 89 819 61.00 0.2449 0.2386 2.0647 139 1213 92.00 0.2682 0.2253 2.1314 134 1187 92.00 0.2335 0.2160 2.2075 142 1241 94.00 0.2475 0.2025 2.2959 140 1253 95.00 0.2460 0.2032 2.4004 132 1251 95.00 0.2341 0.2050 2.5269 153 1305 98.00 0.2369 0.2223 2.6852 139 1275 98.00 0.3311 0.2225 2.8925 135 1321 99.00 0.2555 0.2114 3.1834 148 1302 99.00 0.2450 0.1635 3.6438 139 1311 99.00 0.1992 0.1445 4.5895 146 1297 99.00 0.1674 0.1603 38.0787 143 1292 98.00 24.19 1.95 38.07 5T0R 10075 0.107 1 13 4.2 96.9 0.373 1.95 2.06 3.2 1 3.5 85.0 refinement PHENIX 1.10_2155 data reduction XDS data scaling XDS phasing PHASER N Synaptotagmin 1 C2A domain, cadmium-bound 1 N N 2 N N 3 N N A PRO 215 A PRO 76 HELX_P A GLY 220 A GLY 81 1 AA1 6 A ASN 248 A ASN 109 HELX_P A VAL 250 A VAL 111 5 AA2 3 metalc 2.423 A ASP 172 A OD2 ASP 33 1_555 A CD 301 B CD CD 1_555 metalc 2.401 A ASP 178 A OD2 ASP 39 1_555 A CD 301 B CD CD 1_555 metalc 2.441 A ASP 230 A OD1 ASP 91 1_555 A CD 301 B CD CD 1_555 metalc 2.607 A ASP 230 A OD2 ASP 91 1_555 A CD 301 B CD CD 1_555 metalc 2.519 A PHE 231 A O PHE 92 1_555 A CD 301 B CD CD 1_555 metalc 2.574 A CD 301 B CD CD 1_555 A HOH 403 C O HOH 1_555 METAL BINDING PROTEIN METAL BINDING PROTEIN A LEU 186 A LEU 47 1 A PRO 187 A PRO 48 7.46 SYT1_MOUSE UNP 1 140 P46096 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL GGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 140 265 5T0R 140 265 P46096 A 1 1 126 4 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 205 A VAL 66 A LYS 213 A LYS 74 A GLN 157 A GLN 18 A ALA 166 A ALA 27 A LYS 144 A LYS 5 A ASP 152 A ASP 13 A THR 256 A THR 117 A ASP 261 A ASP 122 A PHE 193 A PHE 54 A GLU 194 A GLU 55 A PRO 179 A PRO 40 A LEU 186 A LEU 47 A THR 223 A THR 84 A ASP 230 A ASP 91 A ILE 239 A ILE 100 A PRO 246 A PRO 107 binding site for residue CD A 301 A CD 301 Software 5 A ASP 172 A ASP 33 5 1_555 A ASP 178 A ASP 39 5 1_555 A ASP 230 A ASP 91 5 1_555 A PHE 231 A PHE 92 5 1_555 A HOH 403 C HOH 5 1_555 19 P 21 21 21