0.022769
0.013145
0.000000
0.000000
0.026291
0.000000
0.000000
0.000000
0.018038
0.000000
0.000000
0.000000
Biel, J.T.
Thompson, M.C.
Cunningham, C.N.
Corn, J.E.
Fraser, J.S.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
43.920
43.920
55.440
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
S
N
291
N
O
N
292
N
O
N
293
N
O
N
294
N
O
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
R
C
N
300
N
O
N
301
N
C
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
N
Y
321
N
C
Y
322
N
C
Y
323
N
C
Y
324
N
C
Y
325
N
C
N
326
N
O
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
Y
347
N
C
Y
348
N
C
Y
349
N
C
N
350
N
O
N
351
N
O
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
N
N
364
S
C
N
365
N
C
N
366
N
O
N
367
N
C
N
368
N
C
N
369
N
C
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
doub
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
doub
Y
313
N
sing
Y
314
N
sing
N
315
N
sing
Y
316
N
sing
Y
317
N
doub
N
318
N
sing
Y
319
N
doub
N
320
N
sing
Y
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
doub
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
Y
336
N
doub
Y
337
N
sing
Y
338
N
sing
N
339
N
sing
Y
340
N
doub
N
341
N
sing
Y
342
N
doub
N
343
N
sing
Y
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
UK
Structure
STRUE6
2005
1878-4186
25
739
749.e3
10.1016/j.str.2017.03.009
28416112
Flexibility and Design: Conformational Heterogeneity along the Evolutionary Trajectory of a Redesigned Ubiquitin.
2017
10.2210/pdb5tog/pdb
pdb_00005tog
273
1
CCD
2014-12-04
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
0.954
1.0
8.3.1
ALS
0.954
SYNCHROTRON
ALS BEAMLINE 8.3.1
8910.185
Polyubiquitin-B
1
man
polymer
96.063
SULFATE ION
2
syn
non-polymer
18.015
water
83
nat
water
U7Ub25.2540
no
no
GSMQIFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSDYNIQKESTLRGVRRLRGG
GSMQIFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQWLIFAGKRLEDGRTLSDYNIQKESTLRGVRRLRGG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
78
UBB
9606
Homo sapiens
562
Escherichia coli
Biological sequence
1
1.79
31.16
VAPOR DIFFUSION, HANGING DROP
1ul protein solution at 10 mg/ml (20 mM Tris pH 8.0, 150 mM NaCl), 1ul crystallization solution (0.1 M citric acid pH 4.2, 2.2 M ammonium sulfate)
293
pdbx_audit_support
software
pdbx_audit_support
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Author supporting evidence
Refinement description
Author supporting evidence
Data collection
Database references
Refinement description
1
0
2017-05-24
1
1
2017-09-27
1
2
2019-11-27
1
3
2023-10-04
_pdbx_audit_support.funding_organization
_pdbx_audit_support.funding_organization
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
United States
National Institutes of Health/Office of the Director
DP5 OD009180
United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
R21 GM110580
United States
National Science Foundation (NSF, United States)
STC-1231306
United States
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)
F32 HL129989
N
RCSB
Y
RCSB
2016-10-17
REL
REL
1
A
O
HOH
283
c
11.88
SO4
SULFATE ION
HOH
water
1UQB
PDB
experimental model
SO4
1
2
SO4
SO4
101
A
SO4
2
2
SO4
SO4
102
A
HOH
20
3
HOH
HOH
201
A
HOH
104
3
HOH
HOH
202
A
HOH
65
3
HOH
HOH
203
A
HOH
73
3
HOH
HOH
204
A
HOH
57
3
HOH
HOH
205
A
HOH
22
3
HOH
HOH
206
A
HOH
61
3
HOH
HOH
207
A
HOH
36
3
HOH
HOH
208
A
HOH
42
3
HOH
HOH
209
A
HOH
49
3
HOH
HOH
210
A
HOH
83
3
HOH
HOH
211
A
HOH
25
3
HOH
HOH
212
A
HOH
32
3
HOH
HOH
213
A
HOH
67
3
HOH
HOH
214
A
HOH
30
3
HOH
HOH
215
A
HOH
1
3
HOH
HOH
216
A
HOH
24
3
HOH
HOH
217
A
HOH
19
3
HOH
HOH
218
A
HOH
50
3
HOH
HOH
219
A
HOH
66
3
HOH
HOH
220
A
HOH
6
3
HOH
HOH
221
A
HOH
13
3
HOH
HOH
222
A
HOH
2
3
HOH
HOH
223
A
HOH
11
3
HOH
HOH
224
A
HOH
41
3
HOH
HOH
225
A
HOH
26
3
HOH
HOH
226
A
HOH
4
3
HOH
HOH
227
A
HOH
43
3
HOH
HOH
228
A
HOH
38
3
HOH
HOH
229
A
HOH
40
3
HOH
HOH
230
A
HOH
58
3
HOH
HOH
231
A
HOH
54
3
HOH
HOH
232
A
HOH
17
3
HOH
HOH
233
A
HOH
16
3
HOH
HOH
234
A
HOH
21
3
HOH
HOH
235
A
HOH
33
3
HOH
HOH
236
A
HOH
14
3
HOH
HOH
237
A
HOH
92
3
HOH
HOH
238
A
HOH
8
3
HOH
HOH
239
A
HOH
69
3
HOH
HOH
240
A
HOH
82
3
HOH
HOH
241
A
HOH
74
3
HOH
HOH
242
A
HOH
15
3
HOH
HOH
243
A
HOH
31
3
HOH
HOH
244
A
HOH
99
3
HOH
HOH
245
A
HOH
59
3
HOH
HOH
246
A
HOH
93
3
HOH
HOH
247
A
HOH
9
3
HOH
HOH
248
A
HOH
7
3
HOH
HOH
249
A
HOH
12
3
HOH
HOH
250
A
HOH
10
3
HOH
HOH
251
A
HOH
62
3
HOH
HOH
252
A
HOH
80
3
HOH
HOH
253
A
HOH
28
3
HOH
HOH
254
A
HOH
84
3
HOH
HOH
255
A
HOH
18
3
HOH
HOH
256
A
HOH
95
3
HOH
HOH
257
A
HOH
5
3
HOH
HOH
258
A
HOH
29
3
HOH
HOH
259
A
HOH
78
3
HOH
HOH
260
A
HOH
94
3
HOH
HOH
261
A
HOH
37
3
HOH
HOH
262
A
HOH
27
3
HOH
HOH
263
A
HOH
23
3
HOH
HOH
264
A
HOH
70
3
HOH
HOH
265
A
HOH
34
3
HOH
HOH
266
A
HOH
75
3
HOH
HOH
267
A
HOH
44
3
HOH
HOH
268
A
HOH
53
3
HOH
HOH
269
A
HOH
3
3
HOH
HOH
270
A
HOH
64
3
HOH
HOH
271
A
HOH
81
3
HOH
HOH
272
A
HOH
48
3
HOH
HOH
273
A
HOH
97
3
HOH
HOH
274
A
HOH
47
3
HOH
HOH
275
A
HOH
100
3
HOH
HOH
276
A
HOH
52
3
HOH
HOH
277
A
HOH
68
3
HOH
HOH
278
A
HOH
86
3
HOH
HOH
279
A
HOH
39
3
HOH
HOH
280
A
HOH
46
3
HOH
HOH
281
A
HOH
102
3
HOH
HOH
282
A
HOH
103
3
HOH
HOH
283
A
GLY
-1
n
1
GLY
-1
A
SER
0
n
2
SER
0
A
MET
1
n
3
MET
1
A
GLN
2
n
4
GLN
2
A
ILE
3
n
5
ILE
3
A
PHE
4
n
6
PHE
4
A
VAL
5
n
7
VAL
5
A
LYS
6
n
8
LYS
6
A
PHE
7
n
9
PHE
7
A
ARG
8
n
10
ARG
8
A
THR
9
n
11
THR
9
A
GLY
10
n
12
GLY
10
A
LYS
11
n
13
LYS
11
A
THR
12
n
14
THR
12
A
TYR
13
n
15
TYR
13
A
THR
14
n
16
THR
14
A
LEU
15
n
17
LEU
15
A
GLU
16
n
18
GLU
16
A
VAL
17
n
19
VAL
17
A
GLU
18
n
20
GLU
18
A
PRO
19
n
21
PRO
19
A
SER
20
n
22
SER
20
A
ASP
21
n
23
ASP
21
A
THR
22
n
24
THR
22
A
ILE
23
n
25
ILE
23
A
GLU
24
n
26
GLU
24
A
ASN
25
n
27
ASN
25
A
VAL
26
n
28
VAL
26
A
LYS
27
n
29
LYS
27
A
ALA
28
n
30
ALA
28
A
LYS
29
n
31
LYS
29
A
ILE
30
n
32
ILE
30
A
GLN
31
n
33
GLN
31
A
ASP
32
n
34
ASP
32
A
LYS
33
n
35
LYS
33
A
LEU
34
n
36
LEU
34
A
GLY
35
n
37
GLY
35
A
ILE
36
n
38
ILE
36
A
PRO
37
n
39
PRO
37
A
PRO
38
n
40
PRO
38
A
ASP
39
n
41
ASP
39
A
GLN
40
n
42
GLN
40
A
GLN
41
n
43
GLN
41
A
TRP
42
n
44
TRP
42
A
LEU
43
n
45
LEU
43
A
ILE
44
n
46
ILE
44
A
PHE
45
n
47
PHE
45
A
ALA
46
n
48
ALA
46
A
GLY
47
n
49
GLY
47
A
LYS
48
n
50
LYS
48
A
ARG
49
n
51
ARG
49
A
LEU
50
n
52
LEU
50
A
GLU
51
n
53
GLU
51
A
ASP
52
n
54
ASP
52
A
GLY
53
n
55
GLY
53
A
ARG
54
n
56
ARG
54
A
THR
55
n
57
THR
55
A
LEU
56
n
58
LEU
56
A
SER
57
n
59
SER
57
A
ASP
58
n
60
ASP
58
A
TYR
59
n
61
TYR
59
A
ASN
60
n
62
ASN
60
A
ILE
61
n
63
ILE
61
A
GLN
62
n
64
GLN
62
A
LYS
63
n
65
LYS
63
A
GLU
64
n
66
GLU
64
A
SER
65
n
67
SER
65
A
THR
66
n
68
THR
66
A
LEU
67
n
69
LEU
67
A
ARG
68
n
70
ARG
68
A
GLY
69
n
71
GLY
69
A
VAL
70
n
72
VAL
70
A
ARG
71
n
73
ARG
71
A
ARG
72
n
74
ARG
72
A
LEU
73
n
75
LEU
73
A
n
76
74
A
n
77
75
A
n
78
76
A
author_defined_assembly
1
monomeric
software_defined_assembly
PISA
2
dimeric
1720
-55
8350
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
y,x,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
O
VAL
17
A
O
VAL
19
A
N
MET
1
A
N
MET
3
A
N
PHE
4
A
N
PHE
6
A
O
LEU
67
A
O
LEU
69
A
O
ARG
68
A
O
ARG
70
A
N
ILE
44
A
N
ILE
46
A
N
PHE
45
A
N
PHE
47
A
O
LYS
48
A
O
LYS
50
1
A
SO4
102
C
SO4
1
A
ARG
74
A
ARG
76
1
Y
1
A
GLY
75
A
GLY
77
1
Y
1
A
GLY
76
A
GLY
78
1
Y
1
A
A
OE2
O
GLU
HOH
16
201
2.05
A
47.740
11.3588
4.570
0.1211
0.1032
0.1042
1.0800
38.0360
1574
27008
5.8300
99.6500
0.0600
1
FREE R-VALUE
1.370
MOLECULAR REPLACEMENT
9.4300
0.9000
1.1100
1UQB
1.0800
38.0360
101
718
17.13
23.40
10
0
607
75
0.009
1267
1.049
1691
0.081
188
0.008
211
14.008
490
0.1618
0.1207
1.1149
137
2231
2368
11
97.0000
0.1393
0.0902
1.1548
140
2309
2449
11
100.0000
0.1039
0.0786
1.2010
141
2279
2420
11
100.0000
0.1081
0.0771
1.2557
145
2289
2434
11
100.0000
0.1072
0.0756
1.3219
144
2274
2418
11
100.0000
0.1120
0.0744
1.4047
141
2296
2437
11
100.0000
0.1069
0.0763
1.5131
146
2325
2471
11
100.0000
0.1048
0.0809
1.6654
137
2298
2435
11
100.0000
0.1078
0.0899
1.9064
146
2347
2493
11
100.0000
0.1141
0.1037
2.4018
144
2348
2492
11
100.0000
0.1384
0.1331
38.0594
153
2438
2591
11
99.0000
8.960
1.080
38.04
5TOG
27011
-3.000
1.000
0.047
1
28.210
11.5
99.700
0.491
1.080
1.110
4.220
0.909
1
96.800
0.362
1.110
1.140
6.560
0.964
1
99.900
0.293
1.140
1.170
8.220
0.976
1
100.000
0.236
1.170
1.210
10.270
0.985
1
100.000
0.208
1.210
1.250
11.920
0.988
1
100.000
0.179
1.250
1.290
13.990
0.991
1
100.000
0.165
1.290
1.340
15.060
0.993
1
100.000
0.128
1.340
1.390
19.680
0.995
1
100.000
0.109
1.390
1.460
23.070
0.996
1
100.000
0.086
1.460
1.530
28.350
0.998
1
100.000
0.070
1.530
1.610
33.330
0.998
1
100.000
0.060
1.610
1.710
38.840
0.999
1
100.000
0.049
1.710
1.830
46.560
0.999
1
100.000
0.040
1.830
1.970
52.740
0.999
1
100.000
0.036
1.970
2.160
59.960
0.999
1
100.000
0.033
2.160
2.420
64.360
0.999
1
100.000
0.030
2.420
2.790
68.610
1.000
1
99.800
0.027
2.790
3.420
73.960
1.000
1
100.000
0.026
3.420
4.830
74.380
0.999
1
99.200
0.026
4.830
38.04
71.290
0.999
1
95.500
data reduction
XDS
data scaling
XSCALE
refinement
PHENIX
1.11_2556
data extraction
PDB_EXTRACT
3.20
N
Room temperature structure of ubiquitin variant u7ub25.2540
1
N
N
2
N
N
2
N
N
3
N
N
A
THR
22
A
THR
24
HELX_P
A
GLY
35
A
GLY
37
1
AA1
14
A
PRO
37
A
PRO
39
HELX_P
A
ASP
39
A
ASP
41
5
AA2
3
SIGNALING PROTEIN
COMPUTATIONALLY DESIGNED UBIQUITIN, USP7, SIGNALING PROTEIN
UBB_HUMAN
UNP
1
75
P0CG47
GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
75
152
5TOG
-1
76
P0CG47
A
1
1
78
1
GLY
conflict
SER
0
5TOG
A
P0CG47
UNP
76
2
1
THR
conflict
PHE
7
5TOG
A
P0CG47
UNP
83
9
1
LEU
conflict
ARG
8
5TOG
A
P0CG47
UNP
84
10
1
ILE
conflict
TYR
13
5TOG
A
P0CG47
UNP
89
15
1
GLU
conflict
LEU
34
5TOG
A
P0CG47
UNP
110
36
1
ARG
conflict
TRP
42
5TOG
A
P0CG47
UNP
118
44
1
GLN
conflict
ARG
49
5TOG
A
P0CG47
UNP
125
51
1
HIS
conflict
ARG
68
5TOG
A
P0CG47
UNP
144
70
1
LEU
conflict
GLY
69
5TOG
A
P0CG47
UNP
145
71
1
LEU
conflict
ARG
71
5TOG
A
P0CG47
UNP
147
73
5
anti-parallel
parallel
anti-parallel
anti-parallel
A
THR
12
A
THR
14
A
VAL
17
A
VAL
19
A
MET
1
A
MET
3
A
LYS
6
A
LYS
8
A
THR
66
A
THR
68
A
ARG
71
A
ARG
73
A
GLN
41
A
GLN
43
A
PHE
45
A
PHE
47
A
LYS
48
A
LYS
50
A
ARG
49
A
ARG
51
binding site for residue SO4 A 101
A
SO4
101
Software
7
binding site for residue SO4 A 102
A
SO4
102
Software
11
A
GLY
-1
A
GLY
1
7
4_555
A
THR
22
A
THR
24
7
1_555
A
ASN
25
A
ASN
27
7
1_555
A
LYS
63
A
LYS
65
7
2_555
A
HOH
255
D
HOH
7
1_555
A
HOH
260
D
HOH
7
1_555
A
HOH
265
D
HOH
7
2_555
A
THR
14
A
THR
16
11
1_555
A
THR
14
A
THR
16
11
4_555
A
LYS
33
A
LYS
35
11
4_555
A
LYS
33
A
LYS
35
11
1_555
A
GLY
47
A
GLY
49
11
5_444
A
HOH
202
D
HOH
11
1_555
A
HOH
202
D
HOH
11
4_555
A
HOH
227
D
HOH
11
1_555
A
HOH
227
D
HOH
11
4_555
A
HOH
232
D
HOH
11
4_555
A
HOH
232
D
HOH
11
1_555
152
P 31 2 1