0.019365
0.000000
0.001154
-0.000000
0.014315
0.000000
0.000000
-0.000000
0.017136
0.00000
0.00000
0.00000
Nocadello, S.
Light, S.H.
Minasov, G.
Shuvalova, L.
Cardona-Correa, A.A.
Ojeda, I.
Vargas, J.
Johnson, M.E.
Lee, H.
Anderson, W.F.
Center for Structural Genomics of Infectious Diseases (CSGID)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
93.41
90.00
51.639
69.855
58.461
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
K 1
39.098
POTASSIUM ION
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C4 H12 N O3 1
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
TRIS BUFFER
non-polymer
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
K
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
S
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
R
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
N
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
C
N
350
N
C
N
351
N
C
N
352
N
C
N
353
N
N
N
354
N
O
N
355
N
O
N
356
N
O
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
N
N
370
S
C
N
371
N
C
N
372
N
O
N
373
N
C
Y
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
N
380
N
O
N
381
N
O
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
N
398
N
C
N
399
N
C
N
400
N
O
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
doub
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
Y
364
N
doub
Y
365
N
sing
Y
366
N
sing
N
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
doub
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
To be published
0353
Crystal structure of the Zika virus NS3 helicase.
10.2210/pdb5txg/pdb
pdb_00005txg
100
1
C(111)
CCD
2016-08-22
MARMOSAIC 300 mm CCD
Berrylium lenses
SINGLE WAVELENGTH
M
x-ray
1
0.9787
1.0
21-ID-F
APS
0.9787
SYNCHROTRON
APS BEAMLINE 21-ID-F
50545.559
NS3 helicase
UNP residues 1676-2119
1
man
polymer
39.098
POTASSIUM ION
2
syn
non-polymer
122.143
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
1
syn
non-polymer
18.015
water
217
nat
water
no
no
GSEEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAPTRVVAAEMEEALRGLPVRYMTTAV
NVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLYIMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPD
SNSPIMDTEVEVPERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKHQEWDFVVT
TDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYLYGGGCAETDEDHAHWL
EARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTN
NTIMEDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKR
GSEEETPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAPTRVVAAEMEEALRGLPVRYMTTAV
NVTHSGTEIVDLMCHATFTSRLLQPIRVPNYNLYIMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPD
SNSPIMDTEVEVPERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKHQEWDFVVT
TDISEMGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYLYGGGCAETDEDHAHWL
EARMLLDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTN
NTIMEDSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKR
A
CSGID-IDP95729
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ZIKV
Mr 766
sample
1
449
64320
Zika virus (strain Mr 766)
469008
Escherichia coli BL21(DE3)
Rosetta2(DE3)
Biological sequence
1
2.09
41.24
VAPOR DIFFUSION
8.5
Protein: 13.0 mg/ml, 0.5M Sodium chloride, 0.05M Tris-HCl pH=8.5; JCSG+ B12: 0.2 M tri-Potassium citrate, 20 %(w/v) PEG 3350
292
Center for Structural Genomics of Infectious Diseases
CSGID
NIAID, National Institute of Allergy and Infectious Diseases
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Data collection
Database references
Refinement description
1
0
2016-12-14
1
1
2023-10-04
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
Y
RCSB
Y
RCSB
2016-11-16
REL
REL
K
POTASSIUM ION
TRS
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
HOH
water
5JRZ
PDB
experimental model
K
601
2
K
K
701
A
K
602
2
K
K
702
A
TRS
603
3
TRS
TRS
703
A
HOH
706
4
HOH
HOH
801
A
HOH
812
4
HOH
HOH
802
A
HOH
816
4
HOH
HOH
803
A
HOH
748
4
HOH
HOH
804
A
HOH
720
4
HOH
HOH
805
A
HOH
770
4
HOH
HOH
806
A
HOH
727
4
HOH
HOH
807
A
HOH
645
4
HOH
HOH
808
A
HOH
757
4
HOH
HOH
809
A
HOH
718
4
HOH
HOH
810
A
HOH
627
4
HOH
HOH
811
A
HOH
615
4
HOH
HOH
812
A
HOH
670
4
HOH
HOH
813
A
HOH
730
4
HOH
HOH
814
A
HOH
788
4
HOH
HOH
815
A
HOH
717
4
HOH
HOH
816
A
HOH
813
4
HOH
HOH
817
A
HOH
785
4
HOH
HOH
818
A
HOH
771
4
HOH
HOH
819
A
HOH
744
4
HOH
HOH
820
A
HOH
691
4
HOH
HOH
821
A
HOH
686
4
HOH
HOH
822
A
HOH
689
4
HOH
HOH
823
A
HOH
659
4
HOH
HOH
824
A
HOH
639
4
HOH
HOH
825
A
HOH
754
4
HOH
HOH
826
A
HOH
684
4
HOH
HOH
827
A
HOH
728
4
HOH
HOH
828
A
HOH
784
4
HOH
HOH
829
A
HOH
797
4
HOH
HOH
830
A
HOH
777
4
HOH
HOH
831
A
HOH
782
4
HOH
HOH
832
A
HOH
657
4
HOH
HOH
833
A
HOH
643
4
HOH
HOH
834
A
HOH
804
4
HOH
HOH
835
A
HOH
620
4
HOH
HOH
836
A
HOH
722
4
HOH
HOH
837
A
HOH
638
4
HOH
HOH
838
A
HOH
640
4
HOH
HOH
839
A
HOH
737
4
HOH
HOH
840
A
HOH
642
4
HOH
HOH
841
A
HOH
742
4
HOH
HOH
842
A
HOH
614
4
HOH
HOH
843
A
HOH
767
4
HOH
HOH
844
A
HOH
604
4
HOH
HOH
845
A
HOH
622
4
HOH
HOH
846
A
HOH
636
4
HOH
HOH
847
A
HOH
609
4
HOH
HOH
848
A
HOH
735
4
HOH
HOH
849
A
HOH
679
4
HOH
HOH
850
A
HOH
666
4
HOH
HOH
851
A
HOH
687
4
HOH
HOH
852
A
HOH
618
4
HOH
HOH
853
A
HOH
790
4
HOH
HOH
854
A
HOH
632
4
HOH
HOH
855
A
HOH
688
4
HOH
HOH
856
A
HOH
726
4
HOH
HOH
857
A
HOH
801
4
HOH
HOH
858
A
HOH
680
4
HOH
HOH
859
A
HOH
755
4
HOH
HOH
860
A
HOH
808
4
HOH
HOH
861
A
HOH
796
4
HOH
HOH
862
A
HOH
764
4
HOH
HOH
863
A
HOH
695
4
HOH
HOH
864
A
HOH
673
4
HOH
HOH
865
A
HOH
629
4
HOH
HOH
866
A
HOH
655
4
HOH
HOH
867
A
HOH
779
4
HOH
HOH
868
A
HOH
787
4
HOH
HOH
869
A
HOH
794
4
HOH
HOH
870
A
HOH
649
4
HOH
HOH
871
A
HOH
656
4
HOH
HOH
872
A
HOH
806
4
HOH
HOH
873
A
HOH
660
4
HOH
HOH
874
A
HOH
619
4
HOH
HOH
875
A
HOH
696
4
HOH
HOH
876
A
HOH
738
4
HOH
HOH
877
A
HOH
607
4
HOH
HOH
878
A
HOH
634
4
HOH
HOH
879
A
HOH
792
4
HOH
HOH
880
A
HOH
776
4
HOH
HOH
881
A
HOH
807
4
HOH
HOH
882
A
HOH
664
4
HOH
HOH
883
A
HOH
692
4
HOH
HOH
884
A
HOH
765
4
HOH
HOH
885
A
HOH
612
4
HOH
HOH
886
A
HOH
741
4
HOH
HOH
887
A
HOH
714
4
HOH
HOH
888
A
HOH
654
4
HOH
HOH
889
A
HOH
644
4
HOH
HOH
890
A
HOH
756
4
HOH
HOH
891
A
HOH
617
4
HOH
HOH
892
A
HOH
637
4
HOH
HOH
893
A
HOH
721
4
HOH
HOH
894
A
HOH
759
4
HOH
HOH
895
A
HOH
616
4
HOH
HOH
896
A
HOH
625
4
HOH
HOH
897
A
HOH
633
4
HOH
HOH
898
A
HOH
705
4
HOH
HOH
899
A
HOH
605
4
HOH
HOH
900
A
HOH
724
4
HOH
HOH
901
A
HOH
694
4
HOH
HOH
902
A
HOH
772
4
HOH
HOH
903
A
HOH
630
4
HOH
HOH
904
A
HOH
678
4
HOH
HOH
905
A
HOH
672
4
HOH
HOH
906
A
HOH
683
4
HOH
HOH
907
A
HOH
613
4
HOH
HOH
908
A
HOH
663
4
HOH
HOH
909
A
HOH
671
4
HOH
HOH
910
A
HOH
751
4
HOH
HOH
911
A
HOH
747
4
HOH
HOH
912
A
HOH
610
4
HOH
HOH
913
A
HOH
740
4
HOH
HOH
914
A
HOH
685
4
HOH
HOH
915
A
HOH
704
4
HOH
HOH
916
A
HOH
725
4
HOH
HOH
917
A
HOH
719
4
HOH
HOH
918
A
HOH
606
4
HOH
HOH
919
A
HOH
769
4
HOH
HOH
920
A
HOH
707
4
HOH
HOH
921
A
HOH
621
4
HOH
HOH
922
A
HOH
749
4
HOH
HOH
923
A
HOH
652
4
HOH
HOH
924
A
HOH
703
4
HOH
HOH
925
A
HOH
761
4
HOH
HOH
926
A
HOH
650
4
HOH
HOH
927
A
HOH
729
4
HOH
HOH
928
A
HOH
682
4
HOH
HOH
929
A
HOH
698
4
HOH
HOH
930
A
HOH
635
4
HOH
HOH
931
A
HOH
775
4
HOH
HOH
932
A
HOH
628
4
HOH
HOH
933
A
HOH
817
4
HOH
HOH
934
A
HOH
715
4
HOH
HOH
935
A
HOH
766
4
HOH
HOH
936
A
HOH
736
4
HOH
HOH
937
A
HOH
799
4
HOH
HOH
938
A
HOH
733
4
HOH
HOH
939
A
HOH
783
4
HOH
HOH
940
A
HOH
608
4
HOH
HOH
941
A
HOH
693
4
HOH
HOH
942
A
HOH
641
4
HOH
HOH
943
A
HOH
631
4
HOH
HOH
944
A
HOH
810
4
HOH
HOH
945
A
HOH
731
4
HOH
HOH
946
A
HOH
661
4
HOH
HOH
947
A
HOH
746
4
HOH
HOH
948
A
HOH
743
4
HOH
HOH
949
A
HOH
753
4
HOH
HOH
950
A
HOH
662
4
HOH
HOH
951
A
HOH
739
4
HOH
HOH
952
A
HOH
626
4
HOH
HOH
953
A
HOH
711
4
HOH
HOH
954
A
HOH
815
4
HOH
HOH
955
A
HOH
768
4
HOH
HOH
956
A
HOH
750
4
HOH
HOH
957
A
HOH
758
4
HOH
HOH
958
A
HOH
653
4
HOH
HOH
959
A
HOH
780
4
HOH
HOH
960
A
HOH
611
4
HOH
HOH
961
A
HOH
675
4
HOH
HOH
962
A
HOH
713
4
HOH
HOH
963
A
HOH
716
4
HOH
HOH
964
A
HOH
708
4
HOH
HOH
965
A
HOH
676
4
HOH
HOH
966
A
HOH
774
4
HOH
HOH
967
A
HOH
701
4
HOH
HOH
968
A
HOH
658
4
HOH
HOH
969
A
HOH
793
4
HOH
HOH
970
A
HOH
651
4
HOH
HOH
971
A
HOH
623
4
HOH
HOH
972
A
HOH
760
4
HOH
HOH
973
A
HOH
648
4
HOH
HOH
974
A
HOH
710
4
HOH
HOH
975
A
HOH
647
4
HOH
HOH
976
A
HOH
811
4
HOH
HOH
977
A
HOH
798
4
HOH
HOH
978
A
HOH
723
4
HOH
HOH
979
A
HOH
646
4
HOH
HOH
980
A
HOH
762
4
HOH
HOH
981
A
HOH
697
4
HOH
HOH
982
A
HOH
702
4
HOH
HOH
983
A
HOH
814
4
HOH
HOH
984
A
HOH
699
4
HOH
HOH
985
A
HOH
763
4
HOH
HOH
986
A
HOH
700
4
HOH
HOH
987
A
HOH
809
4
HOH
HOH
988
A
HOH
745
4
HOH
HOH
989
A
HOH
734
4
HOH
HOH
990
A
HOH
818
4
HOH
HOH
991
A
HOH
732
4
HOH
HOH
992
A
HOH
803
4
HOH
HOH
993
A
HOH
778
4
HOH
HOH
994
A
HOH
805
4
HOH
HOH
995
A
HOH
789
4
HOH
HOH
996
A
HOH
690
4
HOH
HOH
997
A
HOH
667
4
HOH
HOH
998
A
HOH
681
4
HOH
HOH
999
A
HOH
752
4
HOH
HOH
1000
A
HOH
624
4
HOH
HOH
1001
A
HOH
773
4
HOH
HOH
1002
A
HOH
709
4
HOH
HOH
1003
A
HOH
668
4
HOH
HOH
1004
A
HOH
791
4
HOH
HOH
1005
A
HOH
712
4
HOH
HOH
1006
A
HOH
669
4
HOH
HOH
1007
A
HOH
820
4
HOH
HOH
1008
A
HOH
677
4
HOH
HOH
1009
A
HOH
819
4
HOH
HOH
1010
A
HOH
674
4
HOH
HOH
1011
A
HOH
800
4
HOH
HOH
1012
A
HOH
665
4
HOH
HOH
1013
A
HOH
795
4
HOH
HOH
1014
A
HOH
781
4
HOH
HOH
1015
A
HOH
802
4
HOH
HOH
1016
A
HOH
786
4
HOH
HOH
1017
A
n
1
152
A
n
2
153
A
n
3
154
A
n
4
155
A
n
5
156
A
n
6
157
A
n
7
158
A
VAL
159
n
8
VAL
159
A
GLU
160
n
9
GLU
160
A
CYS
161
n
10
CYS
161
A
PHE
162
n
11
PHE
162
A
GLU
163
n
12
GLU
163
A
PRO
164
n
13
PRO
164
A
SER
165
n
14
SER
165
A
MET
166
n
15
MET
166
A
LEU
167
n
16
LEU
167
A
LYS
168
n
17
LYS
168
A
LYS
169
n
18
LYS
169
A
LYS
170
n
19
LYS
170
A
GLN
171
n
20
GLN
171
A
LEU
172
n
21
LEU
172
A
THR
173
n
22
THR
173
A
VAL
174
n
23
VAL
174
A
LEU
175
n
24
LEU
175
A
ASP
176
n
25
ASP
176
A
LEU
177
n
26
LEU
177
A
HIS
178
n
27
HIS
178
A
PRO
179
n
28
PRO
179
A
GLY
180
n
29
GLY
180
A
ALA
181
n
30
ALA
181
A
GLY
182
n
31
GLY
182
A
LYS
183
n
32
LYS
183
A
THR
184
n
33
THR
184
A
ARG
185
n
34
ARG
185
A
ARG
186
n
35
ARG
186
A
VAL
187
n
36
VAL
187
A
LEU
188
n
37
LEU
188
A
PRO
189
n
38
PRO
189
A
GLU
190
n
39
GLU
190
A
ILE
191
n
40
ILE
191
A
VAL
192
n
41
VAL
192
A
ARG
193
n
42
ARG
193
A
GLU
194
n
43
GLU
194
A
ALA
195
n
44
ALA
195
A
ILE
196
n
45
ILE
196
A
LYS
197
n
46
LYS
197
A
THR
198
n
47
THR
198
A
ARG
199
n
48
ARG
199
A
LEU
200
n
49
LEU
200
A
ARG
201
n
50
ARG
201
A
THR
202
n
51
THR
202
A
VAL
203
n
52
VAL
203
A
ILE
204
n
53
ILE
204
A
LEU
205
n
54
LEU
205
A
ALA
206
n
55
ALA
206
A
PRO
207
n
56
PRO
207
A
THR
208
n
57
THR
208
A
ARG
209
n
58
ARG
209
A
VAL
210
n
59
VAL
210
A
VAL
211
n
60
VAL
211
A
ALA
212
n
61
ALA
212
A
ALA
213
n
62
ALA
213
A
GLU
214
n
63
GLU
214
A
MET
215
n
64
MET
215
A
GLU
216
n
65
GLU
216
A
GLU
217
n
66
GLU
217
A
ALA
218
n
67
ALA
218
A
LEU
219
n
68
LEU
219
A
ARG
220
n
69
ARG
220
A
GLY
221
n
70
GLY
221
A
LEU
222
n
71
LEU
222
A
PRO
223
n
72
PRO
223
A
VAL
224
n
73
VAL
224
A
ARG
225
n
74
ARG
225
A
TYR
226
n
75
TYR
226
A
MET
227
n
76
MET
227
A
THR
228
n
77
THR
228
A
n
78
229
A
n
79
230
A
n
80
231
A
n
81
232
A
n
82
233
A
n
83
234
A
n
84
235
A
n
85
236
A
n
86
237
A
n
87
238
A
GLU
239
n
88
GLU
239
A
ILE
240
n
89
ILE
240
A
VAL
241
n
90
VAL
241
A
ASP
242
n
91
ASP
242
A
LEU
243
n
92
LEU
243
A
MET
244
n
93
MET
244
A
CYS
245
n
94
CYS
245
A
HIS
246
n
95
HIS
246
A
ALA
247
n
96
ALA
247
A
THR
248
n
97
THR
248
A
PHE
249
n
98
PHE
249
A
THR
250
n
99
THR
250
A
SER
251
n
100
SER
251
A
ARG
252
n
101
ARG
252
A
LEU
253
n
102
LEU
253
A
LEU
254
n
103
LEU
254
A
GLN
255
n
104
GLN
255
A
PRO
256
n
105
PRO
256
A
ILE
257
n
106
ILE
257
A
ARG
258
n
107
ARG
258
A
VAL
259
n
108
VAL
259
A
PRO
260
n
109
PRO
260
A
ASN
261
n
110
ASN
261
A
TYR
262
n
111
TYR
262
A
ASN
263
n
112
ASN
263
A
LEU
264
n
113
LEU
264
A
TYR
265
n
114
TYR
265
A
ILE
266
n
115
ILE
266
A
MET
267
n
116
MET
267
A
ASP
268
n
117
ASP
268
A
GLU
269
n
118
GLU
269
A
ALA
270
n
119
ALA
270
A
HIS
271
n
120
HIS
271
A
PHE
272
n
121
PHE
272
A
THR
273
n
122
THR
273
A
ASP
274
n
123
ASP
274
A
PRO
275
n
124
PRO
275
A
SER
276
n
125
SER
276
A
SER
277
n
126
SER
277
A
ILE
278
n
127
ILE
278
A
ALA
279
n
128
ALA
279
A
ALA
280
n
129
ALA
280
A
ARG
281
n
130
ARG
281
A
GLY
282
n
131
GLY
282
A
TYR
283
n
132
TYR
283
A
ILE
284
n
133
ILE
284
A
SER
285
n
134
SER
285
A
THR
286
n
135
THR
286
A
ARG
287
n
136
ARG
287
A
VAL
288
n
137
VAL
288
A
GLU
289
n
138
GLU
289
A
MET
290
n
139
MET
290
A
GLY
291
n
140
GLY
291
A
GLU
292
n
141
GLU
292
A
ALA
293
n
142
ALA
293
A
ALA
294
n
143
ALA
294
A
ALA
295
n
144
ALA
295
A
ILE
296
n
145
ILE
296
A
PHE
297
n
146
PHE
297
A
MET
298
n
147
MET
298
A
THR
299
n
148
THR
299
A
ALA
300
n
149
ALA
300
A
THR
301
n
150
THR
301
A
PRO
302
n
151
PRO
302
A
PRO
303
n
152
PRO
303
A
GLY
304
n
153
GLY
304
A
THR
305
n
154
THR
305
A
ARG
306
n
155
ARG
306
A
ASP
307
n
156
ASP
307
A
ALA
308
n
157
ALA
308
A
PHE
309
n
158
PHE
309
A
PRO
310
n
159
PRO
310
A
ASP
311
n
160
ASP
311
A
SER
312
n
161
SER
312
A
ASN
313
n
162
ASN
313
A
SER
314
n
163
SER
314
A
PRO
315
n
164
PRO
315
A
ILE
316
n
165
ILE
316
A
MET
317
n
166
MET
317
A
ASP
318
n
167
ASP
318
A
THR
319
n
168
THR
319
A
GLU
320
n
169
GLU
320
A
VAL
321
n
170
VAL
321
A
GLU
322
n
171
GLU
322
A
VAL
323
n
172
VAL
323
A
PRO
324
n
173
PRO
324
A
GLU
325
n
174
GLU
325
A
ARG
326
n
175
ARG
326
A
ALA
327
n
176
ALA
327
A
TRP
328
n
177
TRP
328
A
SER
329
n
178
SER
329
A
SER
330
n
179
SER
330
A
GLY
331
n
180
GLY
331
A
PHE
332
n
181
PHE
332
A
ASP
333
n
182
ASP
333
A
TRP
334
n
183
TRP
334
A
VAL
335
n
184
VAL
335
A
THR
336
n
185
THR
336
A
ASP
337
n
186
ASP
337
A
HIS
338
n
187
HIS
338
A
SER
339
n
188
SER
339
A
GLY
340
n
189
GLY
340
A
LYS
341
n
190
LYS
341
A
THR
342
n
191
THR
342
A
VAL
343
n
192
VAL
343
A
TRP
344
n
193
TRP
344
A
PHE
345
n
194
PHE
345
A
VAL
346
n
195
VAL
346
A
PRO
347
n
196
PRO
347
A
SER
348
n
197
SER
348
A
VAL
349
n
198
VAL
349
A
ARG
350
n
199
ARG
350
A
ASN
351
n
200
ASN
351
A
GLY
352
n
201
GLY
352
A
ASN
353
n
202
ASN
353
A
GLU
354
n
203
GLU
354
A
ILE
355
n
204
ILE
355
A
ALA
356
n
205
ALA
356
A
ALA
357
n
206
ALA
357
A
CYS
358
n
207
CYS
358
A
LEU
359
n
208
LEU
359
A
THR
360
n
209
THR
360
A
LYS
361
n
210
LYS
361
A
ALA
362
n
211
ALA
362
A
GLY
363
n
212
GLY
363
A
LYS
364
n
213
LYS
364
A
ARG
365
n
214
ARG
365
A
VAL
366
n
215
VAL
366
A
ILE
367
n
216
ILE
367
A
GLN
368
n
217
GLN
368
A
LEU
369
n
218
LEU
369
A
SER
370
n
219
SER
370
A
ARG
371
n
220
ARG
371
A
LYS
372
n
221
LYS
372
A
THR
373
n
222
THR
373
A
PHE
374
n
223
PHE
374
A
GLU
375
n
224
GLU
375
A
THR
376
n
225
THR
376
A
GLU
377
n
226
GLU
377
A
PHE
378
n
227
PHE
378
A
GLN
379
n
228
GLN
379
A
LYS
380
n
229
LYS
380
A
THR
381
n
230
THR
381
A
LYS
382
n
231
LYS
382
A
HIS
383
n
232
HIS
383
A
GLN
384
n
233
GLN
384
A
GLU
385
n
234
GLU
385
A
TRP
386
n
235
TRP
386
A
ASP
387
n
236
ASP
387
A
PHE
388
n
237
PHE
388
A
VAL
389
n
238
VAL
389
A
VAL
390
n
239
VAL
390
A
THR
391
n
240
THR
391
A
THR
392
n
241
THR
392
A
ASP
393
n
242
ASP
393
A
ILE
394
n
243
ILE
394
A
SER
395
n
244
SER
395
A
GLU
396
n
245
GLU
396
A
MET
397
n
246
MET
397
A
GLY
398
n
247
GLY
398
A
ALA
399
n
248
ALA
399
A
ASN
400
n
249
ASN
400
A
PHE
401
n
250
PHE
401
A
LYS
402
n
251
LYS
402
A
ALA
403
n
252
ALA
403
A
ASP
404
n
253
ASP
404
A
ARG
405
n
254
ARG
405
A
VAL
406
n
255
VAL
406
A
ILE
407
n
256
ILE
407
A
ASP
408
n
257
ASP
408
A
SER
409
n
258
SER
409
A
ARG
410
n
259
ARG
410
A
ARG
411
n
260
ARG
411
A
CYS
412
n
261
CYS
412
A
LEU
413
n
262
LEU
413
A
LYS
414
n
263
LYS
414
A
PRO
415
n
264
PRO
415
A
VAL
416
n
265
VAL
416
A
ILE
417
n
266
ILE
417
A
LEU
418
n
267
LEU
418
A
ASP
419
n
268
ASP
419
A
GLY
420
n
269
GLY
420
A
GLU
421
n
270
GLU
421
A
ARG
422
n
271
ARG
422
A
VAL
423
n
272
VAL
423
A
ILE
424
n
273
ILE
424
A
LEU
425
n
274
LEU
425
A
ALA
426
n
275
ALA
426
A
GLY
427
n
276
GLY
427
A
PRO
428
n
277
PRO
428
A
MET
429
n
278
MET
429
A
PRO
430
n
279
PRO
430
A
VAL
431
n
280
VAL
431
A
THR
432
n
281
THR
432
A
HIS
433
n
282
HIS
433
A
ALA
434
n
283
ALA
434
A
SER
435
n
284
SER
435
A
ALA
436
n
285
ALA
436
A
ALA
437
n
286
ALA
437
A
GLN
438
n
287
GLN
438
A
ARG
439
n
288
ARG
439
A
ARG
440
n
289
ARG
440
A
GLY
441
n
290
GLY
441
A
ARG
442
n
291
ARG
442
A
ILE
443
n
292
ILE
443
A
GLY
444
n
293
GLY
444
A
ARG
445
n
294
ARG
445
A
ASN
446
n
295
ASN
446
A
PRO
447
n
296
PRO
447
A
ASN
448
n
297
ASN
448
A
LYS
449
n
298
LYS
449
A
PRO
450
n
299
PRO
450
A
GLY
451
n
300
GLY
451
A
ASP
452
n
301
ASP
452
A
GLU
453
n
302
GLU
453
A
TYR
454
n
303
TYR
454
A
LEU
455
n
304
LEU
455
A
TYR
456
n
305
TYR
456
A
GLY
457
n
306
GLY
457
A
GLY
458
n
307
GLY
458
A
GLY
459
n
308
GLY
459
A
CYS
460
n
309
CYS
460
A
ALA
461
n
310
ALA
461
A
GLU
462
n
311
GLU
462
A
THR
463
n
312
THR
463
A
ASP
464
n
313
ASP
464
A
GLU
465
n
314
GLU
465
A
ASP
466
n
315
ASP
466
A
HIS
467
n
316
HIS
467
A
ALA
468
n
317
ALA
468
A
HIS
469
n
318
HIS
469
A
TRP
470
n
319
TRP
470
A
LEU
471
n
320
LEU
471
A
GLU
472
n
321
GLU
472
A
ALA
473
n
322
ALA
473
A
ARG
474
n
323
ARG
474
A
MET
475
n
324
MET
475
A
LEU
476
n
325
LEU
476
A
LEU
477
n
326
LEU
477
A
ASP
478
n
327
ASP
478
A
ASN
479
n
328
ASN
479
A
ILE
480
n
329
ILE
480
A
TYR
481
n
330
TYR
481
A
LEU
482
n
331
LEU
482
A
GLN
483
n
332
GLN
483
A
ASP
484
n
333
ASP
484
A
GLY
485
n
334
GLY
485
A
LEU
486
n
335
LEU
486
A
ILE
487
n
336
ILE
487
A
ALA
488
n
337
ALA
488
A
SER
489
n
338
SER
489
A
LEU
490
n
339
LEU
490
A
TYR
491
n
340
TYR
491
A
ARG
492
n
341
ARG
492
A
PRO
493
n
342
PRO
493
A
GLU
494
n
343
GLU
494
A
ALA
495
n
344
ALA
495
A
ASP
496
n
345
ASP
496
A
LYS
497
n
346
LYS
497
A
VAL
498
n
347
VAL
498
A
ALA
499
n
348
ALA
499
A
ALA
500
n
349
ALA
500
A
ILE
501
n
350
ILE
501
A
GLU
502
n
351
GLU
502
A
GLY
503
n
352
GLY
503
A
GLU
504
n
353
GLU
504
A
PHE
505
n
354
PHE
505
A
LYS
506
n
355
LYS
506
A
LEU
507
n
356
LEU
507
A
ARG
508
n
357
ARG
508
A
THR
509
n
358
THR
509
A
GLU
510
n
359
GLU
510
A
GLN
511
n
360
GLN
511
A
ARG
512
n
361
ARG
512
A
LYS
513
n
362
LYS
513
A
THR
514
n
363
THR
514
A
PHE
515
n
364
PHE
515
A
VAL
516
n
365
VAL
516
A
GLU
517
n
366
GLU
517
A
LEU
518
n
367
LEU
518
A
MET
519
n
368
MET
519
A
LYS
520
n
369
LYS
520
A
ARG
521
n
370
ARG
521
A
GLY
522
n
371
GLY
522
A
ASP
523
n
372
ASP
523
A
LEU
524
n
373
LEU
524
A
PRO
525
n
374
PRO
525
A
VAL
526
n
375
VAL
526
A
TRP
527
n
376
TRP
527
A
LEU
528
n
377
LEU
528
A
ALA
529
n
378
ALA
529
A
TYR
530
n
379
TYR
530
A
GLN
531
n
380
GLN
531
A
VAL
532
n
381
VAL
532
A
ALA
533
n
382
ALA
533
A
SER
534
n
383
SER
534
A
ALA
535
n
384
ALA
535
A
GLY
536
n
385
GLY
536
A
ILE
537
n
386
ILE
537
A
THR
538
n
387
THR
538
A
TYR
539
n
388
TYR
539
A
THR
540
n
389
THR
540
A
ASP
541
n
390
ASP
541
A
ARG
542
n
391
ARG
542
A
ARG
543
n
392
ARG
543
A
TRP
544
n
393
TRP
544
A
CYS
545
n
394
CYS
545
A
PHE
546
n
395
PHE
546
A
ASP
547
n
396
ASP
547
A
GLY
548
n
397
GLY
548
A
THR
549
n
398
THR
549
A
THR
550
n
399
THR
550
A
ASN
551
n
400
ASN
551
A
ASN
552
n
401
ASN
552
A
THR
553
n
402
THR
553
A
ILE
554
n
403
ILE
554
A
MET
555
n
404
MET
555
A
GLU
556
n
405
GLU
556
A
ASP
557
n
406
ASP
557
A
SER
558
n
407
SER
558
A
VAL
559
n
408
VAL
559
A
PRO
560
n
409
PRO
560
A
ALA
561
n
410
ALA
561
A
GLU
562
n
411
GLU
562
A
VAL
563
n
412
VAL
563
A
TRP
564
n
413
TRP
564
A
THR
565
n
414
THR
565
A
ARG
566
n
415
ARG
566
A
HIS
567
n
416
HIS
567
A
GLY
568
n
417
GLY
568
A
GLU
569
n
418
GLU
569
A
LYS
570
n
419
LYS
570
A
ARG
571
n
420
ARG
571
A
VAL
572
n
421
VAL
572
A
LEU
573
n
422
LEU
573
A
LYS
574
n
423
LYS
574
A
PRO
575
n
424
PRO
575
A
ARG
576
n
425
ARG
576
A
TRP
577
n
426
TRP
577
A
MET
578
n
427
MET
578
A
ASP
579
n
428
ASP
579
A
ALA
580
n
429
ALA
580
A
ARG
581
n
430
ARG
581
A
VAL
582
n
431
VAL
582
A
CYS
583
n
432
CYS
583
A
SER
584
n
433
SER
584
A
ASP
585
n
434
ASP
585
A
HIS
586
n
435
HIS
586
A
ALA
587
n
436
ALA
587
A
ALA
588
n
437
ALA
588
A
LEU
589
n
438
LEU
589
A
LYS
590
n
439
LYS
590
A
SER
591
n
440
SER
591
A
PHE
592
n
441
PHE
592
A
LYS
593
n
442
LYS
593
A
GLU
594
n
443
GLU
594
A
PHE
595
n
444
PHE
595
A
ALA
596
n
445
ALA
596
A
ALA
597
n
446
ALA
597
A
GLY
598
n
447
GLY
598
A
LYS
599
n
448
LYS
599
A
ARG
600
n
449
ARG
600
A
0.3705
-0.3163
0.2312
0.8232
0.1795
0.8311
0.1127
0.0788
0.0648
-0.1382
-0.1187
-0.0632
-0.0321
0.0713
0.0060
0.0644
0.0170
0.0153
0.0292
0.0114
0.0205
refined
-12.1329
-7.9057
-8.0783
X-RAY DIFFRACTION
A
159
A
820
X-RAY DIFFRACTION
1
author_and_software_defined_assembly
PISA
1
monomeric
A
ARG
252
A
O
ARG
101
1_555
A
K
702
C
K
K
1_555
A
LEU
253
A
O
LEU
102
1_555
73.0
A
ARG
252
A
O
ARG
101
1_555
A
K
702
C
K
K
1_555
A
GLN
255
A
O
GLN
104
1_555
78.6
A
LEU
253
A
O
LEU
102
1_555
A
K
702
C
K
K
1_555
A
GLN
255
A
O
GLN
104
1_555
84.2
A
ARG
252
A
O
ARG
101
1_555
A
K
702
C
K
K
1_555
A
ILE
257
A
O
ILE
106
1_555
84.5
A
LEU
253
A
O
LEU
102
1_555
A
K
702
C
K
K
1_555
A
ILE
257
A
O
ILE
106
1_555
157.4
A
GLN
255
A
O
GLN
104
1_555
A
K
702
C
K
K
1_555
A
ILE
257
A
O
ILE
106
1_555
89.5
A
ARG
252
A
O
ARG
101
1_555
A
K
702
C
K
K
1_555
A
HOH
991
E
O
HOH
1_555
150.2
A
LEU
253
A
O
LEU
102
1_555
A
K
702
C
K
K
1_555
A
HOH
991
E
O
HOH
1_555
78.1
A
GLN
255
A
O
GLN
104
1_555
A
K
702
C
K
K
1_555
A
HOH
991
E
O
HOH
1_555
91.9
A
ILE
257
A
O
ILE
106
1_555
A
K
702
C
K
K
1_555
A
HOH
991
E
O
HOH
1_555
124.0
A
SER
285
A
OG
SER
134
1_555
A
K
701
B
K
K
1_555
A
THR
286
A
OG1
THR
135
1_555
102.7
A
SER
285
A
OG
SER
134
1_555
A
K
701
B
K
K
1_555
A
SER
489
A
O
SER
338
1_555
101.7
A
THR
286
A
OG1
THR
135
1_555
A
K
701
B
K
K
1_555
A
SER
489
A
O
SER
338
1_555
71.7
A
SER
285
A
OG
SER
134
1_555
A
K
701
B
K
K
1_555
A
SER
489
A
OG
SER
338
1_555
171.0
A
THR
286
A
OG1
THR
135
1_555
A
K
701
B
K
K
1_555
A
SER
489
A
OG
SER
338
1_555
76.7
A
SER
489
A
O
SER
338
1_555
A
K
701
B
K
K
1_555
A
SER
489
A
OG
SER
338
1_555
69.5
A
SER
285
A
OG
SER
134
1_555
A
K
701
B
K
K
1_555
A
LEU
490
A
O
LEU
339
1_555
99.0
A
THR
286
A
OG1
THR
135
1_555
A
K
701
B
K
K
1_555
A
LEU
490
A
O
LEU
339
1_555
135.0
A
SER
489
A
O
SER
338
1_555
A
K
701
B
K
K
1_555
A
LEU
490
A
O
LEU
339
1_555
65.5
A
SER
489
A
OG
SER
338
1_555
A
K
701
B
K
K
1_555
A
LEU
490
A
O
LEU
339
1_555
75.9
A
SER
285
A
OG
SER
134
1_555
A
K
701
B
K
K
1_555
A
HOH
963
E
O
HOH
1_555
68.6
A
THR
286
A
OG1
THR
135
1_555
A
K
701
B
K
K
1_555
A
HOH
963
E
O
HOH
1_555
145.8
A
SER
489
A
O
SER
338
1_555
A
K
701
B
K
K
1_555
A
HOH
963
E
O
HOH
1_555
141.6
A
SER
489
A
OG
SER
338
1_555
A
K
701
B
K
K
1_555
A
HOH
963
E
O
HOH
1_555
116.8
A
LEU
490
A
O
LEU
339
1_555
A
K
701
B
K
K
1_555
A
HOH
963
E
O
HOH
1_555
79.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
173
A
N
THR
22
A
O
PHE
297
A
O
PHE
146
A
O
MET
298
A
O
MET
147
A
N
MET
267
A
N
MET
116
A
O
ILE
266
A
O
ILE
115
A
N
LEU
205
A
N
LEU
54
A
N
THR
202
A
N
THR
51
A
O
ASP
242
A
O
ASP
91
A
O
VAL
241
A
O
VAL
90
A
N
ARG
225
A
N
ARG
74
A
N
MET
317
A
N
MET
166
A
O
TYR
454
A
O
TYR
303
A
O
LEU
455
A
O
LEU
304
A
N
VAL
406
A
N
VAL
255
A
O
ARG
405
A
O
ARG
254
A
N
VAL
343
A
N
VAL
192
A
N
TRP
344
A
N
TRP
193
A
O
VAL
389
A
O
VAL
238
A
O
VAL
390
A
O
VAL
239
A
N
LEU
369
A
N
LEU
218
A
N
VAL
416
A
N
VAL
265
A
O
ILE
424
A
O
ILE
273
A
N
GLU
556
A
N
GLU
405
A
O
VAL
559
A
O
VAL
408
A
N
VAL
563
A
N
VAL
412
A
O
ARG
571
A
O
ARG
420
1
A
GLY
152
A
GLY
1
1
Y
1
A
SER
153
A
SER
2
1
Y
1
A
GLU
154
A
GLU
3
1
Y
1
A
GLU
155
A
GLU
4
1
Y
1
A
GLU
156
A
GLU
5
1
Y
1
A
THR
157
A
THR
6
1
Y
1
A
PRO
158
A
PRO
7
1
Y
1
A
THR
229
A
THR
78
1
Y
1
A
ALA
230
A
ALA
79
1
Y
1
A
VAL
231
A
VAL
80
1
Y
1
A
ASN
232
A
ASN
81
1
Y
1
A
VAL
233
A
VAL
82
1
Y
1
A
THR
234
A
THR
83
1
Y
1
A
HIS
235
A
HIS
84
1
Y
1
A
SER
236
A
SER
85
1
Y
1
A
GLY
237
A
GLY
86
1
Y
1
A
THR
238
A
THR
87
1
Y
1
4.15
0.50
120.30
124.45
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
201
201
201
N
1
A
LYS
170
83.72
-3.43
1
A
ALA
270
-69.81
2.45
1
A
SER
329
-106.38
-67.81
1
A
ASP
393
-62.33
0.77
1
A
ALA
399
-160.50
108.87
1
A
LYS
402
-106.20
75.14
1
A
LEU
482
-123.05
-52.65
1
A
ASP
484
-29.23
110.48
1
A
LYS
520
-74.50
-74.29
1
A
LYS
574
-153.44
79.02
1
A
CYS
583
-143.74
26.88
45.902
-0.72
-0.00
0.28
-0.65
0.00
1.32
0.963
0.938
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.24674
0.18421
0.18706
2.05
29.97
1271
24316
5.0
97.93
12.567
0.150
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.241
0.202
0.80
0.80
1.20
5JRZ
2.05
29.97
217
3653
10
0
3426
0.009
0.019
3552
0.002
0.020
3405
1.398
1.953
4815
0.840
3.000
7829
3.072
5.000
440
28.448
22.561
164
11.656
15.000
618
10.969
15.000
38
0.083
0.200
529
0.005
0.021
3983
0.001
0.020
825
1.852
3.585
1746
1.853
3.582
1744
2.928
5.363
2184
2.927
5.363
2185
2.132
3.928
1806
2.131
3.928
1806
3.492
5.765
2630
5.297
42.022
4038
5.251
41.911
4005
0.277
0.262
2.104
97
1739
20
95.63
2.05
30.0
5TXG
25603
-3.0
0.073
0.073
1
17.7
4.5
98.1
0.635
2.05
2.09
2.3
0.724
1
4.4
97.2
refinement
REFMAC
5.8.0155
data reduction
HKL-3000
data scaling
HKL-3000
phasing
PHASER
N
Crystal structure of the Zika virus NS3 helicase.
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
A
GLU
163
A
GLU
12
HELX_P
A
LYS
168
A
LYS
17
5
AA1
6
A
ARG
186
A
ARG
35
HELX_P
A
THR
198
A
THR
47
1
AA2
13
A
THR
208
A
THR
57
HELX_P
A
LEU
219
A
LEU
68
1
AA3
12
A
HIS
246
A
HIS
95
HELX_P
A
GLN
255
A
GLN
104
1
AA4
10
A
ASP
274
A
ASP
123
HELX_P
A
MET
290
A
MET
139
1
AA5
17
A
PHE
332
A
PHE
181
HELX_P
A
ASP
337
A
ASP
186
1
AA6
6
A
SER
348
A
SER
197
HELX_P
A
ALA
362
A
ALA
211
1
AA7
15
A
THR
373
A
THR
222
HELX_P
A
LYS
382
A
LYS
231
1
AA8
10
A
ASP
393
A
ASP
242
HELX_P
A
MET
397
A
MET
246
5
AA9
5
A
THR
432
A
THR
281
HELX_P
A
GLY
441
A
GLY
290
1
AB1
10
A
ALA
468
A
ALA
317
HELX_P
A
ASP
478
A
ASP
327
1
AB2
11
A
TYR
491
A
TYR
340
HELX_P
A
VAL
498
A
VAL
347
5
AB3
8
A
ARG
508
A
ARG
357
HELX_P
A
ARG
521
A
ARG
370
1
AB4
14
A
PRO
525
A
PRO
374
HELX_P
A
ALA
535
A
ALA
384
1
AB5
11
A
ARG
542
A
ARG
391
HELX_P
A
PHE
546
A
PHE
395
5
AB6
5
A
THR
549
A
THR
398
HELX_P
A
THR
553
A
THR
402
5
AB7
5
A
ASP
579
A
ASP
428
HELX_P
A
CYS
583
A
CYS
432
5
AB8
5
A
ASP
585
A
ASP
434
HELX_P
A
ALA
597
A
ALA
446
1
AB9
13
metalc
2.929
A
ARG
252
A
O
ARG
101
1_555
A
K
702
C
K
K
1_555
metalc
2.978
A
LEU
253
A
O
LEU
102
1_555
A
K
702
C
K
K
1_555
metalc
2.672
A
GLN
255
A
O
GLN
104
1_555
A
K
702
C
K
K
1_555
metalc
2.579
A
ILE
257
A
O
ILE
106
1_555
A
K
702
C
K
K
1_555
metalc
2.700
A
SER
285
A
OG
SER
134
1_555
A
K
701
B
K
K
1_555
metalc
3.097
A
THR
286
A
OG1
THR
135
1_555
A
K
701
B
K
K
1_555
metalc
2.819
A
SER
489
A
O
SER
338
1_555
A
K
701
B
K
K
1_555
metalc
2.850
A
SER
489
A
OG
SER
338
1_555
A
K
701
B
K
K
1_555
metalc
3.043
A
LEU
490
A
O
LEU
339
1_555
A
K
701
B
K
K
1_555
metalc
3.449
A
K
701
B
K
K
1_555
A
HOH
963
E
O
HOH
1_555
metalc
2.873
A
K
702
C
K
K
1_555
A
HOH
991
E
O
HOH
1_555
HYDROLASE
Helicase, Hydrolase, Zika Virus, Structural Genomics, Center for Structural Genomics of Infectious Diseases, CSGID
A
GLY
427
A
GLY
276
1
A
PRO
428
A
PRO
277
1.42
A0A0X8GJ44_ZIKV
UNP
1
1676
A0A0X8GJ44
TPVECFEPSMLKKKQLTVLDLHPGAGKTRRVLPEIVREAIKTRLRTVILAPTRVVAAEMEEALRGLPVRYMTTAVNVTHS
GTEIVDLMCHATFTSRLLQPIRVPNYNLYIMDEAHFTDPSSIAARGYISTRVEMGEAAAIFMTATPPGTRDAFPDSNSPI
MDTEVEVPERAWSSGFDWVTDHSGKTVWFVPSVRNGNEIAACLTKAGKRVIQLSRKTFETEFQKTKHQEWDFVVTTDISE
MGANFKADRVIDSRRCLKPVILDGERVILAGPMPVTHASAAQRRGRIGRNPNKPGDEYLYGGGCAETDEDHAHWLEARML
LDNIYLQDGLIASLYRPEADKVAAIEGEFKLRTEQRKTFVELMKRGDLPVWLAYQVASAGITYTDRRWCFDGTTNNTIME
DSVPAEVWTRHGEKRVLKPRWMDARVCSDHAALKSFKEFAAGKR
1676
2119
5TXG
157
600
A0A0X8GJ44
A
1
6
449
1
expression tag
GLY
152
5TXG
A
A0A0X8GJ44
UNP
1
1
expression tag
SER
153
5TXG
A
A0A0X8GJ44
UNP
2
1
expression tag
GLU
154
5TXG
A
A0A0X8GJ44
UNP
3
1
expression tag
GLU
155
5TXG
A
A0A0X8GJ44
UNP
4
1
expression tag
GLU
156
5TXG
A
A0A0X8GJ44
UNP
5
6
6
2
2
2
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
A
LEU
172
A
LEU
21
A
ASP
176
A
ASP
25
A
ALA
294
A
ALA
143
A
THR
299
A
THR
148
A
LEU
264
A
LEU
113
A
ASP
268
A
ASP
117
A
THR
202
A
THR
51
A
ALA
206
A
ALA
55
A
VAL
241
A
VAL
90
A
CYS
245
A
CYS
94
A
VAL
224
A
VAL
73
A
TYR
226
A
TYR
75
A
MET
317
A
MET
166
A
GLU
320
A
GLU
169
A
GLU
453
A
GLU
302
A
TYR
456
A
TYR
305
A
ARG
405
A
ARG
254
A
ASP
408
A
ASP
257
A
THR
342
A
THR
191
A
PHE
345
A
PHE
194
A
PHE
388
A
PHE
237
A
THR
391
A
THR
240
A
VAL
366
A
VAL
215
A
LEU
369
A
LEU
218
A
ARG
411
A
ARG
260
A
LEU
418
A
LEU
267
A
ARG
422
A
ARG
271
A
PRO
430
A
PRO
279
A
MET
555
A
MET
404
A
GLU
556
A
GLU
405
A
VAL
559
A
VAL
408
A
PRO
560
A
PRO
409
A
GLU
562
A
GLU
411
A
TRP
564
A
TRP
413
A
LYS
570
A
LYS
419
A
VAL
572
A
VAL
421
binding site for residue K A 701
A
K
701
Software
5
binding site for residue K A 702
A
K
702
Software
5
binding site for residue TRS A 703
A
TRS
703
Software
7
A
GLY
282
A
GLY
131
5
1_555
A
SER
285
A
SER
134
5
1_555
A
THR
286
A
THR
135
5
1_555
A
SER
489
A
SER
338
5
1_555
A
LEU
490
A
LEU
339
5
1_555
A
ARG
252
A
ARG
101
5
1_555
A
LEU
253
A
LEU
102
5
1_555
A
GLN
255
A
GLN
104
5
1_555
A
ILE
257
A
ILE
106
5
1_555
A
HOH
991
E
HOH
5
1_555
A
GLY
180
A
GLY
29
7
1_555
A
ALA
181
A
ALA
30
7
1_555
A
GLY
182
A
GLY
31
7
1_555
A
THR
184
A
THR
33
7
1_555
A
ARG
185
A
ARG
34
7
1_555
A
ASN
400
A
ASN
249
7
1_555
A
ARG
445
A
ARG
294
7
1_555
4
P 1 21 1