0.020022 0.000000 0.000000 0.000000 0.017761 0.000000 0.000000 0.000000 0.012137 0.00000 0.00000 0.00000 Shuman, S. Goldgur, Y. Remus, B.S. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 49.944 56.304 82.393 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H15 N5 O11 P2 443.201 n GUANOSINE-5'-DIPHOSPHATE RNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N P N 89 N O N 90 N O N 91 N O N 92 N O N 93 N P N 94 N O N 95 N O N 96 N O N 97 N C N 98 R C N 99 N O N 100 S C N 101 N O N 102 R C N 103 N O N 104 R C Y 105 N N Y 106 N C Y 107 N N Y 108 N C N 109 N C N 110 N O N 111 N N N 112 N C N 113 N N N 114 N N Y 115 N C N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N N N 132 S C N 133 N C N 134 N O N 135 N C N 136 N C N 137 N C N 138 N O N 139 N N N 140 N O N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N N N 152 S C N 153 N C N 154 N O N 155 N C N 156 N C N 157 N C N 158 N O N 159 N O N 160 N O N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N N N 171 N C N 172 N C N 173 N O N 174 N O N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C Y 185 N C Y 186 N N Y 187 N C Y 188 N C Y 189 N N N 190 N O N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N O N 202 N H N 203 N H N 204 N N N 205 S C N 206 N C N 207 N O N 208 S C N 209 N C N 210 N C N 211 N C N 212 N O N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 N C N 231 N C N 232 N C N 233 N C N 234 N O N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N N N 249 S C N 250 N C N 251 N O N 252 N C N 253 N C N 254 N C N 255 N C N 256 N N N 257 N O N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N N N 274 S C N 275 N C N 276 N O N 277 N C N 278 N C N 279 N S N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N MG N 294 N N N 295 S C N 296 N C N 297 N O N 298 N C Y 299 N C Y 300 N C Y 301 N C Y 302 N C Y 303 N C Y 304 N C N 305 N O N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N N N 318 S C N 319 N C N 320 N O N 321 N C N 322 N C N 323 N C N 324 N O N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N N N 335 S C N 336 N C N 337 N O N 338 N C N 339 N O N 340 N O N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N N N 349 S C N 350 N C N 351 N O N 352 R C N 353 N O N 354 N C N 355 N O N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N N N 366 S C N 367 N C N 368 N O N 369 N C Y 370 N C Y 371 N C Y 372 N C Y 373 N N Y 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N N N 393 S C N 394 N C N 395 N O N 396 N C Y 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C N 403 N O N 404 N O N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 N C N 421 N C N 422 N C N 423 N O N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N doub N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N doub N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing Y 112 N sing Y 113 N sing Y 114 N doub N 115 N sing Y 116 N sing N 117 N sing Y 118 N doub N 119 N doub N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N doub N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N doub N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N doub N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N doub N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N doub N 181 N sing N 182 N sing N 183 N sing N 184 N sing Y 185 N sing Y 186 N doub Y 187 N doub N 188 N sing Y 189 N sing N 190 N sing Y 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N doub N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N doub N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N doub N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N doub N 289 N sing N 290 N sing N 291 N sing N 292 N sing Y 293 N doub Y 294 N sing Y 295 N sing N 296 N sing Y 297 N doub N 298 N sing Y 299 N doub N 300 N sing Y 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N doub N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N doub N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N doub N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing Y 362 N doub Y 363 N sing Y 364 N sing N 365 N sing Y 366 N doub Y 367 N sing Y 368 N sing N 369 N sing Y 370 N sing Y 371 N doub N 372 N sing Y 373 N doub N 374 N sing Y 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N doub N 386 N sing N 387 N sing N 388 N sing N 389 N sing Y 390 N doub Y 391 N sing Y 392 N sing N 393 N sing Y 394 N doub N 395 N sing Y 396 N doub N 397 N sing Y 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N doub N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing UK Nucleic Acids Res. NARHAD 0389 1362-4962 45 12945 12953 10.1093/nar/gkx1159 29165709 Structural basis for the GTP specificity of the RNA kinase domain of fungal tRNA ligase. 2017 10.2210/pdb5u32/pdb pdb_00005u32 100 1 CCD 2016-07-27 ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 0.97920 1.0 24-ID-E APS 0.97920 SYNCHROTRON APS BEAMLINE 24-ID-E 27283.586 tRNA ligase 6.5.1.3 1 man polymer 443.201 GUANOSINE-5'-DIPHOSPHATE 1 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer 18.015 water 108 nat water no no MANGNEGLSTTTKYIFVPIATIGCGKTTVFNTLNNLFPQWTHIQNDNISKKAKLKICDLTLLALEDDDQSVVLFDRNNSA SRERRQIFTTIDQKRDEHLDDTVDLKYIAINFIPEDLSEEELWDITYNRVIQRGDNHQSIKSQLDENLVESVMKGFIQRY QPINTSRSPDDQFDHVIHLKLSKDENSSKSSLENVRIIIDDLVQNFPDLIKEKPADELINECFQKALDYKPTFVKN MANGNEGLSTTTKYIFVPIATIGCGKTTVFNTLNNLFPQWTHIQNDNISKKAKLKICDLTLLALEDDDQSVVLFDRNNSA SRERRQIFTTIDQKRDEHLDDTVDLKYIAINFIPEDLSEEELWDITYNRVIQRGDNHQSIKSQLDENLVESVMKGFIQRY QPINTSRSPDDQFDHVIHLKLSKDENSSKSSLENVRIIIDDLVQNFPDLIKEKPADELINECFQKALDYKPTFVKN A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Yeast SC5314 / ATCC MYA-2876 sample 1 236 LIG1, RLG1, TRL1, CAALFM_C702060WA, CaJ7.0238, CaO19.13864, CaO19.6511 237561 Candida albicans 866768 Escherichia coli 'BL21-Gold(DE3)pLysS AG' Biological sequence 1 2.12 42.06 VAPOR DIFFUSION, SITTING DROP 0.2M sodium dihydrogen phosphate 20% PEG 3350 294 citation citation citation_author citation pdbx_audit_support chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn pdbx_initial_refinement_model repository Initial release Database references Database references Database references Author supporting evidence Data collection Database references Derived calculations Refinement description 1 0 2017-11-15 1 1 2017-11-22 1 2 2017-12-13 1 3 2017-12-27 1 4 2020-01-01 1 5 2024-03-06 1 6 2024-04-03 _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation_author.name _citation.journal_volume _citation.page_first _citation.page_last _pdbx_audit_support.funding_organization _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr2_auth_seq_id United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM42498 N RCSB Y RCSB 2016-12-01 REL REL 1 A O HOH 907 5.97 1 A O HOH 908 6.88 GDP GUANOSINE-5'-DIPHOSPHATE MG MAGNESIUM ION HOH water Hg derivative Other experimental model GDP 1 2 GDP GDP 701 A MG 1 3 MG MG 702 A HOH 558 4 HOH HOH 801 A HOH 628 4 HOH HOH 802 A HOH 595 4 HOH HOH 803 A HOH 573 4 HOH HOH 804 A HOH 619 4 HOH HOH 805 A HOH 615 4 HOH HOH 806 A HOH 611 4 HOH HOH 807 A HOH 604 4 HOH HOH 808 A HOH 547 4 HOH HOH 809 A HOH 544 4 HOH HOH 810 A HOH 612 4 HOH HOH 811 A HOH 542 4 HOH HOH 812 A HOH 621 4 HOH HOH 813 A HOH 556 4 HOH HOH 814 A HOH 3 4 HOH HOH 815 A HOH 567 4 HOH HOH 816 A HOH 555 4 HOH HOH 817 A HOH 571 4 HOH HOH 818 A HOH 626 4 HOH HOH 819 A HOH 533 4 HOH HOH 820 A HOH 545 4 HOH HOH 821 A HOH 550 4 HOH HOH 822 A HOH 625 4 HOH HOH 823 A HOH 566 4 HOH HOH 824 A HOH 537 4 HOH HOH 825 A HOH 565 4 HOH HOH 826 A HOH 620 4 HOH HOH 827 A HOH 5 4 HOH HOH 828 A HOH 574 4 HOH HOH 829 A HOH 586 4 HOH HOH 830 A HOH 585 4 HOH HOH 831 A HOH 572 4 HOH HOH 832 A HOH 6 4 HOH HOH 833 A HOH 543 4 HOH HOH 834 A HOH 548 4 HOH HOH 835 A HOH 549 4 HOH HOH 836 A HOH 584 4 HOH HOH 837 A HOH 2 4 HOH HOH 838 A HOH 557 4 HOH HOH 839 A HOH 1 4 HOH HOH 840 A HOH 605 4 HOH HOH 841 A HOH 536 4 HOH HOH 842 A HOH 560 4 HOH HOH 843 A HOH 587 4 HOH HOH 844 A HOH 538 4 HOH HOH 845 A HOH 570 4 HOH HOH 846 A HOH 581 4 HOH HOH 847 A HOH 624 4 HOH HOH 848 A HOH 541 4 HOH HOH 849 A HOH 582 4 HOH HOH 850 A HOH 540 4 HOH HOH 851 A HOH 600 4 HOH HOH 852 A HOH 535 4 HOH HOH 853 A HOH 596 4 HOH HOH 854 A HOH 617 4 HOH HOH 855 A HOH 568 4 HOH HOH 856 A HOH 551 4 HOH HOH 857 A HOH 563 4 HOH HOH 858 A HOH 564 4 HOH HOH 859 A HOH 590 4 HOH HOH 860 A HOH 606 4 HOH HOH 861 A HOH 554 4 HOH HOH 862 A HOH 552 4 HOH HOH 863 A HOH 578 4 HOH HOH 864 A HOH 583 4 HOH HOH 865 A HOH 576 4 HOH HOH 866 A HOH 569 4 HOH HOH 867 A HOH 546 4 HOH HOH 868 A HOH 559 4 HOH HOH 869 A HOH 561 4 HOH HOH 870 A HOH 601 4 HOH HOH 871 A HOH 562 4 HOH HOH 872 A HOH 4 4 HOH HOH 873 A HOH 534 4 HOH HOH 874 A HOH 614 4 HOH HOH 875 A HOH 618 4 HOH HOH 876 A HOH 593 4 HOH HOH 877 A HOH 589 4 HOH HOH 878 A HOH 591 4 HOH HOH 879 A HOH 622 4 HOH HOH 880 A HOH 532 4 HOH HOH 881 A HOH 603 4 HOH HOH 882 A HOH 607 4 HOH HOH 883 A HOH 539 4 HOH HOH 884 A HOH 609 4 HOH HOH 885 A HOH 553 4 HOH HOH 886 A HOH 613 4 HOH HOH 887 A HOH 627 4 HOH HOH 888 A HOH 598 4 HOH HOH 889 A HOH 594 4 HOH HOH 890 A HOH 577 4 HOH HOH 891 A HOH 608 4 HOH HOH 892 A HOH 630 4 HOH HOH 893 A HOH 599 4 HOH HOH 894 A HOH 575 4 HOH HOH 895 A HOH 602 4 HOH HOH 896 A HOH 592 4 HOH HOH 897 A HOH 579 4 HOH HOH 898 A HOH 588 4 HOH HOH 899 A HOH 610 4 HOH HOH 900 A HOH 633 4 HOH HOH 901 A HOH 580 4 HOH HOH 902 A HOH 597 4 HOH HOH 903 A HOH 629 4 HOH HOH 904 A HOH 632 4 HOH HOH 905 A HOH 616 4 HOH HOH 906 A HOH 631 4 HOH HOH 907 A HOH 623 4 HOH HOH 908 A n 1 400 A n 2 401 A n 3 402 A n 4 403 A n 5 404 A n 6 405 A n 7 406 A LEU 407 n 8 LEU 407 A SER 408 n 9 SER 408 A THR 409 n 10 THR 409 A THR 410 n 11 THR 410 A THR 411 n 12 THR 411 A LYS 412 n 13 LYS 412 A TYR 413 n 14 TYR 413 A ILE 414 n 15 ILE 414 A PHE 415 n 16 PHE 415 A VAL 416 n 17 VAL 416 A PRO 417 n 18 PRO 417 A ILE 418 n 19 ILE 418 A ALA 419 n 20 ALA 419 A THR 420 n 21 THR 420 A ILE 421 n 22 ILE 421 A GLY 422 n 23 GLY 422 A CYS 423 n 24 CYS 423 A GLY 424 n 25 GLY 424 A LYS 425 n 26 LYS 425 A THR 426 n 27 THR 426 A THR 427 n 28 THR 427 A VAL 428 n 29 VAL 428 A PHE 429 n 30 PHE 429 A ASN 430 n 31 ASN 430 A THR 431 n 32 THR 431 A LEU 432 n 33 LEU 432 A ASN 433 n 34 ASN 433 A ASN 434 n 35 ASN 434 A LEU 435 n 36 LEU 435 A PHE 436 n 37 PHE 436 A PRO 437 n 38 PRO 437 A GLN 438 n 39 GLN 438 A TRP 439 n 40 TRP 439 A THR 440 n 41 THR 440 A HIS 441 n 42 HIS 441 A ILE 442 n 43 ILE 442 A GLN 443 n 44 GLN 443 A ASN 444 n 45 ASN 444 A ASP 445 n 46 ASP 445 A ASN 446 n 47 ASN 446 A ILE 447 n 48 ILE 447 A SER 448 n 49 SER 448 A LYS 449 n 50 LYS 449 A LYS 450 n 51 LYS 450 A ALA 451 n 52 ALA 451 A LYS 452 n 53 LYS 452 A LEU 453 n 54 LEU 453 A LYS 454 n 55 LYS 454 A ILE 455 n 56 ILE 455 A CYS 456 n 57 CYS 456 A ASP 457 n 58 ASP 457 A LEU 458 n 59 LEU 458 A THR 459 n 60 THR 459 A LEU 460 n 61 LEU 460 A LEU 461 n 62 LEU 461 A ALA 462 n 63 ALA 462 A LEU 463 n 64 LEU 463 A GLU 464 n 65 GLU 464 A ASP 465 n 66 ASP 465 A ASP 466 n 67 ASP 466 A ASP 467 n 68 ASP 467 A GLN 468 n 69 GLN 468 A SER 469 n 70 SER 469 A VAL 470 n 71 VAL 470 A VAL 471 n 72 VAL 471 A LEU 472 n 73 LEU 472 A PHE 473 n 74 PHE 473 A ASP 474 n 75 ASP 474 A ARG 475 n 76 ARG 475 A ASN 476 n 77 ASN 476 A ASN 477 n 78 ASN 477 A SER 478 n 79 SER 478 A ALA 479 n 80 ALA 479 A SER 480 n 81 SER 480 A ARG 481 n 82 ARG 481 A GLU 482 n 83 GLU 482 A ARG 483 n 84 ARG 483 A ARG 484 n 85 ARG 484 A GLN 485 n 86 GLN 485 A ILE 486 n 87 ILE 486 A PHE 487 n 88 PHE 487 A THR 488 n 89 THR 488 A THR 489 n 90 THR 489 A ILE 490 n 91 ILE 490 A ASP 491 n 92 ASP 491 A GLN 492 n 93 GLN 492 A LYS 493 n 94 LYS 493 A ARG 494 n 95 ARG 494 A ASP 495 n 96 ASP 495 A GLU 496 n 97 GLU 496 A HIS 497 n 98 HIS 497 A LEU 498 n 99 LEU 498 A ASP 499 n 100 ASP 499 A ASP 500 n 101 ASP 500 A THR 501 n 102 THR 501 A VAL 502 n 103 VAL 502 A ASP 503 n 104 ASP 503 A LEU 504 n 105 LEU 504 A LYS 505 n 106 LYS 505 A TYR 506 n 107 TYR 506 A ILE 507 n 108 ILE 507 A ALA 508 n 109 ALA 508 A ILE 509 n 110 ILE 509 A ASN 510 n 111 ASN 510 A PHE 511 n 112 PHE 511 A ILE 512 n 113 ILE 512 A PRO 513 n 114 PRO 513 A GLU 514 n 115 GLU 514 A ASP 515 n 116 ASP 515 A LEU 516 n 117 LEU 516 A SER 517 n 118 SER 517 A GLU 518 n 119 GLU 518 A GLU 519 n 120 GLU 519 A GLU 520 n 121 GLU 520 A LEU 521 n 122 LEU 521 A TRP 522 n 123 TRP 522 A ASP 523 n 124 ASP 523 A ILE 524 n 125 ILE 524 A THR 525 n 126 THR 525 A TYR 526 n 127 TYR 526 A ASN 527 n 128 ASN 527 A ARG 528 n 129 ARG 528 A VAL 529 n 130 VAL 529 A ILE 530 n 131 ILE 530 A GLN 531 n 132 GLN 531 A n 133 532 A n 134 533 A n 135 534 A n 136 535 A n 137 536 A n 138 537 A n 139 538 A n 140 539 A n 141 540 A n 142 541 A n 143 542 A LEU 543 n 144 LEU 543 A ASP 544 n 145 ASP 544 A GLU 545 n 146 GLU 545 A ASN 546 n 147 ASN 546 A LEU 547 n 148 LEU 547 A VAL 548 n 149 VAL 548 A GLU 549 n 150 GLU 549 A SER 550 n 151 SER 550 A VAL 551 n 152 VAL 551 A MET 552 n 153 MET 552 A LYS 553 n 154 LYS 553 A GLY 554 n 155 GLY 554 A PHE 555 n 156 PHE 555 A ILE 556 n 157 ILE 556 A GLN 557 n 158 GLN 557 A ARG 558 n 159 ARG 558 A TYR 559 n 160 TYR 559 A GLN 560 n 161 GLN 560 A PRO 561 n 162 PRO 561 A ILE 562 n 163 ILE 562 A ASN 563 n 164 ASN 563 A THR 564 n 165 THR 564 A SER 565 n 166 SER 565 A ARG 566 n 167 ARG 566 A SER 567 n 168 SER 567 A PRO 568 n 169 PRO 568 A ASP 569 n 170 ASP 569 A ASP 570 n 171 ASP 570 A GLN 571 n 172 GLN 571 A PHE 572 n 173 PHE 572 A ASP 573 n 174 ASP 573 A HIS 574 n 175 HIS 574 A VAL 575 n 176 VAL 575 A ILE 576 n 177 ILE 576 A HIS 577 n 178 HIS 577 A LEU 578 n 179 LEU 578 A LYS 579 n 180 LYS 579 A LEU 580 n 181 LEU 580 A SER 581 n 182 SER 581 A LYS 582 n 183 LYS 582 A ASP 583 n 184 ASP 583 A GLU 584 n 185 GLU 584 A ASN 585 n 186 ASN 585 A SER 586 n 187 SER 586 A SER 587 n 188 SER 587 A LYS 588 n 189 LYS 588 A SER 589 n 190 SER 589 A SER 590 n 191 SER 590 A LEU 591 n 192 LEU 591 A GLU 592 n 193 GLU 592 A ASN 593 n 194 ASN 593 A VAL 594 n 195 VAL 594 A ARG 595 n 196 ARG 595 A ILE 596 n 197 ILE 596 A ILE 597 n 198 ILE 597 A ILE 598 n 199 ILE 598 A ASP 599 n 200 ASP 599 A ASP 600 n 201 ASP 600 A LEU 601 n 202 LEU 601 A VAL 602 n 203 VAL 602 A GLN 603 n 204 GLN 603 A ASN 604 n 205 ASN 604 A PHE 605 n 206 PHE 605 A PRO 606 n 207 PRO 606 A ASP 607 n 208 ASP 607 A LEU 608 n 209 LEU 608 A ILE 609 n 210 ILE 609 A LYS 610 n 211 LYS 610 A GLU 611 n 212 GLU 611 A LYS 612 n 213 LYS 612 A PRO 613 n 214 PRO 613 A ALA 614 n 215 ALA 614 A ASP 615 n 216 ASP 615 A GLU 616 n 217 GLU 616 A LEU 617 n 218 LEU 617 A ILE 618 n 219 ILE 618 A ASN 619 n 220 ASN 619 A GLU 620 n 221 GLU 620 A CYS 621 n 222 CYS 621 A PHE 622 n 223 PHE 622 A GLN 623 n 224 GLN 623 A LYS 624 n 225 LYS 624 A ALA 625 n 226 ALA 625 A LEU 626 n 227 LEU 626 A ASP 627 n 228 ASP 627 A TYR 628 n 229 TYR 628 A LYS 629 n 230 LYS 629 A PRO 630 n 231 PRO 630 A n 232 631 A n 233 632 A n 234 633 A n 235 634 A n 236 635 A author_and_software_defined_assembly PISA 1 monomeric A THR 426 A OG1 THR 27 1_555 A MG 702 C MG MG 1_555 A GDP 701 B O1B GDP 1_555 80.7 A THR 426 A OG1 THR 27 1_555 A MG 702 C MG MG 1_555 A HOH 823 D O HOH 1_555 81.5 A GDP 701 B O1B GDP 1_555 A MG 702 C MG MG 1_555 A HOH 823 D O HOH 1_555 161.7 A THR 426 A OG1 THR 27 1_555 A MG 702 C MG MG 1_555 A HOH 841 D O HOH 1_555 104.8 A GDP 701 B O1B GDP 1_555 A MG 702 C MG MG 1_555 A HOH 841 D O HOH 1_555 92.9 A HOH 823 D O HOH 1_555 A MG 702 C MG MG 1_555 A HOH 841 D O HOH 1_555 95.7 A THR 426 A OG1 THR 27 1_555 A MG 702 C MG MG 1_555 A HOH 843 D O HOH 1_555 81.8 A GDP 701 B O1B GDP 1_555 A MG 702 C MG MG 1_555 A HOH 843 D O HOH 1_555 90.9 A HOH 823 D O HOH 1_555 A MG 702 C MG MG 1_555 A HOH 843 D O HOH 1_555 82.4 A HOH 841 D O HOH 1_555 A MG 702 C MG MG 1_555 A HOH 843 D O HOH 1_555 172.8 A THR 426 A OG1 THR 27 1_555 A MG 702 C MG MG 1_555 A HOH 848 D O HOH 1_555 169.4 A GDP 701 B O1B GDP 1_555 A MG 702 C MG MG 1_555 A HOH 848 D O HOH 1_555 102.1 A HOH 823 D O HOH 1_555 A MG 702 C MG MG 1_555 A HOH 848 D O HOH 1_555 94.7 A HOH 841 D O HOH 1_555 A MG 702 C MG MG 1_555 A HOH 848 D O HOH 1_555 85.4 A HOH 843 D O HOH 1_555 A MG 702 C MG MG 1_555 A HOH 848 D O HOH 1_555 87.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N THR 440 A N THR 41 A O LEU 472 A O LEU 73 A O VAL 471 A O VAL 72 A N PHE 415 A N PHE 16 A N LYS 412 A N LYS 13 A O ASP 503 A O ASP 104 A N ALA 508 A N ALA 109 A O ILE 576 A O ILE 177 1 A MET 400 A MET 1 1 Y 1 A ALA 401 A ALA 2 1 Y 1 A ASN 402 A ASN 3 1 Y 1 A GLY 403 A GLY 4 1 Y 1 A ASN 404 A ASN 5 1 Y 1 A GLU 405 A GLU 6 1 Y 1 A GLY 406 A GLY 7 1 Y 1 A ARG 532 A ARG 133 1 Y 1 A GLY 533 A GLY 134 1 Y 1 A ASP 534 A ASP 135 1 Y 1 A ASN 535 A ASN 136 1 Y 1 A HIS 536 A HIS 137 1 Y 1 A GLN 537 A GLN 138 1 Y 1 A SER 538 A SER 139 1 Y 1 A ILE 539 A ILE 140 1 Y 1 A LYS 540 A LYS 141 1 Y 1 A SER 541 A SER 142 1 Y 1 A GLN 542 A GLN 143 1 Y 1 A THR 631 A THR 232 1 Y 1 A PHE 632 A PHE 233 1 Y 1 A VAL 633 A VAL 234 1 Y 1 A LYS 634 A LYS 235 1 Y 1 A ASN 635 A ASN 236 1 Y 1 A A O O HOH HOH 901 905 1.92 1 A A O O HOH HOH 819 888 1.92 1 A A NE2 O GLN HOH 571 801 1.93 1 A A OE2 O GLU HOH 496 802 1.97 1 A A OG O SER HOH 587 803 2.04 1 A A O O ASP HOH 583 804 2.13 1 A A OH O TYR HOH 628 805 2.14 1 A A ND2 O ASN HOH 619 806 2.19 1 A SER 408 -136.00 -43.10 1 A THR 409 -154.19 75.75 1 A LYS 450 -107.64 63.38 1 A HIS 574 -175.63 148.03 1 A SER 586 59.66 18.25 0.2456 0.1877 0.1933 2.191 46.487 2083 20855 9.99 90.38 0.28 1 FREE R-VALUE 1.36 SIRAS 25.53 0.90 1.11 Hg derivative ML FLAT BULK SOLVENT MODEL 2.191 46.487 108 1879 29 0 1742 0.007 1801 0.979 2446 5.395 1104 0.051 282 0.005 313 0.3411 0.2580 2.2418 107 951 69.00 0.2957 0.2430 2.2978 102 960 70.00 0.3049 0.2391 2.3600 118 1102 79.00 0.2953 0.2284 2.4294 133 1262 90.00 0.3020 0.2366 2.5078 143 1272 92.00 0.2882 0.2151 2.5974 144 1303 94.00 0.2607 0.2066 2.7014 139 1298 95.00 0.2677 0.2317 2.8244 148 1288 94.00 0.2974 0.2341 2.9732 154 1333 96.00 0.3126 0.2106 3.1595 151 1362 97.00 0.2252 0.1936 3.4034 148 1342 98.00 0.2231 0.1742 3.7457 147 1316 95.00 0.2246 0.1549 4.2874 153 1338 97.00 0.1906 0.1453 5.4004 149 1313 95.00 0.2206 0.1651 46.4970 147 1332 96.00 2.19 50 5U32 20855 -3 0.994 0.097 1 23.9 5.3 90.3 0.689 2.19 2.3 1.8 542 0.641 1 3.6 85.7 refinement PHENIX (1.12_2829) data reduction HKL-2000 data scaling HKL-2000 phasing SHELXCD N Crystal Structure of Fungal RNA Kinase 1 N N 2 N N 3 N N 4 N N A GLY 424 A GLY 25 HELX_P A PHE 436 A PHE 37 1 AA1 13 A ASP 445 A ASP 46 HELX_P A ILE 447 A ILE 48 5 AA2 3 A LYS 454 A LYS 55 HELX_P A ALA 462 A ALA 63 1 AA3 9 A ALA 479 A ALA 80 HELX_P A LEU 498 A LEU 99 1 AA4 20 A SER 517 A SER 118 HELX_P A GLN 531 A GLN 132 1 AA5 15 A ASP 544 A ASP 145 HELX_P A ARG 558 A ARG 159 1 AA6 15 A PRO 568 A PRO 169 HELX_P A PHE 572 A PHE 173 5 AA7 5 A LYS 588 A LYS 189 HELX_P A PHE 605 A PHE 206 1 AA8 18 A ALA 614 A ALA 215 HELX_P A ASP 627 A ASP 228 1 AA9 14 metalc 2.163 A THR 426 A OG1 THR 27 1_555 A MG 702 C MG MG 1_555 metalc 2.270 A GDP 701 B O1B GDP 1_555 A MG 702 C MG MG 1_555 metalc 2.205 A MG 702 C MG MG 1_555 A HOH 823 D O HOH 1_555 metalc 2.026 A MG 702 C MG MG 1_555 A HOH 841 D O HOH 1_555 metalc 2.236 A MG 702 C MG MG 1_555 A HOH 843 D O HOH 1_555 metalc 2.106 A MG 702 C MG MG 1_555 A HOH 848 D O HOH 1_555 TRANSFERASE RNA ligase, RNA repair, polynucleotide kinase, TRANSFERASE A SER 567 A SER 168 1 A PRO 568 A PRO 169 -0.23 5U32 PDB 1 1 5U32 400 635 5U32 400 635 5U32 A 1 1 236 5 parallel parallel parallel parallel A THR 440 A THR 41 A GLN 443 A GLN 44 A VAL 470 A VAL 71 A ASP 474 A ASP 75 A THR 411 A THR 12 A ILE 418 A ILE 19 A ASP 503 A ASP 104 A ASN 510 A ASN 111 A HIS 574 A HIS 175 A HIS 577 A HIS 178 binding site for residue GDP A 701 A GDP 701 Software 18 binding site for residue MG A 702 A MG 702 Software 7 A GLY 422 A GLY 23 18 1_555 A CYS 423 A CYS 24 18 1_555 A GLY 424 A GLY 25 18 1_555 A LYS 425 A LYS 26 18 1_555 A THR 426 A THR 27 18 1_555 A THR 427 A THR 28 18 1_555 A ASP 583 A ASP 184 18 1_555 A LYS 588 A LYS 189 18 1_555 A SER 589 A SER 190 18 1_555 A SER 590 A SER 191 18 1_555 A LEU 626 A LEU 227 18 1_555 A MG 702 C MG 18 1_555 A HOH 837 D HOH 18 1_555 A HOH 841 D HOH 18 1_555 A HOH 848 D HOH 18 1_555 A HOH 852 D HOH 18 1_555 A HOH 854 D HOH 18 1_555 A HOH 860 D HOH 18 1_555 A THR 426 A THR 27 7 1_555 A ASP 445 A ASP 46 7 1_555 A GDP 701 B GDP 7 1_555 A HOH 823 D HOH 7 1_555 A HOH 841 D HOH 7 1_555 A HOH 843 D HOH 7 1_555 A HOH 848 D HOH 7 1_555 19 P 21 21 21