0.015466
0.000000
0.000000
0.000000
0.009754
0.000000
0.000000
0.000000
0.005172
0.00000
0.00000
0.00000
Ofek, G.
Wu, L.
Lougheed, C.S.
Williams, L.D.
Nicely, N.I.
Haynes, B.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
64.658
102.518
193.347
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
Sci Immunol
2470-9468
2
10.1126/sciimmunol.aal2200
28783671
Potent and broad HIV-neutralizing antibodies in memory B cells and plasma.
2017
10.2210/pdb5u3n/pdb
pdb_00005u3n
100
1
CCD
2016-02-27
RAYONIX MX300-HS
SINGLE WAVELENGTH
M
x-ray
1
1.0000
1.0
22-ID
APS
1.0000
SYNCHROTRON
APS BEAMLINE 22-ID
25281.529
DH511.12P Fab Heavy Chain
Fragment of antigen binding
1
man
polymer
23794.516
DH511.12P Fab Light Chain
Fragment of antigen binding
1
man
polymer
3733.408
gp41 MPER peptide
gp41 656-683
1
syn
polymer
18.015
water
247
nat
water
no
no
QVQLVQSGGGLVKPGGSLTPSCVTSGFTFSNTWMSWVRQTPGKGLEWVARISRVGDGPIIDYAAPVKGRFIISRDDSRNT
LFLHMNNLKTEDTAVYYCTADEGAPILRFFEWGYYNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCL
VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
QVQLVQSGGGLVKPGGSLTPSCVTSGFTFSNTWMSWVRQTPGKGLEWVARISRVGDGPIIDYAAPVKGRFIISRDDSRNT
LFLHMNNLKTEDTAVYYCTADEGAPILRFFEWGYYNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCL
VKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
H
polypeptide(L)
no
no
DIRLTQSPSSLSASVGDRITITCRASQSIKDYLNWYKHRPGEAPKLLIYSASKLRSGVSSRFSGSGYGSAFTLTISSLQP
EDFATYYCQESYSSVPMYIFGQGTKVDLKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN
SQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
DIRLTQSPSSLSASVGDRITITCRASQSIKDYLNWYKHRPGEAPKLLIYSASKLRSGVSSRFSGSGYGSAFTLTISSLQP
EDFATYYCQESYSSVPMYIFGQGTKVDLKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN
SQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
L
polypeptide(L)
no
no
KKKELDKWASLWNWFDITNWLWYIRKKK
KKKELDKWASLWNWFDITNWLWYIRKKK
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
235
IgG Heavy Chain
9606
Homo sapiens
293 Embryonic Kidney Cells
9606
Homo sapiens
Biological sequence
sample
1
216
IgG Light Chain
9606
Homo sapiens
293 Embryonic Kidney Cells
9606
Homo sapiens
Biological sequence
1
3.03
59.45
VAPOR DIFFUSION, SITTING DROP
4.5
4% Isopropanol, 3% PEG 3350, 0.75 M NH4SO4, 0.1 M C2H3NaO2 pH 4.5
293
citation_author
citation
citation_author
pdbx_audit_support
software
pdbx_audit_support
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Database references
Author supporting evidence
Database references
Refinement description
Author supporting evidence
Data collection
Database references
Refinement description
1
0
2017-02-15
1
1
2017-07-05
1
2
2017-08-23
1
3
2019-12-11
1
4
2023-10-04
_citation_author.name
_citation.journal_abbrev
_citation.journal_volume
_citation.pdbx_database_id_PubMed
_citation.title
_citation_author.name
_pdbx_audit_support.funding_organization
_pdbx_audit_support.funding_organization
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
United States
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
5UM1AII00645
Crystal Structure of DH511.1 Fab in Complex with HIV-1 gp41 MPER Peptide
Crystal Structure of DH511.2 Fab in Complex with HIV-1 gp41 MPER 662-683 Peptide
Crystal Structure of DH511.2 Fab in Complex with HIV-1 gp41 MPER 670-683 Peptide
Crystal Structure of DH511.11P Fab in Complex with HIV-1 gp41 MPER Peptide
Crystal Structure of DH511.2_K3 Fab in Complex with HIV-1 gp41 MPER Peptide
Crystal Structure of DH511.4 Fab
N
RCSB
Y
RCSB
2016-12-02
REL
REL
HOH
water
gp41 MPER Peptide
11676
Human immunodeficiency virus 1
sample
1
28
5U3L
PDB
experimental model
HOH
416
4
HOH
HOH
301
H
HOH
301
4
HOH
HOH
302
H
HOH
316
4
HOH
HOH
303
H
HOH
308
4
HOH
HOH
304
H
HOH
313
4
HOH
HOH
305
H
HOH
315
4
HOH
HOH
306
H
HOH
306
4
HOH
HOH
307
H
HOH
311
4
HOH
HOH
308
H
HOH
329
4
HOH
HOH
309
H
HOH
323
4
HOH
HOH
310
H
HOH
317
4
HOH
HOH
311
H
HOH
324
4
HOH
HOH
312
H
HOH
318
4
HOH
HOH
313
H
HOH
325
4
HOH
HOH
314
H
HOH
320
4
HOH
HOH
315
H
HOH
310
4
HOH
HOH
316
H
HOH
322
4
HOH
HOH
317
H
HOH
327
4
HOH
HOH
318
H
HOH
401
4
HOH
HOH
319
H
HOH
307
4
HOH
HOH
320
H
HOH
331
4
HOH
HOH
321
H
HOH
321
4
HOH
HOH
322
H
HOH
337
4
HOH
HOH
323
H
HOH
345
4
HOH
HOH
324
H
HOH
332
4
HOH
HOH
325
H
HOH
333
4
HOH
HOH
326
H
HOH
340
4
HOH
HOH
327
H
HOH
347
4
HOH
HOH
328
H
HOH
365
4
HOH
HOH
329
H
HOH
338
4
HOH
HOH
330
H
HOH
309
4
HOH
HOH
331
H
HOH
319
4
HOH
HOH
332
H
HOH
330
4
HOH
HOH
333
H
HOH
352
4
HOH
HOH
334
H
HOH
328
4
HOH
HOH
335
H
HOH
703
4
HOH
HOH
336
H
HOH
351
4
HOH
HOH
337
H
HOH
342
4
HOH
HOH
338
H
HOH
380
4
HOH
HOH
339
H
HOH
344
4
HOH
HOH
340
H
HOH
359
4
HOH
HOH
341
H
HOH
334
4
HOH
HOH
342
H
HOH
356
4
HOH
HOH
343
H
HOH
336
4
HOH
HOH
344
H
HOH
372
4
HOH
HOH
345
H
HOH
361
4
HOH
HOH
346
H
HOH
355
4
HOH
HOH
347
H
HOH
362
4
HOH
HOH
348
H
HOH
350
4
HOH
HOH
349
H
HOH
354
4
HOH
HOH
350
H
HOH
382
4
HOH
HOH
351
H
HOH
357
4
HOH
HOH
352
H
HOH
341
4
HOH
HOH
353
H
HOH
358
4
HOH
HOH
354
H
HOH
360
4
HOH
HOH
355
H
HOH
371
4
HOH
HOH
356
H
HOH
343
4
HOH
HOH
357
H
HOH
349
4
HOH
HOH
358
H
HOH
394
4
HOH
HOH
359
H
HOH
373
4
HOH
HOH
360
H
HOH
376
4
HOH
HOH
361
H
HOH
339
4
HOH
HOH
362
H
HOH
379
4
HOH
HOH
363
H
HOH
364
4
HOH
HOH
364
H
HOH
369
4
HOH
HOH
365
H
HOH
363
4
HOH
HOH
366
H
HOH
385
4
HOH
HOH
367
H
HOH
386
4
HOH
HOH
368
H
HOH
377
4
HOH
HOH
369
H
HOH
389
4
HOH
HOH
370
H
HOH
350
4
HOH
HOH
371
H
HOH
374
4
HOH
HOH
372
H
HOH
375
4
HOH
HOH
373
H
HOH
396
4
HOH
HOH
374
H
HOH
381
4
HOH
HOH
375
H
HOH
399
4
HOH
HOH
376
H
HOH
398
4
HOH
HOH
377
H
HOH
404
4
HOH
HOH
378
H
HOH
366
4
HOH
HOH
379
H
HOH
348
4
HOH
HOH
380
H
HOH
388
4
HOH
HOH
381
H
HOH
392
4
HOH
HOH
382
H
HOH
397
4
HOH
HOH
383
H
HOH
384
4
HOH
HOH
384
H
HOH
390
4
HOH
HOH
385
H
HOH
402
4
HOH
HOH
386
H
HOH
403
4
HOH
HOH
387
H
HOH
395
4
HOH
HOH
388
H
HOH
400
4
HOH
HOH
389
H
HOH
391
4
HOH
HOH
390
H
HOH
387
4
HOH
HOH
391
H
HOH
411
4
HOH
HOH
392
H
HOH
408
4
HOH
HOH
393
H
HOH
393
4
HOH
HOH
394
H
HOH
407
4
HOH
HOH
395
H
HOH
367
4
HOH
HOH
396
H
HOH
412
4
HOH
HOH
397
H
HOH
405
4
HOH
HOH
398
H
HOH
409
4
HOH
HOH
399
H
HOH
413
4
HOH
HOH
400
H
HOH
414
4
HOH
HOH
401
H
HOH
417
4
HOH
HOH
402
H
HOH
410
4
HOH
HOH
403
H
HOH
418
4
HOH
HOH
404
H
HOH
420
4
HOH
HOH
405
H
HOH
429
4
HOH
HOH
406
H
HOH
423
4
HOH
HOH
407
H
HOH
426
4
HOH
HOH
408
H
HOH
427
4
HOH
HOH
409
H
HOH
424
4
HOH
HOH
410
H
HOH
428
4
HOH
HOH
411
H
HOH
430
4
HOH
HOH
412
H
HOH
431
4
HOH
HOH
413
H
HOH
433
4
HOH
HOH
414
H
HOH
438
4
HOH
HOH
415
H
HOH
435
4
HOH
HOH
416
H
HOH
432
4
HOH
HOH
417
H
HOH
436
4
HOH
HOH
418
H
HOH
437
4
HOH
HOH
419
H
HOH
434
4
HOH
HOH
420
H
HOH
421
4
HOH
HOH
421
H
HOH
440
4
HOH
HOH
422
H
HOH
442
4
HOH
HOH
423
H
HOH
444
4
HOH
HOH
424
H
HOH
439
4
HOH
HOH
425
H
HOH
441
4
HOH
HOH
426
H
HOH
443
4
HOH
HOH
427
H
HOH
314
4
HOH
HOH
301
L
HOH
313
4
HOH
HOH
302
L
HOH
305
4
HOH
HOH
303
L
HOH
302
4
HOH
HOH
304
L
HOH
317
4
HOH
HOH
305
L
HOH
306
4
HOH
HOH
306
L
HOH
311
4
HOH
HOH
307
L
HOH
323
4
HOH
HOH
308
L
HOH
316
4
HOH
HOH
309
L
HOH
303
4
HOH
HOH
310
L
HOH
301
4
HOH
HOH
311
L
HOH
304
4
HOH
HOH
312
L
HOH
322
4
HOH
HOH
313
L
HOH
324
4
HOH
HOH
314
L
HOH
320
4
HOH
HOH
315
L
HOH
321
4
HOH
HOH
316
L
HOH
334
4
HOH
HOH
317
L
HOH
327
4
HOH
HOH
318
L
HOH
315
4
HOH
HOH
319
L
HOH
318
4
HOH
HOH
320
L
HOH
310
4
HOH
HOH
321
L
HOH
326
4
HOH
HOH
322
L
HOH
332
4
HOH
HOH
323
L
HOH
331
4
HOH
HOH
324
L
HOH
330
4
HOH
HOH
325
L
HOH
372
4
HOH
HOH
326
L
HOH
336
4
HOH
HOH
327
L
HOH
333
4
HOH
HOH
328
L
HOH
325
4
HOH
HOH
329
L
HOH
307
4
HOH
HOH
330
L
HOH
312
4
HOH
HOH
331
L
HOH
339
4
HOH
HOH
332
L
HOH
340
4
HOH
HOH
333
L
HOH
357
4
HOH
HOH
334
L
HOH
337
4
HOH
HOH
335
L
HOH
349
4
HOH
HOH
336
L
HOH
335
4
HOH
HOH
337
L
HOH
341
4
HOH
HOH
338
L
HOH
328
4
HOH
HOH
339
L
HOH
348
4
HOH
HOH
340
L
HOH
354
4
HOH
HOH
341
L
HOH
329
4
HOH
HOH
342
L
HOH
355
4
HOH
HOH
343
L
HOH
361
4
HOH
HOH
344
L
HOH
359
4
HOH
HOH
345
L
HOH
343
4
HOH
HOH
346
L
HOH
346
4
HOH
HOH
347
L
HOH
338
4
HOH
HOH
348
L
HOH
368
4
HOH
HOH
349
L
HOH
363
4
HOH
HOH
350
L
HOH
353
4
HOH
HOH
351
L
HOH
364
4
HOH
HOH
352
L
HOH
365
4
HOH
HOH
353
L
HOH
356
4
HOH
HOH
354
L
HOH
370
4
HOH
HOH
355
L
HOH
360
4
HOH
HOH
356
L
HOH
358
4
HOH
HOH
357
L
HOH
347
4
HOH
HOH
358
L
HOH
362
4
HOH
HOH
359
L
HOH
376
4
HOH
HOH
360
L
HOH
352
4
HOH
HOH
361
L
HOH
375
4
HOH
HOH
362
L
HOH
319
4
HOH
HOH
363
L
HOH
373
4
HOH
HOH
364
L
HOH
353
4
HOH
HOH
365
L
HOH
369
4
HOH
HOH
366
L
HOH
344
4
HOH
HOH
367
L
HOH
342
4
HOH
HOH
368
L
HOH
374
4
HOH
HOH
369
L
HOH
377
4
HOH
HOH
370
L
HOH
400
4
HOH
HOH
371
L
HOH
367
4
HOH
HOH
372
L
HOH
371
4
HOH
HOH
373
L
HOH
392
4
HOH
HOH
374
L
HOH
380
4
HOH
HOH
375
L
HOH
366
4
HOH
HOH
376
L
HOH
399
4
HOH
HOH
377
L
HOH
386
4
HOH
HOH
378
L
HOH
385
4
HOH
HOH
379
L
HOH
381
4
HOH
HOH
380
L
HOH
384
4
HOH
HOH
381
L
HOH
390
4
HOH
HOH
382
L
HOH
378
4
HOH
HOH
383
L
HOH
394
4
HOH
HOH
384
L
HOH
382
4
HOH
HOH
385
L
HOH
383
4
HOH
HOH
386
L
HOH
346
4
HOH
HOH
387
L
HOH
308
4
HOH
HOH
388
L
HOH
398
4
HOH
HOH
389
L
HOH
388
4
HOH
HOH
390
L
HOH
407
4
HOH
HOH
391
L
HOH
401
4
HOH
HOH
392
L
HOH
389
4
HOH
HOH
393
L
HOH
391
4
HOH
HOH
394
L
HOH
395
4
HOH
HOH
395
L
HOH
396
4
HOH
HOH
396
L
HOH
393
4
HOH
HOH
397
L
HOH
404
4
HOH
HOH
398
L
HOH
405
4
HOH
HOH
399
L
HOH
397
4
HOH
HOH
400
L
HOH
402
4
HOH
HOH
401
L
HOH
406
4
HOH
HOH
402
L
HOH
403
4
HOH
HOH
403
L
HOH
409
4
HOH
HOH
404
L
HOH
411
4
HOH
HOH
405
L
HOH
410
4
HOH
HOH
406
L
HOH
413
4
HOH
HOH
407
L
HOH
416
4
HOH
HOH
408
L
HOH
414
4
HOH
HOH
409
L
HOH
415
4
HOH
HOH
410
L
HOH
418
4
HOH
HOH
411
L
HOH
420
4
HOH
HOH
412
L
HOH
419
4
HOH
HOH
413
L
HOH
309
4
HOH
HOH
414
L
HOH
421
4
HOH
HOH
415
L
HOH
707
4
HOH
HOH
701
A
HOH
704
4
HOH
HOH
702
A
HOH
705
4
HOH
HOH
703
A
HOH
702
4
HOH
HOH
704
A
HOH
706
4
HOH
HOH
705
A
GLN
1
n
1
GLN
1
H
VAL
2
n
2
VAL
2
H
GLN
3
n
3
GLN
3
H
LEU
4
n
4
LEU
4
H
VAL
5
n
5
VAL
5
H
GLN
6
n
6
GLN
6
H
SER
7
n
7
SER
7
H
GLY
8
n
8
GLY
8
H
GLY
9
n
9
GLY
9
H
GLY
10
n
10
GLY
10
H
LEU
11
n
11
LEU
11
H
VAL
12
n
12
VAL
12
H
LYS
13
n
13
LYS
13
H
PRO
14
n
14
PRO
14
H
GLY
15
n
15
GLY
15
H
GLY
16
n
16
GLY
16
H
SER
17
n
17
SER
17
H
LEU
18
n
18
LEU
18
H
THR
19
n
19
THR
19
H
PRO
20
n
20
PRO
20
H
SER
21
n
21
SER
21
H
CYS
22
n
22
CYS
22
H
VAL
23
n
23
VAL
23
H
THR
24
n
24
THR
24
H
SER
25
n
25
SER
25
H
GLY
26
n
26
GLY
26
H
PHE
27
n
27
PHE
27
H
THR
28
n
28
THR
28
H
PHE
29
n
29
PHE
29
H
SER
30
n
30
SER
30
H
ASN
31
n
31
ASN
31
H
THR
32
n
32
THR
32
H
TRP
33
n
33
TRP
33
H
MET
34
n
34
MET
34
H
SER
35
n
35
SER
35
H
TRP
36
n
36
TRP
36
H
VAL
37
n
37
VAL
37
H
ARG
38
n
38
ARG
38
H
GLN
39
n
39
GLN
39
H
THR
40
n
40
THR
40
H
PRO
41
n
41
PRO
41
H
GLY
42
n
42
GLY
42
H
LYS
43
n
43
LYS
43
H
GLY
44
n
44
GLY
44
H
LEU
45
n
45
LEU
45
H
GLU
46
n
46
GLU
46
H
TRP
47
n
47
TRP
47
H
VAL
48
n
48
VAL
48
H
ALA
49
n
49
ALA
49
H
ARG
50
n
50
ARG
50
H
ILE
51
n
51
ILE
51
H
SER
52
n
52
SER
52
H
ARG
52
n
53
A
ARG
52
H
VAL
52
n
54
B
VAL
52
H
GLY
52
n
55
C
GLY
52
H
ASP
53
n
56
ASP
53
H
GLY
54
n
57
GLY
54
H
PRO
55
n
58
PRO
55
H
ILE
56
n
59
ILE
56
H
ILE
57
n
60
ILE
57
H
ASP
58
n
61
ASP
58
H
TYR
59
n
62
TYR
59
H
ALA
60
n
63
ALA
60
H
ALA
61
n
64
ALA
61
H
PRO
62
n
65
PRO
62
H
VAL
63
n
66
VAL
63
H
LYS
64
n
67
LYS
64
H
GLY
65
n
68
GLY
65
H
ARG
66
n
69
ARG
66
H
PHE
67
n
70
PHE
67
H
ILE
68
n
71
ILE
68
H
ILE
69
n
72
ILE
69
H
SER
70
n
73
SER
70
H
ARG
71
n
74
ARG
71
H
ASP
72
n
75
ASP
72
H
ASP
73
n
76
ASP
73
H
SER
74
n
77
SER
74
H
ARG
75
n
78
ARG
75
H
ASN
76
n
79
ASN
76
H
THR
77
n
80
THR
77
H
LEU
78
n
81
LEU
78
H
PHE
79
n
82
PHE
79
H
LEU
80
n
83
LEU
80
H
HIS
81
n
84
HIS
81
H
MET
82
n
85
MET
82
H
ASN
82
n
86
A
ASN
82
H
ASN
82
n
87
B
ASN
82
H
LEU
82
n
88
C
LEU
82
H
LYS
83
n
89
LYS
83
H
THR
84
n
90
THR
84
H
GLU
85
n
91
GLU
85
H
ASP
86
n
92
ASP
86
H
THR
87
n
93
THR
87
H
ALA
88
n
94
ALA
88
H
VAL
89
n
95
VAL
89
H
TYR
90
n
96
TYR
90
H
TYR
91
n
97
TYR
91
H
CYS
92
n
98
CYS
92
H
THR
93
n
99
THR
93
H
ALA
94
n
100
ALA
94
H
ASP
95
n
101
ASP
95
H
GLU
96
n
102
GLU
96
H
GLY
97
n
103
GLY
97
H
ALA
98
n
104
ALA
98
H
PRO
99
n
105
PRO
99
H
ILE
100
n
106
ILE
100
H
LEU
100
n
107
A
LEU
100
H
ARG
100
n
108
B
ARG
100
H
PHE
100
n
109
C
PHE
100
H
PHE
100
n
110
D
PHE
100
H
GLU
100
n
111
E
GLU
100
H
TRP
100
n
112
F
TRP
100
H
GLY
100
n
113
G
GLY
100
H
TYR
100
n
114
H
TYR
100
H
TYR
100
n
115
I
TYR
100
H
ASN
100
n
116
J
ASN
100
H
TYR
100
n
117
K
TYR
100
H
TYR
100
n
118
L
TYR
100
H
MET
100
n
119
M
MET
100
H
ASP
101
n
120
ASP
101
H
VAL
102
n
121
VAL
102
H
TRP
103
n
122
TRP
103
H
GLY
104
n
123
GLY
104
H
LYS
105
n
124
LYS
105
H
GLY
106
n
125
GLY
106
H
THR
107
n
126
THR
107
H
THR
108
n
127
THR
108
H
VAL
109
n
128
VAL
109
H
ILE
110
n
129
ILE
110
H
VAL
111
n
130
VAL
111
H
SER
112
n
131
SER
112
H
SER
113
n
132
SER
113
H
ALA
114
n
133
ALA
114
H
SER
115
n
134
SER
115
H
THR
116
n
135
THR
116
H
LYS
117
n
136
LYS
117
H
GLY
118
n
137
GLY
118
H
PRO
119
n
138
PRO
119
H
SER
120
n
139
SER
120
H
VAL
121
n
140
VAL
121
H
PHE
122
n
141
PHE
122
H
PRO
123
n
142
PRO
123
H
LEU
124
n
143
LEU
124
H
ALA
125
n
144
ALA
125
H
PRO
126
n
145
PRO
126
H
SER
127
n
146
SER
127
H
SER
128
n
147
SER
128
H
LYS
129
n
148
LYS
129
H
SER
130
n
149
SER
130
H
THR
131
n
150
THR
131
H
SER
132
n
151
SER
132
H
GLY
133
n
152
GLY
133
H
GLY
134
n
153
GLY
134
H
THR
135
n
154
THR
135
H
ALA
136
n
155
ALA
136
H
ALA
137
n
156
ALA
137
H
LEU
138
n
157
LEU
138
H
GLY
139
n
158
GLY
139
H
CYS
140
n
159
CYS
140
H
LEU
141
n
160
LEU
141
H
VAL
142
n
161
VAL
142
H
LYS
143
n
162
LYS
143
H
ASP
144
n
163
ASP
144
H
TYR
145
n
164
TYR
145
H
PHE
146
n
165
PHE
146
H
PRO
147
n
166
PRO
147
H
GLU
148
n
167
GLU
148
H
PRO
149
n
168
PRO
149
H
VAL
150
n
169
VAL
150
H
THR
151
n
170
THR
151
H
VAL
152
n
171
VAL
152
H
SER
153
n
172
SER
153
H
TRP
154
n
173
TRP
154
H
ASN
155
n
174
ASN
155
H
SER
156
n
175
SER
156
H
GLY
157
n
176
GLY
157
H
ALA
158
n
177
ALA
158
H
LEU
159
n
178
LEU
159
H
THR
160
n
179
THR
160
H
SER
161
n
180
SER
161
H
GLY
162
n
181
GLY
162
H
VAL
163
n
182
VAL
163
H
HIS
164
n
183
HIS
164
H
THR
165
n
184
THR
165
H
PHE
166
n
185
PHE
166
H
PRO
167
n
186
PRO
167
H
ALA
168
n
187
ALA
168
H
VAL
169
n
188
VAL
169
H
LEU
170
n
189
LEU
170
H
GLN
171
n
190
GLN
171
H
SER
172
n
191
SER
172
H
SER
173
n
192
SER
173
H
GLY
174
n
193
GLY
174
H
LEU
175
n
194
LEU
175
H
TYR
176
n
195
TYR
176
H
SER
177
n
196
SER
177
H
LEU
178
n
197
LEU
178
H
SER
179
n
198
SER
179
H
SER
180
n
199
SER
180
H
VAL
181
n
200
VAL
181
H
VAL
182
n
201
VAL
182
H
THR
183
n
202
THR
183
H
VAL
184
n
203
VAL
184
H
PRO
185
n
204
PRO
185
H
SER
186
n
205
SER
186
H
SER
187
n
206
SER
187
H
SER
188
n
207
SER
188
H
LEU
189
n
208
LEU
189
H
GLY
190
n
209
GLY
190
H
THR
191
n
210
THR
191
H
GLN
192
n
211
GLN
192
H
THR
193
n
212
THR
193
H
TYR
194
n
213
TYR
194
H
ILE
195
n
214
ILE
195
H
CYS
196
n
215
CYS
196
H
ASN
197
n
216
ASN
197
H
VAL
198
n
217
VAL
198
H
ASN
199
n
218
ASN
199
H
HIS
200
n
219
HIS
200
H
LYS
201
n
220
LYS
201
H
PRO
202
n
221
PRO
202
H
SER
203
n
222
SER
203
H
ASN
204
n
223
ASN
204
H
THR
205
n
224
THR
205
H
LYS
206
n
225
LYS
206
H
VAL
207
n
226
VAL
207
H
ASP
208
n
227
ASP
208
H
LYS
209
n
228
LYS
209
H
ARG
210
n
229
ARG
210
H
VAL
211
n
230
VAL
211
H
GLU
212
n
231
GLU
212
H
PRO
213
n
232
PRO
213
H
LYS
214
n
233
LYS
214
H
SER
215
n
234
SER
215
H
n
235
216
H
ASP
1
n
1
ASP
1
L
ILE
2
n
2
ILE
2
L
ARG
3
n
3
ARG
3
L
LEU
4
n
4
LEU
4
L
THR
5
n
5
THR
5
L
GLN
6
n
6
GLN
6
L
SER
7
n
7
SER
7
L
PRO
8
n
8
PRO
8
L
SER
9
n
9
SER
9
L
SER
10
n
10
SER
10
L
LEU
11
n
11
LEU
11
L
SER
12
n
12
SER
12
L
ALA
13
n
13
ALA
13
L
SER
14
n
14
SER
14
L
VAL
15
n
15
VAL
15
L
GLY
16
n
16
GLY
16
L
ASP
17
n
17
ASP
17
L
ARG
18
n
18
ARG
18
L
ILE
19
n
19
ILE
19
L
THR
20
n
20
THR
20
L
ILE
21
n
21
ILE
21
L
THR
22
n
22
THR
22
L
CYS
23
n
23
CYS
23
L
ARG
24
n
24
ARG
24
L
ALA
25
n
25
ALA
25
L
SER
26
n
26
SER
26
L
GLN
27
n
27
GLN
27
L
SER
28
n
28
SER
28
L
ILE
29
n
29
ILE
29
L
LYS
30
n
30
LYS
30
L
ASP
31
n
31
ASP
31
L
TYR
32
n
32
TYR
32
L
LEU
33
n
33
LEU
33
L
ASN
34
n
34
ASN
34
L
TRP
35
n
35
TRP
35
L
TYR
36
n
36
TYR
36
L
LYS
37
n
37
LYS
37
L
HIS
38
n
38
HIS
38
L
ARG
39
n
39
ARG
39
L
PRO
40
n
40
PRO
40
L
GLY
41
n
41
GLY
41
L
GLU
42
n
42
GLU
42
L
ALA
43
n
43
ALA
43
L
PRO
44
n
44
PRO
44
L
LYS
45
n
45
LYS
45
L
LEU
46
n
46
LEU
46
L
LEU
47
n
47
LEU
47
L
ILE
48
n
48
ILE
48
L
TYR
49
n
49
TYR
49
L
SER
50
n
50
SER
50
L
ALA
51
n
51
ALA
51
L
SER
52
n
52
SER
52
L
LYS
53
n
53
LYS
53
L
LEU
54
n
54
LEU
54
L
ARG
55
n
55
ARG
55
L
SER
56
n
56
SER
56
L
GLY
57
n
57
GLY
57
L
VAL
58
n
58
VAL
58
L
SER
59
n
59
SER
59
L
SER
60
n
60
SER
60
L
ARG
61
n
61
ARG
61
L
PHE
62
n
62
PHE
62
L
SER
63
n
63
SER
63
L
GLY
64
n
64
GLY
64
L
SER
65
n
65
SER
65
L
GLY
66
n
66
GLY
66
L
TYR
67
n
67
TYR
67
L
GLY
68
n
68
GLY
68
L
SER
69
n
69
SER
69
L
ALA
70
n
70
ALA
70
L
PHE
71
n
71
PHE
71
L
THR
72
n
72
THR
72
L
LEU
73
n
73
LEU
73
L
THR
74
n
74
THR
74
L
ILE
75
n
75
ILE
75
L
SER
76
n
76
SER
76
L
SER
77
n
77
SER
77
L
LEU
78
n
78
LEU
78
L
GLN
79
n
79
GLN
79
L
PRO
80
n
80
PRO
80
L
GLU
81
n
81
GLU
81
L
ASP
82
n
82
ASP
82
L
PHE
83
n
83
PHE
83
L
ALA
84
n
84
ALA
84
L
THR
85
n
85
THR
85
L
TYR
86
n
86
TYR
86
L
TYR
87
n
87
TYR
87
L
CYS
88
n
88
CYS
88
L
GLN
89
n
89
GLN
89
L
GLU
90
n
90
GLU
90
L
SER
91
n
91
SER
91
L
TYR
92
n
92
TYR
92
L
SER
93
n
93
SER
93
L
SER
94
n
94
SER
94
L
VAL
95
n
95
VAL
95
L
PRO
95
n
96
A
PRO
95
L
MET
95
n
97
B
MET
95
L
TYR
96
n
98
TYR
96
L
ILE
97
n
99
ILE
97
L
PHE
98
n
100
PHE
98
L
GLY
99
n
101
GLY
99
L
GLN
100
n
102
GLN
100
L
GLY
101
n
103
GLY
101
L
THR
102
n
104
THR
102
L
LYS
103
n
105
LYS
103
L
VAL
104
n
106
VAL
104
L
ASP
105
n
107
ASP
105
L
LEU
106
n
108
LEU
106
L
LYS
107
n
109
LYS
107
L
ARG
108
n
110
ARG
108
L
THR
109
n
111
THR
109
L
VAL
110
n
112
VAL
110
L
ALA
111
n
113
ALA
111
L
ALA
112
n
114
ALA
112
L
PRO
113
n
115
PRO
113
L
SER
114
n
116
SER
114
L
VAL
115
n
117
VAL
115
L
PHE
116
n
118
PHE
116
L
ILE
117
n
119
ILE
117
L
PHE
118
n
120
PHE
118
L
PRO
119
n
121
PRO
119
L
PRO
120
n
122
PRO
120
L
SER
121
n
123
SER
121
L
ASP
122
n
124
ASP
122
L
GLU
123
n
125
GLU
123
L
GLN
124
n
126
GLN
124
L
LEU
125
n
127
LEU
125
L
LYS
126
n
128
LYS
126
L
SER
127
n
129
SER
127
L
GLY
128
n
130
GLY
128
L
THR
129
n
131
THR
129
L
ALA
130
n
132
ALA
130
L
SER
131
n
133
SER
131
L
VAL
132
n
134
VAL
132
L
VAL
133
n
135
VAL
133
L
CYS
134
n
136
CYS
134
L
LEU
135
n
137
LEU
135
L
LEU
136
n
138
LEU
136
L
ASN
137
n
139
ASN
137
L
ASN
138
n
140
ASN
138
L
PHE
139
n
141
PHE
139
L
TYR
140
n
142
TYR
140
L
PRO
141
n
143
PRO
141
L
ARG
142
n
144
ARG
142
L
GLU
143
n
145
GLU
143
L
ALA
144
n
146
ALA
144
L
LYS
145
n
147
LYS
145
L
VAL
146
n
148
VAL
146
L
GLN
147
n
149
GLN
147
L
TRP
148
n
150
TRP
148
L
LYS
149
n
151
LYS
149
L
VAL
150
n
152
VAL
150
L
ASP
151
n
153
ASP
151
L
ASN
152
n
154
ASN
152
L
ALA
153
n
155
ALA
153
L
LEU
154
n
156
LEU
154
L
GLN
155
n
157
GLN
155
L
SER
156
n
158
SER
156
L
GLY
157
n
159
GLY
157
L
ASN
158
n
160
ASN
158
L
SER
159
n
161
SER
159
L
GLN
160
n
162
GLN
160
L
GLU
161
n
163
GLU
161
L
SER
162
n
164
SER
162
L
VAL
163
n
165
VAL
163
L
THR
164
n
166
THR
164
L
GLU
165
n
167
GLU
165
L
GLN
166
n
168
GLN
166
L
ASP
167
n
169
ASP
167
L
SER
168
n
170
SER
168
L
LYS
169
n
171
LYS
169
L
ASP
170
n
172
ASP
170
L
SER
171
n
173
SER
171
L
THR
172
n
174
THR
172
L
TYR
173
n
175
TYR
173
L
SER
174
n
176
SER
174
L
LEU
175
n
177
LEU
175
L
SER
176
n
178
SER
176
L
SER
177
n
179
SER
177
L
THR
178
n
180
THR
178
L
LEU
179
n
181
LEU
179
L
THR
180
n
182
THR
180
L
LEU
181
n
183
LEU
181
L
SER
182
n
184
SER
182
L
LYS
183
n
185
LYS
183
L
ALA
184
n
186
ALA
184
L
ASP
185
n
187
ASP
185
L
TYR
186
n
188
TYR
186
L
GLU
187
n
189
GLU
187
L
LYS
188
n
190
LYS
188
L
HIS
189
n
191
HIS
189
L
LYS
190
n
192
LYS
190
L
VAL
191
n
193
VAL
191
L
TYR
192
n
194
TYR
192
L
ALA
193
n
195
ALA
193
L
CYS
194
n
196
CYS
194
L
GLU
195
n
197
GLU
195
L
VAL
196
n
198
VAL
196
L
THR
197
n
199
THR
197
L
HIS
198
n
200
HIS
198
L
GLN
199
n
201
GLN
199
L
GLY
200
n
202
GLY
200
L
LEU
201
n
203
LEU
201
L
SER
202
n
204
SER
202
L
SER
203
n
205
SER
203
L
PRO
204
n
206
PRO
204
L
VAL
205
n
207
VAL
205
L
THR
206
n
208
THR
206
L
LYS
207
n
209
LYS
207
L
SER
208
n
210
SER
208
L
PHE
209
n
211
PHE
209
L
ASN
210
n
212
ASN
210
L
ARG
211
n
213
ARG
211
L
GLY
212
n
214
GLY
212
L
GLU
213
n
215
GLU
213
L
n
216
214
L
n
1
659
A
n
2
660
A
n
3
661
A
GLU
662
n
4
GLU
662
A
LEU
663
n
5
LEU
663
A
ASP
664
n
6
ASP
664
A
LYS
665
n
7
LYS
665
A
TRP
666
n
8
TRP
666
A
ALA
667
n
9
ALA
667
A
SER
668
n
10
SER
668
A
LEU
669
n
11
LEU
669
A
TRP
670
n
12
TRP
670
A
ASN
671
n
13
ASN
671
A
TRP
672
n
14
TRP
672
A
PHE
673
n
15
PHE
673
A
ASP
674
n
16
ASP
674
A
ILE
675
n
17
ILE
675
A
THR
676
n
18
THR
676
A
ASN
677
n
19
ASN
677
A
TRP
678
n
20
TRP
678
A
LEU
679
n
21
LEU
679
A
TRP
680
n
22
TRP
680
A
TYR
681
n
23
TYR
681
A
ILE
682
n
24
ILE
682
A
ARG
683
n
25
ARG
683
A
LYS
684
n
26
LYS
684
A
n
27
685
A
n
28
686
A
1.9257
-0.3244
-4.2666
1.1650
0.4813
9.5012
-0.2397
-0.1164
-0.0700
-0.2502
0.1770
0.0485
0.4412
-0.5055
-0.1674
0.3873
-0.0795
-0.0245
0.4703
0.0421
0.5326
refined
66.0074
107.8965
218.1333
X-RAY DIFFRACTION
5.2403
0.3329
-3.7341
1.7235
-0.0248
5.8220
-0.2550
-0.3276
-0.3302
-0.3818
0.1009
-0.0783
0.1779
0.5292
0.1479
0.2967
0.0150
0.0321
0.3944
0.0464
0.3724
refined
77.5769
109.1540
212.5691
X-RAY DIFFRACTION
4.7652
3.0929
1.5511
4.7519
1.7676
4.1996
-0.4136
-0.4816
-0.5922
-0.3676
0.0246
-0.3369
0.2752
0.8981
0.0888
0.3065
0.0711
0.0751
0.5260
0.1561
0.4712
refined
78.1955
104.0080
217.6164
X-RAY DIFFRACTION
1.8130
-0.0661
-3.3023
6.4312
3.0029
7.3082
-0.3664
-0.5284
0.0671
-0.0404
0.3116
-0.2437
-0.0182
0.8784
0.0294
0.2565
0.0648
0.0169
0.5055
0.0468
0.4292
refined
73.2510
106.4181
222.8984
X-RAY DIFFRACTION
0.2226
-0.3501
0.1076
0.5446
-0.1711
0.0546
-0.0073
-0.5410
0.1395
-0.2372
0.2868
-0.1996
-0.0146
0.8500
-0.2197
0.4145
-0.1463
0.1120
0.7038
-0.1344
0.4822
refined
86.5653
116.9705
205.6610
X-RAY DIFFRACTION
6.5645
-0.1087
-6.6375
1.1413
-0.6942
7.2905
0.2239
-0.3525
0.3055
-0.2173
0.1215
0.0868
-0.1977
0.3666
-0.2308
0.2866
-0.0875
-0.0036
0.3278
-0.0374
0.3262
refined
74.5614
115.3701
212.2181
X-RAY DIFFRACTION
2.9216
-3.0754
-1.5078
3.3931
2.0747
2.3053
-0.2458
-0.0935
-0.2846
0.1358
0.1177
0.2902
0.1916
0.1578
0.1647
0.2827
-0.0109
0.0546
0.3613
0.0208
0.4563
refined
54.0883
117.9466
238.2211
X-RAY DIFFRACTION
6.8733
-3.5932
0.9566
4.8576
0.5046
6.9357
-0.0380
-0.4698
0.5069
0.1323
0.0859
0.1339
-0.9883
-0.1914
-0.0651
0.4124
-0.0226
0.0793
0.3812
-0.0484
0.5045
refined
50.2452
134.9961
236.6928
X-RAY DIFFRACTION
4.8220
-2.6683
0.5036
7.1899
-1.0359
3.4867
-0.1313
0.0749
0.1173
-0.0469
0.0142
0.0181
-0.2433
-0.0740
0.1247
0.3031
-0.0181
0.0294
0.3250
-0.0037
0.3336
refined
50.4441
128.0276
230.3106
X-RAY DIFFRACTION
6.3349
-3.5120
-3.9927
3.6163
4.4446
5.4969
0.4527
0.5171
-0.2054
-0.3312
-0.6720
0.0565
-0.1419
-0.4344
0.3178
0.2678
-0.0201
-0.0324
0.3570
-0.0180
0.4655
refined
42.6492
124.6198
232.2134
X-RAY DIFFRACTION
5.8884
-3.6482
-1.9534
9.0164
3.8895
6.0106
-0.1470
-0.5482
0.1603
0.3340
0.0788
0.1777
-0.1919
0.0024
0.1415
0.2128
0.0103
0.0196
0.4185
-0.0276
0.4791
refined
42.7498
127.4198
238.7291
X-RAY DIFFRACTION
5.6779
-2.3956
0.1525
3.1077
-1.5380
5.5659
0.2938
-0.7020
0.8037
0.4977
0.2516
-0.2893
-1.4267
0.5134
-0.3332
0.8819
-0.2023
0.1764
0.5074
-0.1309
0.5634
refined
76.4912
136.2089
213.3068
X-RAY DIFFRACTION
1.9125
-0.8650
0.0249
4.4882
1.0661
2.8661
0.4284
-0.2079
0.1367
-0.0339
-0.0215
-0.1616
-0.5933
0.5818
-0.1093
0.5318
-0.1788
0.1196
0.3943
-0.0822
0.3264
refined
78.3953
127.7345
209.2365
X-RAY DIFFRACTION
6.0262
0.3156
-1.0945
2.9728
0.4505
0.9100
0.2644
0.6389
0.3762
-0.5635
-0.0202
-0.4292
-0.8571
0.2011
0.4302
0.8102
-0.1419
0.1575
0.4153
0.0209
0.3574
refined
79.4642
128.7020
200.6246
X-RAY DIFFRACTION
5.6462
-1.7491
-1.2544
3.2938
-0.7394
2.6646
0.3615
-0.2214
0.2623
-0.3028
0.0527
-0.2063
-0.9305
0.3732
-0.2572
0.6197
-0.2082
0.1115
0.4123
-0.1027
0.3591
refined
77.6272
128.4478
210.4646
X-RAY DIFFRACTION
2.6589
-0.8220
-2.1643
0.6570
1.2871
2.7101
0.2881
-0.0358
0.4579
-0.6689
0.2383
-0.6330
-0.3481
-0.0531
-0.3254
0.7926
-0.0483
0.1111
0.2762
-0.0044
0.4300
refined
63.3933
142.1374
217.1465
X-RAY DIFFRACTION
4.7728
0.3776
0.4773
8.4466
-4.7495
8.6921
0.2558
-0.3502
0.0026
0.3192
-0.0475
0.3509
0.1704
-0.4858
-0.4001
0.2502
-0.0137
0.0628
0.3245
-0.0562
0.3240
refined
53.2629
132.0312
243.9300
X-RAY DIFFRACTION
0.5356
-0.2632
1.1570
3.6843
-4.1787
8.0116
-0.0559
-0.1817
0.1369
-0.3384
0.1029
-0.0278
0.1361
-0.0778
-0.0201
0.3460
0.0224
0.0738
0.2972
-0.0377
0.4598
refined
62.6015
137.8257
233.2632
X-RAY DIFFRACTION
6.1484
0.1281
7.4187
0.9556
-0.1979
9.0774
0.2044
0.0523
0.0253
-0.0177
0.0720
-0.4319
0.3525
0.6303
-0.1972
0.2935
-0.0025
0.0599
0.3353
0.0092
0.4751
refined
67.5740
133.6239
240.0680
X-RAY DIFFRACTION
4.7401
-5.3982
4.9881
6.3638
-5.6374
5.2577
0.2895
0.3577
0.1993
-1.5315
0.1506
0.7685
0.3100
-0.6469
-0.4663
0.5980
-0.0313
-0.0605
0.4031
0.0587
0.5107
refined
56.3999
136.9583
218.8791
X-RAY DIFFRACTION
1.4297
0.6292
0.8541
3.9601
-1.7907
5.2091
0.1315
-0.2244
0.0236
0.0798
-0.1549
-0.2431
-0.0069
-0.2242
0.0831
0.2191
0.0322
0.0498
0.3500
-0.0340
0.4428
refined
63.1763
137.4764
242.2435
X-RAY DIFFRACTION
7.4032
6.7580
-6.4505
7.4704
-7.9391
9.1761
0.7672
-0.8692
0.4638
1.1003
-0.5299
0.6124
-1.6951
-0.2441
-0.5629
0.4370
0.0994
0.0867
0.5752
-0.0924
0.6042
refined
57.7664
142.3571
246.6530
X-RAY DIFFRACTION
6.0330
2.7860
3.7241
9.8759
5.0256
8.0061
0.2536
0.0139
0.2138
-1.0763
-0.0737
1.0775
-0.3252
-0.3503
-0.2525
0.4221
0.0351
0.0628
0.4410
-0.0055
0.4034
refined
83.0182
96.9425
193.2625
X-RAY DIFFRACTION
5.7580
2.1197
-1.3284
7.2882
-3.8446
2.0364
0.1446
-1.3382
-0.0132
-0.1055
-0.1457
-0.1781
0.4460
1.1712
0.1419
0.3360
0.0605
0.1426
0.7129
-0.0257
0.3571
refined
95.5528
110.0241
199.5822
X-RAY DIFFRACTION
X-RAY DIFFRACTION
1
chain 'H' and (resid 1 through 17 )
X-RAY DIFFRACTION
2
chain 'H' and (resid 18 through 59 )
X-RAY DIFFRACTION
3
chain 'H' and (resid 60 through 75 )
X-RAY DIFFRACTION
4
chain 'H' and (resid 76 through 87 )
X-RAY DIFFRACTION
5
chain 'H' and (resid 88 through 100)
X-RAY DIFFRACTION
6
chain 'H' and (resid 101 through 111 )
X-RAY DIFFRACTION
7
chain 'H' and (resid 112 through 124 )
X-RAY DIFFRACTION
8
chain 'H' and (resid 125 through 145 )
X-RAY DIFFRACTION
9
chain 'H' and (resid 146 through 190 )
X-RAY DIFFRACTION
10
chain 'H' and (resid 191 through 203 )
X-RAY DIFFRACTION
11
chain 'H' and (resid 204 through 215 )
X-RAY DIFFRACTION
12
chain 'L' and (resid 1 through 18 )
X-RAY DIFFRACTION
13
chain 'L' and (resid 19 through 48 )
X-RAY DIFFRACTION
14
chain 'L' and (resid 49 through 69 )
X-RAY DIFFRACTION
15
chain 'L' and (resid 70 through 101 )
X-RAY DIFFRACTION
16
chain 'L' and (resid 102 through 113 )
X-RAY DIFFRACTION
17
chain 'L' and (resid 114 through 128 )
X-RAY DIFFRACTION
18
chain 'L' and (resid 129 through 150 )
X-RAY DIFFRACTION
19
chain 'L' and (resid 151 through 163 )
X-RAY DIFFRACTION
20
chain 'L' and (resid 164 through 174 )
X-RAY DIFFRACTION
21
chain 'L' and (resid 175 through 204 )
X-RAY DIFFRACTION
22
chain 'L' and (resid 205 through 213 )
X-RAY DIFFRACTION
23
chain 'A' and (resid 662 through 671 )
X-RAY DIFFRACTION
24
chain 'A' and (resid 672 through 684 )
author_and_software_defined_assembly
PISA
3
trimeric
5120
-28
22040
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
H
N
VAL
5
A
N
VAL
5
H
O
VAL
23
A
O
VAL
23
H
N
CYS
22
A
N
CYS
22
H
O
LEU
78
A
O
LEU
81
H
O
PHE
79
A
O
PHE
82
H
N
SER
70
A
N
SER
73
H
N
GLY
10
A
N
GLY
10
H
O
ILE
110
A
O
ILE
129
H
O
THR
107
A
O
THR
126
H
N
TYR
90
A
N
TYR
96
H
O
TYR
91
A
O
TYR
97
H
N
VAL
37
A
N
VAL
37
H
N
TRP
36
A
N
TRP
36
H
O
VAL
48
A
O
VAL
48
H
N
ARG
50
A
N
ARG
50
H
O
ASP
58
A
O
ASP
61
H
N
GLY
10
A
N
GLY
10
H
O
ILE
110
A
O
ILE
129
H
O
THR
107
A
O
THR
126
H
N
TYR
90
A
N
TYR
96
H
N
GLU
96
A
N
GLU
102
L
H
O
TYR
100
A
O
TYR
118
H
N
PHE
122
A
N
PHE
141
H
O
LEU
141
A
O
LEU
160
H
N
VAL
142
A
N
VAL
161
H
O
LEU
178
A
O
LEU
197
H
O
VAL
181
A
O
VAL
200
H
N
HIS
164
A
N
HIS
183
H
N
SER
132
A
N
SER
151
H
O
THR
135
A
O
THR
154
H
N
VAL
142
A
N
VAL
161
H
O
LEU
178
A
O
LEU
197
H
O
SER
177
A
O
SER
196
H
N
VAL
169
A
N
VAL
188
H
N
SER
153
A
N
SER
172
H
O
ASN
197
A
O
ASN
216
H
N
VAL
198
A
N
VAL
217
H
O
VAL
207
A
O
VAL
226
L
N
THR
5
B
N
THR
5
L
O
ARG
24
B
O
ARG
24
L
N
ILE
19
B
N
ILE
19
L
O
ILE
75
B
O
ILE
75
L
O
THR
74
B
O
THR
74
L
N
SER
63
B
N
SER
63
L
N
ALA
13
B
N
ALA
13
L
O
ASP
105
B
O
ASP
107
L
O
THR
102
B
O
THR
104
L
N
TYR
86
B
N
TYR
86
L
O
TYR
87
B
O
TYR
87
L
N
TYR
36
B
N
TYR
36
L
N
TRP
35
B
N
TRP
35
L
O
LEU
47
B
O
LEU
47
L
N
TYR
49
B
N
TYR
49
L
O
LYS
53
B
O
LYS
53
L
N
PHE
116
B
N
PHE
118
L
O
LEU
135
B
O
LEU
137
L
N
VAL
132
B
N
VAL
134
L
O
LEU
179
B
O
LEU
181
L
O
SER
176
B
O
SER
178
L
N
SER
162
B
N
SER
164
L
O
ALA
153
B
O
ALA
155
L
N
VAL
150
B
N
VAL
152
L
N
GLN
147
B
N
GLN
149
L
O
GLU
195
B
O
GLU
197
L
N
VAL
196
B
N
VAL
198
L
O
VAL
205
B
O
VAL
207
1
L
HOH
390
E
HOH
1
H
CG
LYS
43
A
CG
LYS
43
1
Y
1
H
CD
LYS
43
A
CD
LYS
43
1
Y
1
H
CE
LYS
43
A
CE
LYS
43
1
Y
1
H
NZ
LYS
43
A
NZ
LYS
43
1
Y
1
H
CG
GLU
85
A
CG
GLU
91
1
Y
1
H
CD
GLU
85
A
CD
GLU
91
1
Y
1
H
OE1
GLU
85
A
OE1
GLU
91
1
Y
1
H
OE2
GLU
85
A
OE2
GLU
91
1
Y
1
H
CG
LYS
129
A
CG
LYS
148
1
Y
1
H
CD
LYS
129
A
CD
LYS
148
1
Y
1
H
CE
LYS
129
A
CE
LYS
148
1
Y
1
H
NZ
LYS
129
A
NZ
LYS
148
1
Y
1
L
CG
ARG
3
B
CG
ARG
3
1
Y
1
L
CD
ARG
3
B
CD
ARG
3
1
Y
1
L
NE
ARG
3
B
NE
ARG
3
1
Y
1
L
CZ
ARG
3
B
CZ
ARG
3
1
Y
1
L
NH1
ARG
3
B
NH1
ARG
3
1
Y
1
L
NH2
ARG
3
B
NH2
ARG
3
1
Y
1
L
CG1
VAL
15
B
CG1
VAL
15
1
Y
1
L
CG2
VAL
15
B
CG2
VAL
15
1
Y
1
L
CG
ARG
24
B
CG
ARG
24
1
Y
1
L
CD
ARG
24
B
CD
ARG
24
1
Y
1
L
NE
ARG
24
B
NE
ARG
24
1
Y
1
L
CZ
ARG
24
B
CZ
ARG
24
1
Y
1
L
NH1
ARG
24
B
NH1
ARG
24
1
Y
1
L
NH2
ARG
24
B
NH2
ARG
24
1
Y
1
L
OG
SER
94
B
OG
SER
94
1
Y
1
L
CG1
VAL
95
B
CG1
VAL
95
1
Y
1
L
CG2
VAL
95
B
CG2
VAL
95
1
Y
1
A
CG
GLU
662
C
CG
GLU
4
1
Y
1
A
CD
GLU
662
C
CD
GLU
4
1
Y
1
A
OE1
GLU
662
C
OE1
GLU
4
1
Y
1
A
OE2
GLU
662
C
OE2
GLU
4
1
Y
1
A
CG
LYS
684
C
CG
LYS
26
1
Y
1
A
CD
LYS
684
C
CD
LYS
26
1
Y
1
A
CE
LYS
684
C
CE
LYS
26
1
Y
1
A
NZ
LYS
684
C
NZ
LYS
26
1
Y
1
H
CYS
216
A
CYS
235
1
Y
1
L
CYS
214
B
CYS
216
1
Y
1
A
LYS
659
C
LYS
1
1
Y
1
A
LYS
660
C
LYS
2
1
Y
1
A
LYS
661
C
LYS
3
1
Y
1
A
LYS
685
C
LYS
27
1
Y
1
A
LYS
686
C
LYS
28
1
Y
1
L
L
SG
HG
CYS
CYS
134
194
1.12
1
H
H
HZ1
O
LYS
HOH
64
302
1.58
1
L
L
O
O
HOH
HOH
353
407
1.98
1
H
H
O
O
SER
HOH
7
301
2.02
1
A
A
N
O
GLU
HOH
662
701
2.14
1
H
SER
132
-110.60
68.37
1
L
LYS
30
52.46
-114.87
1
L
ALA
51
74.51
-39.23
1
L
SER
52
-144.59
-0.67
B
1
L
MET
95
-131.69
-32.43
0.2283
0.1817
0.1835
2.000
35.167
1678
43739
3.84
99.74
0.24
1
FREE R-VALUE
1.35
MOLECULAR REPLACEMENT
24.03
0.90
1.11
5U3L
ML
FLAT BULK SOLVENT MODEL
2.000
35.167
247
3870
0
0
3623
0.004
3775
0.667
5157
10.743
2227
0.050
575
0.004
653
0.3232
0.2502
2.0588
135
3371
97.00
0.2788
0.2326
2.1252
138
3457
100.00
0.2676
0.2153
2.2012
138
3454
100.00
0.2404
0.2098
2.2893
139
3494
100.00
0.2187
0.2041
2.3935
140
3488
100.00
0.2543
0.2078
2.5196
137
3476
100.00
0.2857
0.2152
2.6774
140
3497
100.00
0.2638
0.2082
2.8841
140
3493
100.00
0.2278
0.1972
3.1741
141
3531
100.00
0.2119
0.1755
3.6330
140
3518
100.00
0.1849
0.1421
4.5757
142
3587
100.00
0.2298
0.1704
35.1724
148
3695
100.00
38.180
2.000
35.167
5U3N
43739
0.080
0.030
0.085
0.924
1
8.700
344034
7.900
99.900
0.649
2.000
2.060
4216
0.797
1
6.400
99.000
0.556
2.060
2.130
0.861
1
7.300
99.800
0.438
2.130
2.200
0.918
1
8.000
99.900
0.371
2.200
2.290
0.948
1
8.200
100.000
0.296
2.290
2.390
0.959
1
8.300
100.000
0.232
2.390
2.520
0.976
1
8.300
100.000
0.184
2.520
2.680
0.984
1
8.300
100.000
0.138
2.680
2.880
0.989
1
8.200
100.000
0.102
2.880
3.170
0.994
1
8.200
100.000
0.076
3.170
3.630
0.996
1
8.000
100.000
0.059
3.630
4.580
0.997
1
7.800
100.000
0.047
4.580
50.0
0.998
1
7.600
99.500
refinement
PHENIX
1.11.1_2575
data collection
HKL-2000
data scaling
HKL-2000
data extraction
PDB_EXTRACT
3.22
data reduction
HKL-2000
phasing
PHASER
N
Crystal Structure of DH511.12P Fab in Complex with HIV-1 gp41 MPER Peptide
1
N
N
2
N
N
3
N
N
4
N
N
4
N
N
4
N
N
H
THR
28
A
THR
28
HELX_P
H
THR
32
A
THR
32
5
AA1
5
H
ARG
52
A
ARG
53
HELX_P
H
GLY
54
A
GLY
57
5
AA2
5
A
H
ALA
61
A
ALA
64
HELX_P
H
LYS
64
A
LYS
67
5
AA3
4
H
ASP
73
A
ASP
76
HELX_P
H
ARG
75
A
ARG
78
5
AA4
3
H
LYS
83
A
LYS
89
HELX_P
H
THR
87
A
THR
93
5
AA5
5
H
ARG
100
A
ARG
108
HELX_P
H
TRP
100
A
TRP
112
5
AA6
5
B
F
H
SER
156
A
SER
175
HELX_P
H
ALA
158
A
ALA
177
5
AA7
3
H
SER
187
A
SER
206
HELX_P
H
THR
191
A
THR
210
5
AA8
5
H
LYS
201
A
LYS
220
HELX_P
H
ASN
204
A
ASN
223
5
AA9
4
L
GLN
79
B
GLN
79
HELX_P
L
PHE
83
B
PHE
83
5
AB1
5
L
SER
121
B
SER
123
HELX_P
L
LYS
126
B
LYS
128
1
AB2
6
L
LYS
183
B
LYS
185
HELX_P
L
LYS
188
B
LYS
190
1
AB3
6
A
ASN
671
C
ASN
13
HELX_P
A
LYS
684
C
LYS
26
1
AB4
14
disulf
2.060
H
CYS
22
A
SG
CYS
22
1_555
H
CYS
92
A
SG
CYS
98
1_555
disulf
2.038
H
CYS
140
A
SG
CYS
159
1_555
H
CYS
196
A
SG
CYS
215
1_555
disulf
2.061
L
CYS
23
B
SG
CYS
23
1_555
L
CYS
88
B
SG
CYS
88
1_555
disulf
2.066
L
CYS
134
B
SG
CYS
136
1_555
L
CYS
194
B
SG
CYS
196
1_555
IMMUNE SYSTEM/VIRAL PROTEIN
HIV-1, Neutralizing, Antibody, gp41, MPER, IMMUNE SYSTEM-VIRAL PROTEIN complex
H
GLY
54
A
GLY
57
1
H
PRO
55
A
PRO
58
3.76
H
PHE
146
A
PHE
165
1
H
PRO
147
A
PRO
166
-8.04
H
GLU
148
A
GLU
167
1
H
PRO
149
A
PRO
168
-1.09
L
SER
7
B
SER
7
1
L
PRO
8
B
PRO
8
-2.97
L
TYR
140
B
TYR
142
1
L
PRO
141
B
PRO
143
2.93
5U3N
PDB
1
1
5U3N
5U3N
PDB
2
1
5U3N
5U3N
PDB
3
1
5U3N
1
216
5U3N
1
216
5U3N
H
1
1
235
1
214
5U3N
1
214
5U3N
L
2
1
216
659
686
5U3N
659
686
5U3N
A
3
1
28
4
6
4
4
4
3
4
6
4
4
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
H
GLN
3
A
GLN
3
H
GLN
6
A
GLN
6
H
SER
21
A
SER
21
H
SER
25
A
SER
25
H
THR
77
A
THR
80
H
MET
82
A
MET
85
H
PHE
67
A
PHE
70
H
ASP
72
A
ASP
75
H
GLY
10
A
GLY
10
H
VAL
12
A
VAL
12
H
THR
107
A
THR
126
H
VAL
111
A
VAL
130
H
ALA
88
A
ALA
94
H
PRO
99
A
PRO
105
H
TRP
33
A
TRP
33
H
GLN
39
A
GLN
39
H
LEU
45
A
LEU
45
H
ILE
51
A
ILE
51
H
ILE
57
A
ILE
60
H
TYR
59
A
TYR
62
H
GLY
10
A
GLY
10
H
VAL
12
A
VAL
12
H
THR
107
A
THR
126
H
VAL
111
A
VAL
130
H
ALA
88
A
ALA
94
H
PRO
99
A
PRO
105
H
TYR
100
A
TYR
115
H
TRP
103
A
TRP
122
I
H
SER
120
A
SER
139
H
LEU
124
A
LEU
143
H
THR
135
A
THR
154
H
TYR
145
A
TYR
164
H
TYR
176
A
TYR
195
H
PRO
185
A
PRO
204
H
VAL
163
A
VAL
182
H
THR
165
A
THR
184
H
THR
131
A
THR
150
H
SER
132
A
SER
151
H
THR
135
A
THR
154
H
TYR
145
A
TYR
164
H
TYR
176
A
TYR
195
H
PRO
185
A
PRO
204
H
VAL
169
A
VAL
188
H
LEU
170
A
LEU
189
H
THR
151
A
THR
170
H
TRP
154
A
TRP
173
H
ILE
195
A
ILE
214
H
HIS
200
A
HIS
219
H
THR
205
A
THR
224
H
ARG
210
A
ARG
229
L
LEU
4
B
LEU
4
L
SER
7
B
SER
7
L
ILE
19
B
ILE
19
L
ALA
25
B
ALA
25
L
ALA
70
B
ALA
70
L
ILE
75
B
ILE
75
L
PHE
62
B
PHE
62
L
GLY
66
B
GLY
66
L
SER
10
B
SER
10
L
ALA
13
B
ALA
13
L
THR
102
B
THR
104
L
LEU
106
B
LEU
108
L
THR
85
B
THR
85
L
GLU
90
B
GLU
90
L
LEU
33
B
LEU
33
L
HIS
38
B
HIS
38
L
LYS
45
B
LYS
45
L
TYR
49
B
TYR
49
L
LYS
53
B
LYS
53
L
LEU
54
B
LEU
54
L
SER
114
B
SER
116
L
PHE
118
B
PHE
120
L
THR
129
B
THR
131
L
PHE
139
B
PHE
141
L
TYR
173
B
TYR
175
L
SER
182
B
SER
184
L
SER
159
B
SER
161
L
VAL
163
B
VAL
165
L
ALA
153
B
ALA
155
L
LEU
154
B
LEU
156
L
ALA
144
B
ALA
146
L
VAL
150
B
VAL
152
L
VAL
191
B
VAL
193
L
HIS
198
B
HIS
200
L
VAL
205
B
VAL
207
L
ASN
210
B
ASN
212
23
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