0.013371 0.007720 0.000000 0.000000 0.015439 0.000000 0.000000 0.000000 0.011579 0.00000 0.00000 0.00000 Ren, X. Pyle, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 74.790 74.790 86.360 C21 H22 N3 O9 P 491.388 n 2'-deoxy-5-{[(naphthalen-2-yl)methyl]carbamoyl}uridine 5'-(dihydrogen phosphate) RNA linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C10 H15 N2 O8 P 322.208 n THYMIDINE-3'-PHOSPHATE DNA linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C10 H14 N5 O6 P 331.222 y 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE DNA linking C9 H14 N3 O7 P 307.197 y 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE DNA linking C10 H14 N5 O7 P 347.221 y 2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE DNA linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N C Y 3 N C Y 4 N C Y 5 N C N 6 N C N 7 N C N 8 N C Y 9 N C Y 10 N C N 11 N O N 12 N N N 13 N O N 14 N C N 15 N N N 16 R C N 17 N O N 18 N C N 19 S C N 20 N O N 21 R C N 22 N C N 23 N O N 24 N P N 25 N O N 26 N O N 27 N O N 28 N N Y 29 N C Y 30 N C Y 31 N C Y 32 N C Y 33 N C N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N H N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N O N 57 N N N 58 S C N 59 N C N 60 N O N 61 N C N 62 N O N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N N N 71 S C N 72 N C N 73 N O N 74 N C N 75 N C N 76 N C N 77 N N N 78 N C N 79 N N N 80 N N N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N N N 98 S C N 99 N C N 100 N O N 101 N C N 102 N C N 103 N O N 104 N N N 105 N O N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N N N 115 S C N 116 N C N 117 N O N 118 N C N 119 N C N 120 N O N 121 N O N 122 N O N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N P N 131 N O N 132 N O N 133 N O N 134 N O N 135 N C N 136 R C N 137 N O N 138 S C N 139 N O N 140 N C N 141 S C N 142 N N N 143 N C N 144 N O N 145 N N N 146 N C N 147 N O N 148 N C N 149 N C N 150 N C N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N N N 167 R C N 168 N C N 169 N O N 170 N C N 171 N S N 172 N O N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N O N 181 N P N 182 N O N 183 N O N 184 N O N 185 N C N 186 R C N 187 N O N 188 S C N 189 N O N 190 N C N 191 R C Y 192 N N Y 193 N C Y 194 N N Y 195 N C Y 196 N C N 197 N N Y 198 N N Y 199 N C Y 200 N N Y 201 N C N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N O N 217 N P N 218 N O N 219 N O N 220 N O N 221 N C N 222 R C N 223 N O N 224 S C N 225 N O N 226 N C N 227 R C N 228 N N N 229 N C N 230 N O N 231 N N N 232 N C N 233 N N N 234 N C N 235 N C N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N O N 251 N P N 252 N O N 253 N O N 254 N O N 255 N C N 256 R C N 257 N O N 258 S C N 259 N O N 260 N C N 261 R C Y 262 N N Y 263 N C Y 264 N N Y 265 N C N 266 N C N 267 N O N 268 N N N 269 N C N 270 N N N 271 N N Y 272 N C N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N N N 288 S C N 289 N C N 290 N O N 291 N C N 292 N C N 293 N C N 294 N O N 295 N N N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C N 312 N C N 313 N C N 314 N O N 315 N O N 316 N O N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 N C N 328 N C N 329 N O N 330 N O N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N N N 337 S C N 338 N C N 339 N O N 340 N C Y 341 N C Y 342 N N Y 343 N C Y 344 N C Y 345 N N N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N O N 358 N H N 359 N H N 360 N N N 361 S C N 362 N C N 363 N O N 364 S C N 365 N C N 366 N C N 367 N C N 368 N O N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N N N 383 S C N 384 N C N 385 N O N 386 N C N 387 N C N 388 N C N 389 N C N 390 N O N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N N N 405 S C N 406 N C N 407 N O N 408 N C N 409 N C N 410 N C N 411 N C N 412 N N N 413 N O N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N N N 430 S C N 431 N C N 432 N O N 433 N C N 434 N C N 435 N S N 436 N C N 437 N O N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N MG N 450 N NA N 451 N N N 452 S C N 453 N C N 454 N O N 455 N C Y 456 N C Y 457 N C Y 458 N C Y 459 N C Y 460 N C Y 461 N C N 462 N O N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N P N 475 N O N 476 N O N 477 N O N 478 N O N 479 N N N 480 S C N 481 N C N 482 N O N 483 N C N 484 N C N 485 N C N 486 N O N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N N N 497 S C N 498 N C N 499 N O N 500 N C N 501 N O N 502 N O N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N N N 511 S C N 512 N C N 513 N O N 514 R C N 515 N O N 516 N C N 517 N O N 518 N H N 519 N H N 520 N H N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N N N 528 S C N 529 N C N 530 N O N 531 N C Y 532 N C Y 533 N C Y 534 N C Y 535 N N Y 536 N C Y 537 N C Y 538 N C Y 539 N C Y 540 N C N 541 N O N 542 N H N 543 N H N 544 N H N 545 N H N 546 N H N 547 N H N 548 N H N 549 N H N 550 N H N 551 N H N 552 N H N 553 N H N 554 N N N 555 S C N 556 N C N 557 N O N 558 N C Y 559 N C Y 560 N C Y 561 N C Y 562 N C Y 563 N C Y 564 N C N 565 N O N 566 N O N 567 N H N 568 N H N 569 N H N 570 N H N 571 N H N 572 N H N 573 N H N 574 N H N 575 N H N 576 N H N 577 N H N 578 N N N 579 S C N 580 N C N 581 N O N 582 N C N 583 N C N 584 N C N 585 N O N 586 N H N 587 N H N 588 N H N 589 N H N 590 N H N 591 N H N 592 N H N 593 N H N 594 N H N 595 N H N 596 N H Y 1 N doub Y 2 N sing Y 3 N sing Y 4 N doub Y 5 N doub Y 6 N sing Y 7 N sing Y 8 N sing Y 9 N doub Y 10 N doub Y 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N doub N 16 N sing N 17 N doub N 18 N sing N 19 N sing N 20 N doub N 21 N sing N 22 N sing N 23 N sing N 24 N doub N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N doub N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N doub N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N doub N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N doub N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N doub N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N doub N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N doub N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N doub N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N doub N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing Y 202 N sing Y 203 N sing Y 204 N doub N 205 N sing Y 206 N sing Y 207 N sing Y 208 N doub N 209 N sing Y 210 N doub N 211 N sing N 212 N sing Y 213 N sing Y 214 N doub N 215 N sing Y 216 N sing N 217 N sing N 218 N sing N 219 N doub N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N doub N 243 N sing N 244 N doub N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N doub N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N doub N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing Y 275 N sing Y 276 N sing Y 277 N doub N 278 N sing Y 279 N sing N 280 N sing Y 281 N doub N 282 N doub N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N doub N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N doub N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N doub N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N doub N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N doub N 344 N sing N 345 N sing N 346 N sing N 347 N sing Y 348 N sing Y 349 N doub Y 350 N doub N 351 N sing Y 352 N sing N 353 N sing Y 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N doub N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N doub N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N doub N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N doub N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N doub N 452 N sing N 453 N sing N 454 N sing N 455 N sing Y 456 N doub Y 457 N sing Y 458 N sing N 459 N sing Y 460 N doub N 461 N sing Y 462 N doub N 463 N sing Y 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N doub N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N doub N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N doub N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N doub N 509 N sing N 510 N sing N 511 N sing N 512 N sing N 513 N sing N 514 N sing N 515 N sing N 516 N sing N 517 N sing N 518 N sing N 519 N sing N 520 N sing N 521 N sing N 522 N sing N 523 N sing N 524 N doub N 525 N sing N 526 N sing N 527 N sing N 528 N sing Y 529 N doub Y 530 N sing Y 531 N sing N 532 N sing Y 533 N doub Y 534 N sing Y 535 N sing N 536 N sing Y 537 N sing Y 538 N doub N 539 N sing Y 540 N doub N 541 N sing Y 542 N sing N 543 N sing N 544 N sing N 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N sing N 550 N sing N 551 N sing N 552 N doub N 553 N sing N 554 N sing N 555 N sing N 556 N sing Y 557 N doub Y 558 N sing Y 559 N sing N 560 N sing Y 561 N doub N 562 N sing Y 563 N doub N 564 N sing Y 565 N sing N 566 N sing N 567 N sing N 568 N sing N 569 N sing N 570 N sing N 571 N sing N 572 N sing N 573 N sing N 574 N sing N 575 N sing N 576 N doub N 577 N sing N 578 N sing N 579 N sing N 580 N sing N 581 N sing N 582 N sing N 583 N sing N 584 N sing N 585 N sing N 586 N sing N 587 N sing UK Nat Commun 2041-1723 8 810 810 10.1038/s41467-017-00864-2 28993621 Structural basis for IL-1 alpha recognition by a modified DNA aptamer that specifically inhibits IL-1 alpha signaling. 2017 10.2210/pdb5uc6/pdb pdb_00005uc6 100 1 PIXEL 2014-03-20 DECTRIS PILATUS 6M-F SINGLE WAVELENGTH M x-ray 1 0.9999 1.0 24-ID-C APS 0.9999 SYNCHROTRON APS BEAMLINE 24-ID-C 18064.486 Interleukin-1 alpha residues 113-271 1 man polymer 8366.890 DNA (5'-D(*CP*G)-R(P*(85Y))-D(P*GP*AP*G)-R(P*(85Y)P*(85Y))-D(P*A)-R(P*(85Y))-D(P*GP*GP*G)-R(P*(85Y)P*(85Y))-D(P*AP*GP*AP*G)-R(P*(85Y))-D(P*CP*GP*(ATD))-3') 1 syn polymer 24.305 MAGNESIUM ION 4 syn non-polymer 22.990 SODIUM ION 1 syn non-polymer 94.971 PHOSPHATE ION 1 syn non-polymer 18.015 water 145 nat water IL-1 alpha,Hematopoietin-1 no no SAPFSFLSNVKYNFMRIIKYEFILNDALNQSIIRANDQYLTAAALHNLDEAVKFDMGAYKSSKDDAKITVILRISKTQLY VTAQDEDQPVLLKEMPEIPKTITGSETNLLFFWETHGTKNYFTSVAHPNLFIATKQDYWVCLAGGPPSITDFQILENQA SAPFSFLSNVKYNFMRIIKYEFILNDALNQSIIRANDQYLTAAALHNLDEAVKFDMGAYKSSKDDAKITVILRISKTQLY VTAQDEDQPVLLKEMPEIPKTITGSETNLLFFWETHGTKNYFTSVAHPNLFIATKQDYWVCLAGGPPSITDFQILENQA A polypeptide(L) no yes (DC)(DG)(85Y)(DG)(DA)(DG)(85Y)(85Y)(DA)(85Y)(DG)(DG)(DG)(85Y)(85Y)(DA)(DG)(DA) (DG)(85Y)(DC)(DG)(ATD) CGXGAGXXAXGGGXXAGAGXCGT B polydeoxyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 159 IL1A, IL1F1 9606 Homo sapiens 562 Escherichia coli Biological sequence 1 2.64 53.37 EVAPORATION 0.2 M NaCl, 0.1 M Na acetate, and 22% polyethylene glycol 8,000 291 3.097 1 19 B 1 B 22 -1.135 B_DC1:DG22_B 1 -3.220 -0.179 0.508 -0.183 2.991 1 19 B 2 B 21 -2.490 B_DG2:DC21_B 2 0.423 0.639 0.333 -0.215 26.127 4 7 B 4 B 19 -113.973 B_DG4:DG19_B 3 13.108 5.504 0.530 -0.110 -2.318 8 2 B 5 B 18 -176.296 B_DA5:DA18_B 4 -23.807 -5.691 0.312 -5.009 13.950 2 3 B 6 B 17 -172.278 B_DG6:DG17_B 5 18.538 1.143 0.196 -1.117 -1.494 1 20 B 8 B 16 -1.991 B_85Y8:DA16_B 6 -4.957 -0.198 0.294 -0.090 -11.219 1 20 B 9 B 15 -10.897 B_DA9:85Y15_B 7 -17.672 0.145 0.046 -0.099 2.015 -5.097 B B 1 2 -15.019 B B 22 21 3.739 1.283 -0.008 5.111 BB_DC1DG2:DC21DG22_BB 1 2.034 23.813 -4.495 -66.112 13.615 5.264 7.372 B B 5 6 -38.004 B B 18 17 4.821 -3.748 2.158 -3.804 BB_DA5DG6:DG17DA18_BB 2 5.848 -59.290 2.473 0.261 29.779 2.967 -142.328 B B 6 8 0.817 B B 17 16 2.977 -1.547 -0.237 -0.694 BB_DG685Y8:DA16DG17_BB 3 -7.600 -4.015 -142.238 0.374 -0.161 6.268 -12.823 B B 8 9 55.006 B B 16 15 3.693 -10.495 -0.077 5.067 BB_85Y8DA9:85Y15DA16_BB 4 0.450 2.357 -7.366 0.453 0.646 citation citation_author atom_site entity struct_conn struct_site atom_site pdbx_validate_rmsd_angle struct_conn pdbx_audit_support chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_conn_type repository Initial release Database references Atomic model Derived calculations Non-polymer description Structure summary Atomic model Data collection Derived calculations Author supporting evidence Data collection Database references Derived calculations Refinement description 1 0 2017-10-11 1 1 2017-10-18 2 0 2017-11-15 3 0 2018-08-22 3 1 2019-11-20 3 2 2023-10-04 _citation.country _citation.journal_abbrev _citation.journal_id_CSD _citation.journal_id_ISSN _citation.journal_volume _citation.page_first _citation.page_last _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.type_symbol _chem_comp.formula _chem_comp.id _chem_comp.name _entity.formula_weight _entity.pdbx_description _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_label_comp_id _struct_site.details _struct_site.pdbx_auth_comp_id _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_atom_id _atom_site.label_atom_id _struct_conn.pdbx_leaving_atom_flag _pdbx_audit_support.funding_organization _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id United States Howard Hughes Medical Institute (HHMI) N RCSB Y RCSB 2016-12-21 REL REL MG MAGNESIUM ION NA SODIUM ION PO4 PHOSPHATE ION HOH water 32630 synthetic construct sample 1 23 2ILA PDB experimental model MG 1 3 MG MG 201 A NA 2 4 NA NA 202 A MG 3 3 MG MG 203 A MG 4 3 MG MG 204 A MG 5 3 MG MG 205 A PO3 23 5 PO4 PO4 101 B HOH 131 6 HOH HOH 301 A HOH 76 6 HOH HOH 302 A HOH 89 6 HOH HOH 303 A HOH 69 6 HOH HOH 304 A HOH 102 6 HOH HOH 305 A HOH 35 6 HOH HOH 306 A HOH 130 6 HOH HOH 307 A HOH 121 6 HOH HOH 308 A HOH 28 6 HOH HOH 309 A HOH 10 6 HOH HOH 310 A HOH 21 6 HOH HOH 311 A HOH 137 6 HOH HOH 312 A HOH 100 6 HOH HOH 313 A HOH 68 6 HOH HOH 314 A HOH 4 6 HOH HOH 315 A HOH 140 6 HOH HOH 316 A HOH 111 6 HOH HOH 317 A HOH 27 6 HOH HOH 318 A HOH 55 6 HOH HOH 319 A HOH 17 6 HOH HOH 320 A HOH 30 6 HOH HOH 321 A HOH 53 6 HOH HOH 322 A HOH 94 6 HOH HOH 323 A HOH 3 6 HOH HOH 324 A HOH 80 6 HOH HOH 325 A HOH 1 6 HOH HOH 326 A HOH 96 6 HOH HOH 327 A HOH 105 6 HOH HOH 328 A HOH 75 6 HOH HOH 329 A HOH 32 6 HOH HOH 330 A HOH 85 6 HOH HOH 331 A HOH 45 6 HOH HOH 332 A HOH 19 6 HOH HOH 333 A HOH 59 6 HOH HOH 334 A HOH 38 6 HOH HOH 335 A HOH 41 6 HOH HOH 336 A HOH 44 6 HOH HOH 337 A HOH 40 6 HOH HOH 338 A HOH 79 6 HOH HOH 339 A HOH 7 6 HOH HOH 340 A HOH 115 6 HOH HOH 341 A HOH 34 6 HOH HOH 342 A HOH 22 6 HOH HOH 343 A HOH 120 6 HOH HOH 344 A HOH 8 6 HOH HOH 345 A HOH 119 6 HOH HOH 346 A HOH 57 6 HOH HOH 347 A HOH 128 6 HOH HOH 348 A HOH 127 6 HOH HOH 349 A HOH 87 6 HOH HOH 350 A HOH 11 6 HOH HOH 351 A HOH 47 6 HOH HOH 352 A HOH 18 6 HOH HOH 353 A HOH 109 6 HOH HOH 354 A HOH 39 6 HOH HOH 355 A HOH 97 6 HOH HOH 356 A HOH 5 6 HOH HOH 357 A HOH 33 6 HOH HOH 358 A HOH 113 6 HOH HOH 359 A HOH 125 6 HOH HOH 360 A HOH 46 6 HOH HOH 361 A HOH 61 6 HOH HOH 362 A HOH 37 6 HOH HOH 363 A HOH 13 6 HOH HOH 364 A HOH 123 6 HOH HOH 365 A HOH 26 6 HOH HOH 366 A HOH 29 6 HOH HOH 367 A HOH 103 6 HOH HOH 368 A HOH 138 6 HOH HOH 369 A HOH 6 6 HOH HOH 370 A HOH 122 6 HOH HOH 371 A HOH 133 6 HOH HOH 372 A HOH 135 6 HOH HOH 373 A HOH 116 6 HOH HOH 374 A HOH 134 6 HOH HOH 375 A HOH 64 6 HOH HOH 376 A HOH 126 6 HOH HOH 377 A HOH 110 6 HOH HOH 378 A HOH 74 6 HOH HOH 379 A HOH 101 6 HOH HOH 380 A HOH 118 6 HOH HOH 381 A HOH 65 6 HOH HOH 382 A HOH 95 6 HOH HOH 383 A HOH 73 6 HOH HOH 384 A HOH 141 6 HOH HOH 385 A HOH 142 6 HOH HOH 386 A HOH 132 6 HOH HOH 387 A HOH 136 6 HOH HOH 388 A HOH 48 6 HOH HOH 389 A HOH 81 6 HOH HOH 390 A HOH 50 6 HOH HOH 391 A HOH 42 6 HOH HOH 201 B HOH 144 6 HOH HOH 202 B HOH 12 6 HOH HOH 203 B HOH 145 6 HOH HOH 204 B HOH 92 6 HOH HOH 205 B HOH 23 6 HOH HOH 206 B HOH 71 6 HOH HOH 207 B HOH 14 6 HOH HOH 208 B HOH 66 6 HOH HOH 209 B HOH 52 6 HOH HOH 210 B HOH 90 6 HOH HOH 211 B HOH 67 6 HOH HOH 212 B HOH 36 6 HOH HOH 213 B HOH 20 6 HOH HOH 214 B HOH 106 6 HOH HOH 215 B HOH 15 6 HOH HOH 216 B HOH 16 6 HOH HOH 217 B HOH 108 6 HOH HOH 218 B HOH 124 6 HOH HOH 219 B HOH 49 6 HOH HOH 220 B HOH 104 6 HOH HOH 221 B HOH 2 6 HOH HOH 222 B HOH 58 6 HOH HOH 223 B HOH 56 6 HOH HOH 224 B HOH 77 6 HOH HOH 225 B HOH 63 6 HOH HOH 226 B HOH 129 6 HOH HOH 227 B HOH 24 6 HOH HOH 228 B HOH 143 6 HOH HOH 229 B HOH 88 6 HOH HOH 230 B HOH 107 6 HOH HOH 231 B HOH 114 6 HOH HOH 232 B HOH 9 6 HOH HOH 233 B HOH 78 6 HOH HOH 234 B HOH 43 6 HOH HOH 235 B HOH 51 6 HOH HOH 236 B HOH 62 6 HOH HOH 237 B HOH 139 6 HOH HOH 238 B HOH 83 6 HOH HOH 239 B HOH 91 6 HOH HOH 240 B HOH 99 6 HOH HOH 241 B HOH 84 6 HOH HOH 242 B HOH 112 6 HOH HOH 243 B HOH 86 6 HOH HOH 244 B HOH 25 6 HOH HOH 245 B HOH 60 6 HOH HOH 246 B HOH 82 6 HOH HOH 247 B HOH 72 6 HOH HOH 248 B HOH 54 6 HOH HOH 249 B HOH 93 6 HOH HOH 250 B HOH 98 6 HOH HOH 251 B HOH 117 6 HOH HOH 252 B HOH 70 6 HOH HOH 253 B HOH 31 6 HOH HOH 254 B n 1 1 A n 2 2 A n 3 3 A n 4 4 A n 5 5 A n 6 6 A n 7 7 A n 8 8 A ASN 9 n 9 ASN 9 A VAL 10 n 10 VAL 10 A LYS 11 n 11 LYS 11 A TYR 12 n 12 TYR 12 A ASN 13 n 13 ASN 13 A PHE 14 n 14 PHE 14 A MET 15 n 15 MET 15 A ARG 16 n 16 ARG 16 A ILE 17 n 17 ILE 17 A ILE 18 n 18 ILE 18 A LYS 19 n 19 LYS 19 A TYR 20 n 20 TYR 20 A GLU 21 n 21 GLU 21 A PHE 22 n 22 PHE 22 A ILE 23 n 23 ILE 23 A LEU 24 n 24 LEU 24 A ASN 25 n 25 ASN 25 A ASP 26 n 26 ASP 26 A ALA 27 n 27 ALA 27 A LEU 28 n 28 LEU 28 A ASN 29 n 29 ASN 29 A GLN 30 n 30 GLN 30 A SER 31 n 31 SER 31 A ILE 32 n 32 ILE 32 A ILE 33 n 33 ILE 33 A ARG 34 n 34 ARG 34 A ALA 35 n 35 ALA 35 A ASN 36 n 36 ASN 36 A ASP 37 n 37 ASP 37 A GLN 38 n 38 GLN 38 A TYR 39 n 39 TYR 39 A LEU 40 n 40 LEU 40 A THR 41 n 41 THR 41 A ALA 42 n 42 ALA 42 A ALA 43 n 43 ALA 43 A ALA 44 n 44 ALA 44 A LEU 45 n 45 LEU 45 A HIS 46 n 46 HIS 46 A ASN 47 n 47 ASN 47 A LEU 48 n 48 LEU 48 A ASP 49 n 49 ASP 49 A GLU 50 n 50 GLU 50 A ALA 51 n 51 ALA 51 A VAL 52 n 52 VAL 52 A LYS 53 n 53 LYS 53 A PHE 54 n 54 PHE 54 A ASP 55 n 55 ASP 55 A MET 56 n 56 MET 56 A GLY 57 n 57 GLY 57 A ALA 58 n 58 ALA 58 A TYR 59 n 59 TYR 59 A LYS 60 n 60 LYS 60 A SER 61 n 61 SER 61 A SER 62 n 62 SER 62 A LYS 63 n 63 LYS 63 A ASP 64 n 64 ASP 64 A ASP 65 n 65 ASP 65 A ALA 66 n 66 ALA 66 A LYS 67 n 67 LYS 67 A ILE 68 n 68 ILE 68 A THR 69 n 69 THR 69 A VAL 70 n 70 VAL 70 A ILE 71 n 71 ILE 71 A LEU 72 n 72 LEU 72 A ARG 73 n 73 ARG 73 A ILE 74 n 74 ILE 74 A SER 75 n 75 SER 75 A LYS 76 n 76 LYS 76 A THR 77 n 77 THR 77 A GLN 78 n 78 GLN 78 A LEU 79 n 79 LEU 79 A TYR 80 n 80 TYR 80 A VAL 81 n 81 VAL 81 A THR 82 n 82 THR 82 A ALA 83 n 83 ALA 83 A GLN 84 n 84 GLN 84 A ASP 85 n 85 ASP 85 A GLU 86 n 86 GLU 86 A ASP 87 n 87 ASP 87 A GLN 88 n 88 GLN 88 A PRO 89 n 89 PRO 89 A VAL 90 n 90 VAL 90 A LEU 91 n 91 LEU 91 A LEU 92 n 92 LEU 92 A LYS 93 n 93 LYS 93 A GLU 94 n 94 GLU 94 A MET 95 n 95 MET 95 A PRO 96 n 96 PRO 96 A GLU 97 n 97 GLU 97 A ILE 98 n 98 ILE 98 A PRO 99 n 99 PRO 99 A LYS 100 n 100 LYS 100 A THR 101 n 101 THR 101 A ILE 102 n 102 ILE 102 A THR 103 n 103 THR 103 A GLY 104 n 104 GLY 104 A SER 105 n 105 SER 105 A GLU 106 n 106 GLU 106 A THR 107 n 107 THR 107 A ASN 108 n 108 ASN 108 A LEU 109 n 109 LEU 109 A LEU 110 n 110 LEU 110 A PHE 111 n 111 PHE 111 A PHE 112 n 112 PHE 112 A TRP 113 n 113 TRP 113 A GLU 114 n 114 GLU 114 A THR 115 n 115 THR 115 A HIS 116 n 116 HIS 116 A GLY 117 n 117 GLY 117 A THR 118 n 118 THR 118 A LYS 119 n 119 LYS 119 A ASN 120 n 120 ASN 120 A TYR 121 n 121 TYR 121 A PHE 122 n 122 PHE 122 A THR 123 n 123 THR 123 A SER 124 n 124 SER 124 A VAL 125 n 125 VAL 125 A ALA 126 n 126 ALA 126 A HIS 127 n 127 HIS 127 A PRO 128 n 128 PRO 128 A ASN 129 n 129 ASN 129 A LEU 130 n 130 LEU 130 A PHE 131 n 131 PHE 131 A ILE 132 n 132 ILE 132 A ALA 133 n 133 ALA 133 A THR 134 n 134 THR 134 A LYS 135 n 135 LYS 135 A GLN 136 n 136 GLN 136 A ASP 137 n 137 ASP 137 A TYR 138 n 138 TYR 138 A TRP 139 n 139 TRP 139 A VAL 140 n 140 VAL 140 A CYS 141 n 141 CYS 141 A LEU 142 n 142 LEU 142 A ALA 143 n 143 ALA 143 A GLY 144 n 144 GLY 144 A GLY 145 n 145 GLY 145 A PRO 146 n 146 PRO 146 A PRO 147 n 147 PRO 147 A SER 148 n 148 SER 148 A ILE 149 n 149 ILE 149 A THR 150 n 150 THR 150 A ASP 151 n 151 ASP 151 A PHE 152 n 152 PHE 152 A GLN 153 n 153 GLN 153 A ILE 154 n 154 ILE 154 A LEU 155 n 155 LEU 155 A GLU 156 n 156 GLU 156 A ASN 157 n 157 ASN 157 A GLN 158 n 158 GLN 158 A ALA 159 n 159 ALA 159 A DC 1 n 1 DC 1 B DG 2 n 2 DG 2 B 2VJ 3 n 3 85Y 3 B DG 4 n 4 DG 4 B DA 5 n 5 DA 5 B DG 6 n 6 DG 6 B 2VJ 7 n 7 85Y 7 B 2VJ 8 n 8 85Y 8 B DA 9 n 9 DA 9 B 2VJ 10 n 10 85Y 10 B DG 11 n 11 DG 11 B DG 12 n 12 DG 12 B DG 13 n 13 DG 13 B 2VJ 14 n 14 85Y 14 B 2VJ 15 n 15 85Y 15 B DA 16 n 16 DA 16 B DG 17 n 17 DG 17 B DA 18 n 18 DA 18 B DG 19 n 19 DG 19 B 2VJ 20 n 20 85Y 20 B DC 21 n 21 DC 21 B DG 22 n 22 DG 22 B n 23 23 B author_and_software_defined_assembly PISA 2 dimeric 1690 -31 10720 A ASP 64 A OD1 ASP 64 1_555 A NA 202 D NA NA 1_555 A ASP 65 A O ASP 65 1_555 106.0 A ASP 64 A OD1 ASP 64 1_555 A NA 202 D NA NA 1_555 A HOH 333 I O HOH 1_555 80.9 A ASP 65 A O ASP 65 1_555 A NA 202 D NA NA 1_555 A HOH 333 I O HOH 1_555 79.1 A ASP 64 A OD1 ASP 64 1_555 A NA 202 D NA NA 1_555 B 85Y 7 B O21 85Y 7 1_555 91.8 A ASP 65 A O ASP 65 1_555 A NA 202 D NA NA 1_555 B 85Y 7 B O21 85Y 7 1_555 86.9 A HOH 333 I O HOH 1_555 A NA 202 D NA NA 1_555 B 85Y 7 B O21 85Y 7 1_555 161.6 A ASP 64 A OD1 ASP 64 1_555 A NA 202 D NA NA 1_555 B HOH 222 J O HOH 1_555 160.5 A ASP 65 A O ASP 65 1_555 A NA 202 D NA NA 1_555 B HOH 222 J O HOH 1_555 93.1 A HOH 333 I O HOH 1_555 A NA 202 D NA NA 1_555 B HOH 222 J O HOH 1_555 99.0 B 85Y 7 B O21 85Y 7 1_555 A NA 202 D NA NA 1_555 B HOH 222 J O HOH 1_555 93.5 A ASP 64 A OD1 ASP 64 1_555 A NA 202 D NA NA 1_555 B HOH 245 J O HOH 1_555 89.3 A ASP 65 A O ASP 65 1_555 A NA 202 D NA NA 1_555 B HOH 245 J O HOH 1_555 163.3 A HOH 333 I O HOH 1_555 A NA 202 D NA NA 1_555 B HOH 245 J O HOH 1_555 97.0 B 85Y 7 B O21 85Y 7 1_555 A NA 202 D NA NA 1_555 B HOH 245 J O HOH 1_555 99.8 B HOH 222 J O HOH 1_555 A NA 202 D NA NA 1_555 B HOH 245 J O HOH 1_555 71.3 A VAL 90 A O VAL 90 1_555 A MG 204 F MG MG 1_555 A VAL 140 A O VAL 140 1_555 103.3 A ASN 108 A O ASN 108 1_555 A MG 205 G MG MG 1_555 A LEU 110 A O LEU 110 1_555 106.0 A ASN 108 A O ASN 108 1_555 A MG 205 G MG MG 1_555 A SER 124 A OG SER 124 1_555 138.0 A LEU 110 A O LEU 110 1_555 A MG 205 G MG MG 1_555 A SER 124 A OG SER 124 1_555 113.8 A ILE 132 A O ILE 132 1_555 A MG 203 E MG MG 1_555 A THR 150 A O THR 150 1_555 92.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 102 A O ILE 102 A N TYR 12 A N TYR 12 A N ASN 25 A N ASN 25 A O GLN 153 A O GLN 153 A O PHE 152 A O PHE 152 A N ASN 120 A N ASN 120 A O THR 123 A O THR 123 A N PHE 112 A N PHE 112 A O PHE 111 A O PHE 111 A N VAL 70 A N VAL 70 A O ARG 73 A O ARG 73 A N ASP 55 A N ASP 55 A O ALA 58 A O ALA 58 A N MET 15 A N MET 15 A N SER 31 A N SER 31 A O ALA 43 A O ALA 43 A N TYR 80 A N TYR 80 A O LYS 93 A O LYS 93 A N PHE 131 A N PHE 131 A O ALA 143 A O ALA 143 1 A HOH 375 I HOH 1 A SER 1 A SER 1 1 Y 1 A ALA 2 A ALA 2 1 Y 1 A PRO 3 A PRO 3 1 Y 1 A PHE 4 A PHE 4 1 Y 1 A SER 5 A SER 5 1 Y 1 A PHE 6 A PHE 6 1 Y 1 A LEU 7 A LEU 7 1 Y 1 A SER 8 A SER 8 1 Y 1 B ATD 23 B ATD 23 1 Y 1 A A O O HOH HOH 360 385 2.02 1 B B O O HOH HOH 226 248 2.03 1 A B O O HOH HOH 328 218 2.03 1 A A OD1 O ASP HOH 49 301 2.07 1 B B O O HOH HOH 236 247 2.09 1 A A O O HOH HOH 348 377 2.19 1 9.42 1.20 119.70 129.12 B B B C3' O3' P DG DG 85Y 2 2 3 Y 1 -21.51 1.90 104.00 82.49 B B B O3' P O5' DG 85Y 85Y 2 3 3 Y 1 6.79 1.10 110.50 117.29 B B B O3' P OP1 DG 85Y 85Y 2 3 3 Y 1 -8.15 1.20 119.70 111.55 B B B C3' O3' P 85Y 85Y DG 3 3 4 Y 1 12.61 1.10 110.50 123.11 B B B O3' P OP2 85Y DG DG 3 4 4 Y 1 6.78 1.10 110.50 117.28 B B B O3' P OP2 DG 85Y 85Y 6 7 7 Y 1 9.46 1.20 119.70 129.16 B B B C3' O3' P 85Y 85Y 85Y 7 7 8 Y 1 7.28 1.20 119.70 126.98 B B B C3' O3' P DA DA 85Y 9 9 10 Y 1 6.67 1.10 110.50 117.17 B B B O3' P OP2 DA 85Y 85Y 9 10 10 Y 1 2.08 0.30 108.30 110.38 B B B O4' C1' N9 DG DG DG 11 11 11 N 1 1.89 0.30 108.30 110.19 B B B O4' C1' N9 DG DG DG 13 13 13 N 1 19.61 1.20 119.70 139.31 B B B C3' O3' P DG DG 85Y 13 13 14 Y 1 11.59 1.20 119.70 131.29 B B B C3' O3' P 85Y 85Y DA 15 15 16 Y 1 6.88 1.10 110.50 117.38 B B B O3' P OP2 85Y DA DA 15 16 16 Y 1 17.94 1.90 104.00 121.94 B B B O3' P O5' DG 85Y 85Y 19 20 20 Y 1 7.17 1.10 110.50 117.67 B B B O3' P OP2 DG 85Y 85Y 19 20 20 Y 1 -26.89 2.20 105.20 78.31 B B B O3' P OP1 DG 85Y 85Y 19 20 20 Y 1 46.86 1.90 104.00 150.86 B B B O3' P O5' 85Y DC DC 20 21 21 Y 1 -34.29 2.20 105.20 70.91 B B B O3' P OP1 85Y DC DC 20 21 21 Y 1 B B O3' C3' DA DA 5 5 -0.041 0.006 1.419 1.378 N 1 B B O3' C3' DG DG 17 17 -0.038 0.006 1.419 1.381 N 1 A B O O HOH HOH 346 243 2.18 1_555 3_884 1 A MET 15 -96.55 -75.37 1 A ASN 36 -132.46 -126.60 1 A GLN 84 -109.96 -131.05 0.2193 0.1776 0.1794 2.100 64.770 787 16627 4.73 99.08 0.19 RANDOM 1 THROUGHOUT 1.34 MOLECULAR REPLACEMENT 22.45 0.90 1.11 2ILA ML FLAT BULK SOLVENT MODEL 2.100 64.770 145 1916 9 548 1214 0.007 1863 1.344 2581 20.686 966 0.097 279 0.006 244 0.2648 0.2144 2.2316 130 2626 100.00 0.2762 0.2278 2.4039 120 2625 100.00 0.2707 0.2170 2.6458 132 2598 100.00 0.2314 0.2106 3.0287 164 2601 99.00 0.1853 0.1648 3.8158 123 2658 99.00 0.2009 0.1497 64.8006 118 2732 97.00 2.1 64.77 5UC6 16642 0.092 1 11.2 9.7 99.5 0.56 2.1 2.21 3.4 1 9.9 100 refinement PHENIX (1.11.1_2575) data reduction iMOSFLM data scaling SCALA phasing PHASER N Structural insights into IL-1 alpha recognition by a naphthyl-modified aptamer that mimics IL-1RI Domain III 1 N N 2 N N 3 N N 4 N N 3 N N 3 N N 3 N N 5 N N 6 N N 6 N N A ASN 47 A ASN 47 HELX_P A ALA 51 A ALA 51 5 AA1 5 A SER 105 A SER 105 HELX_P A LEU 109 A LEU 109 5 AA2 5 covale 1.558 both B DG 2 B O3' DG 2 1_555 B 85Y 3 B P 85Y 3 1_555 covale 1.562 one B 85Y 3 B O3' 85Y 3 1_555 B DG 4 B P DG 4 1_555 covale 1.562 both B DG 6 B O3' DG 6 1_555 B 85Y 7 B P 85Y 7 1_555 covale 1.562 one B 85Y 7 B O3' 85Y 7 1_555 B 85Y 8 B P 85Y 8 1_555 covale 1.558 one B 85Y 8 B O3' 85Y 8 1_555 B DA 9 B P DA 9 1_555 covale 1.557 both B DA 9 B O3' DA 9 1_555 B 85Y 10 B P 85Y 10 1_555 covale 1.564 one B 85Y 10 B O3' 85Y 10 1_555 B DG 11 B P DG 11 1_555 covale 1.561 both B DG 13 B O3' DG 13 1_555 B 85Y 14 B P 85Y 14 1_555 covale 1.562 one B 85Y 14 B O3' 85Y 14 1_555 B 85Y 15 B P 85Y 15 1_555 covale 1.560 one B 85Y 15 B O3' 85Y 15 1_555 B DA 16 B P DA 16 1_555 covale 1.559 both B DG 19 B O3' DG 19 1_555 B 85Y 20 B P 85Y 20 1_555 covale 1.557 one B 85Y 20 B O3' 85Y 20 1_555 B DC 21 B P DC 21 1_555 covale 1.559 one B DG 22 B O3' DG 22 1_555 B PO4 101 H P PO4 1_555 metalc 2.857 A LYS 11 A O LYS 11 1_555 A MG 201 C MG MG 1_555 metalc 2.399 A ASP 64 A OD1 ASP 64 1_555 A NA 202 D NA NA 1_555 metalc 2.344 A ASP 65 A O ASP 65 1_555 A NA 202 D NA NA 1_555 metalc 2.795 A VAL 90 A O VAL 90 1_555 A MG 204 F MG MG 1_555 metalc 2.894 A ASN 108 A O ASN 108 1_555 A MG 205 G MG MG 1_555 metalc 2.777 A LEU 110 A O LEU 110 1_555 A MG 205 G MG MG 1_555 metalc 2.620 A SER 124 A OG SER 124 1_555 A MG 205 G MG MG 1_555 metalc 2.963 A ILE 132 A O ILE 132 1_555 A MG 203 E MG MG 1_555 metalc 2.942 A VAL 140 A O VAL 140 1_555 A MG 204 F MG MG 1_555 metalc 2.552 A THR 150 A O THR 150 1_555 A MG 203 E MG MG 1_555 metalc 2.422 A NA 202 D NA NA 1_555 A HOH 333 I O HOH 1_555 metalc 2.526 A NA 202 D NA NA 1_555 B 85Y 7 B O21 85Y 7 1_555 metalc 2.198 A NA 202 D NA NA 1_555 B HOH 222 J O HOH 1_555 metalc 2.627 A NA 202 D NA NA 1_555 B HOH 245 J O HOH 1_555 hydrog WATSON-CRICK B DC 1 B N3 DC 1 1_555 B DG 22 B N1 DG 22 1_555 hydrog WATSON-CRICK B DC 1 B N4 DC 1 1_555 B DG 22 B O6 DG 22 1_555 hydrog WATSON-CRICK B DC 1 B O2 DC 1 1_555 B DG 22 B N2 DG 22 1_555 hydrog WATSON-CRICK B DG 2 B N1 DG 2 1_555 B DC 21 B N3 DC 21 1_555 hydrog WATSON-CRICK B DG 2 B N2 DG 2 1_555 B DC 21 B O2 DC 21 1_555 hydrog WATSON-CRICK B DG 2 B O6 DG 2 1_555 B DC 21 B N4 DC 21 1_555 hydrog REVERSED HOOGSTEEN B 85Y 3 B N3 85Y 3 1_555 B DA 16 B N7 DA 16 1_555 hydrog REVERSED HOOGSTEEN B 85Y 3 B O2 85Y 3 1_555 B DA 16 B N6 DA 16 1_555 hydrog TYPE_4_PAIR B DG 4 B N2 DG 4 1_555 B DG 17 B N3 DG 17 1_555 hydrog TYPE_4_PAIR B DG 4 B N3 DG 4 1_555 B DG 17 B N2 DG 17 1_555 hydrog TYPE_7_PAIR B DG 4 B N1 DG 4 1_555 B DG 19 B N7 DG 19 1_555 hydrog TYPE_7_PAIR B DG 4 B N2 DG 4 1_555 B DG 19 B O6 DG 19 1_555 hydrog TYPE_2_PAIR B DA 5 B N6 DA 5 1_555 B DA 18 B N7 DA 18 1_555 hydrog TYPE_2_PAIR B DA 5 B N7 DA 5 1_555 B DA 18 B N6 DA 18 1_555 hydrog TYPE_3_PAIR B DG 6 B N1 DG 6 1_555 B DG 17 B O6 DG 17 1_555 hydrog TYPE_3_PAIR B DG 6 B O6 DG 6 1_555 B DG 17 B N1 DG 17 1_555 hydrog WATSON-CRICK B 85Y 8 B N3 85Y 8 1_555 B DA 16 B N1 DA 16 1_555 hydrog WATSON-CRICK B 85Y 8 B O4 85Y 8 1_555 B DA 16 B N6 DA 16 1_555 hydrog WATSON-CRICK B DA 9 B N1 DA 9 1_555 B 85Y 15 B N3 85Y 15 1_555 hydrog WATSON-CRICK B DA 9 B N6 DA 9 1_555 B 85Y 15 B O4 85Y 15 1_555 IMMUNE SYSTEM/DNA SOMAmer, IMMUNE SYSTEM-DNA complex A PRO 146 A PRO 146 1 A PRO 147 A PRO 147 3.92 IL1A_HUMAN UNP 1 113 P01583 SAPFSFLSNVKYNFMRIIKYEFILNDALNQSIIRANDQYLTAAALHNLDEAVKFDMGAYKSSKDDAKITVILRISKTQLY VTAQDEDQPVLLKEMPEIPKTITGSETNLLFFWETHGTKNYFTSVAHPNLFIATKQDYWVCLAGGPPSITDFQILENQA 5UC6 PDB 2 1 5UC6 113 271 5UC6 1 159 P01583 A 1 1 159 1 23 5UC6 1 23 5UC6 B 2 1 23 8 2 2 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 101 A THR 101 A THR 103 A THR 103 A LYS 11 A LYS 11 A ASP 26 A ASP 26 A PHE 152 A PHE 152 A LEU 155 A LEU 155 A LYS 119 A LYS 119 A SER 124 A SER 124 A PHE 111 A PHE 111 A HIS 116 A HIS 116 A THR 69 A THR 69 A ILE 74 A ILE 74 A PHE 54 A PHE 54 A SER 61 A SER 61 A LYS 11 A LYS 11 A ASP 26 A ASP 26 A SER 31 A SER 31 A ARG 34 A ARG 34 A LEU 40 A LEU 40 A ALA 43 A ALA 43 A LEU 79 A LEU 79 A THR 82 A THR 82 A LEU 91 A LEU 91 A GLU 94 A GLU 94 A PHE 131 A PHE 131 A ALA 133 A ALA 133 A CYS 141 A CYS 141 A ALA 143 A ALA 143 binding site for residue MG A 201 A MG 201 Software 5 binding site for residue NA A 202 A NA 202 Software 6 binding site for residue MG A 203 A MG 203 Software 5 binding site for residue MG A 204 A MG 204 Software 6 binding site for residue MG A 205 A MG 205 Software 6 binding site for residue PO4 B 101 B PO4 101 Software 2 A LYS 11 A LYS 11 5 1_555 A ASN 13 A ASN 13 5 1_555 A LYS 60 A LYS 60 5 1_555 A SER 61 A SER 61 5 1_555 A SER 62 A SER 62 5 1_555 A ASP 64 A ASP 64 6 1_555 A ASP 65 A ASP 65 6 1_555 A HOH 333 I HOH 6 1_555 B 85Y 7 B 85Y 7 6 1_555 B HOH 222 J HOH 6 1_555 B HOH 245 J HOH 6 1_555 A TYR 121 A TYR 121 5 1_555 A PHE 122 A PHE 122 5 1_555 A ILE 132 A ILE 132 5 1_555 A THR 150 A THR 150 5 1_555 A PHE 152 A PHE 152 5 1_555 A TYR 39 A TYR 39 6 1_555 A LEU 40 A LEU 40 6 1_555 A PRO 89 A PRO 89 6 1_555 A VAL 90 A VAL 90 6 1_555 A TRP 139 A TRP 139 6 1_555 A VAL 140 A VAL 140 6 1_555 A ALA 83 A ALA 83 6 1_555 A THR 107 A THR 107 6 1_555 A ASN 108 A ASN 108 6 1_555 A LEU 110 A LEU 110 6 1_555 A SER 124 A SER 124 6 1_555 A VAL 125 A VAL 125 6 1_555 B DG 22 B DG 22 2 1_555 B HOH 229 J HOH 2 1_555 152 P 31 2 1