0.007695
0.004442
0.000000
0.000000
0.008885
0.000000
0.000000
0.000000
0.007038
0.00000
0.00000
0.00000
Taylor, A.B.
Cao, X.
Hart, P.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
120.00
129.962
129.962
142.076
C25 H28 N4 O4 S
480.579
(S)-N-(3-methyl-1-(methylamino)-1-oxobutan-2-yl)-5-(4-(((4-oxo-4,5,6,7-tetrahydro-3H-cyclopenta[d]pyrimidin-2-yl)thio)methyl)phenyl)furan-2-carboxamide
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Ca 2
40.078
CALCIUM ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
C
N
2
N
N
N
3
N
C
N
4
N
O
N
5
S
C
N
6
N
C
N
7
N
C
N
8
N
C
N
9
N
N
N
10
N
C
N
11
N
O
Y
12
N
C
Y
13
N
C
Y
14
N
C
Y
15
N
C
Y
16
N
O
Y
17
N
C
Y
18
N
C
Y
19
N
C
Y
20
N
C
Y
21
N
C
Y
22
N
C
N
23
N
C
N
24
N
S
N
25
N
C
N
26
N
N
N
27
N
C
N
28
N
C
N
29
N
C
N
30
N
N
N
31
N
C
N
32
N
C
N
33
N
C
N
34
N
O
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
N
N
64
S
C
N
65
N
C
N
66
N
O
N
67
N
C
N
68
N
O
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
N
N
77
S
C
N
78
N
C
N
79
N
O
N
80
N
C
N
81
N
C
N
82
N
C
N
83
N
N
N
84
N
C
N
85
N
N
N
86
N
N
N
87
N
O
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
N
N
104
S
C
N
105
N
C
N
106
N
O
N
107
N
C
N
108
N
C
N
109
N
O
N
110
N
N
N
111
N
O
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
N
N
121
S
C
N
122
N
C
N
123
N
O
N
124
N
C
N
125
N
C
N
126
N
O
N
127
N
O
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
CA
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
C
N
143
N
C
N
144
N
O
N
145
N
N
N
146
N
O
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
N
N
158
S
C
N
159
N
C
N
160
N
O
N
161
N
C
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
O
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
N
N
177
N
C
N
178
N
C
N
179
N
O
N
180
N
O
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
N
N
187
S
C
N
188
N
C
N
189
N
O
N
190
N
C
Y
191
N
C
Y
192
N
N
Y
193
N
C
Y
194
N
C
Y
195
N
N
N
196
N
O
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
N
N
211
S
C
N
212
N
C
N
213
N
O
N
214
S
C
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
N
N
233
S
C
N
234
N
C
N
235
N
O
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
C
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
N
N
255
S
C
N
256
N
C
N
257
N
O
N
258
N
C
N
259
N
C
N
260
N
C
N
261
N
C
N
262
N
N
N
263
N
O
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
S
N
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
Y
309
N
C
N
310
N
O
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
N
327
N
C
N
328
N
C
N
329
N
O
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
N
N
340
S
C
N
341
N
C
N
342
N
O
N
343
N
C
N
344
N
O
N
345
N
O
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
R
C
N
358
N
O
N
359
N
C
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
N
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
N
384
N
O
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
N
N
398
S
C
N
399
N
C
N
400
N
O
N
401
N
C
Y
402
N
C
Y
403
N
C
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
N
408
N
O
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
N
N
422
S
C
N
423
N
C
N
424
N
O
N
425
N
C
N
426
N
C
N
427
N
C
N
428
N
O
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
H
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
ZN
Y
1
N
sing
Y
2
N
doub
Y
3
N
doub
Y
4
N
doub
Y
5
N
sing
Y
6
N
sing
N
7
N
doub
N
8
N
sing
Y
9
N
sing
Y
10
N
sing
N
11
N
sing
Y
12
N
doub
N
13
N
sing
N
14
N
sing
N
15
N
doub
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
Y
22
N
doub
N
23
N
sing
N
24
N
doub
N
25
N
sing
Y
26
N
sing
N
27
N
sing
N
28
N
doub
N
29
N
doub
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
doub
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
doub
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
doub
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
doub
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
doub
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
Y
192
N
sing
Y
193
N
doub
Y
194
N
doub
N
195
N
sing
Y
196
N
sing
N
197
N
sing
Y
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
doub
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
doub
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
doub
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
Y
300
N
doub
Y
301
N
sing
Y
302
N
sing
N
303
N
sing
Y
304
N
doub
N
305
N
sing
Y
306
N
doub
N
307
N
sing
Y
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
doub
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
doub
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
Y
369
N
doub
Y
370
N
sing
Y
371
N
sing
N
372
N
sing
Y
373
N
doub
Y
374
N
sing
Y
375
N
sing
N
376
N
sing
Y
377
N
sing
Y
378
N
doub
N
379
N
sing
Y
380
N
doub
N
381
N
sing
Y
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
Y
397
N
doub
Y
398
N
sing
Y
399
N
sing
N
400
N
sing
Y
401
N
doub
N
402
N
sing
Y
403
N
doub
N
404
N
sing
Y
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
doub
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
US
J. Med. Chem.
JMCMAR
0151
1520-4804
60
5816
5825
10.1021/acs.jmedchem.7b00514
28653849
Structure-Based Design and Synthesis of Potent and Selective Matrix Metalloproteinase 13 Inhibitors.
2017
10.2210/pdb5uwl/pdb
pdb_00005uwl
100
1
CCD
2015-11-14
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
0.97918
1.0
24-ID-E
APS
0.97918
SYNCHROTRON
APS BEAMLINE 24-ID-E
CATALYTIC DOMAIN (UNP RESIDUES 104-274)
19366.578
Collagenase 3
3.4.24.-
2
man
polymer
65.409
ZINC ION
3
syn
non-polymer
40.078
CALCIUM ION
5
syn
non-polymer
480.579
(S)-N-(3-methyl-1-(methylamino)-1-oxobutan-2-yl)-5-(4-(((4-oxo-4,5,6,7-tetrahydro-3H-cyclopenta[d]pyrimidin-2-yl)thio)methyl)phenyl)furan-2-carboxamide
2
syn
non-polymer
18.015
water
62
nat
water
Matrix metalloproteinase-13,MMP-13
no
no
MYNVFPRTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPS
GLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGI
QSLYGPGDEDPN
MYNVFPRTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPS
GLLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGI
QSLYGPGDEDPN
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
172
MMP13
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
Plasmid
Biological sequence
PKA8H
1
4.47
72.49
VAPOR DIFFUSION, SITTING DROP
7
0.2 M sodium chloride, 0.1 M Tris pH 7, 1.0 M sodium citrate
277
citation
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
repository
Initial release
Database references
Data collection
Database references
Derived calculations
Refinement description
1
0
2017-07-12
1
1
2017-07-26
1
2
2023-10-04
_citation.journal_volume
_citation.page_first
_citation.page_last
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
N
RCSB
Y
RCSB
2017-02-21
REL
REL
ZN
ZINC ION
CA
CALCIUM ION
8OJ
(S)-N-(3-methyl-1-(methylamino)-1-oxobutan-2-yl)-5-(4-(((4-oxo-4,5,6,7-tetrahydro-3H-cyclopenta[d]pyrimidin-2-yl)thio)methyl)phenyl)furan-2-carboxamide
HOH
water
4L19
PDB
experimental model
ZN
301
2
ZN
ZN
301
A
ZN
302
2
ZN
ZN
302
A
CA
401
3
CA
CA
303
A
CA
402
3
CA
CA
304
A
CA
403
3
CA
CA
305
A
S17
501
4
8OJ
8OJ
306
A
ZN
301
2
ZN
ZN
301
B
CA
401
3
CA
CA
302
B
CA
402
3
CA
CA
303
B
S17
501
4
8OJ
8OJ
304
B
HOH
20
5
HOH
HOH
401
A
HOH
48
5
HOH
HOH
402
A
HOH
46
5
HOH
HOH
403
A
HOH
47
5
HOH
HOH
404
A
HOH
16
5
HOH
HOH
405
A
HOH
56
5
HOH
HOH
406
A
HOH
59
5
HOH
HOH
407
A
HOH
1
5
HOH
HOH
408
A
HOH
12
5
HOH
HOH
409
A
HOH
51
5
HOH
HOH
410
A
HOH
18
5
HOH
HOH
411
A
HOH
52
5
HOH
HOH
412
A
HOH
50
5
HOH
HOH
413
A
HOH
45
5
HOH
HOH
414
A
HOH
13
5
HOH
HOH
415
A
HOH
28
5
HOH
HOH
416
A
HOH
23
5
HOH
HOH
417
A
HOH
10
5
HOH
HOH
418
A
HOH
14
5
HOH
HOH
419
A
HOH
25
5
HOH
HOH
420
A
HOH
33
5
HOH
HOH
421
A
HOH
31
5
HOH
HOH
422
A
HOH
11
5
HOH
HOH
423
A
HOH
29
5
HOH
HOH
424
A
HOH
57
5
HOH
HOH
425
A
HOH
49
5
HOH
HOH
426
A
HOH
3
5
HOH
HOH
427
A
HOH
38
5
HOH
HOH
428
A
HOH
9
5
HOH
HOH
429
A
HOH
42
5
HOH
HOH
430
A
HOH
36
5
HOH
HOH
431
A
HOH
43
5
HOH
HOH
432
A
HOH
39
5
HOH
HOH
433
A
HOH
40
5
HOH
HOH
434
A
HOH
41
5
HOH
HOH
435
A
HOH
2
5
HOH
HOH
436
A
HOH
58
5
HOH
HOH
437
A
HOH
61
5
HOH
HOH
438
A
HOH
44
5
HOH
HOH
439
A
HOH
32
5
HOH
HOH
440
A
HOH
62
5
HOH
HOH
441
A
HOH
55
5
HOH
HOH
442
A
HOH
21
5
HOH
HOH
401
B
HOH
30
5
HOH
HOH
402
B
HOH
15
5
HOH
HOH
403
B
HOH
27
5
HOH
HOH
404
B
HOH
4
5
HOH
HOH
405
B
HOH
19
5
HOH
HOH
406
B
HOH
35
5
HOH
HOH
407
B
HOH
6
5
HOH
HOH
408
B
HOH
53
5
HOH
HOH
409
B
HOH
22
5
HOH
HOH
410
B
HOH
24
5
HOH
HOH
411
B
HOH
26
5
HOH
HOH
412
B
HOH
37
5
HOH
HOH
413
B
HOH
5
5
HOH
HOH
414
B
HOH
7
5
HOH
HOH
415
B
HOH
60
5
HOH
HOH
416
B
HOH
8
5
HOH
HOH
417
B
HOH
17
5
HOH
HOH
418
B
HOH
54
5
HOH
HOH
419
B
HOH
34
5
HOH
HOH
420
B
n
1
103
A
n
2
104
A
n
3
105
A
n
4
106
A
n
5
107
A
n
6
108
A
n
7
109
A
THR
110
n
8
THR
110
A
LEU
111
n
9
LEU
111
A
LYS
112
n
10
LYS
112
A
TRP
113
n
11
TRP
113
A
SER
114
n
12
SER
114
A
LYS
115
n
13
LYS
115
A
MET
116
n
14
MET
116
A
ASN
117
n
15
ASN
117
A
LEU
118
n
16
LEU
118
A
THR
119
n
17
THR
119
A
TYR
120
n
18
TYR
120
A
ARG
121
n
19
ARG
121
A
ILE
122
n
20
ILE
122
A
VAL
123
n
21
VAL
123
A
ASN
124
n
22
ASN
124
A
TYR
125
n
23
TYR
125
A
THR
126
n
24
THR
126
A
PRO
127
n
25
PRO
127
A
ASP
128
n
26
ASP
128
A
MET
129
n
27
MET
129
A
THR
130
n
28
THR
130
A
HIS
131
n
29
HIS
131
A
SER
132
n
30
SER
132
A
GLU
133
n
31
GLU
133
A
VAL
134
n
32
VAL
134
A
GLU
135
n
33
GLU
135
A
LYS
136
n
34
LYS
136
A
ALA
137
n
35
ALA
137
A
PHE
138
n
36
PHE
138
A
LYS
139
n
37
LYS
139
A
LYS
140
n
38
LYS
140
A
ALA
141
n
39
ALA
141
A
PHE
142
n
40
PHE
142
A
LYS
143
n
41
LYS
143
A
VAL
144
n
42
VAL
144
A
TRP
145
n
43
TRP
145
A
SER
146
n
44
SER
146
A
ASP
147
n
45
ASP
147
A
VAL
148
n
46
VAL
148
A
THR
149
n
47
THR
149
A
PRO
150
n
48
PRO
150
A
LEU
151
n
49
LEU
151
A
ASN
152
n
50
ASN
152
A
PHE
153
n
51
PHE
153
A
THR
154
n
52
THR
154
A
ARG
155
n
53
ARG
155
A
LEU
156
n
54
LEU
156
A
HIS
157
n
55
HIS
157
A
ASP
158
n
56
ASP
158
A
GLY
159
n
57
GLY
159
A
ILE
160
n
58
ILE
160
A
ALA
161
n
59
ALA
161
A
ASP
162
n
60
ASP
162
A
ILE
163
n
61
ILE
163
A
MET
164
n
62
MET
164
A
ILE
165
n
63
ILE
165
A
SER
166
n
64
SER
166
A
PHE
167
n
65
PHE
167
A
GLY
168
n
66
GLY
168
A
ILE
169
n
67
ILE
169
A
LYS
170
n
68
LYS
170
A
GLU
171
n
69
GLU
171
A
HIS
172
n
70
HIS
172
A
GLY
173
n
71
GLY
173
A
ASP
174
n
72
ASP
174
A
PHE
175
n
73
PHE
175
A
TYR
176
n
74
TYR
176
A
PRO
177
n
75
PRO
177
A
PHE
178
n
76
PHE
178
A
ASP
179
n
77
ASP
179
A
GLY
180
n
78
GLY
180
A
PRO
181
n
79
PRO
181
A
SER
182
n
80
SER
182
A
GLY
183
n
81
GLY
183
A
LEU
184
n
82
LEU
184
A
LEU
185
n
83
LEU
185
A
ALA
186
n
84
ALA
186
A
HIS
187
n
85
HIS
187
A
ALA
188
n
86
ALA
188
A
PHE
189
n
87
PHE
189
A
PRO
190
n
88
PRO
190
A
PRO
191
n
89
PRO
191
A
GLY
192
n
90
GLY
192
A
PRO
193
n
91
PRO
193
A
ASN
194
n
92
ASN
194
A
TYR
195
n
93
TYR
195
A
GLY
196
n
94
GLY
196
A
GLY
197
n
95
GLY
197
A
ASP
198
n
96
ASP
198
A
ALA
199
n
97
ALA
199
A
HIS
200
n
98
HIS
200
A
PHE
201
n
99
PHE
201
A
ASP
202
n
100
ASP
202
A
ASP
203
n
101
ASP
203
A
ASP
204
n
102
ASP
204
A
GLU
205
n
103
GLU
205
A
THR
206
n
104
THR
206
A
TRP
207
n
105
TRP
207
A
THR
208
n
106
THR
208
A
SER
209
n
107
SER
209
A
SER
210
n
108
SER
210
A
SER
211
n
109
SER
211
A
LYS
212
n
110
LYS
212
A
GLY
213
n
111
GLY
213
A
TYR
214
n
112
TYR
214
A
ASN
215
n
113
ASN
215
A
LEU
216
n
114
LEU
216
A
PHE
217
n
115
PHE
217
A
LEU
218
n
116
LEU
218
A
VAL
219
n
117
VAL
219
A
ALA
220
n
118
ALA
220
A
ALA
221
n
119
ALA
221
A
HIS
222
n
120
HIS
222
A
GLU
223
n
121
GLU
223
A
PHE
224
n
122
PHE
224
A
GLY
225
n
123
GLY
225
A
HIS
226
n
124
HIS
226
A
SER
227
n
125
SER
227
A
LEU
228
n
126
LEU
228
A
GLY
229
n
127
GLY
229
A
LEU
230
n
128
LEU
230
A
ASP
231
n
129
ASP
231
A
HIS
232
n
130
HIS
232
A
SER
233
n
131
SER
233
A
LYS
234
n
132
LYS
234
A
ASP
235
n
133
ASP
235
A
PRO
236
n
134
PRO
236
A
GLY
237
n
135
GLY
237
A
ALA
238
n
136
ALA
238
A
LEU
239
n
137
LEU
239
A
MET
240
n
138
MET
240
A
PHE
241
n
139
PHE
241
A
PRO
242
n
140
PRO
242
A
ILE
243
n
141
ILE
243
A
TYR
244
n
142
TYR
244
A
THR
245
n
143
THR
245
A
TYR
246
n
144
TYR
246
A
THR
247
n
145
THR
247
A
GLY
248
n
146
GLY
248
A
LYS
249
n
147
LYS
249
A
SER
250
n
148
SER
250
A
HIS
251
n
149
HIS
251
A
PHE
252
n
150
PHE
252
A
MET
253
n
151
MET
253
A
LEU
254
n
152
LEU
254
A
PRO
255
n
153
PRO
255
A
ASP
256
n
154
ASP
256
A
ASP
257
n
155
ASP
257
A
ASP
258
n
156
ASP
258
A
VAL
259
n
157
VAL
259
A
GLN
260
n
158
GLN
260
A
GLY
261
n
159
GLY
261
A
ILE
262
n
160
ILE
262
A
GLN
263
n
161
GLN
263
A
SER
264
n
162
SER
264
A
LEU
265
n
163
LEU
265
A
TYR
266
n
164
TYR
266
A
GLY
267
n
165
GLY
267
A
PRO
268
n
166
PRO
268
A
GLY
269
n
167
GLY
269
A
n
168
270
A
n
169
271
A
n
170
272
A
n
171
273
A
n
172
274
A
n
1
103
B
n
2
104
B
n
3
105
B
n
4
106
B
n
5
107
B
PRO
108
n
6
PRO
108
B
ARG
109
n
7
ARG
109
B
THR
110
n
8
THR
110
B
LEU
111
n
9
LEU
111
B
LYS
112
n
10
LYS
112
B
TRP
113
n
11
TRP
113
B
SER
114
n
12
SER
114
B
LYS
115
n
13
LYS
115
B
MET
116
n
14
MET
116
B
ASN
117
n
15
ASN
117
B
LEU
118
n
16
LEU
118
B
THR
119
n
17
THR
119
B
TYR
120
n
18
TYR
120
B
ARG
121
n
19
ARG
121
B
ILE
122
n
20
ILE
122
B
VAL
123
n
21
VAL
123
B
ASN
124
n
22
ASN
124
B
TYR
125
n
23
TYR
125
B
THR
126
n
24
THR
126
B
PRO
127
n
25
PRO
127
B
ASP
128
n
26
ASP
128
B
MET
129
n
27
MET
129
B
THR
130
n
28
THR
130
B
HIS
131
n
29
HIS
131
B
SER
132
n
30
SER
132
B
GLU
133
n
31
GLU
133
B
VAL
134
n
32
VAL
134
B
GLU
135
n
33
GLU
135
B
LYS
136
n
34
LYS
136
B
ALA
137
n
35
ALA
137
B
PHE
138
n
36
PHE
138
B
LYS
139
n
37
LYS
139
B
LYS
140
n
38
LYS
140
B
ALA
141
n
39
ALA
141
B
PHE
142
n
40
PHE
142
B
LYS
143
n
41
LYS
143
B
VAL
144
n
42
VAL
144
B
TRP
145
n
43
TRP
145
B
SER
146
n
44
SER
146
B
ASP
147
n
45
ASP
147
B
VAL
148
n
46
VAL
148
B
THR
149
n
47
THR
149
B
PRO
150
n
48
PRO
150
B
LEU
151
n
49
LEU
151
B
ASN
152
n
50
ASN
152
B
PHE
153
n
51
PHE
153
B
THR
154
n
52
THR
154
B
ARG
155
n
53
ARG
155
B
LEU
156
n
54
LEU
156
B
HIS
157
n
55
HIS
157
B
ASP
158
n
56
ASP
158
B
GLY
159
n
57
GLY
159
B
ILE
160
n
58
ILE
160
B
ALA
161
n
59
ALA
161
B
ASP
162
n
60
ASP
162
B
ILE
163
n
61
ILE
163
B
MET
164
n
62
MET
164
B
ILE
165
n
63
ILE
165
B
SER
166
n
64
SER
166
B
PHE
167
n
65
PHE
167
B
GLY
168
n
66
GLY
168
B
ILE
169
n
67
ILE
169
B
LYS
170
n
68
LYS
170
B
GLU
171
n
69
GLU
171
B
HIS
172
n
70
HIS
172
B
GLY
173
n
71
GLY
173
B
ASP
174
n
72
ASP
174
B
PHE
175
n
73
PHE
175
B
TYR
176
n
74
TYR
176
B
PRO
177
n
75
PRO
177
B
PHE
178
n
76
PHE
178
B
ASP
179
n
77
ASP
179
B
GLY
180
n
78
GLY
180
B
PRO
181
n
79
PRO
181
B
SER
182
n
80
SER
182
B
GLY
183
n
81
GLY
183
B
LEU
184
n
82
LEU
184
B
LEU
185
n
83
LEU
185
B
ALA
186
n
84
ALA
186
B
HIS
187
n
85
HIS
187
B
ALA
188
n
86
ALA
188
B
PHE
189
n
87
PHE
189
B
PRO
190
n
88
PRO
190
B
PRO
191
n
89
PRO
191
B
GLY
192
n
90
GLY
192
B
PRO
193
n
91
PRO
193
B
ASN
194
n
92
ASN
194
B
TYR
195
n
93
TYR
195
B
GLY
196
n
94
GLY
196
B
GLY
197
n
95
GLY
197
B
ASP
198
n
96
ASP
198
B
ALA
199
n
97
ALA
199
B
HIS
200
n
98
HIS
200
B
PHE
201
n
99
PHE
201
B
ASP
202
n
100
ASP
202
B
ASP
203
n
101
ASP
203
B
ASP
204
n
102
ASP
204
B
GLU
205
n
103
GLU
205
B
THR
206
n
104
THR
206
B
TRP
207
n
105
TRP
207
B
THR
208
n
106
THR
208
B
SER
209
n
107
SER
209
B
SER
210
n
108
SER
210
B
SER
211
n
109
SER
211
B
LYS
212
n
110
LYS
212
B
GLY
213
n
111
GLY
213
B
TYR
214
n
112
TYR
214
B
ASN
215
n
113
ASN
215
B
LEU
216
n
114
LEU
216
B
PHE
217
n
115
PHE
217
B
LEU
218
n
116
LEU
218
B
VAL
219
n
117
VAL
219
B
ALA
220
n
118
ALA
220
B
ALA
221
n
119
ALA
221
B
HIS
222
n
120
HIS
222
B
GLU
223
n
121
GLU
223
B
PHE
224
n
122
PHE
224
B
GLY
225
n
123
GLY
225
B
HIS
226
n
124
HIS
226
B
SER
227
n
125
SER
227
B
LEU
228
n
126
LEU
228
B
GLY
229
n
127
GLY
229
B
LEU
230
n
128
LEU
230
B
ASP
231
n
129
ASP
231
B
HIS
232
n
130
HIS
232
B
SER
233
n
131
SER
233
B
LYS
234
n
132
LYS
234
B
ASP
235
n
133
ASP
235
B
PRO
236
n
134
PRO
236
B
GLY
237
n
135
GLY
237
B
ALA
238
n
136
ALA
238
B
LEU
239
n
137
LEU
239
B
MET
240
n
138
MET
240
B
PHE
241
n
139
PHE
241
B
PRO
242
n
140
PRO
242
B
ILE
243
n
141
ILE
243
B
TYR
244
n
142
TYR
244
B
THR
245
n
143
THR
245
B
TYR
246
n
144
TYR
246
B
THR
247
n
145
THR
247
B
GLY
248
n
146
GLY
248
B
LYS
249
n
147
LYS
249
B
SER
250
n
148
SER
250
B
HIS
251
n
149
HIS
251
B
PHE
252
n
150
PHE
252
B
MET
253
n
151
MET
253
B
LEU
254
n
152
LEU
254
B
PRO
255
n
153
PRO
255
B
ASP
256
n
154
ASP
256
B
ASP
257
n
155
ASP
257
B
ASP
258
n
156
ASP
258
B
VAL
259
n
157
VAL
259
B
GLN
260
n
158
GLN
260
B
GLY
261
n
159
GLY
261
B
ILE
262
n
160
ILE
262
B
GLN
263
n
161
GLN
263
B
SER
264
n
162
SER
264
B
LEU
265
n
163
LEU
265
B
TYR
266
n
164
TYR
266
B
GLY
267
n
165
GLY
267
B
PRO
268
n
166
PRO
268
B
GLY
269
n
167
GLY
269
B
n
168
270
B
n
169
271
B
n
170
272
B
n
171
273
B
n
172
274
B
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
A
ASP
128
A
OD1
ASP
26
1_555
A
CA
304
F
CA
CA
1_555
A
ASP
128
A
OD2
ASP
26
1_555
44.4
A
ASP
128
A
OD1
ASP
26
1_555
A
CA
304
F
CA
CA
1_555
A
ASP
203
A
O
ASP
101
1_555
172.4
A
ASP
128
A
OD2
ASP
26
1_555
A
CA
304
F
CA
CA
1_555
A
ASP
203
A
O
ASP
101
1_555
142.5
A
ASP
128
A
OD1
ASP
26
1_555
A
CA
304
F
CA
CA
1_555
A
ASP
203
A
OD1
ASP
101
1_555
114.5
A
ASP
128
A
OD2
ASP
26
1_555
A
CA
304
F
CA
CA
1_555
A
ASP
203
A
OD1
ASP
101
1_555
92.4
A
ASP
203
A
O
ASP
101
1_555
A
CA
304
F
CA
CA
1_555
A
ASP
203
A
OD1
ASP
101
1_555
65.8
A
ASP
128
A
OD1
ASP
26
1_555
A
CA
304
F
CA
CA
1_555
A
GLU
205
A
O
GLU
103
1_555
114.9
A
ASP
128
A
OD2
ASP
26
1_555
A
CA
304
F
CA
CA
1_555
A
GLU
205
A
O
GLU
103
1_555
80.6
A
ASP
203
A
O
ASP
101
1_555
A
CA
304
F
CA
CA
1_555
A
GLU
205
A
O
GLU
103
1_555
72.2
A
ASP
203
A
OD1
ASP
101
1_555
A
CA
304
F
CA
CA
1_555
A
GLU
205
A
O
GLU
103
1_555
95.7
A
ASP
162
A
O
ASP
60
1_555
A
CA
305
G
CA
CA
1_555
A
ASN
194
A
O
ASN
92
1_555
175.7
A
ASP
162
A
O
ASP
60
1_555
A
CA
305
G
CA
CA
1_555
A
GLY
196
A
O
GLY
94
1_555
98.9
A
ASN
194
A
O
ASN
92
1_555
A
CA
305
G
CA
CA
1_555
A
GLY
196
A
O
GLY
94
1_555
85.2
A
ASP
162
A
O
ASP
60
1_555
A
CA
305
G
CA
CA
1_555
A
ASP
198
A
OD1
ASP
96
1_555
98.2
A
ASN
194
A
O
ASN
92
1_555
A
CA
305
G
CA
CA
1_555
A
ASP
198
A
OD1
ASP
96
1_555
82.6
A
GLY
196
A
O
GLY
94
1_555
A
CA
305
G
CA
CA
1_555
A
ASP
198
A
OD1
ASP
96
1_555
95.7
A
ASP
162
A
O
ASP
60
1_555
A
CA
305
G
CA
CA
1_555
A
HOH
406
M
O
HOH
1_555
98.4
A
ASN
194
A
O
ASN
92
1_555
A
CA
305
G
CA
CA
1_555
A
HOH
406
M
O
HOH
1_555
77.5
A
GLY
196
A
O
GLY
94
1_555
A
CA
305
G
CA
CA
1_555
A
HOH
406
M
O
HOH
1_555
162.5
A
ASP
198
A
OD1
ASP
96
1_555
A
CA
305
G
CA
CA
1_555
A
HOH
406
M
O
HOH
1_555
84.4
A
HIS
172
A
NE2
HIS
70
1_555
A
ZN
302
D
ZN
ZN
1_555
A
ASP
174
A
OD2
ASP
72
1_555
120.4
A
HIS
172
A
NE2
HIS
70
1_555
A
ZN
302
D
ZN
ZN
1_555
A
HIS
187
A
NE2
HIS
85
1_555
113.1
A
ASP
174
A
OD2
ASP
72
1_555
A
ZN
302
D
ZN
ZN
1_555
A
HIS
187
A
NE2
HIS
85
1_555
101.3
A
HIS
172
A
NE2
HIS
70
1_555
A
ZN
302
D
ZN
ZN
1_555
A
HIS
200
A
ND1
HIS
98
1_555
112.5
A
ASP
174
A
OD2
ASP
72
1_555
A
ZN
302
D
ZN
ZN
1_555
A
HIS
200
A
ND1
HIS
98
1_555
98.1
A
HIS
187
A
NE2
HIS
85
1_555
A
ZN
302
D
ZN
ZN
1_555
A
HIS
200
A
ND1
HIS
98
1_555
109.9
A
ASP
179
A
OD1
ASP
77
1_555
A
CA
303
E
CA
CA
1_555
A
GLY
180
A
O
GLY
78
1_555
87.3
A
ASP
179
A
OD1
ASP
77
1_555
A
CA
303
E
CA
CA
1_555
A
SER
182
A
O
SER
80
1_555
81.8
A
GLY
180
A
O
GLY
78
1_555
A
CA
303
E
CA
CA
1_555
A
SER
182
A
O
SER
80
1_555
76.9
A
ASP
179
A
OD1
ASP
77
1_555
A
CA
303
E
CA
CA
1_555
A
LEU
184
A
O
LEU
82
1_555
85.5
A
GLY
180
A
O
GLY
78
1_555
A
CA
303
E
CA
CA
1_555
A
LEU
184
A
O
LEU
82
1_555
168.2
A
SER
182
A
O
SER
80
1_555
A
CA
303
E
CA
CA
1_555
A
LEU
184
A
O
LEU
82
1_555
92.7
A
ASP
179
A
OD1
ASP
77
1_555
A
CA
303
E
CA
CA
1_555
A
ASP
202
A
OD2
ASP
100
1_555
96.2
A
GLY
180
A
O
GLY
78
1_555
A
CA
303
E
CA
CA
1_555
A
ASP
202
A
OD2
ASP
100
1_555
92.8
A
SER
182
A
O
SER
80
1_555
A
CA
303
E
CA
CA
1_555
A
ASP
202
A
OD2
ASP
100
1_555
169.6
A
LEU
184
A
O
LEU
82
1_555
A
CA
303
E
CA
CA
1_555
A
ASP
202
A
OD2
ASP
100
1_555
97.3
A
ASP
179
A
OD1
ASP
77
1_555
A
CA
303
E
CA
CA
1_555
A
GLU
205
A
OE2
GLU
103
1_555
161.5
A
GLY
180
A
O
GLY
78
1_555
A
CA
303
E
CA
CA
1_555
A
GLU
205
A
OE2
GLU
103
1_555
90.5
A
SER
182
A
O
SER
80
1_555
A
CA
303
E
CA
CA
1_555
A
GLU
205
A
OE2
GLU
103
1_555
79.8
A
LEU
184
A
O
LEU
82
1_555
A
CA
303
E
CA
CA
1_555
A
GLU
205
A
OE2
GLU
103
1_555
93.3
A
ASP
202
A
OD2
ASP
100
1_555
A
CA
303
E
CA
CA
1_555
A
GLU
205
A
OE2
GLU
103
1_555
102.3
A
HIS
222
A
NE2
HIS
120
1_555
A
ZN
301
C
ZN
ZN
1_555
A
HIS
226
A
NE2
HIS
124
1_555
101.7
A
HIS
222
A
NE2
HIS
120
1_555
A
ZN
301
C
ZN
ZN
1_555
A
HIS
232
A
NE2
HIS
130
1_555
117.2
A
HIS
226
A
NE2
HIS
124
1_555
A
ZN
301
C
ZN
ZN
1_555
A
HIS
232
A
NE2
HIS
130
1_555
89.0
B
ASP
128
B
OD1
ASP
26
1_555
B
CA
302
J
CA
CA
1_555
B
ASP
128
B
OD2
ASP
26
1_555
43.6
B
ASP
128
B
OD1
ASP
26
1_555
B
CA
302
J
CA
CA
1_555
B
ASP
203
B
O
ASP
101
1_555
155.6
B
ASP
128
B
OD2
ASP
26
1_555
B
CA
302
J
CA
CA
1_555
B
ASP
203
B
O
ASP
101
1_555
160.8
B
ASP
128
B
OD1
ASP
26
1_555
B
CA
302
J
CA
CA
1_555
B
ASP
203
B
OD1
ASP
101
1_555
99.1
B
ASP
128
B
OD2
ASP
26
1_555
B
CA
302
J
CA
CA
1_555
B
ASP
203
B
OD1
ASP
101
1_555
96.4
B
ASP
203
B
O
ASP
101
1_555
B
CA
302
J
CA
CA
1_555
B
ASP
203
B
OD1
ASP
101
1_555
81.7
B
ASP
128
B
OD1
ASP
26
1_555
B
CA
302
J
CA
CA
1_555
B
GLU
205
B
O
GLU
103
1_555
128.3
B
ASP
128
B
OD2
ASP
26
1_555
B
CA
302
J
CA
CA
1_555
B
GLU
205
B
O
GLU
103
1_555
86.5
B
ASP
203
B
O
ASP
101
1_555
B
CA
302
J
CA
CA
1_555
B
GLU
205
B
O
GLU
103
1_555
75.0
B
ASP
203
B
OD1
ASP
101
1_555
B
CA
302
J
CA
CA
1_555
B
GLU
205
B
O
GLU
103
1_555
99.2
B
ASP
162
B
O
ASP
60
1_555
B
CA
303
K
CA
CA
1_555
B
ASN
194
B
O
ASN
92
1_555
147.2
B
ASP
162
B
O
ASP
60
1_555
B
CA
303
K
CA
CA
1_555
B
GLY
196
B
O
GLY
94
1_555
97.9
B
ASN
194
B
O
ASN
92
1_555
B
CA
303
K
CA
CA
1_555
B
GLY
196
B
O
GLY
94
1_555
102.9
B
ASP
162
B
O
ASP
60
1_555
B
CA
303
K
CA
CA
1_555
B
ASP
198
B
OD1
ASP
96
1_555
101.1
B
ASN
194
B
O
ASN
92
1_555
B
CA
303
K
CA
CA
1_555
B
ASP
198
B
OD1
ASP
96
1_555
102.8
B
GLY
196
B
O
GLY
94
1_555
B
CA
303
K
CA
CA
1_555
B
ASP
198
B
OD1
ASP
96
1_555
93.3
B
ASP
162
B
O
ASP
60
1_555
B
CA
303
K
CA
CA
1_555
B
HOH
407
N
O
HOH
4_655
95.8
B
ASN
194
B
O
ASN
92
1_555
B
CA
303
K
CA
CA
1_555
B
HOH
407
N
O
HOH
4_655
63.2
B
GLY
196
B
O
GLY
94
1_555
B
CA
303
K
CA
CA
1_555
B
HOH
407
N
O
HOH
4_655
165.8
B
ASP
198
B
OD1
ASP
96
1_555
B
CA
303
K
CA
CA
1_555
B
HOH
407
N
O
HOH
4_655
87.7
B
HIS
222
B
NE2
HIS
120
1_555
B
ZN
301
I
ZN
ZN
1_555
B
HIS
226
B
NE2
HIS
124
1_555
98.3
B
HIS
222
B
NE2
HIS
120
1_555
B
ZN
301
I
ZN
ZN
1_555
B
HIS
232
B
NE2
HIS
130
1_555
100.8
B
HIS
226
B
NE2
HIS
124
1_555
B
ZN
301
I
ZN
ZN
1_555
B
HIS
232
B
NE2
HIS
130
1_555
90.6
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ASN
152
A
O
ASN
50
A
N
LEU
118
A
N
LEU
16
A
N
THR
119
A
N
THR
17
A
O
ILE
163
A
O
ILE
61
A
N
GLY
168
A
N
GLY
66
A
O
PHE
201
A
O
PHE
99
A
O
HIS
200
A
O
HIS
98
A
N
HIS
187
A
N
HIS
85
A
N
THR
208
A
N
THR
106
A
O
TYR
214
A
O
TYR
112
B
O
THR
154
B
O
THR
52
B
N
TYR
120
B
N
TYR
18
B
N
ARG
121
B
N
ARG
19
B
O
ILE
165
B
O
ILE
63
B
N
SER
166
B
N
SER
64
B
O
ALA
199
B
O
ALA
97
B
O
HIS
200
B
O
HIS
98
B
N
HIS
187
B
N
HIS
85
B
N
THR
208
B
N
THR
106
B
O
TYR
214
B
O
TYR
112
1
A
MET
103
A
MET
1
1
Y
1
A
TYR
104
A
TYR
2
1
Y
1
A
ASN
105
A
ASN
3
1
Y
1
A
VAL
106
A
VAL
4
1
Y
1
A
PHE
107
A
PHE
5
1
Y
1
A
PRO
108
A
PRO
6
1
Y
1
A
ARG
109
A
ARG
7
1
Y
1
A
ASP
270
A
ASP
168
1
Y
1
A
GLU
271
A
GLU
169
1
Y
1
A
ASP
272
A
ASP
170
1
Y
1
A
PRO
273
A
PRO
171
1
Y
1
A
ASN
274
A
ASN
172
1
Y
1
B
MET
103
B
MET
1
1
Y
1
B
TYR
104
B
TYR
2
1
Y
1
B
ASN
105
B
ASN
3
1
Y
1
B
VAL
106
B
VAL
4
1
Y
1
B
PHE
107
B
PHE
5
1
Y
1
B
ASP
270
B
ASP
168
1
Y
1
B
GLU
271
B
GLU
169
1
Y
1
B
ASP
272
B
ASP
170
1
Y
1
B
PRO
273
B
PRO
171
1
Y
1
B
ASN
274
B
ASN
172
1
Y
1
A
LYS
170
35.47
-133.17
1
A
HIS
172
-158.93
19.97
1
A
TYR
176
-112.46
76.60
1
A
SER
182
63.17
-161.44
1
A
ALA
186
178.56
170.98
1
A
ASN
194
39.24
-108.79
1
A
SER
210
-133.39
-126.38
1
B
MET
116
-140.23
-4.38
1
B
TYR
176
-35.08
132.95
1
B
ASN
194
47.03
-111.77
1
B
SER
210
-128.73
-100.02
1
B
SER
250
-99.65
-65.28
0.2395
0.1988
0.2023
2.550
60.07
1999
23266
8.59
98.21
0.36
1
THROUGHOUT
1.35
MOLECULAR REPLACEMENT
25.76
0.90
1.11
4L19
2.550
60.07
62
2686
76
0
2548
0.010
2713
1.158
3689
17.171
954
0.052
366
0.008
475
0.3630
0.3127
2.6138
138
1476
99.00
0.3667
0.3073
2.6845
142
1507
99.00
0.3398
0.2798
2.7635
141
1493
99.00
0.3023
0.2733
2.8527
140
1493
99.00
0.3348
0.2599
2.9547
142
1518
99.00
0.3084
0.2671
3.0730
141
1497
99.00
0.3467
0.2576
3.2128
142
1511
99.00
0.2216
0.2211
3.3822
142
1511
99.00
0.2352
0.2092
3.5941
143
1516
99.00
0.2336
0.1724
3.8715
143
1527
99.00
0.1840
0.1586
4.2610
144
1532
99.00
0.1910
0.1462
4.8774
146
1540
98.00
0.1884
0.1725
6.1440
145
1553
97.00
0.2154
0.1685
60.0897
150
1593
93.00
50.1
2.55
60.07
5UWL
23277
0.047
0.124
1
12.1
7.3
99.0
2.55
2.69
2.1
3333
0.369
0.967
1
7.4
99.1
refinement
PHENIX
(1.10_2155: ???)
data reduction
XDS
data scaling
XDS
phasing
PHASER
N
Matrix metalloproteinase-13 complexed with selective inhibitor compound (S)-17a
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
5
N
N
A
THR
130
A
THR
28
HELX_P
A
ASP
147
A
ASP
45
1
AA1
18
A
LEU
216
A
LEU
114
HELX_P
A
LEU
228
A
LEU
126
1
AA2
13
A
PRO
255
A
PRO
153
HELX_P
A
GLY
267
A
GLY
165
1
AA3
13
B
THR
130
B
THR
28
HELX_P
B
ASP
147
B
ASP
45
1
AA4
18
B
ILE
169
B
ILE
67
HELX_P
B
GLY
173
B
GLY
71
5
AA5
5
B
LEU
216
B
LEU
114
HELX_P
B
LEU
228
B
LEU
126
1
AA6
13
B
PRO
255
B
PRO
153
HELX_P
B
GLY
267
B
GLY
165
1
AA7
13
metalc
3.136
A
ASP
128
A
OD1
ASP
26
1_555
A
CA
304
F
CA
CA
1_555
metalc
2.285
A
ASP
128
A
OD2
ASP
26
1_555
A
CA
304
F
CA
CA
1_555
metalc
2.050
A
ASP
162
A
O
ASP
60
1_555
A
CA
305
G
CA
CA
1_555
metalc
1.896
A
HIS
172
A
NE2
HIS
70
1_555
A
ZN
302
D
ZN
ZN
1_555
metalc
1.942
A
ASP
174
A
OD2
ASP
72
1_555
A
ZN
302
D
ZN
ZN
1_555
metalc
2.436
A
ASP
179
A
OD1
ASP
77
1_555
A
CA
303
E
CA
CA
1_555
metalc
2.254
A
GLY
180
A
O
GLY
78
1_555
A
CA
303
E
CA
CA
1_555
metalc
2.452
A
SER
182
A
O
SER
80
1_555
A
CA
303
E
CA
CA
1_555
metalc
2.223
A
LEU
184
A
O
LEU
82
1_555
A
CA
303
E
CA
CA
1_555
metalc
2.227
A
HIS
187
A
NE2
HIS
85
1_555
A
ZN
302
D
ZN
ZN
1_555
metalc
2.322
A
ASN
194
A
O
ASN
92
1_555
A
CA
305
G
CA
CA
1_555
metalc
2.299
A
GLY
196
A
O
GLY
94
1_555
A
CA
305
G
CA
CA
1_555
metalc
2.810
A
ASP
198
A
OD1
ASP
96
1_555
A
CA
305
G
CA
CA
1_555
metalc
1.939
A
HIS
200
A
ND1
HIS
98
1_555
A
ZN
302
D
ZN
ZN
1_555
metalc
2.328
A
ASP
202
A
OD2
ASP
100
1_555
A
CA
303
E
CA
CA
1_555
metalc
2.461
A
ASP
203
A
O
ASP
101
1_555
A
CA
304
F
CA
CA
1_555
metalc
2.708
A
ASP
203
A
OD1
ASP
101
1_555
A
CA
304
F
CA
CA
1_555
metalc
2.258
A
GLU
205
A
OE2
GLU
103
1_555
A
CA
303
E
CA
CA
1_555
metalc
2.557
A
GLU
205
A
O
GLU
103
1_555
A
CA
304
F
CA
CA
1_555
metalc
2.046
A
HIS
222
A
NE2
HIS
120
1_555
A
ZN
301
C
ZN
ZN
1_555
metalc
2.138
A
HIS
226
A
NE2
HIS
124
1_555
A
ZN
301
C
ZN
ZN
1_555
metalc
1.945
A
HIS
232
A
NE2
HIS
130
1_555
A
ZN
301
C
ZN
ZN
1_555
metalc
2.753
A
CA
305
G
CA
CA
1_555
A
HOH
406
M
O
HOH
1_555
metalc
3.181
B
ASP
128
B
OD1
ASP
26
1_555
B
CA
302
J
CA
CA
1_555
metalc
2.450
B
ASP
128
B
OD2
ASP
26
1_555
B
CA
302
J
CA
CA
1_555
metalc
2.271
B
ASP
162
B
O
ASP
60
1_555
B
CA
303
K
CA
CA
1_555
metalc
2.671
B
ASN
194
B
O
ASN
92
1_555
B
CA
303
K
CA
CA
1_555
metalc
2.192
B
GLY
196
B
O
GLY
94
1_555
B
CA
303
K
CA
CA
1_555
metalc
2.730
B
ASP
198
B
OD1
ASP
96
1_555
B
CA
303
K
CA
CA
1_555
metalc
2.342
B
ASP
203
B
O
ASP
101
1_555
B
CA
302
J
CA
CA
1_555
metalc
2.581
B
ASP
203
B
OD1
ASP
101
1_555
B
CA
302
J
CA
CA
1_555
metalc
2.413
B
GLU
205
B
O
GLU
103
1_555
B
CA
302
J
CA
CA
1_555
metalc
2.165
B
HIS
222
B
NE2
HIS
120
1_555
B
ZN
301
I
ZN
ZN
1_555
metalc
2.214
B
HIS
226
B
NE2
HIS
124
1_555
B
ZN
301
I
ZN
ZN
1_555
metalc
1.902
B
HIS
232
B
NE2
HIS
130
1_555
B
ZN
301
I
ZN
ZN
1_555
metalc
2.543
B
CA
303
K
CA
CA
1_555
B
HOH
407
N
O
HOH
4_655
hydrolase/hydrolase inhibitor
Metalloproteinase, collagenase, MMP-13, hydrolase, hydrolase-hydrolase inhibitor complex
B
TYR
176
B
TYR
74
1
B
PRO
177
B
PRO
75
3.59
MMP13_HUMAN
UNP
1
104
P45452
YNVFPRTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSG
LLAHAFPPGPNYGGDAHFDDDETWTSSSKGYNLFLVAAHEFGHSLGLDHSKDPGALMFPIYTYTGKSHFMLPDDDVQGIQ
SLYGPGDEDPN
104
274
5UWL
104
274
P45452
A
1
2
172
104
274
5UWL
104
274
P45452
B
1
2
172
1
initiating methionine
MET
103
5UWL
A
P45452
UNP
1
2
initiating methionine
MET
103
5UWL
B
P45452
UNP
1
5
2
5
2
parallel
parallel
parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
parallel
A
ASN
152
A
ASN
50
A
ARG
155
A
ARG
53
A
ASN
117
A
ASN
15
A
ILE
122
A
ILE
20
A
ILE
163
A
ILE
61
A
GLY
168
A
GLY
66
A
ALA
199
A
ALA
97
A
ASP
202
A
ASP
100
A
ALA
186
A
ALA
84
A
ALA
188
A
ALA
86
A
TRP
207
A
TRP
105
A
THR
208
A
THR
106
A
TYR
214
A
TYR
112
A
ASN
215
A
ASN
113
B
ASN
152
B
ASN
50
B
LEU
156
B
LEU
54
B
ASN
117
B
ASN
15
B
ILE
122
B
ILE
20
B
ILE
163
B
ILE
61
B
GLY
168
B
GLY
66
B
ALA
199
B
ALA
97
B
ASP
202
B
ASP
100
B
ALA
186
B
ALA
84
B
ALA
188
B
ALA
86
B
TRP
207
B
TRP
105
B
THR
208
B
THR
106
B
TYR
214
B
TYR
112
B
ASN
215
B
ASN
113
binding site for residue ZN A 301
A
ZN
301
Software
3
binding site for residue ZN A 302
A
ZN
302
Software
4
binding site for residue CA A 303
A
CA
303
Software
6
binding site for residue CA A 304
A
CA
304
Software
3
binding site for residue CA A 305
A
CA
305
Software
5
binding site for residue 8OJ A 306
A
8OJ
306
Software
16
binding site for residue ZN B 301
B
ZN
301
Software
3
binding site for residue CA B 302
B
CA
302
Software
3
binding site for residue CA B 303
B
CA
303
Software
6
binding site for residue 8OJ B 304
B
8OJ
304
Software
12
A
HIS
222
A
HIS
120
3
1_555
A
HIS
226
A
HIS
124
3
1_555
A
HIS
232
A
HIS
130
3
1_555
A
HIS
172
A
HIS
70
4
1_555
A
ASP
174
A
ASP
72
4
1_555
A
HIS
187
A
HIS
85
4
1_555
A
HIS
200
A
HIS
98
4
1_555
A
ASP
179
A
ASP
77
6
1_555
A
GLY
180
A
GLY
78
6
1_555
A
SER
182
A
SER
80
6
1_555
A
LEU
184
A
LEU
82
6
1_555
A
ASP
202
A
ASP
100
6
1_555
A
GLU
205
A
GLU
103
6
1_555
A
ASP
128
A
ASP
26
3
1_555
A
ASP
203
A
ASP
101
3
1_555
A
GLU
205
A
GLU
103
3
1_555
A
ASP
162
A
ASP
60
5
1_555
A
ASN
194
A
ASN
92
5
1_555
A
GLY
196
A
GLY
94
5
1_555
A
ASP
198
A
ASP
96
5
1_555
A
HOH
406
M
HOH
5
1_555
A
GLY
183
A
GLY
81
16
1_555
A
LEU
184
A
LEU
82
16
1_555
A
LEU
185
A
LEU
83
16
1_555
A
TYR
214
A
TYR
112
16
1_555
A
LEU
218
A
LEU
116
16
1_555
A
HIS
222
A
HIS
120
16
1_555
A
GLU
223
A
GLU
121
16
1_555
A
LEU
239
A
LEU
137
16
1_555
A
PHE
241
A
PHE
139
16
1_555
A
PRO
242
A
PRO
140
16
1_555
A
ILE
243
A
ILE
141
16
1_555
A
TYR
244
A
TYR
142
16
1_555
A
THR
245
A
THR
143
16
1_555
A
THR
247
A
THR
145
16
1_555
A
PRO
255
A
PRO
153
16
1_555
A
HOH
418
M
HOH
16
1_555
B
HIS
222
B
HIS
120
3
1_555
B
HIS
226
B
HIS
124
3
1_555
B
HIS
232
B
HIS
130
3
1_555
B
ASP
128
B
ASP
26
3
1_555
B
ASP
203
B
ASP
101
3
1_555
B
GLU
205
B
GLU
103
3
1_555
B
ASP
162
B
ASP
60
6
1_555
B
ASN
194
B
ASN
92
6
1_555
B
TYR
195
B
TYR
93
6
1_555
B
GLY
196
B
GLY
94
6
1_555
B
ASP
198
B
ASP
96
6
1_555
B
HOH
407
N
HOH
6
4_655
B
LEU
184
B
LEU
82
12
1_555
B
LEU
185
B
LEU
83
12
1_555
B
TYR
214
B
TYR
112
12
1_555
B
LEU
218
B
LEU
116
12
1_555
B
HIS
222
B
HIS
120
12
1_555
B
GLU
223
B
GLU
121
12
1_555
B
LEU
239
B
LEU
137
12
1_555
B
PHE
241
B
PHE
139
12
1_555
B
PRO
242
B
PRO
140
12
1_555
B
ILE
243
B
ILE
141
12
1_555
B
TYR
244
B
TYR
142
12
1_555
B
THR
245
B
THR
143
12
1_555
181
P 64 2 2