data_5V5C # _entry.id 5V5C # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5V5C pdb_00005v5c 10.2210/pdb5v5c/pdb WWPDB D_1000226898 ? ? EMDB EMD-8635 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2018-02-07 2 'Structure model' 1 1 2018-02-14 3 'Structure model' 1 2 2018-06-06 4 'Structure model' 1 3 2019-12-18 5 'Structure model' 1 4 2024-03-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Author supporting evidence' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Author supporting evidence' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_audit_support 2 3 'Structure model' software 3 4 'Structure model' pdbx_audit_support 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond 6 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_audit_support.funding_organization' 2 4 'Structure model' '_pdbx_audit_support.funding_organization' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5V5C _pdbx_database_status.recvd_initial_deposition_date 2017-03-14 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.details _pdbx_database_related.db_id _pdbx_database_related.content_type EMDB 'VQIINK, Structure of the amyloid-spine from microtubule associated protein tau Repeat 2' EMD-8635 'associated EM volume' EMDB 'KVQIINKKLD, Structure of the amyloid-spine from microtubule associated protein tau Repeat 2' EMD-8634 'other EM volume' PDB . 5V5B unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Seidler, P.M.' 1 ? 'Sawaya, M.R.' 2 0000-0003-0874-9043 'Rodriguez, J.A.' 3 ? 'Eisenberg, D.S.' 4 ? 'Cascio, D.' 5 0000-0002-3877-6803 'Boyer, D.R.' 6 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Nat Chem' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 1755-4349 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 10 _citation.language ? _citation.page_first 170 _citation.page_last 176 _citation.title 'Structure-based inhibitors of tau aggregation.' _citation.year 2018 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1038/nchem.2889 _citation.pdbx_database_id_PubMed 29359764 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Seidler, P.M.' 1 ? primary 'Boyer, D.R.' 2 ? primary 'Rodriguez, J.A.' 3 ? primary 'Sawaya, M.R.' 4 ? primary 'Cascio, D.' 5 ? primary 'Murray, K.' 6 ? primary 'Gonen, T.' 7 ? primary 'Eisenberg, D.S.' 8 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'Microtubule-associated protein tau' _entity.formula_weight 714.873 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'Repeat 2 peptide (UNP residues 592-597)' _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Neurofibrillary tangle protein, Paired helical filament-tau, PHF-tau' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code VQIINK _entity_poly.pdbx_seq_one_letter_code_can VQIINK _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 GLN n 1 3 ILE n 1 4 ILE n 1 5 ASN n 1 6 LYS n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 6 _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name Human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 275 275 VAL VAL A . n A 1 2 GLN 2 276 276 GLN GLN A . n A 1 3 ILE 3 277 277 ILE ILE A . n A 1 4 ILE 4 278 278 ILE ILE A . n A 1 5 ASN 5 279 279 ASN ASN A . n A 1 6 LYS 6 280 280 LYS LYS A . n # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? 'data scaling' ? ? 'Wolfgang Kabsch' ? ? ? ? ? ? http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? XSCALE ? ? package . 1 ? phasing ? ? 'Randy J. Read' cimr-phaser@lists.cam.ac.uk ? ? ? ? ? http://www-structmed.cimr.cam.ac.uk/phaser/ ? PHASER ? ? program . 2 ? refinement ? ? 'Gerard Bricogne' buster-develop@GlobalPhasing.com ? ? ? ? ? http://www.globalphasing.com/buster/ ? BUSTER ? ? program . 3 ? 'data extraction' ? ? PDB deposit@deposit.rcsb.org 'July. 13, 2016' ? ? ? C++ http://sw-tools.pdb.org/apps/PDB_EXTRACT/ ? PDB_EXTRACT ? ? package 3.22 4 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? XDS ? ? ? . 5 # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 5V5C _cell.details ? _cell.formula_units_Z ? _cell.length_a 20.360 _cell.length_a_esd ? _cell.length_b 43.220 _cell.length_b_esd ? _cell.length_c 4.820 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 4 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5V5C _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5V5C _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON CRYSTALLOGRAPHY' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 1.48 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 17.08 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.29 M lithium nitrate, 24% PEG3350' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector CMOS _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'TVIPS TEMCAM-F416' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-08-25 # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.0251 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source 'ELECTRON MICROSCOPE' _diffrn_source.target ? _diffrn_source.type 'TECNAI F20 TEM' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.0251 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_synchrotron_site ? # _reflns.B_iso_Wilson_estimate 5.870 _reflns.entry_id 5V5C _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.250 _reflns.d_resolution_low 10.180 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 1226 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I -3.000 _reflns.percent_possible_obs 86.800 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 4.449 _reflns.pdbx_Rmerge_I_obs 0.239 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 3.580 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared 0.821 _reflns.pdbx_scaling_rejects 5 _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all 0.265 _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all 5454 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half 0.986 _reflns.pdbx_R_split ? # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_CC_half _reflns_shell.pdbx_R_split 1.250 1.310 ? 1.590 ? 267 148 ? 106 71.600 ? ? ? ? 0.475 ? ? ? ? ? ? ? ? 2.519 ? ? ? ? 0.599 ? ? 1 1 0.554 ? 1.310 1.370 ? 1.550 ? 390 153 ? 123 80.400 ? ? ? ? 0.560 ? ? ? ? ? ? ? ? 3.171 ? ? ? ? 0.665 ? ? 2 1 ? ? 1.370 1.440 ? 1.320 ? 447 152 ? 120 78.900 ? ? ? ? 0.825 ? ? ? ? ? ? ? ? 3.725 ? ? ? ? 0.949 ? ? 3 1 ? ? 1.440 1.530 ? 2.110 ? 575 155 ? 131 84.500 ? ? ? ? 0.648 ? ? ? ? ? ? ? ? 4.389 ? ? ? ? 0.725 ? ? 4 1 0.360 ? 1.530 1.640 ? 3.080 ? 606 145 ? 128 88.300 ? ? ? ? 0.398 ? ? ? ? ? ? ? ? 4.734 ? ? ? ? 0.437 ? ? 5 1 0.892 ? 1.640 1.770 ? 2.600 ? 474 114 ? 108 94.700 ? ? ? ? 0.449 ? ? ? ? ? ? ? ? 4.389 ? ? ? ? 0.498 ? ? 6 1 0.553 ? 1.770 1.940 ? 3.280 ? 536 115 ? 109 94.800 ? ? ? ? 0.385 ? ? ? ? ? ? ? ? 4.917 ? ? ? ? 0.423 ? ? 7 1 0.808 ? 1.940 2.170 ? 5.050 ? 626 118 ? 113 95.800 ? ? ? ? 0.297 ? ? ? ? ? ? ? ? 5.540 ? ? ? ? 0.324 ? ? 8 1 0.800 ? 2.170 2.500 ? 5.840 ? 639 110 ? 110 100.000 ? ? ? ? 0.266 ? ? ? ? ? ? ? ? 5.809 ? ? ? ? 0.291 ? ? 9 1 0.995 ? 2.500 3.060 ? 5.160 ? 312 76 ? 71 93.400 ? ? ? ? 0.225 ? ? ? ? ? ? ? ? 4.394 ? ? ? ? 0.252 ? ? 10 1 0.935 ? 3.060 4.330 ? 9.400 ? 399 79 ? 71 89.900 ? ? ? ? 0.158 ? ? ? ? ? ? ? ? 5.620 ? ? ? ? 0.175 ? ? 11 1 0.978 ? 4.330 10.180 ? 8.760 ? 183 47 ? 36 76.600 ? ? ? ? 0.132 ? ? ? ? ? ? ? ? 5.083 ? ? ? ? 0.142 ? ? 12 1 0.995 ? # _refine.aniso_B[1][1] 0.3575 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][2] -4.8859 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 4.5283 _refine.B_iso_max 49.960 _refine.B_iso_mean 15.3000 _refine.B_iso_min 3.000 _refine.correlation_coeff_Fo_to_Fc 0.9086 _refine.correlation_coeff_Fo_to_Fc_free 0.9428 _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5V5C _refine.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.2500 _refine.ls_d_res_low 10.1800 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 1226 _refine.ls_number_reflns_R_free 126 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 87.1400 _refine.ls_percent_reflns_R_free 10.2800 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2244 _refine.ls_R_factor_R_free 0.2664 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2194 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI 0.0700 _refine.pdbx_overall_SU_R_free_Blow_DPI 0.0740 _refine.pdbx_overall_SU_R_Blow_DPI 0.0670 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI 0.0720 _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_ls_shell.pdbx_refine_id 'ELECTRON CRYSTALLOGRAPHY' _refine_ls_shell.d_res_high 1.2500 _refine_ls_shell.d_res_low 1.4000 _refine_ls_shell.number_reflns_all 277 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 29 _refine_ls_shell.number_reflns_R_work 248 _refine_ls_shell.percent_reflns_obs 87.1400 _refine_ls_shell.percent_reflns_R_free 10.4700 _refine_ls_shell.R_factor_all 0.2458 _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.2471 _refine_ls_shell.R_factor_R_free_error 0.0000 _refine_ls_shell.R_factor_R_work 0.2456 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5V5C _struct.title 'VQIINK, Structure of the amyloid-spine from microtubule associated protein tau Repeat 2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5V5C _struct_keywords.text ;Amyloid, tau, Alzheimer's Disease, tauopathy, MAPT, STRUCTURAL PROTEIN ; _struct_keywords.pdbx_keywords 'STRUCTURAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5V5C _struct_ref.pdbx_db_accession 5V5C _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5V5C _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 6 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5V5C _struct_ref_seq.db_align_beg 275 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 280 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 275 _struct_ref_seq.pdbx_auth_seq_align_end 280 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octadecameric _pdbx_struct_assembly.oligomeric_count 18 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A 1 2 A 1 3 A 1 4 A 1 5 A 1 6 A 1 7 A 1 8 A 1 9 A 1 10 A 1 11 A 1 12 A 1 13 A 1 14 A 1 15 A 1 16 A 1 17 A 1 18 A # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support homology _pdbx_struct_assembly_auth_evidence.details ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 1_551 x,y,z-4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -19.2800000000 3 'crystal symmetry operation' 1_552 x,y,z-3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -14.4600000000 4 'crystal symmetry operation' 1_553 x,y,z-2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -9.6400000000 5 'crystal symmetry operation' 1_554 x,y,z-1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 -4.8200000000 6 'crystal symmetry operation' 1_556 x,y,z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 4.8200000000 7 'crystal symmetry operation' 1_557 x,y,z+2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 9.6400000000 8 'crystal symmetry operation' 1_558 x,y,z+3 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 14.4600000000 9 'crystal symmetry operation' 1_559 x,y,z+4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 19.2800000000 10 'crystal symmetry operation' 4_551 x+1/2,-y+1/2,-z-4 1.0000000000 0.0000000000 0.0000000000 10.1800000000 0.0000000000 -1.0000000000 0.0000000000 21.6100000000 0.0000000000 0.0000000000 -1.0000000000 -19.2800000000 11 'crystal symmetry operation' 4_552 x+1/2,-y+1/2,-z-3 1.0000000000 0.0000000000 0.0000000000 10.1800000000 0.0000000000 -1.0000000000 0.0000000000 21.6100000000 0.0000000000 0.0000000000 -1.0000000000 -14.4600000000 12 'crystal symmetry operation' 4_553 x+1/2,-y+1/2,-z-2 1.0000000000 0.0000000000 0.0000000000 10.1800000000 0.0000000000 -1.0000000000 0.0000000000 21.6100000000 0.0000000000 0.0000000000 -1.0000000000 -9.6400000000 13 'crystal symmetry operation' 4_554 x+1/2,-y+1/2,-z-1 1.0000000000 0.0000000000 0.0000000000 10.1800000000 0.0000000000 -1.0000000000 0.0000000000 21.6100000000 0.0000000000 0.0000000000 -1.0000000000 -4.8200000000 14 'crystal symmetry operation' 4_555 x+1/2,-y+1/2,-z 1.0000000000 0.0000000000 0.0000000000 10.1800000000 0.0000000000 -1.0000000000 0.0000000000 21.6100000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 15 'crystal symmetry operation' 4_556 x+1/2,-y+1/2,-z+1 1.0000000000 0.0000000000 0.0000000000 10.1800000000 0.0000000000 -1.0000000000 0.0000000000 21.6100000000 0.0000000000 0.0000000000 -1.0000000000 4.8200000000 16 'crystal symmetry operation' 4_557 x+1/2,-y+1/2,-z+2 1.0000000000 0.0000000000 0.0000000000 10.1800000000 0.0000000000 -1.0000000000 0.0000000000 21.6100000000 0.0000000000 0.0000000000 -1.0000000000 9.6400000000 17 'crystal symmetry operation' 4_558 x+1/2,-y+1/2,-z+3 1.0000000000 0.0000000000 0.0000000000 10.1800000000 0.0000000000 -1.0000000000 0.0000000000 21.6100000000 0.0000000000 0.0000000000 -1.0000000000 14.4600000000 18 'crystal symmetry operation' 4_559 x+1/2,-y+1/2,-z+4 1.0000000000 0.0000000000 0.0000000000 10.1800000000 0.0000000000 -1.0000000000 0.0000000000 21.6100000000 0.0000000000 0.0000000000 -1.0000000000 19.2800000000 # _phasing.method MR # _em_3d_fitting.id 1 _em_3d_fitting.entry_id 5V5C _em_3d_fitting.ref_space ? _em_3d_fitting.ref_protocol ? _em_3d_fitting.target_criteria ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.method ? _em_3d_fitting.details ? # _em_3d_reconstruction.entry_id 5V5C _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles ? _em_3d_reconstruction.resolution ? _em_3d_reconstruction.resolution_method 'DIFFRACTION PATTERN/LAYERLINES' _em_3d_reconstruction.symmetry_type '3D CRYSTAL' _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'VQIINK Tau peptide' _em_entity_assembly.source NATURAL _em_entity_assembly.type 'ORGANELLE OR CELLULAR COMPONENT' _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 5V5C _em_imaging.accelerating_voltage 200 _em_imaging.alignment_procedure ? _em_imaging.c2_aperture_diameter ? _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen ? _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TECNAI 20' _em_imaging.mode DIFFRACTION _em_imaging.nominal_cs ? _em_imaging.nominal_defocus_max ? _em_imaging.nominal_defocus_min ? _em_imaging.nominal_magnification ? _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model ? _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature ? _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity ? _em_vitrification.instrument ? _em_vitrification.entry_id 5V5C _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 5V5C _em_experiment.id 1 _em_experiment.aggregation_state '3D ARRAY' _em_experiment.reconstruction_method CRYSTALLOGRAPHY _em_experiment.entity_assembly_id 1 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASN N N N N 1 ASN CA C N S 2 ASN C C N N 3 ASN O O N N 4 ASN CB C N N 5 ASN CG C N N 6 ASN OD1 O N N 7 ASN ND2 N N N 8 ASN OXT O N N 9 ASN H H N N 10 ASN H2 H N N 11 ASN HA H N N 12 ASN HB2 H N N 13 ASN HB3 H N N 14 ASN HD21 H N N 15 ASN HD22 H N N 16 ASN HXT H N N 17 GLN N N N N 18 GLN CA C N S 19 GLN C C N N 20 GLN O O N N 21 GLN CB C N N 22 GLN CG C N N 23 GLN CD C N N 24 GLN OE1 O N N 25 GLN NE2 N N N 26 GLN OXT O N N 27 GLN H H N N 28 GLN H2 H N N 29 GLN HA H N N 30 GLN HB2 H N N 31 GLN HB3 H N N 32 GLN HG2 H N N 33 GLN HG3 H N N 34 GLN HE21 H N N 35 GLN HE22 H N N 36 GLN HXT H N N 37 ILE N N N N 38 ILE CA C N S 39 ILE C C N N 40 ILE O O N N 41 ILE CB C N S 42 ILE CG1 C N N 43 ILE CG2 C N N 44 ILE CD1 C N N 45 ILE OXT O N N 46 ILE H H N N 47 ILE H2 H N N 48 ILE HA H N N 49 ILE HB H N N 50 ILE HG12 H N N 51 ILE HG13 H N N 52 ILE HG21 H N N 53 ILE HG22 H N N 54 ILE HG23 H N N 55 ILE HD11 H N N 56 ILE HD12 H N N 57 ILE HD13 H N N 58 ILE HXT H N N 59 LYS N N N N 60 LYS CA C N S 61 LYS C C N N 62 LYS O O N N 63 LYS CB C N N 64 LYS CG C N N 65 LYS CD C N N 66 LYS CE C N N 67 LYS NZ N N N 68 LYS OXT O N N 69 LYS H H N N 70 LYS H2 H N N 71 LYS HA H N N 72 LYS HB2 H N N 73 LYS HB3 H N N 74 LYS HG2 H N N 75 LYS HG3 H N N 76 LYS HD2 H N N 77 LYS HD3 H N N 78 LYS HE2 H N N 79 LYS HE3 H N N 80 LYS HZ1 H N N 81 LYS HZ2 H N N 82 LYS HZ3 H N N 83 LYS HXT H N N 84 VAL N N N N 85 VAL CA C N S 86 VAL C C N N 87 VAL O O N N 88 VAL CB C N N 89 VAL CG1 C N N 90 VAL CG2 C N N 91 VAL OXT O N N 92 VAL H H N N 93 VAL H2 H N N 94 VAL HA H N N 95 VAL HB H N N 96 VAL HG11 H N N 97 VAL HG12 H N N 98 VAL HG13 H N N 99 VAL HG21 H N N 100 VAL HG22 H N N 101 VAL HG23 H N N 102 VAL HXT H N N 103 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASN N CA sing N N 1 ASN N H sing N N 2 ASN N H2 sing N N 3 ASN CA C sing N N 4 ASN CA CB sing N N 5 ASN CA HA sing N N 6 ASN C O doub N N 7 ASN C OXT sing N N 8 ASN CB CG sing N N 9 ASN CB HB2 sing N N 10 ASN CB HB3 sing N N 11 ASN CG OD1 doub N N 12 ASN CG ND2 sing N N 13 ASN ND2 HD21 sing N N 14 ASN ND2 HD22 sing N N 15 ASN OXT HXT sing N N 16 GLN N CA sing N N 17 GLN N H sing N N 18 GLN N H2 sing N N 19 GLN CA C sing N N 20 GLN CA CB sing N N 21 GLN CA HA sing N N 22 GLN C O doub N N 23 GLN C OXT sing N N 24 GLN CB CG sing N N 25 GLN CB HB2 sing N N 26 GLN CB HB3 sing N N 27 GLN CG CD sing N N 28 GLN CG HG2 sing N N 29 GLN CG HG3 sing N N 30 GLN CD OE1 doub N N 31 GLN CD NE2 sing N N 32 GLN NE2 HE21 sing N N 33 GLN NE2 HE22 sing N N 34 GLN OXT HXT sing N N 35 ILE N CA sing N N 36 ILE N H sing N N 37 ILE N H2 sing N N 38 ILE CA C sing N N 39 ILE CA CB sing N N 40 ILE CA HA sing N N 41 ILE C O doub N N 42 ILE C OXT sing N N 43 ILE CB CG1 sing N N 44 ILE CB CG2 sing N N 45 ILE CB HB sing N N 46 ILE CG1 CD1 sing N N 47 ILE CG1 HG12 sing N N 48 ILE CG1 HG13 sing N N 49 ILE CG2 HG21 sing N N 50 ILE CG2 HG22 sing N N 51 ILE CG2 HG23 sing N N 52 ILE CD1 HD11 sing N N 53 ILE CD1 HD12 sing N N 54 ILE CD1 HD13 sing N N 55 ILE OXT HXT sing N N 56 LYS N CA sing N N 57 LYS N H sing N N 58 LYS N H2 sing N N 59 LYS CA C sing N N 60 LYS CA CB sing N N 61 LYS CA HA sing N N 62 LYS C O doub N N 63 LYS C OXT sing N N 64 LYS CB CG sing N N 65 LYS CB HB2 sing N N 66 LYS CB HB3 sing N N 67 LYS CG CD sing N N 68 LYS CG HG2 sing N N 69 LYS CG HG3 sing N N 70 LYS CD CE sing N N 71 LYS CD HD2 sing N N 72 LYS CD HD3 sing N N 73 LYS CE NZ sing N N 74 LYS CE HE2 sing N N 75 LYS CE HE3 sing N N 76 LYS NZ HZ1 sing N N 77 LYS NZ HZ2 sing N N 78 LYS NZ HZ3 sing N N 79 LYS OXT HXT sing N N 80 VAL N CA sing N N 81 VAL N H sing N N 82 VAL N H2 sing N N 83 VAL CA C sing N N 84 VAL CA CB sing N N 85 VAL CA HA sing N N 86 VAL C O doub N N 87 VAL C OXT sing N N 88 VAL CB CG1 sing N N 89 VAL CB CG2 sing N N 90 VAL CB HB sing N N 91 VAL CG1 HG11 sing N N 92 VAL CG1 HG12 sing N N 93 VAL CG1 HG13 sing N N 94 VAL CG2 HG21 sing N N 95 VAL CG2 HG22 sing N N 96 VAL CG2 HG23 sing N N 97 VAL OXT HXT sing N N 98 # _em_3d_crystal_entity.id 1 _em_3d_crystal_entity.image_processing_id 1 _em_3d_crystal_entity.angle_alpha 90 _em_3d_crystal_entity.angle_beta 90 _em_3d_crystal_entity.angle_gamma 90 _em_3d_crystal_entity.length_a 20.36 _em_3d_crystal_entity.length_b 43.22 _em_3d_crystal_entity.length_c 4.82 _em_3d_crystal_entity.space_group_name 'P 21 21 2' _em_3d_crystal_entity.space_group_num 18 # _em_crystal_formation.id 1 _em_crystal_formation.specimen_id 1 _em_crystal_formation.atmosphere ? _em_crystal_formation.details ? _em_crystal_formation.instrument ? _em_crystal_formation.lipid_mixture ? _em_crystal_formation.lipid_protein_ratio ? _em_crystal_formation.temperature 291 _em_crystal_formation.time ? _em_crystal_formation.time_unit ? # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type NONE _em_ctf_correction.details ? # _em_diffraction.id 1 _em_diffraction.camera_length 730 _em_diffraction.imaging_id 1 _em_diffraction.tilt_angle_list ? # _em_diffraction_shell.id 1 _em_diffraction_shell.em_diffraction_stats_id 1 _em_diffraction_shell.fourier_space_coverage 71.6 _em_diffraction_shell.high_resolution 1.25 _em_diffraction_shell.low_resolution 1.31 _em_diffraction_shell.multiplicity 2.5 _em_diffraction_shell.num_structure_factors 106 _em_diffraction_shell.phase_residual 0.1 # _em_diffraction_stats.id 1 _em_diffraction_stats.details 'This is a crystallography experiment. Phases were not measured.' _em_diffraction_stats.image_processing_id 1 _em_diffraction_stats.fourier_space_coverage 86.8 _em_diffraction_stats.high_resolution 1.25 _em_diffraction_stats.num_intensities_measured 5454 _em_diffraction_stats.num_structure_factors 1226 _em_diffraction_stats.overall_phase_error 0.1 _em_diffraction_stats.overall_phase_residual 0.1 _em_diffraction_stats.phase_error_rejection_criteria 0.1 _em_diffraction_stats.r_merge 23.9 _em_diffraction_stats.r_sym 23.9 # _em_entity_assembly_naturalsource.id 1 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 9606 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Homo sapiens' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 0.1 _em_image_recording.average_exposure_time ? _em_image_recording.details ? _em_image_recording.detector_mode ? _em_image_recording.film_or_detector_model 'TVIPS TEMCAM-F416 (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged ? _em_image_recording.num_real_images ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'IMAGE ACQUISITION' ? ? ? ? ? 1 2 MASKING ? ? ? ? ? ? 3 'CTF CORRECTION' ? ? ? 1 ? ? 4 'LAYERLINE INDEXING' ? ? ? ? ? ? 5 'DIFFRACTION INDEXING' ? ? ? ? ? ? 6 'MODEL FITTING' ? Coot 0.8.2 ? 1 ? 7 OTHER ? ? ? ? ? ? 8 'MOLECULAR REPLACEMENT' ? Phaser ? 1 ? ? 9 'LATTICE DISTORTION CORRECTION' ? ? ? 1 ? ? 10 'SYMMETRY DETERMINATION' ? XDS ? 1 ? ? 11 'CRYSTALLOGRAPHY MERGING' ? XSCALE ? 1 ? ? 12 RECONSTRUCTION ? ? ? 1 ? ? 13 'MODEL REFINEMENT' ? BUSTER 2.10.0 ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration ? _em_specimen.details '3D micro-crystal' _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)' 'United States' '1F32 NS095661' 1 'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' '1R01 AG029430' 2 'National Institutes of Health/National Institute on Aging (NIH/NIA)' 'United States' 'RF1 AG054022' 3 # _atom_sites.entry_id 5V5C _atom_sites.fract_transf_matrix[1][1] 0.049116 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023137 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.207469 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 N N . VAL A 1 1 ? 3.292 2.709 0.799 1.00 13.25 ? 275 VAL A N 1 ATOM 2 C CA . VAL A 1 1 ? 4.334 3.587 1.309 1.00 12.17 ? 275 VAL A CA 1 ATOM 3 C C . VAL A 1 1 ? 4.140 5.001 0.779 1.00 9.47 ? 275 VAL A C 1 ATOM 4 O O . VAL A 1 1 ? 3.832 5.172 -0.409 1.00 8.59 ? 275 VAL A O 1 ATOM 5 C CB . VAL A 1 1 ? 5.731 3.028 0.925 1.00 17.45 ? 275 VAL A CB 1 ATOM 6 C CG1 . VAL A 1 1 ? 6.853 4.002 1.292 1.00 17.43 ? 275 VAL A CG1 1 ATOM 7 C CG2 . VAL A 1 1 ? 5.965 1.670 1.572 1.00 17.65 ? 275 VAL A CG2 1 ATOM 8 H H1 . VAL A 1 1 ? 3.446 2.394 -0.154 1.00 12.71 ? 275 VAL A H1 1 ATOM 9 H HA . VAL A 1 1 ? 4.257 3.607 2.395 1.00 12.99 ? 275 VAL A HA 1 ATOM 10 H HB . VAL A 1 1 ? 5.764 2.887 -0.154 1.00 18.07 ? 275 VAL A HB 1 ATOM 11 H HG11 . VAL A 1 1 ? 6.935 4.767 0.520 1.00 16.93 ? 275 VAL A HG11 1 ATOM 12 H HG12 . VAL A 1 1 ? 7.794 3.459 1.366 1.00 17.44 ? 275 VAL A HG12 1 ATOM 13 H HG13 . VAL A 1 1 ? 6.618 4.467 2.248 1.00 18.00 ? 275 VAL A HG13 1 ATOM 14 H HG21 . VAL A 1 1 ? 5.946 1.788 2.654 1.00 17.65 ? 275 VAL A HG21 1 ATOM 15 H HG22 . VAL A 1 1 ? 6.934 1.285 1.258 1.00 17.37 ? 275 VAL A HG22 1 ATOM 16 H HG23 . VAL A 1 1 ? 5.182 0.980 1.261 1.00 17.79 ? 275 VAL A HG23 1 ATOM 17 N N . GLN A 1 2 ? 4.273 6.016 1.663 1.00 4.51 ? 276 GLN A N 1 ATOM 18 C CA . GLN A 1 2 ? 4.163 7.432 1.288 1.00 4.67 ? 276 GLN A CA 1 ATOM 19 C C . GLN A 1 2 ? 5.275 8.222 1.941 1.00 3.96 ? 276 GLN A C 1 ATOM 20 O O . GLN A 1 2 ? 5.284 8.378 3.169 1.00 3.01 ? 276 GLN A O 1 ATOM 21 C CB . GLN A 1 2 ? 2.832 8.050 1.724 1.00 5.87 ? 276 GLN A CB 1 ATOM 22 C CG . GLN A 1 2 ? 1.592 7.478 1.089 1.00 8.57 ? 276 GLN A CG 1 ATOM 23 C CD . GLN A 1 2 ? 0.348 8.234 1.538 1.00 4.41 ? 276 GLN A CD 1 ATOM 24 O OE1 . GLN A 1 2 ? 0.162 8.497 2.733 1.00 12.30 ? 276 GLN A OE1 1 ATOM 25 N NE2 . GLN A 1 2 ? -0.529 8.571 0.630 1.00 5.10 ? 276 GLN A NE2 1 ATOM 26 H H . GLN A 1 2 ? 4.470 5.880 2.650 1.00 6.85 ? 276 GLN A H 1 ATOM 27 H HA . GLN A 1 2 ? 4.233 7.541 0.210 1.00 5.37 ? 276 GLN A HA 1 ATOM 28 H HB2 . GLN A 1 2 ? 2.746 7.930 2.803 1.00 5.27 ? 276 GLN A HB2 1 ATOM 29 H HB3 . GLN A 1 2 ? 2.850 9.109 1.473 1.00 5.44 ? 276 GLN A HB3 1 ATOM 30 H HG2 . GLN A 1 2 ? 1.693 7.531 0.006 1.00 9.80 ? 276 GLN A HG2 1 ATOM 31 H HG3 . GLN A 1 2 ? 1.484 6.441 1.405 1.00 9.55 ? 276 GLN A HG3 1 ATOM 32 H HE21 . GLN A 1 2 ? -1.375 9.064 0.901 1.00 4.12 ? 276 GLN A HE21 1 ATOM 33 H HE22 . GLN A 1 2 ? -0.389 8.319 -0.343 1.00 5.72 ? 276 GLN A HE22 1 ATOM 34 N N . ILE A 1 3 ? 6.195 8.741 1.106 1.00 3.00 ? 277 ILE A N 1 ATOM 35 C CA . ILE A 1 3 ? 7.302 9.618 1.486 1.00 3.00 ? 277 ILE A CA 1 ATOM 36 C C . ILE A 1 3 ? 6.986 10.984 0.873 1.00 6.45 ? 277 ILE A C 1 ATOM 37 O O . ILE A 1 3 ? 6.987 11.115 -0.358 1.00 3.19 ? 277 ILE A O 1 ATOM 38 C CB . ILE A 1 3 ? 8.641 9.040 0.982 1.00 6.55 ? 277 ILE A CB 1 ATOM 39 C CG1 . ILE A 1 3 ? 8.751 7.573 1.409 1.00 8.12 ? 277 ILE A CG1 1 ATOM 40 C CG2 . ILE A 1 3 ? 9.794 9.874 1.535 1.00 8.66 ? 277 ILE A CG2 1 ATOM 41 C CD1 . ILE A 1 3 ? 9.979 6.875 1.034 1.00 18.90 ? 277 ILE A CD1 1 ATOM 42 H H . ILE A 1 3 ? 6.195 8.541 0.111 1.00 5.10 ? 277 ILE A H 1 ATOM 43 H HA . ILE A 1 3 ? 7.360 9.697 2.569 1.00 5.84 ? 277 ILE A HA 1 ATOM 44 H HB . ILE A 1 3 ? 8.659 9.089 -0.106 1.00 5.54 ? 277 ILE A HB 1 ATOM 45 H HG12 . ILE A 1 3 ? 8.646 7.518 2.491 1.00 6.75 ? 277 ILE A HG12 1 ATOM 46 H HG13 . ILE A 1 3 ? 7.946 7.015 0.935 1.00 7.83 ? 277 ILE A HG13 1 ATOM 47 H HG21 . ILE A 1 3 ? 9.635 10.913 1.257 1.00 8.92 ? 277 ILE A HG21 1 ATOM 48 H HG22 . ILE A 1 3 ? 10.733 9.527 1.107 1.00 7.56 ? 277 ILE A HG22 1 ATOM 49 H HG23 . ILE A 1 3 ? 9.823 9.772 2.619 1.00 9.81 ? 277 ILE A HG23 1 ATOM 50 H HD11 . ILE A 1 3 ? 10.154 7.022 -0.031 1.00 18.66 ? 277 ILE A HD11 1 ATOM 51 H HD12 . ILE A 1 3 ? 9.846 5.815 1.242 1.00 19.19 ? 277 ILE A HD12 1 ATOM 52 H HD13 . ILE A 1 3 ? 10.812 7.262 1.618 1.00 18.46 ? 277 ILE A HD13 1 ATOM 53 N N . ILE A 1 4 ? 6.686 11.990 1.717 1.00 4.14 ? 278 ILE A N 1 ATOM 54 C CA . ILE A 1 4 ? 6.279 13.312 1.259 1.00 3.00 ? 278 ILE A CA 1 ATOM 55 C C . ILE A 1 4 ? 7.090 14.458 1.851 1.00 3.00 ? 278 ILE A C 1 ATOM 56 O O . ILE A 1 4 ? 7.069 14.624 3.059 1.00 3.00 ? 278 ILE A O 1 ATOM 57 C CB . ILE A 1 4 ? 4.768 13.537 1.576 1.00 8.10 ? 278 ILE A CB 1 ATOM 58 C CG1 . ILE A 1 4 ? 3.866 12.425 0.941 1.00 10.62 ? 278 ILE A CG1 1 ATOM 59 C CG2 . ILE A 1 4 ? 4.300 14.957 1.169 1.00 9.93 ? 278 ILE A CG2 1 ATOM 60 C CD1 . ILE A 1 4 ? 2.371 12.528 1.286 1.00 22.62 ? 278 ILE A CD1 1 ATOM 61 H H . ILE A 1 4 ? 6.734 11.917 2.728 1.00 5.58 ? 278 ILE A H 1 ATOM 62 H HA . ILE A 1 4 ? 6.371 13.359 0.176 1.00 7.09 ? 278 ILE A HA 1 ATOM 63 H HB . ILE A 1 4 ? 4.669 13.462 2.658 1.00 8.20 ? 278 ILE A HB 1 ATOM 64 H HG12 . ILE A 1 4 ? 3.964 12.469 -0.142 1.00 12.05 ? 278 ILE A HG12 1 ATOM 65 H HG13 . ILE A 1 4 ? 4.184 11.447 1.298 1.00 11.32 ? 278 ILE A HG13 1 ATOM 66 H HG21 . ILE A 1 4 ? 4.375 15.608 2.039 1.00 10.89 ? 278 ILE A HG21 1 ATOM 67 H HG22 . ILE A 1 4 ? 3.274 14.942 0.806 1.00 9.00 ? 278 ILE A HG22 1 ATOM 68 H HG23 . ILE A 1 4 ? 4.940 15.332 0.371 1.00 11.60 ? 278 ILE A HG23 1 ATOM 69 H HD11 . ILE A 1 4 ? 2.272 12.927 2.294 1.00 22.47 ? 278 ILE A HD11 1 ATOM 70 H HD12 . ILE A 1 4 ? 1.936 11.531 1.241 1.00 22.64 ? 278 ILE A HD12 1 ATOM 71 H HD13 . ILE A 1 4 ? 1.873 13.178 0.568 1.00 23.25 ? 278 ILE A HD13 1 ATOM 72 N N . ASN A 1 5 ? 7.624 15.346 0.998 1.00 3.00 ? 279 ASN A N 1 ATOM 73 C CA . ASN A 1 5 ? 8.324 16.563 1.416 1.00 4.12 ? 279 ASN A CA 1 ATOM 74 C C . ASN A 1 5 ? 7.635 17.790 0.784 1.00 11.78 ? 279 ASN A C 1 ATOM 75 O O . ASN A 1 5 ? 7.782 18.009 -0.418 1.00 9.41 ? 279 ASN A O 1 ATOM 76 C CB . ASN A 1 5 ? 9.797 16.495 1.058 1.00 7.78 ? 279 ASN A CB 1 ATOM 77 C CG . ASN A 1 5 ? 10.586 17.697 1.510 1.00 23.37 ? 279 ASN A CG 1 ATOM 78 O OD1 . ASN A 1 5 ? 10.990 17.786 2.675 1.00 11.46 ? 279 ASN A OD1 1 ATOM 79 N ND2 . ASN A 1 5 ? 10.856 18.632 0.603 1.00 18.33 ? 279 ASN A ND2 1 ATOM 80 H H . ASN A 1 5 ? 7.602 15.239 -0.012 1.00 3.28 ? 279 ASN A H 1 ATOM 81 H HA . ASN A 1 5 ? 8.284 16.656 2.499 1.00 5.26 ? 279 ASN A HA 1 ATOM 82 H HB2 . ASN A 1 5 ? 10.207 15.641 1.593 1.00 4.21 ? 279 ASN A HB2 1 ATOM 83 H HB3 . ASN A 1 5 ? 9.909 16.356 -0.016 1.00 8.58 ? 279 ASN A HB3 1 ATOM 84 H HD21 . ASN A 1 5 ? 11.382 19.458 0.868 1.00 18.02 ? 279 ASN A HD21 1 ATOM 85 H HD22 . ASN A 1 5 ? 10.538 18.527 -0.355 1.00 19.06 ? 279 ASN A HD22 1 ATOM 86 N N . LYS A 1 6 ? 6.925 18.790 1.523 1.00 11.28 ? 280 LYS A N 1 ATOM 87 C CA . LYS A 1 6 ? 6.180 19.952 1.020 1.00 17.28 ? 280 LYS A CA 1 ATOM 88 C C . LYS A 1 6 ? 6.727 21.288 1.548 1.00 30.71 ? 280 LYS A C 1 ATOM 89 O O . LYS A 1 6 ? 7.470 21.288 2.554 1.00 36.70 ? 280 LYS A O 1 ATOM 90 C CB . LYS A 1 6 ? 4.663 19.795 1.294 1.00 21.35 ? 280 LYS A CB 1 ATOM 91 C CG . LYS A 1 6 ? 4.262 19.708 2.773 1.00 36.04 ? 280 LYS A CG 1 ATOM 92 C CD . LYS A 1 6 ? 2.748 19.553 3.004 1.00 41.32 ? 280 LYS A CD 1 ATOM 93 C CE . LYS A 1 6 ? 2.173 18.233 2.550 1.00 48.14 ? 280 LYS A CE 1 ATOM 94 N NZ . LYS A 1 6 ? 0.706 18.143 2.799 1.00 49.96 ? 280 LYS A NZ 1 ATOM 95 O OXT . LYS A 1 6 ? 6.487 22.324 0.889 1.00 45.04 ? 280 LYS A OXT 1 ATOM 96 H H . LYS A 1 6 ? 6.910 18.707 2.534 1.00 10.89 ? 280 LYS A H 1 ATOM 97 H HA . LYS A 1 6 ? 6.285 20.004 -0.062 1.00 16.42 ? 280 LYS A HA 1 ATOM 98 H HB2 . LYS A 1 6 ? 4.148 20.649 0.858 1.00 21.36 ? 280 LYS A HB2 1 ATOM 99 H HB3 . LYS A 1 6 ? 4.326 18.879 0.810 1.00 21.68 ? 280 LYS A HB3 1 ATOM 100 H HG2 . LYS A 1 6 ? 4.759 18.851 3.226 1.00 36.27 ? 280 LYS A HG2 1 ATOM 101 H HG3 . LYS A 1 6 ? 4.561 20.628 3.272 1.00 36.13 ? 280 LYS A HG3 1 ATOM 102 H HD2 . LYS A 1 6 ? 2.552 19.638 4.071 1.00 41.41 ? 280 LYS A HD2 1 ATOM 103 H HD3 . LYS A 1 6 ? 2.225 20.346 2.471 1.00 41.31 ? 280 LYS A HD3 1 ATOM 104 H HE2 . LYS A 1 6 ? 2.345 18.114 1.480 1.00 48.48 ? 280 LYS A HE2 1 ATOM 105 H HE3 . LYS A 1 6 ? 2.657 17.427 3.099 1.00 48.21 ? 280 LYS A HE3 1 ATOM 106 H HZ2 . LYS A 1 6 ? 0.284 17.500 2.137 1.00 49.93 ? 280 LYS A HZ2 1 ATOM 107 H HZ3 . LYS A 1 6 ? 0.268 19.053 2.697 1.00 49.81 ? 280 LYS A HZ3 1 #