0.008432
0.000000
0.000000
0.000000
0.008432
0.000000
0.000000
0.000000
0.008432
0.00000
0.00000
0.00000
Wedepohl, S.
Dernedde, J.
Vahedi-Faridi, A.
Tauber, R.
Saenger, W.
Bulut, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
90.00
118.598
118.598
118.598
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C6 H12 O6
180.156
beta-D-mannopyranose
beta-D-mannose; D-mannose; mannose
D-saccharide, beta linking
Ca 2
40.078
CALCIUM ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C6 H12 O6
180.156
alpha-D-mannopyranose
alpha-D-mannose; D-mannose; mannose
D-saccharide, alpha linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H15 N O6
221.208
2-acetamido-2-deoxy-beta-D-glucopyranose
N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE
D-saccharide, beta linking
C4 H10 O3
106.120
DI(HYDROXYETHYL)ETHER
non-polymer
C8 H18 O5
194.226
TETRAETHYLENE GLYCOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
R
C
N
75
S
C
N
76
S
C
N
77
S
C
N
78
R
C
N
79
N
C
N
80
N
O
N
81
N
O
N
82
N
O
N
83
N
O
N
84
N
O
N
85
N
O
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
CA
N
99
N
N
N
100
R
C
N
101
N
C
N
102
N
O
N
103
N
C
N
104
N
S
N
105
N
O
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
S
C
N
115
N
C
N
116
N
O
N
117
N
C
N
118
N
C
N
119
N
C
N
120
N
O
N
121
N
N
N
122
N
O
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
N
N
134
S
C
N
135
N
C
N
136
N
O
N
137
N
C
N
138
N
C
N
139
N
C
N
140
N
O
N
141
N
O
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
N
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
O
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
C
N
163
N
O
N
164
N
C
N
165
N
O
N
166
N
C
N
167
N
O
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
N
N
177
S
C
N
178
N
C
N
179
N
O
N
180
N
C
Y
181
N
C
Y
182
N
N
Y
183
N
C
Y
184
N
C
Y
185
N
N
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
N
N
201
S
C
N
202
N
C
N
203
N
O
N
204
S
C
N
205
N
C
N
206
N
C
N
207
N
C
N
208
N
O
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
N
N
223
S
C
N
224
N
C
N
225
N
O
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
C
N
230
N
O
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
C
N
251
N
C
N
252
N
N
N
253
N
O
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
S
C
N
270
S
C
N
271
S
C
N
272
S
C
N
273
R
C
N
274
N
C
N
275
N
O
N
276
N
O
N
277
N
O
N
278
N
O
N
279
N
O
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
N
N
294
S
C
N
295
N
C
N
296
N
O
N
297
N
C
N
298
N
C
N
299
N
S
N
300
N
C
N
301
N
O
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
R
C
N
314
R
C
N
315
R
C
N
316
S
C
N
317
R
C
N
318
N
C
N
319
N
C
N
320
N
C
N
321
N
N
N
322
N
O
N
323
N
O
N
324
N
O
N
325
N
O
N
326
N
O
N
327
N
O
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
C
N
344
N
O
N
345
N
C
N
346
N
O
N
347
N
C
N
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
O
N
361
N
C
N
362
N
C
N
363
N
O
N
364
N
C
N
365
N
C
N
366
N
O
N
367
N
C
N
368
N
C
N
369
N
O
N
370
N
C
N
371
N
C
N
372
N
O
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
N
N
392
S
C
N
393
N
C
N
394
N
O
N
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
Y
400
N
C
Y
401
N
C
N
402
N
O
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
N
N
415
S
C
N
416
N
C
N
417
N
O
N
418
N
C
N
419
N
C
N
420
N
C
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
N
N
432
S
C
N
433
N
C
N
434
N
O
N
435
N
C
N
436
N
O
N
437
N
O
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
N
N
446
S
C
N
447
N
C
N
448
N
O
N
449
R
C
N
450
N
O
N
451
N
C
N
452
N
O
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
N
N
463
S
C
N
464
N
C
N
465
N
O
N
466
N
C
Y
467
N
C
Y
468
N
C
Y
469
N
C
Y
470
N
N
Y
471
N
C
Y
472
N
C
Y
473
N
C
Y
474
N
C
Y
475
N
C
N
476
N
O
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
H
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
N
N
490
S
C
N
491
N
C
N
492
N
O
N
493
N
C
Y
494
N
C
Y
495
N
C
Y
496
N
C
Y
497
N
C
Y
498
N
C
Y
499
N
C
N
500
N
O
N
501
N
O
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
H
N
510
N
H
N
511
N
H
N
512
N
H
N
513
N
N
N
514
S
C
N
515
N
C
N
516
N
O
N
517
N
C
N
518
N
C
N
519
N
C
N
520
N
O
N
521
N
H
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
doub
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
doub
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
doub
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
Y
177
N
sing
Y
178
N
doub
Y
179
N
doub
N
180
N
sing
Y
181
N
sing
N
182
N
sing
Y
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
doub
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
doub
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
doub
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
Y
385
N
doub
Y
386
N
sing
Y
387
N
sing
N
388
N
sing
Y
389
N
doub
N
390
N
sing
Y
391
N
doub
N
392
N
sing
Y
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
doub
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
doub
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
doub
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
doub
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
Y
454
N
doub
Y
455
N
sing
Y
456
N
sing
N
457
N
sing
Y
458
N
doub
Y
459
N
sing
Y
460
N
sing
N
461
N
sing
Y
462
N
sing
Y
463
N
doub
N
464
N
sing
Y
465
N
doub
N
466
N
sing
Y
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
doub
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
Y
482
N
doub
Y
483
N
sing
Y
484
N
sing
N
485
N
sing
Y
486
N
doub
N
487
N
sing
Y
488
N
doub
N
489
N
sing
Y
490
N
sing
N
491
N
sing
N
492
N
sing
N
493
N
sing
N
494
N
sing
N
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
doub
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
sing
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
N
510
N
sing
N
511
N
sing
N
512
N
sing
GE
Chembiochem
1439-7633
18
1338
1345
10.1002/cbic.201700220
28489325
Reducing Macro- and Microheterogeneity of N-Glycans Enables the Crystal Structure of the Lectin and EGF-Like Domains of Human L-Selectin To Be Solved at 1.9 angstrom Resolution.
2017
10.2210/pdb5vc1/pdb
pdb_00005vc1
MAN B 3 HAS WRONG CHIRALITY AT ATOM C1
BMA B 4 HAS WRONG CHIRALITY AT ATOM C1
BMA B 5 HAS WRONG CHIRALITY AT ATOM C1
100
1
CCD
2017-02-25
RAYONIX MX-225
SINGLE WAVELENGTH
M
x-ray
1
0.9184
1.0
14.1
BESSY
0.9184
SYNCHROTRON
BESSY BEAMLINE 14.1
18412.682
L-selectin
UNP residues 39-195
N22Q, N139Q
1
man
polymer
910.823
beta-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1
man
branched
194.226
TETRAETHYLENE GLYCOL
1
man
non-polymer
106.120
DI(HYDROXYETHYL)ETHER
1
man
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
40.078
CALCIUM ION
1
syn
non-polymer
18.015
water
77
nat
water
CD62 antigen-like family member L,Leukocyte adhesion molecule 1,LAM-1,Leukocyte surface antigen Leu-8,Leukocyte-endothelial cell adhesion molecule 1,LECAM1,Lymph node homing receptor,TQ1,gp90-MEL
no
no
WTYHYSEKPMNWQRARRFCRDQYTDLVAIQNKAEIEYLEKTLPFSRSYYWIGIRKIGGIWTWVGTNKSLTEEAENWGDGE
PNNKKNKEDCVEIYIKRNKDAGKWNDDACHKLKAALCYTASCQPWSCSGHGECVEIINQYTCNCDVGYYGPQCQFVI
WTYHYSEKPMNWQRARRFCRDQYTDLVAIQNKAEIEYLEKTLPFSRSYYWIGIRKIGGIWTWVGTNKSLTEEAENWGDGE
PNNKKNKEDCVEIYIKRNKDAGKWNDDACHKLKAALCYTASCQPWSCSGHGECVEIINQYTCNCDVGYYGPQCQFVI
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
Human
sample
1
157
SELL, LNHR, LYAM1
9606
Homo sapiens
HEK293F
9606
Homo sapiens
Biological sequence
1
3.78
67.45
VAPOR DIFFUSION, SITTING DROP
7.5
100 mM sodium cacodylate pH 7.5, 200 mM calcium acetate, 40% (v/v) PEG 600
293.0
citation
pdbx_audit_support
reflns_shell
atom_site
chem_comp
database_PDB_caveat
entity
pdbx_branch_scheme
pdbx_chem_comp_identifier
pdbx_entity_branch
pdbx_entity_branch_descriptor
pdbx_entity_branch_link
pdbx_entity_branch_list
pdbx_entity_nonpoly
pdbx_nonpoly_scheme
pdbx_struct_assembly_gen
pdbx_struct_conn_angle
pdbx_validate_chiral
struct_asym
struct_conn
struct_site
struct_site_gen
chem_comp
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_conn
repository
Initial release
Carbohydrate remediation
repository
Remediation
Database references
Author supporting evidence
Data collection
Advisory
Atomic model
Data collection
Derived calculations
Structure summary
Data collection
Database references
Derived calculations
Refinement description
Structure summary
1
0
2017-06-14
1
1
2017-07-12
1
2
2019-10-16
2
0
2020-07-29
2
1
2024-01-17
_citation.country
_citation.journal_volume
_citation.page_first
_citation.page_last
_pdbx_audit_support.funding_organization
_atom_site.auth_asym_id
_atom_site.auth_seq_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_chem_comp.name
_chem_comp.type
_database_PDB_caveat.text
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_validate_chiral.auth_asym_id
_pdbx_validate_chiral.auth_seq_id
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_role
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_symmetry
_chem_comp.pdbx_synonyms
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
Germany
German Research Foundation
SFB-449
A
NAG
154
n
B
NAG
1
A
NAG
155
n
B
NAG
2
A
MAN
156
n
B
MAN
3
A
BMA
157
n
B
BMA
4
A
BMA
158
n
B
BMA
5
DManpb
b-D-mannopyranose
b-D-Manp
Man
DManpa
a-D-mannopyranose
a-D-Manp
Man
DGlcpNAcb
N-acetyl-b-D-glucopyranosamine
b-D-GlcpNAc
GlcNAc
N
RCSB
Y
PDBE
2017-03-30
REL
REL
oligosaccharide
DManpb1-3[DManpb1-6]DManpa1-4DGlcpNAcb1-4DGlcpNAcb1-
2
GMML
1.0
Glycam Condensed Sequence
WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1a_1-5][a1122h-1b_1-5]/1-1-2-3-3/a4-b1_b4-c1_c3-d1_c6-e1
2
PDB2Glycan
1.1.0
WURCS
[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}}}
2
PDB-CARE
LINUCS
C1
O4
NAG
NAG
2
1
2
O1
HO4
sing
C1
O4
MAN
NAG
3
2
2
O1
HO4
sing
C1
O3
BMA
MAN
4
3
2
O1
HO3
sing
C1
O6
BMA
MAN
5
3
2
O1
HO6
sing
n
n
n
n
n
PG4
TETRAETHYLENE GLYCOL
PEG
DI(HYDROXYETHYL)ETHER
GOL
GLYCEROL
CA
CALCIUM ION
HOH
water
3CFW
PDB
experimental model
PG4
1
3
PG4
PG4
206
A
PEG
2
4
PEG
PEG
207
A
GOL
1
5
GOL
GOL
208
A
CA
1
6
CA
CA
209
A
HOH
43
7
HOH
HOH
301
A
HOH
113
7
HOH
HOH
302
A
HOH
4
7
HOH
HOH
303
A
HOH
29
7
HOH
HOH
304
A
HOH
116
7
HOH
HOH
305
A
HOH
36
7
HOH
HOH
306
A
HOH
23
7
HOH
HOH
307
A
HOH
122
7
HOH
HOH
308
A
HOH
121
7
HOH
HOH
309
A
HOH
64
7
HOH
HOH
310
A
HOH
21
7
HOH
HOH
311
A
HOH
78
7
HOH
HOH
312
A
HOH
28
7
HOH
HOH
313
A
HOH
24
7
HOH
HOH
314
A
HOH
56
7
HOH
HOH
315
A
HOH
119
7
HOH
HOH
316
A
HOH
111
7
HOH
HOH
317
A
HOH
22
7
HOH
HOH
318
A
HOH
33
7
HOH
HOH
319
A
HOH
34
7
HOH
HOH
320
A
HOH
53
7
HOH
HOH
321
A
HOH
2
7
HOH
HOH
322
A
HOH
57
7
HOH
HOH
323
A
HOH
5
7
HOH
HOH
324
A
HOH
14
7
HOH
HOH
325
A
HOH
63
7
HOH
HOH
326
A
HOH
75
7
HOH
HOH
327
A
HOH
67
7
HOH
HOH
328
A
HOH
52
7
HOH
HOH
329
A
HOH
18
7
HOH
HOH
330
A
HOH
91
7
HOH
HOH
331
A
HOH
19
7
HOH
HOH
332
A
HOH
10
7
HOH
HOH
333
A
HOH
115
7
HOH
HOH
334
A
HOH
47
7
HOH
HOH
335
A
HOH
105
7
HOH
HOH
336
A
HOH
77
7
HOH
HOH
337
A
HOH
90
7
HOH
HOH
338
A
HOH
3
7
HOH
HOH
339
A
HOH
16
7
HOH
HOH
340
A
HOH
42
7
HOH
HOH
341
A
HOH
45
7
HOH
HOH
342
A
HOH
1
7
HOH
HOH
343
A
HOH
38
7
HOH
HOH
344
A
HOH
41
7
HOH
HOH
345
A
HOH
112
7
HOH
HOH
346
A
HOH
15
7
HOH
HOH
347
A
HOH
99
7
HOH
HOH
348
A
HOH
68
7
HOH
HOH
349
A
HOH
7
7
HOH
HOH
350
A
HOH
27
7
HOH
HOH
351
A
HOH
13
7
HOH
HOH
352
A
HOH
100
7
HOH
HOH
353
A
HOH
35
7
HOH
HOH
354
A
HOH
17
7
HOH
HOH
355
A
HOH
118
7
HOH
HOH
356
A
HOH
114
7
HOH
HOH
357
A
HOH
120
7
HOH
HOH
358
A
HOH
9
7
HOH
HOH
359
A
HOH
70
7
HOH
HOH
360
A
HOH
20
7
HOH
HOH
361
A
HOH
6
7
HOH
HOH
362
A
HOH
65
7
HOH
HOH
363
A
HOH
54
7
HOH
HOH
364
A
HOH
50
7
HOH
HOH
365
A
HOH
12
7
HOH
HOH
366
A
HOH
25
7
HOH
HOH
367
A
HOH
93
7
HOH
HOH
368
A
HOH
49
7
HOH
HOH
369
A
HOH
37
7
HOH
HOH
370
A
HOH
73
7
HOH
HOH
371
A
HOH
58
7
HOH
HOH
372
A
HOH
81
7
HOH
HOH
373
A
HOH
26
7
HOH
HOH
374
A
HOH
30
7
HOH
HOH
375
A
HOH
31
7
HOH
HOH
376
A
HOH
80
7
HOH
HOH
377
A
TRP
1
n
1
TRP
1
A
THR
2
n
2
THR
2
A
TYR
3
n
3
TYR
3
A
HIS
4
n
4
HIS
4
A
TYR
5
n
5
TYR
5
A
SER
6
n
6
SER
6
A
GLU
7
n
7
GLU
7
A
LYS
8
n
8
LYS
8
A
PRO
9
n
9
PRO
9
A
MET
10
n
10
MET
10
A
ASN
11
n
11
ASN
11
A
TRP
12
n
12
TRP
12
A
GLN
13
n
13
GLN
13
A
ARG
14
n
14
ARG
14
A
ALA
15
n
15
ALA
15
A
ARG
16
n
16
ARG
16
A
ARG
17
n
17
ARG
17
A
PHE
18
n
18
PHE
18
A
CYS
19
n
19
CYS
19
A
ARG
20
n
20
ARG
20
A
ASP
21
n
21
ASP
21
A
GLN
22
n
22
GLN
22
A
TYR
23
n
23
TYR
23
A
THR
24
n
24
THR
24
A
ASP
25
n
25
ASP
25
A
LEU
26
n
26
LEU
26
A
VAL
27
n
27
VAL
27
A
ALA
28
n
28
ALA
28
A
ILE
29
n
29
ILE
29
A
GLN
30
n
30
GLN
30
A
ASN
31
n
31
ASN
31
A
LYS
32
n
32
LYS
32
A
ALA
33
n
33
ALA
33
A
GLU
34
n
34
GLU
34
A
ILE
35
n
35
ILE
35
A
GLU
36
n
36
GLU
36
A
TYR
37
n
37
TYR
37
A
LEU
38
n
38
LEU
38
A
GLU
39
n
39
GLU
39
A
LYS
40
n
40
LYS
40
A
THR
41
n
41
THR
41
A
LEU
42
n
42
LEU
42
A
PRO
43
n
43
PRO
43
A
PHE
44
n
44
PHE
44
A
SER
45
n
45
SER
45
A
ARG
46
n
46
ARG
46
A
SER
47
n
47
SER
47
A
TYR
48
n
48
TYR
48
A
TYR
49
n
49
TYR
49
A
TRP
50
n
50
TRP
50
A
ILE
51
n
51
ILE
51
A
GLY
52
n
52
GLY
52
A
ILE
53
n
53
ILE
53
A
ARG
54
n
54
ARG
54
A
LYS
55
n
55
LYS
55
A
ILE
56
n
56
ILE
56
A
GLY
57
n
57
GLY
57
A
GLY
58
n
58
GLY
58
A
ILE
59
n
59
ILE
59
A
TRP
60
n
60
TRP
60
A
THR
61
n
61
THR
61
A
TRP
62
n
62
TRP
62
A
VAL
63
n
63
VAL
63
A
GLY
64
n
64
GLY
64
A
THR
65
n
65
THR
65
A
ASN
66
n
66
ASN
66
A
LYS
67
n
67
LYS
67
A
SER
68
n
68
SER
68
A
LEU
69
n
69
LEU
69
A
THR
70
n
70
THR
70
A
GLU
71
n
71
GLU
71
A
GLU
72
n
72
GLU
72
A
ALA
73
n
73
ALA
73
A
GLU
74
n
74
GLU
74
A
ASN
75
n
75
ASN
75
A
TRP
76
n
76
TRP
76
A
GLY
77
n
77
GLY
77
A
ASP
78
n
78
ASP
78
A
GLY
79
n
79
GLY
79
A
GLU
80
n
80
GLU
80
A
PRO
81
n
81
PRO
81
A
ASN
82
n
82
ASN
82
A
ASN
83
n
83
ASN
83
A
LYS
84
n
84
LYS
84
A
LYS
85
n
85
LYS
85
A
ASN
86
n
86
ASN
86
A
LYS
87
n
87
LYS
87
A
GLU
88
n
88
GLU
88
A
ASP
89
n
89
ASP
89
A
CYS
90
n
90
CYS
90
A
VAL
91
n
91
VAL
91
A
GLU
92
n
92
GLU
92
A
ILE
93
n
93
ILE
93
A
TYR
94
n
94
TYR
94
A
ILE
95
n
95
ILE
95
A
LYS
96
n
96
LYS
96
A
ARG
97
n
97
ARG
97
A
ASN
98
n
98
ASN
98
A
LYS
99
n
99
LYS
99
A
ASP
100
n
100
ASP
100
A
ALA
101
n
101
ALA
101
A
GLY
102
n
102
GLY
102
A
LYS
103
n
103
LYS
103
A
TRP
104
n
104
TRP
104
A
ASN
105
n
105
ASN
105
A
ASP
106
n
106
ASP
106
A
ASP
107
n
107
ASP
107
A
ALA
108
n
108
ALA
108
A
CYS
109
n
109
CYS
109
A
HIS
110
n
110
HIS
110
A
LYS
111
n
111
LYS
111
A
LEU
112
n
112
LEU
112
A
LYS
113
n
113
LYS
113
A
ALA
114
n
114
ALA
114
A
ALA
115
n
115
ALA
115
A
LEU
116
n
116
LEU
116
A
CYS
117
n
117
CYS
117
A
TYR
118
n
118
TYR
118
A
THR
119
n
119
THR
119
A
ALA
120
n
120
ALA
120
A
SER
121
n
121
SER
121
A
CYS
122
n
122
CYS
122
A
GLN
123
n
123
GLN
123
A
PRO
124
n
124
PRO
124
A
TRP
125
n
125
TRP
125
A
SER
126
n
126
SER
126
A
CYS
127
n
127
CYS
127
A
SER
128
n
128
SER
128
A
GLY
129
n
129
GLY
129
A
HIS
130
n
130
HIS
130
A
GLY
131
n
131
GLY
131
A
GLU
132
n
132
GLU
132
A
CYS
133
n
133
CYS
133
A
VAL
134
n
134
VAL
134
A
GLU
135
n
135
GLU
135
A
ILE
136
n
136
ILE
136
A
ILE
137
n
137
ILE
137
A
ASN
138
n
138
ASN
138
A
GLN
139
n
139
GLN
139
A
TYR
140
n
140
TYR
140
A
THR
141
n
141
THR
141
A
CYS
142
n
142
CYS
142
A
ASN
143
n
143
ASN
143
A
CYS
144
n
144
CYS
144
A
ASP
145
n
145
ASP
145
A
VAL
146
n
146
VAL
146
A
GLY
147
n
147
GLY
147
A
TYR
148
n
148
TYR
148
A
TYR
149
n
149
TYR
149
A
GLY
150
n
150
GLY
150
A
PRO
151
n
151
PRO
151
A
GLN
152
n
152
GLN
152
A
CYS
153
n
153
CYS
153
A
n
154
154
A
n
155
155
A
n
156
156
A
n
157
157
A
author_and_software_defined_assembly
PISA
1
monomeric
gel filtration
1610
13
9620
A
GLU
80
A
OE1
GLU
80
1_555
A
CA
209
F
CA
CA
1_555
A
ASN
82
A
OD1
ASN
82
1_555
74.7
A
GLU
80
A
OE1
GLU
80
1_555
A
CA
209
F
CA
CA
1_555
A
GLU
88
A
OE1
GLU
88
1_555
143.5
A
ASN
82
A
OD1
ASN
82
1_555
A
CA
209
F
CA
CA
1_555
A
GLU
88
A
OE1
GLU
88
1_555
71.8
A
GLU
80
A
OE1
GLU
80
1_555
A
CA
209
F
CA
CA
1_555
A
ASN
105
A
OD1
ASN
105
1_555
69.6
A
ASN
82
A
OD1
ASN
82
1_555
A
CA
209
F
CA
CA
1_555
A
ASN
105
A
OD1
ASN
105
1_555
141.8
A
GLU
88
A
OE1
GLU
88
1_555
A
CA
209
F
CA
CA
1_555
A
ASN
105
A
OD1
ASN
105
1_555
146.0
A
GLU
80
A
OE1
GLU
80
1_555
A
CA
209
F
CA
CA
1_555
A
ASP
106
A
O
ASP
106
1_555
129.0
A
ASN
82
A
OD1
ASN
82
1_555
A
CA
209
F
CA
CA
1_555
A
ASP
106
A
O
ASP
106
1_555
140.9
A
GLU
88
A
OE1
GLU
88
1_555
A
CA
209
F
CA
CA
1_555
A
ASP
106
A
O
ASP
106
1_555
74.3
A
ASN
105
A
OD1
ASN
105
1_555
A
CA
209
F
CA
CA
1_555
A
ASP
106
A
O
ASP
106
1_555
75.3
A
GLU
80
A
OE1
GLU
80
1_555
A
CA
209
F
CA
CA
1_555
A
ASP
106
A
OD1
ASP
106
1_555
71.7
A
ASN
82
A
OD1
ASN
82
1_555
A
CA
209
F
CA
CA
1_555
A
ASP
106
A
OD1
ASP
106
1_555
83.7
A
GLU
88
A
OE1
GLU
88
1_555
A
CA
209
F
CA
CA
1_555
A
ASP
106
A
OD1
ASP
106
1_555
90.5
A
ASN
105
A
OD1
ASN
105
1_555
A
CA
209
F
CA
CA
1_555
A
ASP
106
A
OD1
ASP
106
1_555
97.6
A
ASP
106
A
O
ASP
106
1_555
A
CA
209
F
CA
CA
1_555
A
ASP
106
A
OD1
ASP
106
1_555
77.8
A
GLU
80
A
OE1
GLU
80
1_555
A
CA
209
F
CA
CA
1_555
B
BMA
4
B
O3
BMA
1_555
81.8
A
ASN
82
A
OD1
ASN
82
1_555
A
CA
209
F
CA
CA
1_555
B
BMA
4
B
O3
BMA
1_555
87.9
A
GLU
88
A
OE1
GLU
88
1_555
A
CA
209
F
CA
CA
1_555
B
BMA
4
B
O3
BMA
1_555
83.0
A
ASN
105
A
OD1
ASN
105
1_555
A
CA
209
F
CA
CA
1_555
B
BMA
4
B
O3
BMA
1_555
100.0
A
ASP
106
A
O
ASP
106
1_555
A
CA
209
F
CA
CA
1_555
B
BMA
4
B
O3
BMA
1_555
69.0
A
ASP
106
A
OD1
ASP
106
1_555
A
CA
209
F
CA
CA
1_555
B
BMA
4
B
O3
BMA
1_555
10.3
A
GLU
80
A
OE1
GLU
80
1_555
A
CA
209
F
CA
CA
1_555
B
BMA
4
B
O4
BMA
1_555
80.2
A
ASN
82
A
OD1
ASN
82
1_555
A
CA
209
F
CA
CA
1_555
B
BMA
4
B
O4
BMA
1_555
90.4
A
GLU
88
A
OE1
GLU
88
1_555
A
CA
209
F
CA
CA
1_555
B
BMA
4
B
O4
BMA
1_555
85.9
A
ASN
105
A
OD1
ASN
105
1_555
A
CA
209
F
CA
CA
1_555
B
BMA
4
B
O4
BMA
1_555
96.7
A
ASP
106
A
O
ASP
106
1_555
A
CA
209
F
CA
CA
1_555
B
BMA
4
B
O4
BMA
1_555
68.3
A
ASP
106
A
OD1
ASP
106
1_555
A
CA
209
F
CA
CA
1_555
B
BMA
4
B
O4
BMA
1_555
9.7
B
BMA
4
B
O3
BMA
1_555
A
CA
209
F
CA
CA
1_555
B
BMA
4
B
O4
BMA
1_555
3.4
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
HIS
4
A
N
HIS
4
A
O
CYS
117
A
O
CYS
117
A
O
TYR
118
A
O
TYR
118
A
N
ASP
25
A
N
ASP
25
A
N
HIS
4
A
N
HIS
4
A
O
CYS
117
A
O
CYS
117
A
O
ALA
114
A
O
ALA
114
A
N
TRP
50
A
N
TRP
50
A
N
TYR
49
A
N
TYR
49
A
O
ILE
93
A
O
ILE
93
A
N
CYS
90
A
N
CYS
90
A
O
ASP
107
A
O
ASP
107
A
N
ARG
54
A
N
ARG
54
A
O
THR
61
A
O
THR
61
A
N
TRP
62
A
N
TRP
62
A
O
LYS
67
A
O
LYS
67
A
N
VAL
134
A
N
VAL
134
A
O
THR
141
A
O
THR
141
1
A
GLN
154
A
GLN
154
1
Y
1
A
PHE
155
A
PHE
155
1
Y
1
A
VAL
156
A
VAL
156
1
Y
1
A
ILE
157
A
ILE
157
1
Y
1
B
C1
MAN
3
WRONG HAND
1
B
C1
BMA
4
WRONG HAND
1
B
C1
BMA
5
WRONG HAND
1
A
A
SG
SG
CYS
CYS
127
142
1.30
1
A
A
CB
SG
CYS
CYS
127
142
2.17
1
A
A
SG
CB
CYS
CYS
127
142
2.19
1
8.92
1.20
111.50
120.42
A
A
A
CB
CA
C
CYS
CYS
CYS
127
127
127
N
1
-25.29
2.70
111.00
85.71
A
A
A
N
CA
C
CYS
CYS
CYS
127
127
127
N
1
18.29
2.70
111.00
129.29
A
A
A
N
CA
C
SER
SER
SER
128
128
128
N
1
A
TYR
23
-131.96
-141.51
1
A
TYR
48
63.84
-157.03
1
A
ASN
75
-144.02
41.57
1
A
TRP
125
114.47
-0.34
1
A
SER
128
-65.88
58.67
1
A
GLN
139
-162.98
-157.07
1
A
ASP
145
-79.02
-130.98
0.2311
0.2018
0.2034
1.940
31.697
1034
20673
5.00
99.90
0.23
1
FREE R-VALUE
2.03
MOLECULAR REPLACEMENT
21.87
0.90
1.11
3CFW
1.940
31.697
77
1422
88
0
1257
0.007
1403
0.900
1881
9.192
1112
0.053
192
0.005
230
0.2290
0.2178
2.0426
147
2787
100.00
0.2688
0.2221
2.1705
146
2780
100.00
0.2451
0.2162
2.3381
147
2793
100.00
0.2419
0.2108
2.5733
146
2780
100.00
0.2632
0.2185
2.9454
148
2800
100.00
0.2206
0.2016
3.7100
148
2821
100.00
0.2086
0.1808
31.7009
152
2878
100.00
1.94
31.7
5VC1
20674
1
16.82
5.5
99.87
refinement
PHENIX
(1.11.1_2575: ???)
model building
Coot
data scaling
XDS
phasing
PHENIX
data reduction
XDS
N
Crystal structure of L-selectin lectin/EGF domains
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
7
N
N
A
ASN
11
A
ASN
11
HELX_P
A
TYR
23
A
TYR
23
1
AA1
13
A
ASN
31
A
ASN
31
HELX_P
A
LEU
42
A
LEU
42
1
AA2
12
A
ASN
83
A
ASN
83
HELX_P
A
LYS
87
A
LYS
87
5
AA3
5
disulf
2.062
A
CYS
19
A
SG
CYS
19
1_555
A
CYS
117
A
SG
CYS
117
1_555
disulf
2.042
A
CYS
90
A
SG
CYS
90
1_555
A
CYS
109
A
SG
CYS
109
1_555
disulf
2.042
A
CYS
122
A
SG
CYS
122
1_555
A
CYS
133
A
SG
CYS
133
1_555
disulf
2.031
A
CYS
144
A
SG
CYS
144
1_555
A
CYS
153
A
SG
CYS
153
1_555
covale
1.415
one
N-Glycosylation
A
ASN
66
A
ND2
ASN
66
1_555
B
NAG
1
B
C1
NAG
1_555
covale
1.398
both
B
NAG
1
B
O4
NAG
1_555
B
NAG
2
B
C1
NAG
1_555
covale
1.408
both
B
NAG
2
B
O4
NAG
1_555
B
MAN
3
B
C1
MAN
1_555
covale
1.450
both
B
MAN
3
B
O3
MAN
1_555
B
BMA
4
B
C1
BMA
1_555
covale
1.436
both
B
MAN
3
B
O6
MAN
1_555
B
BMA
5
B
C1
BMA
1_555
metalc
2.481
A
GLU
80
A
OE1
GLU
80
1_555
A
CA
209
F
CA
CA
1_555
metalc
2.469
A
ASN
82
A
OD1
ASN
82
1_555
A
CA
209
F
CA
CA
1_555
metalc
2.382
A
GLU
88
A
OE1
GLU
88
1_555
A
CA
209
F
CA
CA
1_555
metalc
2.391
A
ASN
105
A
OD1
ASN
105
1_555
A
CA
209
F
CA
CA
1_555
metalc
2.483
A
ASP
106
A
O
ASP
106
1_555
A
CA
209
F
CA
CA
1_555
metalc
2.382
A
ASP
106
A
OD1
ASP
106
1_555
A
CA
209
F
CA
CA
1_555
metalc
2.492
A
CA
209
F
CA
CA
24_555
B
BMA
4
B
O3
BMA
1_555
metalc
2.601
A
CA
209
F
CA
CA
24_555
B
BMA
4
B
O4
BMA
1_555
CELL ADHESION
L-selectin; glycoprotein, cell adhesion
A
GLU
80
A
GLU
80
1
A
PRO
81
A
PRO
81
-2.43
LYAM1_HUMAN
UNP
1
39
P14151
WTYHYSEKPMNWQRARRFCRDNYTDLVAIQNKAEIEYLEKTLPFSRSYYWIGIRKIGGIWTWVGTNKSLTEEAENWGDGE
PNNKKNKEDCVEIYIKRNKDAGKWNDDACHKLKAALCYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQFVI
39
195
5VC1
1
157
P14151
A
1
1
157
1
ASN
engineered mutation
GLN
22
5VC1
A
P14151
UNP
60
22
1
ASN
engineered mutation
GLN
139
5VC1
A
P14151
UNP
177
139
3
5
3
2
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
2
A
THR
2
A
TYR
5
A
TYR
5
A
ALA
114
A
ALA
114
A
THR
119
A
THR
119
A
ASP
25
A
ASP
25
A
LEU
26
A
LEU
26
A
THR
2
A
THR
2
A
TYR
5
A
TYR
5
A
ALA
114
A
ALA
114
A
THR
119
A
THR
119
A
TYR
49
A
TYR
49
A
TRP
50
A
TRP
50
A
CYS
90
A
CYS
90
A
ILE
93
A
ILE
93
A
TRP
104
A
TRP
104
A
ASP
107
A
ASP
107
A
ILE
53
A
ILE
53
A
ILE
56
A
ILE
56
A
ILE
59
A
ILE
59
A
TRP
62
A
TRP
62
A
LYS
67
A
LYS
67
A
SER
68
A
SER
68
A
GLU
132
A
GLU
132
A
ILE
136
A
ILE
136
A
GLN
139
A
GLN
139
A
ASN
143
A
ASN
143
197
I 2 3