0.008432 0.000000 0.000000 0.000000 0.008432 0.000000 0.000000 0.000000 0.008432 0.00000 0.00000 0.00000 Wedepohl, S. Dernedde, J. Vahedi-Faridi, A. Tauber, R. Saenger, W. Bulut, H. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 24 90.00 90.00 90.00 118.598 118.598 118.598 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H12 O6 180.156 beta-D-mannopyranose beta-D-mannose; D-mannose; mannose D-saccharide, beta linking Ca 2 40.078 CALCIUM ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C3 H8 O3 92.094 GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL non-polymer C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C6 H12 O6 180.156 alpha-D-mannopyranose alpha-D-mannose; D-mannose; mannose D-saccharide, alpha linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C4 H10 O3 106.120 DI(HYDROXYETHYL)ETHER non-polymer C8 H18 O5 194.226 TETRAETHYLENE GLYCOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 R C N 75 S C N 76 S C N 77 S C N 78 R C N 79 N C N 80 N O N 81 N O N 82 N O N 83 N O N 84 N O N 85 N O N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N CA N 99 N N N 100 R C N 101 N C N 102 N O N 103 N C N 104 N S N 105 N O N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N N N 114 S C N 115 N C N 116 N O N 117 N C N 118 N C N 119 N C N 120 N O N 121 N N N 122 N O N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N N N 134 S C N 135 N C N 136 N O N 137 N C N 138 N C N 139 N C N 140 N O N 141 N O N 142 N O N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N N N 153 N C N 154 N C N 155 N O N 156 N O N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N C N 163 N O N 164 N C N 165 N O N 166 N C N 167 N O N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N N N 177 S C N 178 N C N 179 N O N 180 N C Y 181 N C Y 182 N N Y 183 N C Y 184 N C Y 185 N N N 186 N O N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N O N 198 N H N 199 N H N 200 N N N 201 S C N 202 N C N 203 N O N 204 S C N 205 N C N 206 N C N 207 N C N 208 N O N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N N N 223 S C N 224 N C N 225 N O N 226 N C N 227 N C N 228 N C N 229 N C N 230 N O N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N N N 245 S C N 246 N C N 247 N O N 248 N C N 249 N C N 250 N C N 251 N C N 252 N N N 253 N O N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 S C N 270 S C N 271 S C N 272 S C N 273 R C N 274 N C N 275 N O N 276 N O N 277 N O N 278 N O N 279 N O N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N N N 294 S C N 295 N C N 296 N O N 297 N C N 298 N C N 299 N S N 300 N C N 301 N O N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 R C N 314 R C N 315 R C N 316 S C N 317 R C N 318 N C N 319 N C N 320 N C N 321 N N N 322 N O N 323 N O N 324 N O N 325 N O N 326 N O N 327 N O N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N C N 344 N O N 345 N C N 346 N O N 347 N C N 348 N C N 349 N O N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N O N 361 N C N 362 N C N 363 N O N 364 N C N 365 N C N 366 N O N 367 N C N 368 N C N 369 N O N 370 N C N 371 N C N 372 N O N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N N N 392 S C N 393 N C N 394 N O N 395 N C Y 396 N C Y 397 N C Y 398 N C Y 399 N C Y 400 N C Y 401 N C N 402 N O N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N N N 415 S C N 416 N C N 417 N O N 418 N C N 419 N C N 420 N C N 421 N O N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N N N 432 S C N 433 N C N 434 N O N 435 N C N 436 N O N 437 N O N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N N N 446 S C N 447 N C N 448 N O N 449 R C N 450 N O N 451 N C N 452 N O N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N H N 462 N N N 463 S C N 464 N C N 465 N O N 466 N C Y 467 N C Y 468 N C Y 469 N C Y 470 N N Y 471 N C Y 472 N C Y 473 N C Y 474 N C Y 475 N C N 476 N O N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N N N 490 S C N 491 N C N 492 N O N 493 N C Y 494 N C Y 495 N C Y 496 N C Y 497 N C Y 498 N C Y 499 N C N 500 N O N 501 N O N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N N N 514 S C N 515 N C N 516 N O N 517 N C N 518 N C N 519 N C N 520 N O N 521 N H N 522 N H N 523 N H N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N doub N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N doub N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N doub N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N doub N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N doub N 173 N sing N 174 N sing N 175 N sing N 176 N sing Y 177 N sing Y 178 N doub Y 179 N doub N 180 N sing Y 181 N sing N 182 N sing Y 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N doub N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N doub N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N doub N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N doub N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N doub N 381 N sing N 382 N sing N 383 N sing N 384 N sing Y 385 N doub Y 386 N sing Y 387 N sing N 388 N sing Y 389 N doub N 390 N sing Y 391 N doub N 392 N sing Y 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N doub N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N doub N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N doub N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N doub N 450 N sing N 451 N sing N 452 N sing N 453 N sing Y 454 N doub Y 455 N sing Y 456 N sing N 457 N sing Y 458 N doub Y 459 N sing Y 460 N sing N 461 N sing Y 462 N sing Y 463 N doub N 464 N sing Y 465 N doub N 466 N sing Y 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N doub N 478 N sing N 479 N sing N 480 N sing N 481 N sing Y 482 N doub Y 483 N sing Y 484 N sing N 485 N sing Y 486 N doub N 487 N sing Y 488 N doub N 489 N sing Y 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N doub N 502 N sing N 503 N sing N 504 N sing N 505 N sing N 506 N sing N 507 N sing N 508 N sing N 509 N sing N 510 N sing N 511 N sing N 512 N sing GE Chembiochem 1439-7633 18 1338 1345 10.1002/cbic.201700220 28489325 Reducing Macro- and Microheterogeneity of N-Glycans Enables the Crystal Structure of the Lectin and EGF-Like Domains of Human L-Selectin To Be Solved at 1.9 angstrom Resolution. 2017 10.2210/pdb5vc1/pdb pdb_00005vc1 MAN B 3 HAS WRONG CHIRALITY AT ATOM C1 BMA B 4 HAS WRONG CHIRALITY AT ATOM C1 BMA B 5 HAS WRONG CHIRALITY AT ATOM C1 100 1 CCD 2017-02-25 RAYONIX MX-225 SINGLE WAVELENGTH M x-ray 1 0.9184 1.0 14.1 BESSY 0.9184 SYNCHROTRON BESSY BEAMLINE 14.1 18412.682 L-selectin UNP residues 39-195 N22Q, N139Q 1 man polymer 910.823 beta-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 194.226 TETRAETHYLENE GLYCOL 1 man non-polymer 106.120 DI(HYDROXYETHYL)ETHER 1 man non-polymer 92.094 GLYCEROL 1 syn non-polymer 40.078 CALCIUM ION 1 syn non-polymer 18.015 water 77 nat water CD62 antigen-like family member L,Leukocyte adhesion molecule 1,LAM-1,Leukocyte surface antigen Leu-8,Leukocyte-endothelial cell adhesion molecule 1,LECAM1,Lymph node homing receptor,TQ1,gp90-MEL no no WTYHYSEKPMNWQRARRFCRDQYTDLVAIQNKAEIEYLEKTLPFSRSYYWIGIRKIGGIWTWVGTNKSLTEEAENWGDGE PNNKKNKEDCVEIYIKRNKDAGKWNDDACHKLKAALCYTASCQPWSCSGHGECVEIINQYTCNCDVGYYGPQCQFVI WTYHYSEKPMNWQRARRFCRDQYTDLVAIQNKAEIEYLEKTLPFSRSYYWIGIRKIGGIWTWVGTNKSLTEEAENWGDGE PNNKKNKEDCVEIYIKRNKDAGKWNDDACHKLKAALCYTASCQPWSCSGHGECVEIINQYTCNCDVGYYGPQCQFVI A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human Human sample 1 157 SELL, LNHR, LYAM1 9606 Homo sapiens HEK293F 9606 Homo sapiens Biological sequence 1 3.78 67.45 VAPOR DIFFUSION, SITTING DROP 7.5 100 mM sodium cacodylate pH 7.5, 200 mM calcium acetate, 40% (v/v) PEG 600 293.0 citation pdbx_audit_support reflns_shell atom_site chem_comp database_PDB_caveat entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_struct_conn_angle pdbx_validate_chiral struct_asym struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn repository Initial release Carbohydrate remediation repository Remediation Database references Author supporting evidence Data collection Advisory Atomic model Data collection Derived calculations Structure summary Data collection Database references Derived calculations Refinement description Structure summary 1 0 2017-06-14 1 1 2017-07-12 1 2 2019-10-16 2 0 2020-07-29 2 1 2024-01-17 _citation.country _citation.journal_volume _citation.page_first _citation.page_last _pdbx_audit_support.funding_organization _atom_site.auth_asym_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_entity_id _chem_comp.name _chem_comp.type _database_PDB_caveat.text _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_seq_id _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_symmetry _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag Germany German Research Foundation SFB-449 A NAG 154 n B NAG 1 A NAG 155 n B NAG 2 A MAN 156 n B MAN 3 A BMA 157 n B BMA 4 A BMA 158 n B BMA 5 DManpb b-D-mannopyranose b-D-Manp Man DManpa a-D-mannopyranose a-D-Manp Man DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc N RCSB Y PDBE 2017-03-30 REL REL oligosaccharide DManpb1-3[DManpb1-6]DManpa1-4DGlcpNAcb1-4DGlcpNAcb1- 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/3,5,4/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1a_1-5][a1122h-1b_1-5]/1-1-2-3-3/a4-b1_b4-c1_c3-d1_c6-e1 2 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{}}}}} 2 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 2 O1 HO4 sing C1 O4 MAN NAG 3 2 2 O1 HO4 sing C1 O3 BMA MAN 4 3 2 O1 HO3 sing C1 O6 BMA MAN 5 3 2 O1 HO6 sing n n n n n PG4 TETRAETHYLENE GLYCOL PEG DI(HYDROXYETHYL)ETHER GOL GLYCEROL CA CALCIUM ION HOH water 3CFW PDB experimental model PG4 1 3 PG4 PG4 206 A PEG 2 4 PEG PEG 207 A GOL 1 5 GOL GOL 208 A CA 1 6 CA CA 209 A HOH 43 7 HOH HOH 301 A HOH 113 7 HOH HOH 302 A HOH 4 7 HOH HOH 303 A HOH 29 7 HOH HOH 304 A HOH 116 7 HOH HOH 305 A HOH 36 7 HOH HOH 306 A HOH 23 7 HOH HOH 307 A HOH 122 7 HOH HOH 308 A HOH 121 7 HOH HOH 309 A HOH 64 7 HOH HOH 310 A HOH 21 7 HOH HOH 311 A HOH 78 7 HOH HOH 312 A HOH 28 7 HOH HOH 313 A HOH 24 7 HOH HOH 314 A HOH 56 7 HOH HOH 315 A HOH 119 7 HOH HOH 316 A HOH 111 7 HOH HOH 317 A HOH 22 7 HOH HOH 318 A HOH 33 7 HOH HOH 319 A HOH 34 7 HOH HOH 320 A HOH 53 7 HOH HOH 321 A HOH 2 7 HOH HOH 322 A HOH 57 7 HOH HOH 323 A HOH 5 7 HOH HOH 324 A HOH 14 7 HOH HOH 325 A HOH 63 7 HOH HOH 326 A HOH 75 7 HOH HOH 327 A HOH 67 7 HOH HOH 328 A HOH 52 7 HOH HOH 329 A HOH 18 7 HOH HOH 330 A HOH 91 7 HOH HOH 331 A HOH 19 7 HOH HOH 332 A HOH 10 7 HOH HOH 333 A HOH 115 7 HOH HOH 334 A HOH 47 7 HOH HOH 335 A HOH 105 7 HOH HOH 336 A HOH 77 7 HOH HOH 337 A HOH 90 7 HOH HOH 338 A HOH 3 7 HOH HOH 339 A HOH 16 7 HOH HOH 340 A HOH 42 7 HOH HOH 341 A HOH 45 7 HOH HOH 342 A HOH 1 7 HOH HOH 343 A HOH 38 7 HOH HOH 344 A HOH 41 7 HOH HOH 345 A HOH 112 7 HOH HOH 346 A HOH 15 7 HOH HOH 347 A HOH 99 7 HOH HOH 348 A HOH 68 7 HOH HOH 349 A HOH 7 7 HOH HOH 350 A HOH 27 7 HOH HOH 351 A HOH 13 7 HOH HOH 352 A HOH 100 7 HOH HOH 353 A HOH 35 7 HOH HOH 354 A HOH 17 7 HOH HOH 355 A HOH 118 7 HOH HOH 356 A HOH 114 7 HOH HOH 357 A HOH 120 7 HOH HOH 358 A HOH 9 7 HOH HOH 359 A HOH 70 7 HOH HOH 360 A HOH 20 7 HOH HOH 361 A HOH 6 7 HOH HOH 362 A HOH 65 7 HOH HOH 363 A HOH 54 7 HOH HOH 364 A HOH 50 7 HOH HOH 365 A HOH 12 7 HOH HOH 366 A HOH 25 7 HOH HOH 367 A HOH 93 7 HOH HOH 368 A HOH 49 7 HOH HOH 369 A HOH 37 7 HOH HOH 370 A HOH 73 7 HOH HOH 371 A HOH 58 7 HOH HOH 372 A HOH 81 7 HOH HOH 373 A HOH 26 7 HOH HOH 374 A HOH 30 7 HOH HOH 375 A HOH 31 7 HOH HOH 376 A HOH 80 7 HOH HOH 377 A TRP 1 n 1 TRP 1 A THR 2 n 2 THR 2 A TYR 3 n 3 TYR 3 A HIS 4 n 4 HIS 4 A TYR 5 n 5 TYR 5 A SER 6 n 6 SER 6 A GLU 7 n 7 GLU 7 A LYS 8 n 8 LYS 8 A PRO 9 n 9 PRO 9 A MET 10 n 10 MET 10 A ASN 11 n 11 ASN 11 A TRP 12 n 12 TRP 12 A GLN 13 n 13 GLN 13 A ARG 14 n 14 ARG 14 A ALA 15 n 15 ALA 15 A ARG 16 n 16 ARG 16 A ARG 17 n 17 ARG 17 A PHE 18 n 18 PHE 18 A CYS 19 n 19 CYS 19 A ARG 20 n 20 ARG 20 A ASP 21 n 21 ASP 21 A GLN 22 n 22 GLN 22 A TYR 23 n 23 TYR 23 A THR 24 n 24 THR 24 A ASP 25 n 25 ASP 25 A LEU 26 n 26 LEU 26 A VAL 27 n 27 VAL 27 A ALA 28 n 28 ALA 28 A ILE 29 n 29 ILE 29 A GLN 30 n 30 GLN 30 A ASN 31 n 31 ASN 31 A LYS 32 n 32 LYS 32 A ALA 33 n 33 ALA 33 A GLU 34 n 34 GLU 34 A ILE 35 n 35 ILE 35 A GLU 36 n 36 GLU 36 A TYR 37 n 37 TYR 37 A LEU 38 n 38 LEU 38 A GLU 39 n 39 GLU 39 A LYS 40 n 40 LYS 40 A THR 41 n 41 THR 41 A LEU 42 n 42 LEU 42 A PRO 43 n 43 PRO 43 A PHE 44 n 44 PHE 44 A SER 45 n 45 SER 45 A ARG 46 n 46 ARG 46 A SER 47 n 47 SER 47 A TYR 48 n 48 TYR 48 A TYR 49 n 49 TYR 49 A TRP 50 n 50 TRP 50 A ILE 51 n 51 ILE 51 A GLY 52 n 52 GLY 52 A ILE 53 n 53 ILE 53 A ARG 54 n 54 ARG 54 A LYS 55 n 55 LYS 55 A ILE 56 n 56 ILE 56 A GLY 57 n 57 GLY 57 A GLY 58 n 58 GLY 58 A ILE 59 n 59 ILE 59 A TRP 60 n 60 TRP 60 A THR 61 n 61 THR 61 A TRP 62 n 62 TRP 62 A VAL 63 n 63 VAL 63 A GLY 64 n 64 GLY 64 A THR 65 n 65 THR 65 A ASN 66 n 66 ASN 66 A LYS 67 n 67 LYS 67 A SER 68 n 68 SER 68 A LEU 69 n 69 LEU 69 A THR 70 n 70 THR 70 A GLU 71 n 71 GLU 71 A GLU 72 n 72 GLU 72 A ALA 73 n 73 ALA 73 A GLU 74 n 74 GLU 74 A ASN 75 n 75 ASN 75 A TRP 76 n 76 TRP 76 A GLY 77 n 77 GLY 77 A ASP 78 n 78 ASP 78 A GLY 79 n 79 GLY 79 A GLU 80 n 80 GLU 80 A PRO 81 n 81 PRO 81 A ASN 82 n 82 ASN 82 A ASN 83 n 83 ASN 83 A LYS 84 n 84 LYS 84 A LYS 85 n 85 LYS 85 A ASN 86 n 86 ASN 86 A LYS 87 n 87 LYS 87 A GLU 88 n 88 GLU 88 A ASP 89 n 89 ASP 89 A CYS 90 n 90 CYS 90 A VAL 91 n 91 VAL 91 A GLU 92 n 92 GLU 92 A ILE 93 n 93 ILE 93 A TYR 94 n 94 TYR 94 A ILE 95 n 95 ILE 95 A LYS 96 n 96 LYS 96 A ARG 97 n 97 ARG 97 A ASN 98 n 98 ASN 98 A LYS 99 n 99 LYS 99 A ASP 100 n 100 ASP 100 A ALA 101 n 101 ALA 101 A GLY 102 n 102 GLY 102 A LYS 103 n 103 LYS 103 A TRP 104 n 104 TRP 104 A ASN 105 n 105 ASN 105 A ASP 106 n 106 ASP 106 A ASP 107 n 107 ASP 107 A ALA 108 n 108 ALA 108 A CYS 109 n 109 CYS 109 A HIS 110 n 110 HIS 110 A LYS 111 n 111 LYS 111 A LEU 112 n 112 LEU 112 A LYS 113 n 113 LYS 113 A ALA 114 n 114 ALA 114 A ALA 115 n 115 ALA 115 A LEU 116 n 116 LEU 116 A CYS 117 n 117 CYS 117 A TYR 118 n 118 TYR 118 A THR 119 n 119 THR 119 A ALA 120 n 120 ALA 120 A SER 121 n 121 SER 121 A CYS 122 n 122 CYS 122 A GLN 123 n 123 GLN 123 A PRO 124 n 124 PRO 124 A TRP 125 n 125 TRP 125 A SER 126 n 126 SER 126 A CYS 127 n 127 CYS 127 A SER 128 n 128 SER 128 A GLY 129 n 129 GLY 129 A HIS 130 n 130 HIS 130 A GLY 131 n 131 GLY 131 A GLU 132 n 132 GLU 132 A CYS 133 n 133 CYS 133 A VAL 134 n 134 VAL 134 A GLU 135 n 135 GLU 135 A ILE 136 n 136 ILE 136 A ILE 137 n 137 ILE 137 A ASN 138 n 138 ASN 138 A GLN 139 n 139 GLN 139 A TYR 140 n 140 TYR 140 A THR 141 n 141 THR 141 A CYS 142 n 142 CYS 142 A ASN 143 n 143 ASN 143 A CYS 144 n 144 CYS 144 A ASP 145 n 145 ASP 145 A VAL 146 n 146 VAL 146 A GLY 147 n 147 GLY 147 A TYR 148 n 148 TYR 148 A TYR 149 n 149 TYR 149 A GLY 150 n 150 GLY 150 A PRO 151 n 151 PRO 151 A GLN 152 n 152 GLN 152 A CYS 153 n 153 CYS 153 A n 154 154 A n 155 155 A n 156 156 A n 157 157 A author_and_software_defined_assembly PISA 1 monomeric gel filtration 1610 13 9620 A GLU 80 A OE1 GLU 80 1_555 A CA 209 F CA CA 1_555 A ASN 82 A OD1 ASN 82 1_555 74.7 A GLU 80 A OE1 GLU 80 1_555 A CA 209 F CA CA 1_555 A GLU 88 A OE1 GLU 88 1_555 143.5 A ASN 82 A OD1 ASN 82 1_555 A CA 209 F CA CA 1_555 A GLU 88 A OE1 GLU 88 1_555 71.8 A GLU 80 A OE1 GLU 80 1_555 A CA 209 F CA CA 1_555 A ASN 105 A OD1 ASN 105 1_555 69.6 A ASN 82 A OD1 ASN 82 1_555 A CA 209 F CA CA 1_555 A ASN 105 A OD1 ASN 105 1_555 141.8 A GLU 88 A OE1 GLU 88 1_555 A CA 209 F CA CA 1_555 A ASN 105 A OD1 ASN 105 1_555 146.0 A GLU 80 A OE1 GLU 80 1_555 A CA 209 F CA CA 1_555 A ASP 106 A O ASP 106 1_555 129.0 A ASN 82 A OD1 ASN 82 1_555 A CA 209 F CA CA 1_555 A ASP 106 A O ASP 106 1_555 140.9 A GLU 88 A OE1 GLU 88 1_555 A CA 209 F CA CA 1_555 A ASP 106 A O ASP 106 1_555 74.3 A ASN 105 A OD1 ASN 105 1_555 A CA 209 F CA CA 1_555 A ASP 106 A O ASP 106 1_555 75.3 A GLU 80 A OE1 GLU 80 1_555 A CA 209 F CA CA 1_555 A ASP 106 A OD1 ASP 106 1_555 71.7 A ASN 82 A OD1 ASN 82 1_555 A CA 209 F CA CA 1_555 A ASP 106 A OD1 ASP 106 1_555 83.7 A GLU 88 A OE1 GLU 88 1_555 A CA 209 F CA CA 1_555 A ASP 106 A OD1 ASP 106 1_555 90.5 A ASN 105 A OD1 ASN 105 1_555 A CA 209 F CA CA 1_555 A ASP 106 A OD1 ASP 106 1_555 97.6 A ASP 106 A O ASP 106 1_555 A CA 209 F CA CA 1_555 A ASP 106 A OD1 ASP 106 1_555 77.8 A GLU 80 A OE1 GLU 80 1_555 A CA 209 F CA CA 1_555 B BMA 4 B O3 BMA 1_555 81.8 A ASN 82 A OD1 ASN 82 1_555 A CA 209 F CA CA 1_555 B BMA 4 B O3 BMA 1_555 87.9 A GLU 88 A OE1 GLU 88 1_555 A CA 209 F CA CA 1_555 B BMA 4 B O3 BMA 1_555 83.0 A ASN 105 A OD1 ASN 105 1_555 A CA 209 F CA CA 1_555 B BMA 4 B O3 BMA 1_555 100.0 A ASP 106 A O ASP 106 1_555 A CA 209 F CA CA 1_555 B BMA 4 B O3 BMA 1_555 69.0 A ASP 106 A OD1 ASP 106 1_555 A CA 209 F CA CA 1_555 B BMA 4 B O3 BMA 1_555 10.3 A GLU 80 A OE1 GLU 80 1_555 A CA 209 F CA CA 1_555 B BMA 4 B O4 BMA 1_555 80.2 A ASN 82 A OD1 ASN 82 1_555 A CA 209 F CA CA 1_555 B BMA 4 B O4 BMA 1_555 90.4 A GLU 88 A OE1 GLU 88 1_555 A CA 209 F CA CA 1_555 B BMA 4 B O4 BMA 1_555 85.9 A ASN 105 A OD1 ASN 105 1_555 A CA 209 F CA CA 1_555 B BMA 4 B O4 BMA 1_555 96.7 A ASP 106 A O ASP 106 1_555 A CA 209 F CA CA 1_555 B BMA 4 B O4 BMA 1_555 68.3 A ASP 106 A OD1 ASP 106 1_555 A CA 209 F CA CA 1_555 B BMA 4 B O4 BMA 1_555 9.7 B BMA 4 B O3 BMA 1_555 A CA 209 F CA CA 1_555 B BMA 4 B O4 BMA 1_555 3.4 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N HIS 4 A N HIS 4 A O CYS 117 A O CYS 117 A O TYR 118 A O TYR 118 A N ASP 25 A N ASP 25 A N HIS 4 A N HIS 4 A O CYS 117 A O CYS 117 A O ALA 114 A O ALA 114 A N TRP 50 A N TRP 50 A N TYR 49 A N TYR 49 A O ILE 93 A O ILE 93 A N CYS 90 A N CYS 90 A O ASP 107 A O ASP 107 A N ARG 54 A N ARG 54 A O THR 61 A O THR 61 A N TRP 62 A N TRP 62 A O LYS 67 A O LYS 67 A N VAL 134 A N VAL 134 A O THR 141 A O THR 141 1 A GLN 154 A GLN 154 1 Y 1 A PHE 155 A PHE 155 1 Y 1 A VAL 156 A VAL 156 1 Y 1 A ILE 157 A ILE 157 1 Y 1 B C1 MAN 3 WRONG HAND 1 B C1 BMA 4 WRONG HAND 1 B C1 BMA 5 WRONG HAND 1 A A SG SG CYS CYS 127 142 1.30 1 A A CB SG CYS CYS 127 142 2.17 1 A A SG CB CYS CYS 127 142 2.19 1 8.92 1.20 111.50 120.42 A A A CB CA C CYS CYS CYS 127 127 127 N 1 -25.29 2.70 111.00 85.71 A A A N CA C CYS CYS CYS 127 127 127 N 1 18.29 2.70 111.00 129.29 A A A N CA C SER SER SER 128 128 128 N 1 A TYR 23 -131.96 -141.51 1 A TYR 48 63.84 -157.03 1 A ASN 75 -144.02 41.57 1 A TRP 125 114.47 -0.34 1 A SER 128 -65.88 58.67 1 A GLN 139 -162.98 -157.07 1 A ASP 145 -79.02 -130.98 0.2311 0.2018 0.2034 1.940 31.697 1034 20673 5.00 99.90 0.23 1 FREE R-VALUE 2.03 MOLECULAR REPLACEMENT 21.87 0.90 1.11 3CFW 1.940 31.697 77 1422 88 0 1257 0.007 1403 0.900 1881 9.192 1112 0.053 192 0.005 230 0.2290 0.2178 2.0426 147 2787 100.00 0.2688 0.2221 2.1705 146 2780 100.00 0.2451 0.2162 2.3381 147 2793 100.00 0.2419 0.2108 2.5733 146 2780 100.00 0.2632 0.2185 2.9454 148 2800 100.00 0.2206 0.2016 3.7100 148 2821 100.00 0.2086 0.1808 31.7009 152 2878 100.00 1.94 31.7 5VC1 20674 1 16.82 5.5 99.87 refinement PHENIX (1.11.1_2575: ???) model building Coot data scaling XDS phasing PHENIX data reduction XDS N Crystal structure of L-selectin lectin/EGF domains 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 7 N N A ASN 11 A ASN 11 HELX_P A TYR 23 A TYR 23 1 AA1 13 A ASN 31 A ASN 31 HELX_P A LEU 42 A LEU 42 1 AA2 12 A ASN 83 A ASN 83 HELX_P A LYS 87 A LYS 87 5 AA3 5 disulf 2.062 A CYS 19 A SG CYS 19 1_555 A CYS 117 A SG CYS 117 1_555 disulf 2.042 A CYS 90 A SG CYS 90 1_555 A CYS 109 A SG CYS 109 1_555 disulf 2.042 A CYS 122 A SG CYS 122 1_555 A CYS 133 A SG CYS 133 1_555 disulf 2.031 A CYS 144 A SG CYS 144 1_555 A CYS 153 A SG CYS 153 1_555 covale 1.415 one N-Glycosylation A ASN 66 A ND2 ASN 66 1_555 B NAG 1 B C1 NAG 1_555 covale 1.398 both B NAG 1 B O4 NAG 1_555 B NAG 2 B C1 NAG 1_555 covale 1.408 both B NAG 2 B O4 NAG 1_555 B MAN 3 B C1 MAN 1_555 covale 1.450 both B MAN 3 B O3 MAN 1_555 B BMA 4 B C1 BMA 1_555 covale 1.436 both B MAN 3 B O6 MAN 1_555 B BMA 5 B C1 BMA 1_555 metalc 2.481 A GLU 80 A OE1 GLU 80 1_555 A CA 209 F CA CA 1_555 metalc 2.469 A ASN 82 A OD1 ASN 82 1_555 A CA 209 F CA CA 1_555 metalc 2.382 A GLU 88 A OE1 GLU 88 1_555 A CA 209 F CA CA 1_555 metalc 2.391 A ASN 105 A OD1 ASN 105 1_555 A CA 209 F CA CA 1_555 metalc 2.483 A ASP 106 A O ASP 106 1_555 A CA 209 F CA CA 1_555 metalc 2.382 A ASP 106 A OD1 ASP 106 1_555 A CA 209 F CA CA 1_555 metalc 2.492 A CA 209 F CA CA 24_555 B BMA 4 B O3 BMA 1_555 metalc 2.601 A CA 209 F CA CA 24_555 B BMA 4 B O4 BMA 1_555 CELL ADHESION L-selectin; glycoprotein, cell adhesion A GLU 80 A GLU 80 1 A PRO 81 A PRO 81 -2.43 LYAM1_HUMAN UNP 1 39 P14151 WTYHYSEKPMNWQRARRFCRDNYTDLVAIQNKAEIEYLEKTLPFSRSYYWIGIRKIGGIWTWVGTNKSLTEEAENWGDGE PNNKKNKEDCVEIYIKRNKDAGKWNDDACHKLKAALCYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQCQFVI 39 195 5VC1 1 157 P14151 A 1 1 157 1 ASN engineered mutation GLN 22 5VC1 A P14151 UNP 60 22 1 ASN engineered mutation GLN 139 5VC1 A P14151 UNP 177 139 3 5 3 2 anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A THR 2 A THR 2 A TYR 5 A TYR 5 A ALA 114 A ALA 114 A THR 119 A THR 119 A ASP 25 A ASP 25 A LEU 26 A LEU 26 A THR 2 A THR 2 A TYR 5 A TYR 5 A ALA 114 A ALA 114 A THR 119 A THR 119 A TYR 49 A TYR 49 A TRP 50 A TRP 50 A CYS 90 A CYS 90 A ILE 93 A ILE 93 A TRP 104 A TRP 104 A ASP 107 A ASP 107 A ILE 53 A ILE 53 A ILE 56 A ILE 56 A ILE 59 A ILE 59 A TRP 62 A TRP 62 A LYS 67 A LYS 67 A SER 68 A SER 68 A GLU 132 A GLU 132 A ILE 136 A ILE 136 A GLN 139 A GLN 139 A ASN 143 A ASN 143 197 I 2 3