0.021377
0.000000
0.000000
0.000000
0.018563
0.000000
0.000000
0.000000
0.008801
0.000000
0.000000
0.000000
Zhu, J.-Y.
Schonbrunn, E.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
46.780
53.870
113.620
C27 H32 N8 O2
500.595
1-[6-(2-hydroxypropan-2-yl)pyridin-2-yl]-6-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-2-(prop-2-en-1-yl)-1,2-dihydro-3H-pyrazolo[3,4-d]pyrimidin-3-one
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C4 H10 O3
106.120
DI(HYDROXYETHYL)ETHER
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
N
N
3
N
C
N
4
N
C
N
5
N
N
N
6
N
C
N
7
N
C
Y
8
N
C
Y
9
N
C
Y
10
N
C
Y
11
N
C
N
12
N
N
Y
13
N
C
Y
14
N
N
Y
15
N
C
Y
16
N
C
N
17
N
C
N
18
N
O
N
19
N
N
N
20
N
C
N
21
N
C
N
22
N
C
N
23
N
N
Y
24
N
C
Y
25
N
N
Y
26
N
C
Y
27
N
N
Y
28
N
C
Y
29
N
C
Y
30
N
C
Y
31
N
C
N
32
N
C
N
33
N
C
N
34
N
C
N
35
N
O
Y
36
N
C
Y
37
N
C
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
N
N
71
S
C
N
72
N
C
N
73
N
O
N
74
N
C
N
75
N
O
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
N
N
84
S
C
N
85
N
C
N
86
N
O
N
87
N
C
N
88
N
C
N
89
N
C
N
90
N
N
N
91
N
C
N
92
N
N
N
93
N
N
N
94
N
O
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
N
N
111
S
C
N
112
N
C
N
113
N
O
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
N
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
S
C
N
129
N
C
N
130
N
O
N
131
N
C
N
132
N
C
N
133
N
O
N
134
N
O
N
135
N
O
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
N
N
144
R
C
N
145
N
C
N
146
N
O
N
147
N
C
N
148
N
S
N
149
N
O
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
N
N
158
S
C
N
159
N
C
N
160
N
O
N
161
N
C
N
162
N
C
N
163
N
C
N
164
N
O
N
165
N
N
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
N
N
178
S
C
N
179
N
C
N
180
N
O
N
181
N
C
N
182
N
C
N
183
N
C
N
184
N
O
N
185
N
O
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
N
N
197
N
C
N
198
N
C
N
199
N
O
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
Y
211
N
C
Y
212
N
N
Y
213
N
C
Y
214
N
C
Y
215
N
N
N
216
N
O
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
O
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
S
C
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
N
N
253
S
C
N
254
N
C
N
255
N
O
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
C
N
260
N
O
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
C
N
282
N
N
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
N
304
N
C
N
305
N
S
N
306
N
C
N
307
N
O
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
C
N
320
N
O
N
321
N
C
N
322
N
O
N
323
N
C
N
324
N
C
N
325
N
O
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
N
N
337
S
C
N
338
N
C
N
339
N
O
N
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
Y
345
N
C
Y
346
N
C
N
347
N
O
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
N
364
N
C
N
365
N
C
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
S
C
N
378
N
C
N
379
N
O
N
380
N
C
N
381
N
O
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
N
N
391
S
C
N
392
N
C
N
393
N
O
N
394
R
C
N
395
N
O
N
396
N
C
N
397
N
O
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
N
Y
416
N
C
Y
417
N
C
Y
418
N
C
Y
419
N
C
Y
420
N
C
N
421
N
O
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
432
N
H
N
433
N
H
N
434
N
N
N
435
S
C
N
436
N
C
N
437
N
O
N
438
N
C
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
Y
444
N
C
N
445
N
O
N
446
N
O
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
N
N
459
S
C
N
460
N
C
N
461
N
O
N
462
N
C
N
463
N
C
N
464
N
C
N
465
N
O
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
Y
9
N
doub
Y
10
N
sing
Y
11
N
sing
Y
12
N
doub
Y
13
N
doub
Y
14
N
sing
N
15
N
sing
N
16
N
sing
Y
17
N
doub
Y
18
N
sing
Y
19
N
sing
N
20
N
sing
Y
21
N
doub
Y
22
N
sing
Y
23
N
doub
Y
24
N
sing
N
25
N
sing
Y
26
N
doub
N
27
N
sing
N
28
N
sing
Y
29
N
doub
Y
30
N
sing
N
31
N
sing
N
32
N
sing
Y
33
N
doub
N
34
N
sing
Y
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
doub
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
doub
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
doub
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
doub
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
doub
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
doub
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
doub
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
doub
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
doub
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
Y
213
N
sing
Y
214
N
doub
Y
215
N
doub
N
216
N
sing
Y
217
N
sing
N
218
N
sing
Y
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
doub
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
doub
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
doub
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
doub
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
doub
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
Y
337
N
doub
Y
338
N
sing
Y
339
N
sing
N
340
N
sing
Y
341
N
doub
N
342
N
sing
Y
343
N
doub
N
344
N
sing
Y
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
doub
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
doub
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
doub
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
Y
406
N
doub
Y
407
N
sing
Y
408
N
sing
N
409
N
sing
Y
410
N
doub
Y
411
N
sing
Y
412
N
sing
N
413
N
sing
Y
414
N
sing
Y
415
N
doub
N
416
N
sing
Y
417
N
doub
N
418
N
sing
Y
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
sing
N
428
N
sing
N
429
N
doub
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
Y
434
N
doub
Y
435
N
sing
Y
436
N
sing
N
437
N
sing
Y
438
N
doub
N
439
N
sing
Y
440
N
doub
N
441
N
sing
Y
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
doub
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
sing
N
462
N
sing
N
463
N
sing
N
464
N
sing
US
J. Med. Chem.
JMCMAR
0151
1520-4804
60
7863
7875
10.1021/acs.jmedchem.7b00996
28792760
Structural Basis of Wee Kinases Functionality and Inactivation by Diverse Small Molecule Inhibitors.
2017
10.2210/pdb5vd0/pdb
pdb_00005vd0
100
1
CCD
2015-12-09
MARMOSAIC 300 mm CCD
ROSENBAUM-ROCK DOUBLE-CRYSTAL
SINGLE WAVELENGTH
M
x-ray
1
1.00
1.0
22-ID
APS
1.00
SYNCHROTRON
APS BEAMLINE 22-ID
34498.133
Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase
2.7.11.1
KINASE DOMAIN, UNP RESIDUES 75-362
1
man
polymer
500.595
1-[6-(2-hydroxypropan-2-yl)pyridin-2-yl]-6-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-2-(prop-2-en-1-yl)-1,2-dihydro-3H-pyrazolo[3,4-d]pyrimidin-3-one
1
syn
non-polymer
106.120
DI(HYDROXYETHYL)ETHER
1
syn
non-polymer
18.015
water
68
nat
water
Myt1 kinase
no
no
MHHHHHHSSGVDLGTENLYFQSMHQLQPRRVSFRGEASETLQSPGYDPSRPESFFQQSFQRLSRLGHGSYGEVFKVRSKE
DGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELCGPSLQQHCEAWGASLPEAQVW
GYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFS
LGLTILEVACNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLRQP
MHHHHHHSSGVDLGTENLYFQSMHQLQPRRVSFRGEASETLQSPGYDPSRPESFFQQSFQRLSRLGHGSYGEVFKVRSKE
DGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELCGPSLQQHCEAWGASLPEAQVW
GYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFS
LGLTILEVACNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLRQP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
311
PKMYT1, MYT1
9606
Homo sapiens
469008
ESCHERICHIA COLI
BL21(DE3)-RIPL
PLASMID
Biological sequence
PNIC28-BSA4
1
2.07
40.72
VAPOR DIFFUSION, HANGING DROP
7.5
14 MG/ML MYT1, 50 mM HEPES PH 7.5, 0.5 mM DTT, 0.05 M POTASSIUM CHLORIDE, 17.5 (V/V) % pentaerythritol propoxylate (5/4 PO/OH), 1.5 mM MK1775
291
citation
citation_author
pdbx_audit_support
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Database references
Author supporting evidence
Data collection
Database references
1
0
2017-08-23
1
1
2017-10-11
1
2
2019-12-11
1
3
2024-03-06
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.title
_citation_author.name
_pdbx_audit_support.funding_organization
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
United States
National Institutes of Health/Eunice Kennedy Shriver National Institute of Child Health & Human Development (NIH/NICHD)
UO1 HD076542
N
RCSB
Y
RCSB
2017-04-01
REL
REL
8X7
1-[6-(2-hydroxypropan-2-yl)pyridin-2-yl]-6-{[4-(4-methylpiperazin-1-yl)phenyl]amino}-2-(prop-2-en-1-yl)-1,2-dihydro-3H-pyrazolo[3,4-d]pyrimidin-3-one
PEG
DI(HYDROXYETHYL)ETHER
HOH
water
MK1
1
2
8X7
8X7
401
A
PEG
1
3
PEG
PEG
402
A
HOH
42
4
HOH
HOH
501
A
HOH
1
4
HOH
HOH
502
A
HOH
19
4
HOH
HOH
503
A
HOH
45
4
HOH
HOH
504
A
HOH
40
4
HOH
HOH
505
A
HOH
11
4
HOH
HOH
506
A
HOH
43
4
HOH
HOH
507
A
HOH
31
4
HOH
HOH
508
A
HOH
28
4
HOH
HOH
509
A
HOH
26
4
HOH
HOH
510
A
HOH
66
4
HOH
HOH
511
A
HOH
22
4
HOH
HOH
512
A
HOH
57
4
HOH
HOH
513
A
HOH
15
4
HOH
HOH
514
A
HOH
36
4
HOH
HOH
515
A
HOH
49
4
HOH
HOH
516
A
HOH
44
4
HOH
HOH
517
A
HOH
61
4
HOH
HOH
518
A
HOH
17
4
HOH
HOH
519
A
HOH
5
4
HOH
HOH
520
A
HOH
20
4
HOH
HOH
521
A
HOH
58
4
HOH
HOH
522
A
HOH
27
4
HOH
HOH
523
A
HOH
18
4
HOH
HOH
524
A
HOH
10
4
HOH
HOH
525
A
HOH
68
4
HOH
HOH
526
A
HOH
65
4
HOH
HOH
527
A
HOH
13
4
HOH
HOH
528
A
HOH
9
4
HOH
HOH
529
A
HOH
53
4
HOH
HOH
530
A
HOH
6
4
HOH
HOH
531
A
HOH
33
4
HOH
HOH
532
A
HOH
3
4
HOH
HOH
533
A
HOH
63
4
HOH
HOH
534
A
HOH
54
4
HOH
HOH
535
A
HOH
23
4
HOH
HOH
536
A
HOH
52
4
HOH
HOH
537
A
HOH
21
4
HOH
HOH
538
A
HOH
50
4
HOH
HOH
539
A
HOH
47
4
HOH
HOH
540
A
HOH
25
4
HOH
HOH
541
A
HOH
7
4
HOH
HOH
542
A
HOH
41
4
HOH
HOH
543
A
HOH
56
4
HOH
HOH
544
A
HOH
64
4
HOH
HOH
545
A
HOH
32
4
HOH
HOH
546
A
HOH
39
4
HOH
HOH
547
A
HOH
38
4
HOH
HOH
548
A
HOH
14
4
HOH
HOH
549
A
HOH
67
4
HOH
HOH
550
A
HOH
12
4
HOH
HOH
551
A
HOH
35
4
HOH
HOH
552
A
HOH
16
4
HOH
HOH
553
A
HOH
34
4
HOH
HOH
554
A
HOH
2
4
HOH
HOH
555
A
HOH
55
4
HOH
HOH
556
A
HOH
51
4
HOH
HOH
557
A
HOH
48
4
HOH
HOH
558
A
HOH
46
4
HOH
HOH
559
A
HOH
37
4
HOH
HOH
560
A
HOH
59
4
HOH
HOH
561
A
HOH
29
4
HOH
HOH
562
A
HOH
4
4
HOH
HOH
563
A
HOH
60
4
HOH
HOH
564
A
HOH
30
4
HOH
HOH
565
A
HOH
8
4
HOH
HOH
566
A
HOH
24
4
HOH
HOH
567
A
HOH
62
4
HOH
HOH
568
A
n
1
-22
A
n
2
-21
A
n
3
-20
A
n
4
-19
A
n
5
-18
A
n
6
-17
A
n
7
-16
A
n
8
-15
A
n
9
-14
A
n
10
-13
A
n
11
-12
A
n
12
-11
A
LEU
-10
n
13
LEU
-10
A
GLY
-9
n
14
GLY
-9
A
THR
-8
n
15
THR
-8
A
GLU
-7
n
16
GLU
-7
A
ASN
-6
n
17
ASN
-6
A
LEU
-5
n
18
LEU
-5
A
TYR
-4
n
19
TYR
-4
A
PHE
-3
n
20
PHE
-3
A
n
21
72
A
n
22
73
A
n
23
74
A
n
24
75
A
n
25
76
A
LEU
77
n
26
LEU
77
A
GLN
78
n
27
GLN
78
A
PRO
79
n
28
PRO
79
A
ARG
80
n
29
ARG
80
A
ARG
81
n
30
ARG
81
A
VAL
82
n
31
VAL
82
A
SER
83
n
32
SER
83
A
PHE
84
n
33
PHE
84
A
ARG
85
n
34
ARG
85
A
GLY
86
n
35
GLY
86
A
GLU
87
n
36
GLU
87
A
ALA
88
n
37
ALA
88
A
SER
89
n
38
SER
89
A
GLU
90
n
39
GLU
90
A
THR
91
n
40
THR
91
A
LEU
92
n
41
LEU
92
A
GLN
93
n
42
GLN
93
A
SER
94
n
43
SER
94
A
PRO
95
n
44
PRO
95
A
GLY
96
n
45
GLY
96
A
TYR
97
n
46
TYR
97
A
ASP
98
n
47
ASP
98
A
PRO
99
n
48
PRO
99
A
SER
100
n
49
SER
100
A
ARG
101
n
50
ARG
101
A
PRO
102
n
51
PRO
102
A
GLU
103
n
52
GLU
103
A
SER
104
n
53
SER
104
A
PHE
105
n
54
PHE
105
A
PHE
106
n
55
PHE
106
A
GLN
107
n
56
GLN
107
A
GLN
108
n
57
GLN
108
A
SER
109
n
58
SER
109
A
PHE
110
n
59
PHE
110
A
GLN
111
n
60
GLN
111
A
ARG
112
n
61
ARG
112
A
LEU
113
n
62
LEU
113
A
SER
114
n
63
SER
114
A
ARG
115
n
64
ARG
115
A
LEU
116
n
65
LEU
116
A
GLY
117
n
66
GLY
117
A
HIS
118
n
67
HIS
118
A
GLY
119
n
68
GLY
119
A
SER
120
n
69
SER
120
A
TYR
121
n
70
TYR
121
A
GLY
122
n
71
GLY
122
A
GLU
123
n
72
GLU
123
A
VAL
124
n
73
VAL
124
A
PHE
125
n
74
PHE
125
A
LYS
126
n
75
LYS
126
A
VAL
127
n
76
VAL
127
A
ARG
128
n
77
ARG
128
A
SER
129
n
78
SER
129
A
LYS
130
n
79
LYS
130
A
GLU
131
n
80
GLU
131
A
ASP
132
n
81
ASP
132
A
GLY
133
n
82
GLY
133
A
ARG
134
n
83
ARG
134
A
LEU
135
n
84
LEU
135
A
TYR
136
n
85
TYR
136
A
ALA
137
n
86
ALA
137
A
VAL
138
n
87
VAL
138
A
LYS
139
n
88
LYS
139
A
ARG
140
n
89
ARG
140
A
SER
141
n
90
SER
141
A
MET
142
n
91
MET
142
A
SER
143
n
92
SER
143
A
PRO
144
n
93
PRO
144
A
PHE
145
n
94
PHE
145
A
ARG
146
n
95
ARG
146
A
GLY
147
n
96
GLY
147
A
PRO
148
n
97
PRO
148
A
LYS
149
n
98
LYS
149
A
ASP
150
n
99
ASP
150
A
ARG
151
n
100
ARG
151
A
ALA
152
n
101
ALA
152
A
ARG
153
n
102
ARG
153
A
LYS
154
n
103
LYS
154
A
LEU
155
n
104
LEU
155
A
ALA
156
n
105
ALA
156
A
GLU
157
n
106
GLU
157
A
VAL
158
n
107
VAL
158
A
GLY
159
n
108
GLY
159
A
SER
160
n
109
SER
160
A
HIS
161
n
110
HIS
161
A
GLU
162
n
111
GLU
162
A
LYS
163
n
112
LYS
163
A
VAL
164
n
113
VAL
164
A
GLY
165
n
114
GLY
165
A
GLN
166
n
115
GLN
166
A
HIS
167
n
116
HIS
167
A
PRO
168
n
117
PRO
168
A
CYS
169
n
118
CYS
169
A
CYS
170
n
119
CYS
170
A
VAL
171
n
120
VAL
171
A
ARG
172
n
121
ARG
172
A
LEU
173
n
122
LEU
173
A
GLU
174
n
123
GLU
174
A
GLN
175
n
124
GLN
175
A
ALA
176
n
125
ALA
176
A
TRP
177
n
126
TRP
177
A
GLU
178
n
127
GLU
178
A
GLU
179
n
128
GLU
179
A
GLY
180
n
129
GLY
180
A
GLY
181
n
130
GLY
181
A
ILE
182
n
131
ILE
182
A
LEU
183
n
132
LEU
183
A
TYR
184
n
133
TYR
184
A
LEU
185
n
134
LEU
185
A
GLN
186
n
135
GLN
186
A
THR
187
n
136
THR
187
A
GLU
188
n
137
GLU
188
A
LEU
189
n
138
LEU
189
A
CYS
190
n
139
CYS
190
A
GLY
191
n
140
GLY
191
A
PRO
192
n
141
PRO
192
A
SER
193
n
142
SER
193
A
LEU
194
n
143
LEU
194
A
GLN
195
n
144
GLN
195
A
GLN
196
n
145
GLN
196
A
HIS
197
n
146
HIS
197
A
CYS
198
n
147
CYS
198
A
GLU
199
n
148
GLU
199
A
ALA
200
n
149
ALA
200
A
TRP
201
n
150
TRP
201
A
GLY
202
n
151
GLY
202
A
ALA
203
n
152
ALA
203
A
SER
204
n
153
SER
204
A
LEU
205
n
154
LEU
205
A
PRO
206
n
155
PRO
206
A
GLU
207
n
156
GLU
207
A
ALA
208
n
157
ALA
208
A
GLN
209
n
158
GLN
209
A
VAL
210
n
159
VAL
210
A
TRP
211
n
160
TRP
211
A
GLY
212
n
161
GLY
212
A
TYR
213
n
162
TYR
213
A
LEU
214
n
163
LEU
214
A
ARG
215
n
164
ARG
215
A
ASP
216
n
165
ASP
216
A
THR
217
n
166
THR
217
A
LEU
218
n
167
LEU
218
A
LEU
219
n
168
LEU
219
A
ALA
220
n
169
ALA
220
A
LEU
221
n
170
LEU
221
A
ALA
222
n
171
ALA
222
A
HIS
223
n
172
HIS
223
A
LEU
224
n
173
LEU
224
A
HIS
225
n
174
HIS
225
A
SER
226
n
175
SER
226
A
GLN
227
n
176
GLN
227
A
GLY
228
n
177
GLY
228
A
LEU
229
n
178
LEU
229
A
VAL
230
n
179
VAL
230
A
HIS
231
n
180
HIS
231
A
LEU
232
n
181
LEU
232
A
ASP
233
n
182
ASP
233
A
VAL
234
n
183
VAL
234
A
LYS
235
n
184
LYS
235
A
PRO
236
n
185
PRO
236
A
ALA
237
n
186
ALA
237
A
ASN
238
n
187
ASN
238
A
ILE
239
n
188
ILE
239
A
PHE
240
n
189
PHE
240
A
LEU
241
n
190
LEU
241
A
GLY
242
n
191
GLY
242
A
PRO
243
n
192
PRO
243
A
ARG
244
n
193
ARG
244
A
GLY
245
n
194
GLY
245
A
ARG
246
n
195
ARG
246
A
CYS
247
n
196
CYS
247
A
LYS
248
n
197
LYS
248
A
LEU
249
n
198
LEU
249
A
GLY
250
n
199
GLY
250
A
ASP
251
n
200
ASP
251
A
PHE
252
n
201
PHE
252
A
GLY
253
n
202
GLY
253
A
LEU
254
n
203
LEU
254
A
LEU
255
n
204
LEU
255
A
VAL
256
n
205
VAL
256
A
GLU
257
n
206
GLU
257
A
LEU
258
n
207
LEU
258
A
GLY
259
n
208
GLY
259
A
THR
260
n
209
THR
260
A
ALA
261
n
210
ALA
261
A
GLY
262
n
211
GLY
262
A
ALA
263
n
212
ALA
263
A
GLY
264
n
213
GLY
264
A
GLU
265
n
214
GLU
265
A
VAL
266
n
215
VAL
266
A
GLN
267
n
216
GLN
267
A
GLU
268
n
217
GLU
268
A
GLY
269
n
218
GLY
269
A
ASP
270
n
219
ASP
270
A
PRO
271
n
220
PRO
271
A
ARG
272
n
221
ARG
272
A
TYR
273
n
222
TYR
273
A
MET
274
n
223
MET
274
A
ALA
275
n
224
ALA
275
A
PRO
276
n
225
PRO
276
A
GLU
277
n
226
GLU
277
A
LEU
278
n
227
LEU
278
A
LEU
279
n
228
LEU
279
A
GLN
280
n
229
GLN
280
A
GLY
281
n
230
GLY
281
A
SER
282
n
231
SER
282
A
TYR
283
n
232
TYR
283
A
GLY
284
n
233
GLY
284
A
THR
285
n
234
THR
285
A
ALA
286
n
235
ALA
286
A
ALA
287
n
236
ALA
287
A
ASP
288
n
237
ASP
288
A
VAL
289
n
238
VAL
289
A
PHE
290
n
239
PHE
290
A
SER
291
n
240
SER
291
A
LEU
292
n
241
LEU
292
A
GLY
293
n
242
GLY
293
A
LEU
294
n
243
LEU
294
A
THR
295
n
244
THR
295
A
ILE
296
n
245
ILE
296
A
LEU
297
n
246
LEU
297
A
GLU
298
n
247
GLU
298
A
VAL
299
n
248
VAL
299
A
ALA
300
n
249
ALA
300
A
CYS
301
n
250
CYS
301
A
ASN
302
n
251
ASN
302
A
MET
303
n
252
MET
303
A
GLU
304
n
253
GLU
304
A
LEU
305
n
254
LEU
305
A
PRO
306
n
255
PRO
306
A
HIS
307
n
256
HIS
307
A
GLY
308
n
257
GLY
308
A
GLY
309
n
258
GLY
309
A
GLU
310
n
259
GLU
310
A
GLY
311
n
260
GLY
311
A
TRP
312
n
261
TRP
312
A
GLN
313
n
262
GLN
313
A
GLN
314
n
263
GLN
314
A
LEU
315
n
264
LEU
315
A
ARG
316
n
265
ARG
316
A
GLN
317
n
266
GLN
317
A
GLY
318
n
267
GLY
318
A
TYR
319
n
268
TYR
319
A
LEU
320
n
269
LEU
320
A
PRO
321
n
270
PRO
321
A
PRO
322
n
271
PRO
322
A
GLU
323
n
272
GLU
323
A
PHE
324
n
273
PHE
324
A
THR
325
n
274
THR
325
A
ALA
326
n
275
ALA
326
A
GLY
327
n
276
GLY
327
A
LEU
328
n
277
LEU
328
A
SER
329
n
278
SER
329
A
SER
330
n
279
SER
330
A
GLU
331
n
280
GLU
331
A
LEU
332
n
281
LEU
332
A
ARG
333
n
282
ARG
333
A
SER
334
n
283
SER
334
A
VAL
335
n
284
VAL
335
A
LEU
336
n
285
LEU
336
A
VAL
337
n
286
VAL
337
A
MET
338
n
287
MET
338
A
MET
339
n
288
MET
339
A
LEU
340
n
289
LEU
340
A
GLU
341
n
290
GLU
341
A
PRO
342
n
291
PRO
342
A
ASP
343
n
292
ASP
343
A
PRO
344
n
293
PRO
344
A
LYS
345
n
294
LYS
345
A
LEU
346
n
295
LEU
346
A
ARG
347
n
296
ARG
347
A
ALA
348
n
297
ALA
348
A
THR
349
n
298
THR
349
A
ALA
350
n
299
ALA
350
A
GLU
351
n
300
GLU
351
A
ALA
352
n
301
ALA
352
A
LEU
353
n
302
LEU
353
A
LEU
354
n
303
LEU
354
A
ALA
355
n
304
ALA
355
A
LEU
356
n
305
LEU
356
A
PRO
357
n
306
PRO
357
A
VAL
358
n
307
VAL
358
A
LEU
359
n
308
LEU
359
A
ARG
360
n
309
ARG
360
A
GLN
361
n
310
GLN
361
A
n
311
362
A
1.8882
-0.2924
-0.0575
1.6189
-0.2738
2.1736
0.0261
-0.1115
-0.1901
-0.0173
-0.0112
0.1130
0.1956
-0.0360
-0.0142
0.2576
-0.0136
-0.0154
0.3872
-0.0096
0.2259
refined
-24.7526
-2.4965
13.0878
X-RAY DIFFRACTION
1.7600
0.9683
-0.5940
2.8457
-0.1069
3.0550
0.0040
0.0048
0.0164
0.1932
-0.0158
0.0786
0.2183
-0.0834
0.0084
0.2256
0.0225
-0.0264
0.4050
-0.0201
0.1943
refined
-21.0443
-0.4706
-8.0607
X-RAY DIFFRACTION
1.7871
0.3432
-0.5163
2.9097
0.3397
2.5392
-0.0480
0.0662
0.0543
-0.0930
0.0945
0.0875
0.0038
-0.1371
-0.0115
0.2382
0.0021
-0.0226
0.4658
-0.0309
0.2055
refined
-24.8456
5.9980
-19.5327
X-RAY DIFFRACTION
A
-10
A
188
X-RAY DIFFRACTION
1
chain 'A' and (resid -10 through 188 )
A
189
A
269
X-RAY DIFFRACTION
2
chain 'A' and (resid 189 through 269 )
A
270
A
361
X-RAY DIFFRACTION
3
chain 'A' and (resid 270 through 361 )
author_and_software_defined_assembly
PISA
1
monomeric
gel filtration
210
2
15010
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
80
A
N
ARG
29
A
O
GLU
178
A
O
GLU
127
A
N
GLN
175
A
N
GLN
124
A
O
GLN
186
A
O
GLN
135
A
O
THR
187
A
O
THR
136
A
N
ALA
137
A
N
ALA
86
A
O
ARG
140
A
O
ARG
89
A
N
GLU
123
A
N
GLU
72
A
O
VAL
124
A
O
VAL
73
A
N
GLY
117
A
N
GLY
66
A
N
VAL
230
A
N
VAL
179
A
O
VAL
256
A
O
VAL
205
A
N
PHE
240
A
N
PHE
189
A
O
LYS
248
A
O
LYS
197
1
A
MET
-22
A
MET
1
1
Y
1
A
HIS
-21
A
HIS
2
1
Y
1
A
HIS
-20
A
HIS
3
1
Y
1
A
HIS
-19
A
HIS
4
1
Y
1
A
HIS
-18
A
HIS
5
1
Y
1
A
HIS
-17
A
HIS
6
1
Y
1
A
HIS
-16
A
HIS
7
1
Y
1
A
SER
-15
A
SER
8
1
Y
1
A
SER
-14
A
SER
9
1
Y
1
A
GLY
-13
A
GLY
10
1
Y
1
A
VAL
-12
A
VAL
11
1
Y
1
A
ASP
-11
A
ASP
12
1
Y
1
A
GLN
72
A
GLN
21
1
Y
1
A
SER
73
A
SER
22
1
Y
1
A
MET
74
A
MET
23
1
Y
1
A
HIS
75
A
HIS
24
1
Y
1
A
GLN
76
A
GLN
25
1
Y
1
A
PRO
362
A
PRO
311
1
Y
1
A
ARG
85
-163.49
84.70
1
A
ASP
233
-153.04
38.36
1
A
ALA
261
60.14
70.23
1
A
GLU
265
-155.36
13.73
154.590
43.8782
12.290
0.2310
0.1952
2.1300
48.6760
828
16576
5.0000
99.2900
0.1900
1
FREE R-VALUE
1.370
MOLECULAR REPLACEMENT
25.3200
0.9000
1.1100
2.1300
48.6760
68
2432
36.26
28.99
86
0
2278
293
0.006
2378
0.839
3218
0.032
333
0.004
422
14.729
892
0.2695
0.0000
0.2423
2.2634
135
2572
2707
6
100.0000
0.2735
0.0000
0.2247
2.4381
137
2595
2732
6
100.0000
0.2347
0.0000
0.2178
2.6835
136
2598
2734
6
100.0000
0.2717
0.0000
0.2167
3.0717
138
2620
2758
6
100.0000
0.2250
0.0000
0.1839
3.8698
139
2640
2779
6
99.0000
0.1972
0.0000
0.1635
48.6888
143
2723
2866
6
98.0000
27.460
2.130
48.676
5VD0
16578
-3.000
0.999
0.059
0.068
0.986
1
17.220
4.036
99.300
0.358
2.130
2.190
4.120
1193
0.933
0.412
1
4.061
99.400
0.315
2.190
2.250
4.550
1201
0.949
0.362
1
4.090
100.000
0.268
2.250
2.310
5.510
1137
0.962
0.308
1
4.090
99.900
0.251
2.310
2.380
5.830
1109
0.963
0.288
1
4.087
99.600
0.191
2.380
2.460
7.100
1096
0.978
0.219
1
4.084
99.700
0.166
2.460
2.550
8.210
1029
0.981
0.191
1
4.070
99.800
0.141
2.550
2.640
9.980
1021
0.985
0.162
1
4.071
99.800
0.122
2.640
2.750
10.980
981
0.991
0.140
1
4.093
99.700
0.099
2.750
2.870
13.030
927
0.992
0.114
1
4.037
99.800
0.080
2.870
3.010
15.840
905
0.994
0.092
1
4.053
99.500
0.059
3.010
3.180
20.220
855
0.997
0.068
1
4.064
99.700
0.048
3.180
3.370
24.610
817
0.998
0.055
1
4.035
99.400
0.038
3.370
3.600
29.710
771
0.998
0.044
1
4.030
99.200
0.032
3.600
3.890
34.440
714
0.999
0.036
1
4.027
99.300
0.028
3.890
4.260
38.800
654
0.999
0.032
1
3.972
99.100
0.028
4.260
4.760
40.600
607
0.999
0.032
1
3.944
98.100
0.028
4.760
5.500
39.970
525
0.999
0.032
1
3.968
97.400
0.028
5.500
6.740
37.380
461
0.999
0.032
1
3.926
97.100
0.023
6.740
9.530
43.220
361
0.999
0.026
1
3.753
97.300
0.020
9.530
48.676
46.700
214
0.999
0.024
1
3.421
94.300
data scaling
XSCALE
data collection
SERGUI
refinement
PHENIX
1.9_1692
data extraction
PDB_EXTRACT
3.22
data reduction
XDS
phasing
PHASER
N
CRYSTAL STRUCTURE OF HUMAN MYT1 KINASE DOMAIN IN COMPLEX WITH MK1775
1
N
N
2
N
N
3
N
N
4
N
N
A
SER
104
A
SER
53
HELX_P
A
SER
109
A
SER
58
1
AA1
6
A
GLY
147
A
GLY
96
HELX_P
A
GLY
165
A
GLY
114
1
AA2
19
A
SER
193
A
SER
142
HELX_P
A
GLY
202
A
GLY
151
1
AA3
10
A
PRO
206
A
PRO
155
HELX_P
A
GLN
227
A
GLN
176
1
AA4
22
A
PRO
243
A
PRO
192
HELX_P
A
GLY
245
A
GLY
194
5
AA5
3
A
ASP
251
A
ASP
200
HELX_P
A
LEU
255
A
LEU
204
5
AA6
5
A
ASP
270
A
ASP
219
HELX_P
A
MET
274
A
MET
223
5
AA7
5
A
ALA
275
A
ALA
224
HELX_P
A
GLY
281
A
GLY
230
5
AA8
7
A
THR
285
A
THR
234
HELX_P
A
ASN
302
A
ASN
251
1
AA9
18
A
GLY
308
A
GLY
257
HELX_P
A
ARG
316
A
ARG
265
1
AB1
9
A
PRO
321
A
PRO
270
HELX_P
A
ALA
326
A
ALA
275
1
AB2
6
A
SER
329
A
SER
278
HELX_P
A
LEU
340
A
LEU
289
1
AB3
12
A
THR
349
A
THR
298
HELX_P
A
ALA
355
A
ALA
304
1
AB4
7
A
LEU
356
A
LEU
305
HELX_P
A
ARG
360
A
ARG
309
5
AB5
5
TRANSFERASE/TRANSFERASE INHIBITOR
KINASE DOMAIN, CELL CYCLE, TYROSINE- AND THREONINE-SPECIFIC KINASE, MEMBRANE-ASSOCIATED PROTEIN KINASE, TRANSFERASE, INHIBITOR, TRANSFERASE-TRANSFERASE INHIBITOR complex
A
GLY
264
A
GLY
213
1
A
GLU
265
A
GLU
214
1.24
PMYT1_HUMAN
UNP
1
75
Q99640
HQLQPRRVSFRGEASETLQSPGYDPSRPESFFQQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARK
LAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQTELCGPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDV
KPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVACNMELPHGGEGWQQ
LRQGYLPPEFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLRQP
75
362
5VD0
75
362
Q99640
A
1
24
311
1
initiating methionine
MET
-22
5VD0
A
Q99640
UNP
1
1
expression tag
HIS
-21
5VD0
A
Q99640
UNP
2
1
expression tag
HIS
-20
5VD0
A
Q99640
UNP
3
1
expression tag
HIS
-19
5VD0
A
Q99640
UNP
4
1
expression tag
HIS
-18
5VD0
A
Q99640
UNP
5
1
expression tag
HIS
-17
5VD0
A
Q99640
UNP
6
1
expression tag
HIS
-16
5VD0
A
Q99640
UNP
7
1
expression tag
SER
-15
5VD0
A
Q99640
UNP
8
1
expression tag
SER
-14
5VD0
A
Q99640
UNP
9
1
expression tag
GLY
-13
5VD0
A
Q99640
UNP
10
1
expression tag
VAL
-12
5VD0
A
Q99640
UNP
11
1
expression tag
ASP
-11
5VD0
A
Q99640
UNP
12
1
expression tag
LEU
-10
5VD0
A
Q99640
UNP
13
1
expression tag
GLY
-9
5VD0
A
Q99640
UNP
14
1
expression tag
THR
-8
5VD0
A
Q99640
UNP
15
1
expression tag
GLU
-7
5VD0
A
Q99640
UNP
16
1
expression tag
ASN
-6
5VD0
A
Q99640
UNP
17
1
expression tag
LEU
-5
5VD0
A
Q99640
UNP
18
1
expression tag
TYR
-4
5VD0
A
Q99640
UNP
19
1
expression tag
PHE
-3
5VD0
A
Q99640
UNP
20
1
expression tag
GLN
72
5VD0
A
Q99640
UNP
21
1
expression tag
SER
73
5VD0
A
Q99640
UNP
22
1
expression tag
MET
74
5VD0
A
Q99640
UNP
23
6
2
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ARG
80
A
ARG
29
A
ARG
81
A
ARG
30
A
LEU
173
A
LEU
122
A
GLU
179
A
GLU
128
A
ILE
182
A
ILE
131
A
GLU
188
A
GLU
137
A
LEU
135
A
LEU
84
A
SER
141
A
SER
90
A
GLY
122
A
GLY
71
A
SER
129
A
SER
78
A
PHE
110
A
PHE
59
A
GLY
119
A
GLY
68
A
LEU
229
A
LEU
178
A
VAL
230
A
VAL
179
A
VAL
256
A
VAL
205
A
GLU
257
A
GLU
206
A
ILE
239
A
ILE
188
A
LEU
241
A
LEU
190
A
CYS
247
A
CYS
196
A
LEU
249
A
LEU
198
binding site for residue 8X7 A 401
A
8X7
401
Software
15
binding site for residue PEG A 402
A
PEG
402
Software
4
A
LEU
116
A
LEU
65
15
1_555
A
TYR
121
A
TYR
70
15
1_555
A
VAL
124
A
VAL
73
15
1_555
A
VAL
171
A
VAL
120
15
1_555
A
THR
187
A
THR
136
15
1_555
A
GLU
188
A
GLU
137
15
1_555
A
LEU
189
A
LEU
138
15
1_555
A
CYS
190
A
CYS
139
15
1_555
A
GLY
191
A
GLY
140
15
1_555
A
GLN
196
A
GLN
145
15
1_555
A
ALA
237
A
ALA
186
15
1_555
A
PHE
240
A
PHE
189
15
1_555
A
HOH
510
D
HOH
15
1_555
A
HOH
529
D
HOH
15
1_555
A
HOH
536
D
HOH
15
1_555
A
ARG
112
A
ARG
61
4
1_555
A
SER
114
A
SER
63
4
1_555
A
ARG
115
A
ARG
64
4
1_555
A
HOH
545
D
HOH
4
4_555
19
P 21 21 21