0.019616 0.011325 0.000000 0.000000 0.022650 0.000000 0.000000 0.000000 0.008582 0.00000 0.00000 0.00000 0000-0002-9803-5310 Porter, N.J. Christianson, D.W. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 3 90.00 90.00 120.00 50.980 50.980 116.517 C10 H19 N O5 233.262 (2S)-2-amino-8,8-dihydroxy-8-[(2S)-oxiran-2-yl]octanoic acid L-peptide linking C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H11 N O2 129.157 6-CARBOXYPIPERIDINE D-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C4 H8 O2 88.105 1,4-DIETHYLENE DIOXIDE non-polymer C2 H6 O2 62.068 1,2-ETHANEDIOL ETHYLENE GLYCOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking K 1 39.098 POTASSIUM ION non-polymer C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N O N 2 N C N 3 N C N 4 N C N 5 N C N 6 N C N 7 N C N 8 S C N 9 N N N 10 N C N 11 N O N 12 N O N 13 S C N 14 N C N 15 N O N 16 N O N 17 N H N 18 N H N 19 N H N 20 N H N 21 N H N 22 N H N 23 N H N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N N N 37 S C N 38 N C N 39 N O N 40 N C N 41 N O N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N H N 49 N N N 50 S C N 51 N C N 52 N O N 53 N C N 54 N C N 55 N C N 56 N N N 57 N C N 58 N N N 59 N N N 60 N O N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N N N 77 S C N 78 N C N 79 N O N 80 N C N 81 N C N 82 N O N 83 N N N 84 N O N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N N N 94 S C N 95 N C N 96 N O N 97 N C N 98 N C N 99 N O N 100 N O N 101 N O N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 N C N 111 N C N 112 N C N 113 N C N 114 R C N 115 N C N 116 N O N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N O N 128 N H N 129 N N N 130 R C N 131 N C N 132 N O N 133 N C N 134 N S N 135 N O N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N C N 144 N C N 145 N C N 146 N C N 147 N O N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N C N 158 N O N 159 N C N 160 N O N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N N N 168 S C N 169 N C N 170 N O N 171 N C N 172 N C N 173 N C N 174 N O N 175 N N N 176 N O N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N N N 188 S C N 189 N C N 190 N O N 191 N C N 192 N C N 193 N C N 194 N O N 195 N O N 196 N O N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 N C N 208 N C N 209 N O N 210 N O N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N N N 217 S C N 218 N C N 219 N O N 220 N C Y 221 N C Y 222 N N Y 223 N C Y 224 N C Y 225 N N N 226 N O N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N O N 238 N H N 239 N H N 240 N N N 241 S C N 242 N C N 243 N O N 244 S C N 245 N C N 246 N C N 247 N C N 248 N O N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N K N 263 N N N 264 S C N 265 N C N 266 N O N 267 N C N 268 N C N 269 N C N 270 N C N 271 N O N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N N N 286 S C N 287 N C N 288 N O N 289 N C N 290 N C N 291 N C N 292 N C N 293 N N N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N N N 311 S C N 312 N C N 313 N O N 314 N C N 315 N C N 316 N S N 317 N C N 318 N O N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N N N 331 S C N 332 N C N 333 N O N 334 N C Y 335 N C Y 336 N C Y 337 N C Y 338 N C Y 339 N C Y 340 N C N 341 N O N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N N N 354 S C N 355 N C N 356 N O N 357 N C N 358 N C N 359 N C N 360 N O N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N N N 371 S C N 372 N C N 373 N O N 374 N C N 375 N O N 376 N O N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N H N 384 N N N 385 S C N 386 N C N 387 N O N 388 R C N 389 N O N 390 N C N 391 N O N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N N N 402 S C N 403 N C N 404 N O N 405 N C Y 406 N C Y 407 N C Y 408 N C Y 409 N N Y 410 N C Y 411 N C Y 412 N C Y 413 N C Y 414 N C N 415 N O N 416 N H N 417 N H N 418 N H N 419 N H N 420 N H N 421 N H N 422 N H N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N N N 429 S C N 430 N C N 431 N O N 432 N C Y 433 N C Y 434 N C Y 435 N C Y 436 N C Y 437 N C Y 438 N C N 439 N O N 440 N O N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N H N 452 N N N 453 S C N 454 N C N 455 N O N 456 N C N 457 N C N 458 N C N 459 N O N 460 N H N 461 N H N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N doub N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N doub N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N doub N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N doub N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N doub N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N doub N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N doub N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N doub N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N doub N 214 N sing N 215 N sing N 216 N sing N 217 N sing Y 218 N sing Y 219 N doub Y 220 N doub N 221 N sing Y 222 N sing N 223 N sing Y 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N doub N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N doub N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N doub N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N doub N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N doub N 322 N sing N 323 N sing N 324 N sing N 325 N sing Y 326 N doub Y 327 N sing Y 328 N sing N 329 N sing Y 330 N doub N 331 N sing Y 332 N doub N 333 N sing Y 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N doub N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N doub N 391 N sing N 392 N sing N 393 N sing N 394 N sing Y 395 N doub Y 396 N sing Y 397 N sing N 398 N sing Y 399 N doub Y 400 N sing Y 401 N sing N 402 N sing Y 403 N sing Y 404 N doub N 405 N sing Y 406 N doub N 407 N sing Y 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N doub N 419 N sing N 420 N sing N 421 N sing N 422 N sing Y 423 N doub Y 424 N sing Y 425 N sing N 426 N sing Y 427 N doub N 428 N sing Y 429 N doub N 430 N sing Y 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N doub N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing US ACS Chem. Biol. 1554-8937 12 2281 2286 10.1021/acschembio.7b00330 28846375 Binding of the Microbial Cyclic Tetrapeptide Trapoxin A to the Class I Histone Deacetylase HDAC8. 2017 10.2210/pdb5vi6/pdb pdb_00005vi6 100 1 PIXEL 2016-11-17 DECTRIS PILATUS3 6M SINGLE WAVELENGTH M x-ray 1 0.979 1.0 BL9-2 SSRL 0.979 SYNCHROTRON SSRL BEAMLINE BL9-2 41161.777 Histone deacetylase 8 3.5.1.98 residues 8-377 1 man polymer 638.751 Trapoxin A 1 syn polymer 65.409 ZINC ION 1 syn non-polymer 39.098 POTASSIUM ION 2 syn non-polymer 62.068 1,2-ETHANEDIOL 10 syn non-polymer 88.105 1,4-DIETHYLENE DIOXIDE 2 syn non-polymer 18.015 water 377 nat water HD8 (3S,6S,9S,15aR)-6,9-dibenzyl-3-{6,6-dihydroxy-6-[(2S)-oxiran-2-yl]hexyl}octahydro-2H-pyrido[1,2-a][1,4,7,10]tetraazacyclododecine-1,4,7,10(3H,12H)-tetrone no no SNADSGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQE GDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRL RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICE SVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGK TLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVV SNADSGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQE GDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRL RRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICE SVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGK TLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVV A polypeptide(L) no yes FF(CPI)(5OM) FFXX B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 372 HDAC8, HDACL1, CDA07 9606 Homo sapiens 562 Escherichia coli Biological sequence 1 2.14 42.56 VAPOR DIFFUSION, SITTING DROP 8.0 35% dioxane 277 atom_site atom_site_anisotrop entity entity_name_com entity_poly entity_poly_seq pdbx_entity_src_syn pdbx_molecule_features pdbx_struct_assembly pdbx_struct_assembly_gen pdbx_struct_assembly_prop pdbx_struct_conn_angle pdbx_validate_close_contact struct_conn struct_conn_type struct_keywords struct_ref struct_ref_seq struct_site struct_site_gen citation pdbx_audit_support pdbx_audit_support chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_conn_type atom_site atom_site_anisotrop chem_comp_atom chem_comp_bond struct_conn repository Initial release Advisory Atomic model Database references Derived calculations Non-polymer description Polymer sequence Source and taxonomy Structure summary Author supporting evidence Database references Author supporting evidence Data collection Database references Derived calculations Refinement description Atomic model Data collection Derived calculations 1 0 2017-09-06 2 0 2017-09-13 2 1 2017-09-27 2 2 2020-01-01 2 3 2023-10-04 3 0 2023-11-15 _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.group_PDB _atom_site.label_alt_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.occupancy _atom_site.type_symbol _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.id _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.pdbx_label_seq_id _atom_site_anisotrop.type_symbol _chem_comp.formula _chem_comp.id _chem_comp.name _chem_comp.pdbx_synonyms _entity.formula_weight _entity.pdbx_description _entity.pdbx_fragment _entity.pdbx_number_of_molecules _entity.type _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_prop.value _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.auth_seq_id_2 _struct_keywords.pdbx_keywords _struct_keywords.text _citation.journal_volume _citation.page_first _citation.page_last _pdbx_audit_support.funding_organization _pdbx_audit_support.funding_organization _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_atom_id _atom_site.label_atom_id _atom_site_anisotrop.pdbx_auth_atom_id _atom_site_anisotrop.pdbx_label_atom_id _chem_comp_atom.atom_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _struct_conn.ptnr2_label_atom_id United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) GM49758 N RCSB Y RCSB 2017-04-14 REL REL ZN ZINC ION K POTASSIUM ION EDO 1,2-ETHANEDIOL DIO 1,4-DIETHYLENE DIOXIDE HOH water 314151 ascomycetes Helicoma ambiens sample 1 4 3EWF PDB experimental model Inhibitor Trapoxin A Cyclic peptide ZN 1 3 ZN ZN 401 A K 1 4 K K 402 A K 2 4 K K 403 A EDO 1 5 EDO EDO 404 A EDO 3 5 EDO EDO 405 A EDO 4 5 EDO EDO 406 A EDO 10 5 EDO EDO 407 A EDO 16 5 EDO EDO 408 A EDO 19 5 EDO EDO 409 A EDO 20 5 EDO EDO 410 A EDO 21 5 EDO EDO 411 A EDO 23 5 EDO EDO 412 A EDO 24 5 EDO EDO 413 A DIO 2 6 DIO DIO 414 A DIO 3 6 DIO DIO 415 A HOH 373 7 HOH HOH 501 A HOH 424 7 HOH HOH 502 A HOH 244 7 HOH HOH 503 A HOH 345 7 HOH HOH 504 A HOH 425 7 HOH HOH 505 A HOH 124 7 HOH HOH 506 A HOH 186 7 HOH HOH 507 A HOH 410 7 HOH HOH 508 A HOH 435 7 HOH HOH 509 A HOH 231 7 HOH HOH 510 A HOH 429 7 HOH HOH 511 A HOH 277 7 HOH HOH 512 A HOH 444 7 HOH HOH 513 A HOH 255 7 HOH HOH 514 A HOH 220 7 HOH HOH 515 A HOH 300 7 HOH HOH 516 A HOH 98 7 HOH HOH 517 A HOH 229 7 HOH HOH 518 A HOH 69 7 HOH HOH 519 A HOH 348 7 HOH HOH 520 A HOH 87 7 HOH HOH 521 A HOH 86 7 HOH HOH 522 A HOH 407 7 HOH HOH 523 A HOH 219 7 HOH HOH 524 A HOH 357 7 HOH HOH 525 A HOH 404 7 HOH HOH 526 A HOH 439 7 HOH HOH 527 A HOH 44 7 HOH HOH 528 A HOH 198 7 HOH HOH 529 A HOH 230 7 HOH HOH 530 A HOH 58 7 HOH HOH 531 A HOH 145 7 HOH HOH 532 A HOH 241 7 HOH HOH 533 A HOH 449 7 HOH HOH 534 A HOH 451 7 HOH HOH 535 A HOH 411 7 HOH HOH 536 A HOH 82 7 HOH HOH 537 A HOH 260 7 HOH HOH 538 A HOH 139 7 HOH HOH 539 A HOH 72 7 HOH HOH 540 A HOH 12 7 HOH HOH 541 A HOH 294 7 HOH HOH 542 A HOH 64 7 HOH HOH 543 A HOH 157 7 HOH HOH 544 A HOH 147 7 HOH HOH 545 A HOH 153 7 HOH HOH 546 A HOH 168 7 HOH HOH 547 A HOH 392 7 HOH HOH 548 A HOH 324 7 HOH HOH 549 A HOH 403 7 HOH HOH 550 A HOH 350 7 HOH HOH 551 A HOH 149 7 HOH HOH 552 A HOH 3 7 HOH HOH 553 A HOH 284 7 HOH HOH 554 A HOH 116 7 HOH HOH 555 A HOH 450 7 HOH HOH 556 A HOH 240 7 HOH HOH 557 A HOH 144 7 HOH HOH 558 A HOH 93 7 HOH HOH 559 A HOH 91 7 HOH HOH 560 A HOH 25 7 HOH HOH 561 A HOH 245 7 HOH HOH 562 A HOH 399 7 HOH HOH 563 A HOH 267 7 HOH HOH 564 A HOH 222 7 HOH HOH 565 A HOH 266 7 HOH HOH 566 A HOH 31 7 HOH HOH 567 A HOH 151 7 HOH HOH 568 A HOH 77 7 HOH HOH 569 A HOH 137 7 HOH HOH 570 A HOH 108 7 HOH HOH 571 A HOH 143 7 HOH HOH 572 A HOH 380 7 HOH HOH 573 A HOH 328 7 HOH HOH 574 A HOH 334 7 HOH HOH 575 A HOH 42 7 HOH HOH 576 A HOH 165 7 HOH HOH 577 A HOH 46 7 HOH HOH 578 A HOH 173 7 HOH HOH 579 A HOH 188 7 HOH HOH 580 A HOH 22 7 HOH HOH 581 A HOH 95 7 HOH HOH 582 A HOH 317 7 HOH HOH 583 A HOH 16 7 HOH HOH 584 A HOH 117 7 HOH HOH 585 A HOH 239 7 HOH HOH 586 A HOH 101 7 HOH HOH 587 A HOH 246 7 HOH HOH 588 A HOH 257 7 HOH HOH 589 A HOH 13 7 HOH HOH 590 A HOH 97 7 HOH HOH 591 A HOH 374 7 HOH HOH 592 A HOH 243 7 HOH HOH 593 A HOH 33 7 HOH HOH 594 A HOH 251 7 HOH HOH 595 A HOH 347 7 HOH HOH 596 A HOH 419 7 HOH HOH 597 A HOH 20 7 HOH HOH 598 A HOH 106 7 HOH HOH 599 A HOH 293 7 HOH HOH 600 A HOH 214 7 HOH HOH 601 A HOH 1 7 HOH HOH 602 A HOH 346 7 HOH HOH 603 A HOH 174 7 HOH HOH 604 A HOH 367 7 HOH HOH 605 A HOH 382 7 HOH HOH 606 A HOH 4 7 HOH HOH 607 A HOH 204 7 HOH HOH 608 A HOH 100 7 HOH HOH 609 A HOH 102 7 HOH HOH 610 A HOH 114 7 HOH HOH 611 A HOH 314 7 HOH HOH 612 A HOH 315 7 HOH HOH 613 A HOH 177 7 HOH HOH 614 A HOH 332 7 HOH HOH 615 A HOH 166 7 HOH HOH 616 A HOH 18 7 HOH HOH 617 A HOH 146 7 HOH HOH 618 A HOH 6 7 HOH HOH 619 A HOH 128 7 HOH HOH 620 A HOH 11 7 HOH HOH 621 A HOH 63 7 HOH HOH 622 A HOH 115 7 HOH HOH 623 A HOH 158 7 HOH HOH 624 A HOH 24 7 HOH HOH 625 A HOH 29 7 HOH HOH 626 A HOH 190 7 HOH HOH 627 A HOH 133 7 HOH HOH 628 A HOH 109 7 HOH HOH 629 A HOH 272 7 HOH HOH 630 A HOH 59 7 HOH HOH 631 A HOH 232 7 HOH HOH 632 A HOH 75 7 HOH HOH 633 A HOH 216 7 HOH HOH 634 A HOH 43 7 HOH HOH 635 A HOH 17 7 HOH HOH 636 A HOH 427 7 HOH HOH 637 A HOH 103 7 HOH HOH 638 A HOH 141 7 HOH HOH 639 A HOH 47 7 HOH HOH 640 A HOH 191 7 HOH HOH 641 A HOH 213 7 HOH HOH 642 A HOH 135 7 HOH HOH 643 A HOH 132 7 HOH HOH 644 A HOH 8 7 HOH HOH 645 A HOH 221 7 HOH HOH 646 A HOH 61 7 HOH HOH 647 A HOH 207 7 HOH HOH 648 A HOH 437 7 HOH HOH 649 A HOH 10 7 HOH HOH 650 A HOH 74 7 HOH HOH 651 A HOH 194 7 HOH HOH 652 A HOH 56 7 HOH HOH 653 A HOH 172 7 HOH HOH 654 A HOH 45 7 HOH HOH 655 A HOH 406 7 HOH HOH 656 A HOH 14 7 HOH HOH 657 A HOH 65 7 HOH HOH 658 A HOH 23 7 HOH HOH 659 A HOH 2 7 HOH HOH 660 A HOH 164 7 HOH HOH 661 A HOH 5 7 HOH HOH 662 A HOH 160 7 HOH HOH 663 A HOH 397 7 HOH HOH 664 A HOH 81 7 HOH HOH 665 A HOH 111 7 HOH HOH 666 A HOH 32 7 HOH HOH 667 A HOH 67 7 HOH HOH 668 A HOH 242 7 HOH HOH 669 A HOH 296 7 HOH HOH 670 A HOH 428 7 HOH HOH 671 A HOH 52 7 HOH HOH 672 A HOH 162 7 HOH HOH 673 A HOH 203 7 HOH HOH 674 A HOH 197 7 HOH HOH 675 A HOH 39 7 HOH HOH 676 A HOH 250 7 HOH HOH 677 A HOH 452 7 HOH HOH 678 A HOH 21 7 HOH HOH 679 A HOH 48 7 HOH HOH 680 A HOH 248 7 HOH HOH 681 A HOH 259 7 HOH HOH 682 A HOH 110 7 HOH HOH 683 A HOH 258 7 HOH HOH 684 A HOH 96 7 HOH HOH 685 A HOH 38 7 HOH HOH 686 A HOH 112 7 HOH HOH 687 A HOH 150 7 HOH HOH 688 A HOH 261 7 HOH HOH 689 A HOH 389 7 HOH HOH 690 A HOH 89 7 HOH HOH 691 A HOH 285 7 HOH HOH 692 A HOH 131 7 HOH HOH 693 A HOH 426 7 HOH HOH 694 A HOH 126 7 HOH HOH 695 A HOH 379 7 HOH HOH 696 A HOH 394 7 HOH HOH 697 A HOH 340 7 HOH HOH 698 A HOH 423 7 HOH HOH 699 A HOH 446 7 HOH HOH 700 A HOH 152 7 HOH HOH 701 A HOH 71 7 HOH HOH 702 A HOH 416 7 HOH HOH 703 A HOH 387 7 HOH HOH 704 A HOH 431 7 HOH HOH 705 A HOH 225 7 HOH HOH 706 A HOH 122 7 HOH HOH 707 A HOH 352 7 HOH HOH 708 A HOH 40 7 HOH HOH 709 A HOH 412 7 HOH HOH 710 A HOH 76 7 HOH HOH 711 A HOH 54 7 HOH HOH 712 A HOH 113 7 HOH HOH 713 A HOH 35 7 HOH HOH 714 A HOH 104 7 HOH HOH 715 A HOH 79 7 HOH HOH 716 A HOH 159 7 HOH HOH 717 A HOH 273 7 HOH HOH 718 A HOH 156 7 HOH HOH 719 A HOH 83 7 HOH HOH 720 A HOH 70 7 HOH HOH 721 A HOH 30 7 HOH HOH 722 A HOH 295 7 HOH HOH 723 A HOH 388 7 HOH HOH 724 A HOH 9 7 HOH HOH 725 A HOH 161 7 HOH HOH 726 A HOH 105 7 HOH HOH 727 A HOH 218 7 HOH HOH 728 A HOH 92 7 HOH HOH 729 A HOH 19 7 HOH HOH 730 A HOH 41 7 HOH HOH 731 A HOH 57 7 HOH HOH 732 A HOH 134 7 HOH HOH 733 A HOH 330 7 HOH HOH 734 A HOH 189 7 HOH HOH 735 A HOH 121 7 HOH HOH 736 A HOH 99 7 HOH HOH 737 A HOH 274 7 HOH HOH 738 A HOH 454 7 HOH HOH 739 A HOH 51 7 HOH HOH 740 A HOH 34 7 HOH HOH 741 A HOH 55 7 HOH HOH 742 A HOH 224 7 HOH HOH 743 A HOH 26 7 HOH HOH 744 A HOH 53 7 HOH HOH 745 A HOH 118 7 HOH HOH 746 A HOH 15 7 HOH HOH 747 A HOH 171 7 HOH HOH 748 A HOH 127 7 HOH HOH 749 A HOH 27 7 HOH HOH 750 A HOH 80 7 HOH HOH 751 A HOH 319 7 HOH HOH 752 A HOH 184 7 HOH HOH 753 A HOH 414 7 HOH HOH 754 A HOH 85 7 HOH HOH 755 A HOH 307 7 HOH HOH 756 A HOH 136 7 HOH HOH 757 A HOH 37 7 HOH HOH 758 A HOH 148 7 HOH HOH 759 A HOH 178 7 HOH HOH 760 A HOH 28 7 HOH HOH 761 A HOH 7 7 HOH HOH 762 A HOH 322 7 HOH HOH 763 A HOH 125 7 HOH HOH 764 A HOH 247 7 HOH HOH 765 A HOH 155 7 HOH HOH 766 A HOH 49 7 HOH HOH 767 A HOH 73 7 HOH HOH 768 A HOH 88 7 HOH HOH 769 A HOH 299 7 HOH HOH 770 A HOH 205 7 HOH HOH 771 A HOH 342 7 HOH HOH 772 A HOH 175 7 HOH HOH 773 A HOH 400 7 HOH HOH 774 A HOH 252 7 HOH HOH 775 A HOH 408 7 HOH HOH 776 A HOH 417 7 HOH HOH 777 A HOH 430 7 HOH HOH 778 A HOH 343 7 HOH HOH 779 A HOH 385 7 HOH HOH 780 A HOH 398 7 HOH HOH 781 A HOH 298 7 HOH HOH 782 A HOH 393 7 HOH HOH 783 A HOH 321 7 HOH HOH 784 A HOH 154 7 HOH HOH 785 A HOH 441 7 HOH HOH 786 A HOH 265 7 HOH HOH 787 A HOH 140 7 HOH HOH 788 A HOH 234 7 HOH HOH 789 A HOH 326 7 HOH HOH 790 A HOH 237 7 HOH HOH 791 A HOH 249 7 HOH HOH 792 A HOH 304 7 HOH HOH 793 A HOH 381 7 HOH HOH 794 A HOH 362 7 HOH HOH 795 A HOH 361 7 HOH HOH 796 A HOH 442 7 HOH HOH 797 A HOH 217 7 HOH HOH 798 A HOH 327 7 HOH HOH 799 A HOH 413 7 HOH HOH 800 A HOH 306 7 HOH HOH 801 A HOH 262 7 HOH HOH 802 A HOH 120 7 HOH HOH 803 A HOH 308 7 HOH HOH 804 A HOH 448 7 HOH HOH 805 A HOH 344 7 HOH HOH 806 A HOH 402 7 HOH HOH 807 A HOH 432 7 HOH HOH 808 A HOH 409 7 HOH HOH 809 A HOH 401 7 HOH HOH 810 A HOH 384 7 HOH HOH 811 A HOH 278 7 HOH HOH 812 A HOH 365 7 HOH HOH 813 A HOH 66 7 HOH HOH 814 A HOH 210 7 HOH HOH 815 A HOH 235 7 HOH HOH 816 A HOH 377 7 HOH HOH 817 A HOH 167 7 HOH HOH 818 A HOH 292 7 HOH HOH 819 A HOH 206 7 HOH HOH 820 A HOH 181 7 HOH HOH 821 A HOH 333 7 HOH HOH 822 A HOH 320 7 HOH HOH 823 A HOH 202 7 HOH HOH 824 A HOH 193 7 HOH HOH 825 A HOH 434 7 HOH HOH 826 A HOH 176 7 HOH HOH 827 A HOH 196 7 HOH HOH 828 A HOH 192 7 HOH HOH 829 A HOH 436 7 HOH HOH 830 A HOH 303 7 HOH HOH 831 A HOH 369 7 HOH HOH 832 A HOH 302 7 HOH HOH 833 A HOH 396 7 HOH HOH 834 A HOH 269 7 HOH HOH 835 A HOH 286 7 HOH HOH 836 A HOH 301 7 HOH HOH 837 A HOH 438 7 HOH HOH 838 A HOH 415 7 HOH HOH 839 A HOH 200 7 HOH HOH 840 A HOH 123 7 HOH HOH 841 A HOH 283 7 HOH HOH 842 A HOH 422 7 HOH HOH 843 A HOH 256 7 HOH HOH 844 A HOH 287 7 HOH HOH 845 A HOH 351 7 HOH HOH 846 A HOH 309 7 HOH HOH 847 A HOH 78 7 HOH HOH 848 A HOH 440 7 HOH HOH 849 A HOH 264 7 HOH HOH 850 A HOH 318 7 HOH HOH 851 A HOH 337 7 HOH HOH 852 A HOH 223 7 HOH HOH 853 A HOH 163 7 HOH HOH 854 A HOH 443 7 HOH HOH 855 A HOH 455 7 HOH HOH 856 A HOH 228 7 HOH HOH 857 A HOH 405 7 HOH HOH 858 A HOH 180 7 HOH HOH 859 A HOH 445 7 HOH HOH 860 A HOH 331 7 HOH HOH 861 A HOH 281 7 HOH HOH 862 A HOH 282 7 HOH HOH 863 A HOH 288 7 HOH HOH 864 A HOH 185 7 HOH HOH 865 A HOH 376 7 HOH HOH 866 A HOH 263 7 HOH HOH 867 A HOH 447 7 HOH HOH 868 A HOH 349 7 HOH HOH 869 A HOH 323 7 HOH HOH 870 A HOH 433 7 HOH HOH 871 A HOH 227 7 HOH HOH 872 A HOH 291 7 HOH HOH 873 A HOH 366 7 HOH HOH 874 A HOH 383 7 HOH HOH 101 B HOH 316 7 HOH HOH 102 B HOH 453 7 HOH HOH 103 B n 1 6 A n 2 7 A n 3 8 A n 4 9 A n 5 10 A n 6 11 A n 7 12 A n 8 13 A LEU 14 n 9 LEU 14 A VAL 15 n 10 VAL 15 A PRO 16 n 11 PRO 16 A VAL 17 n 12 VAL 17 A TYR 18 n 13 TYR 18 A ILE 19 n 14 ILE 19 A TYR 20 n 15 TYR 20 A SER 21 n 16 SER 21 A PRO 22 n 17 PRO 22 A GLU 23 n 18 GLU 23 A TYR 24 n 19 TYR 24 A VAL 25 n 20 VAL 25 A SER 26 n 21 SER 26 A MET 27 n 22 MET 27 A CYS 28 n 23 CYS 28 A ASP 29 n 24 ASP 29 A SER 30 n 25 SER 30 A LEU 31 n 26 LEU 31 A ALA 32 n 27 ALA 32 A LYS 33 n 28 LYS 33 A ILE 34 n 29 ILE 34 A PRO 35 n 30 PRO 35 A LYS 36 n 31 LYS 36 A ARG 37 n 32 ARG 37 A ALA 38 n 33 ALA 38 A SER 39 n 34 SER 39 A MET 40 n 35 MET 40 A VAL 41 n 36 VAL 41 A HIS 42 n 37 HIS 42 A SER 43 n 38 SER 43 A LEU 44 n 39 LEU 44 A ILE 45 n 40 ILE 45 A GLU 46 n 41 GLU 46 A ALA 47 n 42 ALA 47 A TYR 48 n 43 TYR 48 A ALA 49 n 44 ALA 49 A LEU 50 n 45 LEU 50 A HIS 51 n 46 HIS 51 A LYS 52 n 47 LYS 52 A GLN 53 n 48 GLN 53 A MET 54 n 49 MET 54 A ARG 55 n 50 ARG 55 A ILE 56 n 51 ILE 56 A VAL 57 n 52 VAL 57 A LYS 58 n 53 LYS 58 A PRO 59 n 54 PRO 59 A LYS 60 n 55 LYS 60 A VAL 61 n 56 VAL 61 A ALA 62 n 57 ALA 62 A SER 63 n 58 SER 63 A MET 64 n 59 MET 64 A GLU 65 n 60 GLU 65 A GLU 66 n 61 GLU 66 A MET 67 n 62 MET 67 A ALA 68 n 63 ALA 68 A THR 69 n 64 THR 69 A PHE 70 n 65 PHE 70 A HIS 71 n 66 HIS 71 A THR 72 n 67 THR 72 A ASP 73 n 68 ASP 73 A ALA 74 n 69 ALA 74 A TYR 75 n 70 TYR 75 A LEU 76 n 71 LEU 76 A GLN 77 n 72 GLN 77 A HIS 78 n 73 HIS 78 A LEU 79 n 74 LEU 79 A GLN 80 n 75 GLN 80 A LYS 81 n 76 LYS 81 A VAL 82 n 77 VAL 82 A SER 83 n 78 SER 83 A GLN 84 n 79 GLN 84 A GLU 85 n 80 GLU 85 A GLY 86 n 81 GLY 86 A n 82 87 A n 83 88 A n 84 89 A n 85 90 A n 86 91 A n 87 92 A n 88 93 A n 89 94 A GLU 95 n 90 GLU 95 A TYR 96 n 91 TYR 96 A GLY 97 n 92 GLY 97 A LEU 98 n 93 LEU 98 A GLY 99 n 94 GLY 99 A TYR 100 n 95 TYR 100 A ASP 101 n 96 ASP 101 A CYS 102 n 97 CYS 102 A PRO 103 n 98 PRO 103 A ALA 104 n 99 ALA 104 A THR 105 n 100 THR 105 A GLU 106 n 101 GLU 106 A GLY 107 n 102 GLY 107 A ILE 108 n 103 ILE 108 A PHE 109 n 104 PHE 109 A ASP 110 n 105 ASP 110 A TYR 111 n 106 TYR 111 A ALA 112 n 107 ALA 112 A ALA 113 n 108 ALA 113 A ALA 114 n 109 ALA 114 A ILE 115 n 110 ILE 115 A GLY 116 n 111 GLY 116 A GLY 117 n 112 GLY 117 A ALA 118 n 113 ALA 118 A THR 119 n 114 THR 119 A ILE 120 n 115 ILE 120 A THR 121 n 116 THR 121 A ALA 122 n 117 ALA 122 A ALA 123 n 118 ALA 123 A GLN 124 n 119 GLN 124 A CYS 125 n 120 CYS 125 A LEU 126 n 121 LEU 126 A ILE 127 n 122 ILE 127 A ASP 128 n 123 ASP 128 A GLY 129 n 124 GLY 129 A MET 130 n 125 MET 130 A CYS 131 n 126 CYS 131 A LYS 132 n 127 LYS 132 A VAL 133 n 128 VAL 133 A ALA 134 n 129 ALA 134 A ILE 135 n 130 ILE 135 A ASN 136 n 131 ASN 136 A TRP 137 n 132 TRP 137 A SER 138 n 133 SER 138 A GLY 139 n 134 GLY 139 A GLY 140 n 135 GLY 140 A TRP 141 n 136 TRP 141 A HIS 142 n 137 HIS 142 A HIS 143 n 138 HIS 143 A ALA 144 n 139 ALA 144 A LYS 145 n 140 LYS 145 A LYS 146 n 141 LYS 146 A ASP 147 n 142 ASP 147 A GLU 148 n 143 GLU 148 A ALA 149 n 144 ALA 149 A SER 150 n 145 SER 150 A GLY 151 n 146 GLY 151 A PHE 152 n 147 PHE 152 A CYS 153 n 148 CYS 153 A TYR 154 n 149 TYR 154 A LEU 155 n 150 LEU 155 A ASN 156 n 151 ASN 156 A ASP 157 n 152 ASP 157 A ALA 158 n 153 ALA 158 A VAL 159 n 154 VAL 159 A LEU 160 n 155 LEU 160 A GLY 161 n 156 GLY 161 A ILE 162 n 157 ILE 162 A LEU 163 n 158 LEU 163 A ARG 164 n 159 ARG 164 A LEU 165 n 160 LEU 165 A ARG 166 n 161 ARG 166 A ARG 167 n 162 ARG 167 A LYS 168 n 163 LYS 168 A PHE 169 n 164 PHE 169 A GLU 170 n 165 GLU 170 A ARG 171 n 166 ARG 171 A ILE 172 n 167 ILE 172 A LEU 173 n 168 LEU 173 A TYR 174 n 169 TYR 174 A VAL 175 n 170 VAL 175 A ASP 176 n 171 ASP 176 A LEU 177 n 172 LEU 177 A ASP 178 n 173 ASP 178 A LEU 179 n 174 LEU 179 A HIS 180 n 175 HIS 180 A HIS 181 n 176 HIS 181 A GLY 182 n 177 GLY 182 A ASP 183 n 178 ASP 183 A GLY 184 n 179 GLY 184 A VAL 185 n 180 VAL 185 A GLU 186 n 181 GLU 186 A ASP 187 n 182 ASP 187 A ALA 188 n 183 ALA 188 A PHE 189 n 184 PHE 189 A SER 190 n 185 SER 190 A PHE 191 n 186 PHE 191 A THR 192 n 187 THR 192 A SER 193 n 188 SER 193 A LYS 194 n 189 LYS 194 A VAL 195 n 190 VAL 195 A MET 196 n 191 MET 196 A THR 197 n 192 THR 197 A VAL 198 n 193 VAL 198 A SER 199 n 194 SER 199 A LEU 200 n 195 LEU 200 A HIS 201 n 196 HIS 201 A LYS 202 n 197 LYS 202 A PHE 203 n 198 PHE 203 A SER 204 n 199 SER 204 A PRO 205 n 200 PRO 205 A GLY 206 n 201 GLY 206 A PHE 207 n 202 PHE 207 A PHE 208 n 203 PHE 208 A PRO 209 n 204 PRO 209 A GLY 210 n 205 GLY 210 A THR 211 n 206 THR 211 A GLY 212 n 207 GLY 212 A ASP 213 n 208 ASP 213 A VAL 214 n 209 VAL 214 A SER 215 n 210 SER 215 A ASP 216 n 211 ASP 216 A VAL 217 n 212 VAL 217 A GLY 218 n 213 GLY 218 A LEU 219 n 214 LEU 219 A GLY 220 n 215 GLY 220 A LYS 221 n 216 LYS 221 A GLY 222 n 217 GLY 222 A ARG 223 n 218 ARG 223 A TYR 224 n 219 TYR 224 A TYR 225 n 220 TYR 225 A SER 226 n 221 SER 226 A VAL 227 n 222 VAL 227 A ASN 228 n 223 ASN 228 A VAL 229 n 224 VAL 229 A PRO 230 n 225 PRO 230 A ILE 231 n 226 ILE 231 A GLN 232 n 227 GLN 232 A ASP 233 n 228 ASP 233 A GLY 234 n 229 GLY 234 A ILE 235 n 230 ILE 235 A GLN 236 n 231 GLN 236 A ASP 237 n 232 ASP 237 A GLU 238 n 233 GLU 238 A LYS 239 n 234 LYS 239 A TYR 240 n 235 TYR 240 A TYR 241 n 236 TYR 241 A GLN 242 n 237 GLN 242 A ILE 243 n 238 ILE 243 A CYS 244 n 239 CYS 244 A GLU 245 n 240 GLU 245 A SER 246 n 241 SER 246 A VAL 247 n 242 VAL 247 A LEU 248 n 243 LEU 248 A LYS 249 n 244 LYS 249 A GLU 250 n 245 GLU 250 A VAL 251 n 246 VAL 251 A TYR 252 n 247 TYR 252 A GLN 253 n 248 GLN 253 A ALA 254 n 249 ALA 254 A PHE 255 n 250 PHE 255 A ASN 256 n 251 ASN 256 A PRO 257 n 252 PRO 257 A LYS 258 n 253 LYS 258 A ALA 259 n 254 ALA 259 A VAL 260 n 255 VAL 260 A VAL 261 n 256 VAL 261 A LEU 262 n 257 LEU 262 A GLN 263 n 258 GLN 263 A LEU 264 n 259 LEU 264 A GLY 265 n 260 GLY 265 A ALA 266 n 261 ALA 266 A ASP 267 n 262 ASP 267 A THR 268 n 263 THR 268 A ILE 269 n 264 ILE 269 A ALA 270 n 265 ALA 270 A GLY 271 n 266 GLY 271 A ASP 272 n 267 ASP 272 A PRO 273 n 268 PRO 273 A MET 274 n 269 MET 274 A CYS 275 n 270 CYS 275 A SER 276 n 271 SER 276 A PHE 277 n 272 PHE 277 A ASN 278 n 273 ASN 278 A MET 279 n 274 MET 279 A THR 280 n 275 THR 280 A PRO 281 n 276 PRO 281 A VAL 282 n 277 VAL 282 A GLY 283 n 278 GLY 283 A ILE 284 n 279 ILE 284 A GLY 285 n 280 GLY 285 A LYS 286 n 281 LYS 286 A CYS 287 n 282 CYS 287 A LEU 288 n 283 LEU 288 A LYS 289 n 284 LYS 289 A TYR 290 n 285 TYR 290 A ILE 291 n 286 ILE 291 A LEU 292 n 287 LEU 292 A GLN 293 n 288 GLN 293 A TRP 294 n 289 TRP 294 A GLN 295 n 290 GLN 295 A LEU 296 n 291 LEU 296 A ALA 297 n 292 ALA 297 A THR 298 n 293 THR 298 A LEU 299 n 294 LEU 299 A ILE 300 n 295 ILE 300 A LEU 301 n 296 LEU 301 A GLY 302 n 297 GLY 302 A GLY 303 n 298 GLY 303 A GLY 304 n 299 GLY 304 A GLY 305 n 300 GLY 305 A TYR 306 n 301 TYR 306 A ASN 307 n 302 ASN 307 A LEU 308 n 303 LEU 308 A ALA 309 n 304 ALA 309 A ASN 310 n 305 ASN 310 A THR 311 n 306 THR 311 A ALA 312 n 307 ALA 312 A ARG 313 n 308 ARG 313 A CYS 314 n 309 CYS 314 A TRP 315 n 310 TRP 315 A THR 316 n 311 THR 316 A TYR 317 n 312 TYR 317 A LEU 318 n 313 LEU 318 A THR 319 n 314 THR 319 A GLY 320 n 315 GLY 320 A VAL 321 n 316 VAL 321 A ILE 322 n 317 ILE 322 A LEU 323 n 318 LEU 323 A GLY 324 n 319 GLY 324 A LYS 325 n 320 LYS 325 A THR 326 n 321 THR 326 A LEU 327 n 322 LEU 327 A SER 328 n 323 SER 328 A SER 329 n 324 SER 329 A GLU 330 n 325 GLU 330 A ILE 331 n 326 ILE 331 A PRO 332 n 327 PRO 332 A ASP 333 n 328 ASP 333 A HIS 334 n 329 HIS 334 A GLU 335 n 330 GLU 335 A PHE 336 n 331 PHE 336 A PHE 337 n 332 PHE 337 A THR 338 n 333 THR 338 A ALA 339 n 334 ALA 339 A TYR 340 n 335 TYR 340 A GLY 341 n 336 GLY 341 A PRO 342 n 337 PRO 342 A ASP 343 n 338 ASP 343 A TYR 344 n 339 TYR 344 A VAL 345 n 340 VAL 345 A LEU 346 n 341 LEU 346 A GLU 347 n 342 GLU 347 A ILE 348 n 343 ILE 348 A THR 349 n 344 THR 349 A PRO 350 n 345 PRO 350 A SER 351 n 346 SER 351 A CYS 352 n 347 CYS 352 A ARG 353 n 348 ARG 353 A PRO 354 n 349 PRO 354 A ASP 355 n 350 ASP 355 A ARG 356 n 351 ARG 356 A ASN 357 n 352 ASN 357 A GLU 358 n 353 GLU 358 A PRO 359 n 354 PRO 359 A HIS 360 n 355 HIS 360 A ARG 361 n 356 ARG 361 A ILE 362 n 357 ILE 362 A GLN 363 n 358 GLN 363 A GLN 364 n 359 GLN 364 A ILE 365 n 360 ILE 365 A LEU 366 n 361 LEU 366 A ASN 367 n 362 ASN 367 A TYR 368 n 363 TYR 368 A ILE 369 n 364 ILE 369 A LYS 370 n 365 LYS 370 A GLY 371 n 366 GLY 371 A ASN 372 n 367 ASN 372 A LEU 373 n 368 LEU 373 A LYS 374 n 369 LYS 374 A n 370 375 A n 371 376 A n 372 377 A TXG 1 n 1 PHE 1 B TXG 1 n 2 PHE 2 B TXG 1 n 3 CPI 3 B TXG 1 n 4 5OM 4 B author_and_software_defined_assembly PISA 2 dimeric mass spectrometry 3610 -13 14100 A ASP 176 A O ASP 171 1_555 A K 402 D K K 1_555 A ASP 176 A OD1 ASP 171 1_555 73.0 A ASP 176 A O ASP 171 1_555 A K 402 D K K 1_555 A ASP 178 A O ASP 173 1_555 107.9 A ASP 176 A OD1 ASP 171 1_555 A K 402 D K K 1_555 A ASP 178 A O ASP 173 1_555 104.3 A ASP 176 A O ASP 171 1_555 A K 402 D K K 1_555 A HIS 180 A O HIS 175 1_555 160.5 A ASP 176 A OD1 ASP 171 1_555 A K 402 D K K 1_555 A HIS 180 A O HIS 175 1_555 88.6 A ASP 178 A O ASP 173 1_555 A K 402 D K K 1_555 A HIS 180 A O HIS 175 1_555 82.3 A ASP 176 A O ASP 171 1_555 A K 402 D K K 1_555 A SER 199 A OG SER 194 1_555 85.2 A ASP 176 A OD1 ASP 171 1_555 A K 402 D K K 1_555 A SER 199 A OG SER 194 1_555 101.9 A ASP 178 A O ASP 173 1_555 A K 402 D K K 1_555 A SER 199 A OG SER 194 1_555 153.1 A HIS 180 A O HIS 175 1_555 A K 402 D K K 1_555 A SER 199 A OG SER 194 1_555 92.8 A ASP 176 A O ASP 171 1_555 A K 402 D K K 1_555 A LEU 200 A O LEU 195 1_555 78.6 A ASP 176 A OD1 ASP 171 1_555 A K 402 D K K 1_555 A LEU 200 A O LEU 195 1_555 147.4 A ASP 178 A O ASP 173 1_555 A K 402 D K K 1_555 A LEU 200 A O LEU 195 1_555 69.5 A HIS 180 A O HIS 175 1_555 A K 402 D K K 1_555 A LEU 200 A O LEU 195 1_555 120.8 A SER 199 A OG SER 194 1_555 A K 402 D K K 1_555 A LEU 200 A O LEU 195 1_555 91.1 A ASP 178 A OD2 ASP 173 1_555 A ZN 401 C ZN ZN 1_555 A HIS 180 A ND1 HIS 175 1_555 105.2 A ASP 178 A OD2 ASP 173 1_555 A ZN 401 C ZN ZN 1_555 A ASP 267 A OD2 ASP 262 1_555 112.1 A HIS 180 A ND1 HIS 175 1_555 A ZN 401 C ZN ZN 1_555 A ASP 267 A OD2 ASP 262 1_555 97.9 A ASP 178 A OD2 ASP 173 1_555 A ZN 401 C ZN ZN 1_555 B 5OM 4 B O01 5OM 4 1_555 125.6 A HIS 180 A ND1 HIS 175 1_555 A ZN 401 C ZN ZN 1_555 B 5OM 4 B O01 5OM 4 1_555 113.3 A ASP 267 A OD2 ASP 262 1_555 A ZN 401 C ZN ZN 1_555 B 5OM 4 B O01 5OM 4 1_555 99.4 A ASP 178 A OD2 ASP 173 1_555 A ZN 401 C ZN ZN 1_555 B 5OM 4 B O02 5OM 4 1_555 86.5 A HIS 180 A ND1 HIS 175 1_555 A ZN 401 C ZN ZN 1_555 B 5OM 4 B O02 5OM 4 1_555 87.2 A ASP 267 A OD2 ASP 262 1_555 A ZN 401 C ZN ZN 1_555 B 5OM 4 B O02 5OM 4 1_555 158.3 B 5OM 4 B O01 5OM 4 1_555 A ZN 401 C ZN ZN 1_555 B 5OM 4 B O02 5OM 4 1_555 59.6 A PHE 189 A O PHE 184 1_555 A K 403 E K K 1_555 A THR 192 A O THR 187 1_555 78.7 A PHE 189 A O PHE 184 1_555 A K 403 E K K 1_555 A VAL 195 A O VAL 190 1_555 114.7 A THR 192 A O THR 187 1_555 A K 403 E K K 1_555 A VAL 195 A O VAL 190 1_555 82.3 A PHE 189 A O PHE 184 1_555 A K 403 E K K 1_555 A TYR 225 A O TYR 220 1_555 156.3 A THR 192 A O THR 187 1_555 A K 403 E K K 1_555 A TYR 225 A O TYR 220 1_555 121.0 A VAL 195 A O VAL 190 1_555 A K 403 E K K 1_555 A TYR 225 A O TYR 220 1_555 83.1 A PHE 189 A O PHE 184 1_555 A K 403 E K K 1_555 A HOH 590 R O HOH 1_555 90.0 A THR 192 A O THR 187 1_555 A K 403 E K K 1_555 A HOH 590 R O HOH 1_555 97.0 A VAL 195 A O VAL 190 1_555 A K 403 E K K 1_555 A HOH 590 R O HOH 1_555 154.4 A TYR 225 A O TYR 220 1_555 A K 403 E K K 1_555 A HOH 590 R O HOH 1_555 75.3 A PHE 189 A O PHE 184 1_555 A K 403 E K K 1_555 A HOH 730 R O HOH 1_555 72.8 A THR 192 A O THR 187 1_555 A K 403 E K K 1_555 A HOH 730 R O HOH 1_555 151.4 A VAL 195 A O VAL 190 1_555 A K 403 E K K 1_555 A HOH 730 R O HOH 1_555 111.9 A TYR 225 A O TYR 220 1_555 A K 403 E K K 1_555 A HOH 730 R O HOH 1_555 86.3 A HOH 590 R O HOH 1_555 A K 403 E K K 1_555 A HOH 730 R O HOH 1_555 80.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ARG 55 A O ARG 50 A N TYR 18 A N TYR 13 A N ILE 19 A N ILE 14 A O ILE 135 A O ILE 130 A N ASN 136 A N ASN 131 A O ILE 300 A O ILE 295 A O LEU 299 A O LEU 294 A N LEU 262 A N LEU 257 A O GLN 263 A O GLN 258 A N VAL 175 A N VAL 170 A N TYR 174 A N TYR 169 A O MET 196 A O MET 191 A N THR 197 A N THR 192 A O VAL 227 A O VAL 222 1 A CG LEU 14 A CG LEU 9 1 Y 1 A CD1 LEU 14 A CD1 LEU 9 1 Y 1 A CD2 LEU 14 A CD2 LEU 9 1 Y 1 A CG1 VAL 15 A CG1 VAL 10 1 Y 1 A CG2 VAL 15 A CG2 VAL 10 1 Y 1 A CD LYS 58 A CD LYS 53 1 Y 1 A CE LYS 58 A CE LYS 53 1 Y 1 A NZ LYS 58 A NZ LYS 53 1 Y 1 A CG LYS 60 A CG LYS 55 1 Y 1 A CD LYS 60 A CD LYS 55 1 Y 1 A CE LYS 60 A CE LYS 55 1 Y 1 A NZ LYS 60 A NZ LYS 55 1 Y 1 A CD GLU 106 A CD GLU 101 1 Y 1 A OE1 GLU 106 A OE1 GLU 101 1 Y 1 A OE2 GLU 106 A OE2 GLU 101 1 Y 1 A SER 6 A SER 1 1 Y 1 A ASN 7 A ASN 2 1 Y 1 A ALA 8 A ALA 3 1 Y 1 A ASP 9 A ASP 4 1 Y 1 A SER 10 A SER 5 1 Y 1 A GLY 11 A GLY 6 1 Y 1 A GLN 12 A GLN 7 1 Y 1 A SER 13 A SER 8 1 Y 1 A ASP 87 A ASP 82 1 Y 1 A ASP 88 A ASP 83 1 Y 1 A ASP 89 A ASP 84 1 Y 1 A HIS 90 A HIS 85 1 Y 1 A PRO 91 A PRO 86 1 Y 1 A ASP 92 A ASP 87 1 Y 1 A SER 93 A SER 88 1 Y 1 A ILE 94 A ILE 89 1 Y 1 A HIS 375 A HIS 370 1 Y 1 A VAL 376 A VAL 371 1 Y 1 A VAL 377 A VAL 372 1 Y 1 A A HH HD1 TYR HIS 18 42 1.14 1 A A HD21 O ASN HOH 136 512 1.56 1 A A HZ1 O LYS HOH 36 509 1.56 1 A A O2 O EDO HOH 412 502 2.02 1 A A O O HOH HOH 656 806 2.16 1 A ILE 34 -142.77 52.86 1 A TYR 100 -104.17 -96.34 1 A GLU 148 B -164.00 118.05 1 A PHE 152 75.86 -1.51 1 A TYR 224 81.77 2.23 1 A SER 276 -121.47 -73.23 1 A SER 276 -122.56 -73.23 0.1433 0.1213 0.1224 1.237 41.286 4939 95812 5.15 99.05 0.10 1 FREE R-VALUE 1.98 MOLECULAR REPLACEMENT 13.23 0.90 1.11 3EWF 1.237 41.286 377 3215 100 0 2738 0.009 3099 1.033 4215 22.330 1130 0.081 451 0.008 550 0.2474 0.2223 1.2510 162 3048 100.00 0.2606 0.2118 1.2658 136 3045 100.00 0.2507 0.1940 1.2812 170 3123 100.00 0.2250 0.1883 1.2974 196 3008 100.00 0.1940 0.1802 1.3145 160 3046 100.00 0.2028 0.1631 1.3325 202 2947 99.00 0.1820 0.1597 1.3515 155 2937 95.00 0.1854 0.1498 1.3717 159 3027 98.00 0.1799 0.1395 1.3932 178 3031 100.00 0.1925 0.1355 1.4160 182 3082 100.00 0.1671 0.1315 1.4404 164 3001 100.00 0.1505 0.1212 1.4666 150 3063 100.00 0.1434 0.1075 1.4948 176 3052 99.00 0.1249 0.1004 1.5253 170 2993 99.00 0.1258 0.0999 1.5585 122 3013 97.00 0.1524 0.1018 1.5948 176 2886 94.00 0.1335 0.0984 1.6346 170 3058 100.00 0.1272 0.0942 1.6788 179 3026 100.00 0.1192 0.0951 1.7282 142 3074 100.00 0.1372 0.0968 1.7840 150 3095 100.00 0.1369 0.1032 1.8478 140 3060 100.00 0.1170 0.1024 1.9218 150 3034 99.00 0.1174 0.1073 2.0092 197 2902 96.00 0.1398 0.1066 2.1152 140 3114 100.00 0.1373 0.1107 2.2477 202 2985 100.00 0.1267 0.1077 2.4212 160 3074 100.00 0.1386 0.1164 2.6648 160 3055 100.00 0.1442 0.1245 3.0503 158 2990 98.00 0.1249 0.1260 3.8426 155 3082 100.00 0.1444 0.1341 41.3085 178 3022 100.00 1.237 44.15 5VI6 95873 0.999 0.046 0.035 1 13.7 4.8 99.1 1 refinement PHENIX (1.10.1_2155) data reduction iMOSFLM data scaling Aimless phasing PHASER N Crystal structure of histone deacetylase 8 in complex with trapoxin A 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N 5 N N 5 N N 5 N N 5 N N 5 N N 5 N N 5 N N 5 N N 5 N N 6 N N 6 N N 7 N N 7 N N A SER 21 A SER 16 HELX_P A ASP 29 A ASP 24 1 AA1 9 A LYS 36 A LYS 31 HELX_P A TYR 48 A TYR 43 1 AA2 13 A ALA 49 A ALA 44 HELX_P A MET 54 A MET 49 5 AA3 6 A SER 63 A SER 58 HELX_P A ALA 68 A ALA 63 1 AA4 6 A THR 72 A THR 67 HELX_P A GLU 85 A GLU 80 1 AA5 14 A GLY 107 A GLY 102 HELX_P A ASP 128 A ASP 123 1 AA6 22 A ASN 156 A ASN 151 HELX_P A ARG 166 A ARG 161 1 AA7 11 A GLY 182 A GLY 177 HELX_P A PHE 189 A PHE 184 1 AA8 8 A LEU 219 A LEU 214 HELX_P A ARG 223 A ARG 218 5 AA9 5 A GLN 236 A GLN 231 HELX_P A ASN 256 A ASN 251 1 AB1 21 A GLY 265 A GLY 260 HELX_P A ILE 269 A ILE 264 5 AB2 5 A THR 280 A THR 275 HELX_P A GLN 293 A GLN 288 1 AB3 14 A ASN 307 A ASN 302 HELX_P A GLY 324 A GLY 319 1 AB4 18 A PHE 336 A PHE 331 HELX_P A GLY 341 A GLY 336 5 AB5 6 A GLU 358 A GLU 353 HELX_P A LEU 373 A LEU 368 1 AB6 16 covale 1.368 both B PHE 1 B N PHE 1 1_555 B 5OM 4 B C 5OM 4 1_555 covale 1.410 both B PHE 2 B C PHE 2 1_555 B CPI 3 B N CPI 3 1_555 covale 1.372 both B CPI 3 B C CPI 3 1_555 B 5OM 4 B N 5OM 4 1_555 metalc 2.780 A ASP 176 A O ASP 171 1_555 A K 402 D K K 1_555 metalc 2.676 A ASP 176 A OD1 ASP 171 1_555 A K 402 D K K 1_555 metalc 1.963 A ASP 178 A OD2 ASP 173 1_555 A ZN 401 C ZN ZN 1_555 metalc 2.680 A ASP 178 A O ASP 173 1_555 A K 402 D K K 1_555 metalc 2.067 A HIS 180 A ND1 HIS 175 1_555 A ZN 401 C ZN ZN 1_555 metalc 2.759 A HIS 180 A O HIS 175 1_555 A K 402 D K K 1_555 metalc 2.614 A PHE 189 A O PHE 184 1_555 A K 403 E K K 1_555 metalc 2.848 A THR 192 A O THR 187 1_555 A K 403 E K K 1_555 metalc 2.593 A VAL 195 A O VAL 190 1_555 A K 403 E K K 1_555 metalc 2.881 A SER 199 A OG SER 194 1_555 A K 402 D K K 1_555 metalc 2.654 A LEU 200 A O LEU 195 1_555 A K 402 D K K 1_555 metalc 2.990 A TYR 225 A O TYR 220 1_555 A K 403 E K K 1_555 metalc 1.966 A ASP 267 A OD2 ASP 262 1_555 A ZN 401 C ZN ZN 1_555 metalc 1.925 A ZN 401 C ZN ZN 1_555 B 5OM 4 B O01 5OM 4 1_555 metalc 2.487 A ZN 401 C ZN ZN 1_555 B 5OM 4 B O02 5OM 4 1_555 metalc 2.750 A K 403 E K K 1_555 A HOH 590 R O HOH 1_555 metalc 2.780 A K 403 E K K 1_555 A HOH 730 R O HOH 1_555 HYDROLASE/HYDROLASE INHIBITOR HDAC, epigenetics, natural product inhibitor, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR complex A PHE 208 A PHE 203 1 A PRO 209 A PRO 204 -1.25 A GLY 341 A GLY 336 1 A PRO 342 A PRO 337 4.06 B PHE 2 B PHE 2 1 B CPI 3 B CPI 3 5.87 HDAC8_HUMAN UNP 1 8 Q9BY41 ADSGQSLVPVYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGD DDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRR KFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESV LKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTL SSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHVV 5VI6 PDB 2 1 5VI6 8 377 5VI6 8 377 Q9BY41 A 1 3 372 1 4 5VI6 1 4 5VI6 B 2 1 4 1 expression tag SER 6 5VI6 A Q9BY41 UNP 1 1 expression tag ASN 7 5VI6 A Q9BY41 UNP 2 8 parallel parallel parallel parallel parallel parallel parallel A ARG 55 A ARG 50 A VAL 57 A VAL 52 A VAL 17 A VAL 12 A ILE 19 A ILE 14 A VAL 133 A VAL 128 A ASN 136 A ASN 131 A ALA 297 A ALA 292 A LEU 301 A LEU 296 A ALA 259 A ALA 254 A GLN 263 A GLN 258 A ILE 172 A ILE 167 A ASP 176 A ASP 171 A VAL 195 A VAL 190 A LYS 202 A LYS 197 A SER 226 A SER 221 A ILE 231 A ILE 226 binding site for residue ZN A 401 A ZN 401 Software 4 binding site for residue K A 402 A K 402 Software 5 binding site for residue K A 403 A K 403 Software 6 binding site for residue EDO A 404 A EDO 404 Software 5 binding site for residue EDO A 405 A EDO 405 Software 3 binding site for residue EDO A 406 A EDO 406 Software 5 binding site for residue EDO A 407 A EDO 407 Software 1 binding site for residue EDO A 408 A EDO 408 Software 9 binding site for residue EDO A 409 A EDO 409 Software 5 binding site for residue EDO A 410 A EDO 410 Software 8 binding site for residue EDO A 411 A EDO 411 Software 6 binding site for residue EDO A 412 A EDO 412 Software 9 binding site for residue EDO A 413 A EDO 413 Software 3 binding site for residue DIO A 414 A DIO 414 Software 6 binding site for residue DIO A 415 A DIO 415 Software 4 A ASP 178 A ASP 173 4 1_555 A HIS 180 A HIS 175 4 1_555 A ASP 267 A ASP 262 4 1_555 B 5OM 4 B 5OM 4 4 1_555 A ASP 176 A ASP 171 5 1_555 A ASP 178 A ASP 173 5 1_555 A HIS 180 A HIS 175 5 1_555 A SER 199 A SER 194 5 1_555 A LEU 200 A LEU 195 5 1_555 A PHE 189 A PHE 184 6 1_555 A THR 192 A THR 187 6 1_555 A VAL 195 A VAL 190 6 1_555 A TYR 225 A TYR 220 6 1_555 A HOH 590 R HOH 6 1_555 A HOH 730 R HOH 6 1_555 A SER 63 A SER 58 5 1_555 A MET 64 A MET 59 5 1_555 A ASP 355 A ASP 350 5 1_655 A HOH 616 R HOH 5 1_555 A HOH 686 R HOH 5 1_555 A ARG 166 A ARG 161 3 1_555 A ARG 167 A ARG 162 3 1_555 A GLU 170 A GLU 165 3 1_555 A GLU 23 A GLU 18 5 1_555 A TYR 24 A TYR 19 5 1_555 A ALA 114 A ALA 109 5 1_555 A HOH 601 R HOH 5 1_555 A HOH 631 R HOH 5 1_555 A MET 274 A MET 269 1 1_555 A PRO 281 A PRO 276 9 1_555 A VAL 282 A VAL 277 9 1_555 A ARG 313 A ARG 308 9 1_555 A TYR 317 A TYR 312 9 1_555 A LEU 346 A LEU 341 9 1_555 A GLU 347 A GLU 342 9 1_555 A ILE 348 A ILE 343 9 1_555 A HOH 531 R HOH 9 1_555 A HOH 604 R HOH 9 1_555 A GLY 206 A GLY 201 5 1_555 A PHE 207 A PHE 202 5 1_555 A PHE 208 A PHE 203 5 1_555 A PRO 209 A PRO 204 5 1_555 A GLY 210 A GLY 205 5 1_555 A HIS 143 A HIS 138 8 1_555 A LYS 145 A LYS 140 8 1_555 A SER 150 A SER 145 8 1_555 A ASP 183 A ASP 178 8 1_555 A PHE 208 A PHE 203 8 1_555 A PRO 209 A PRO 204 8 1_555 A HOH 548 R HOH 8 1_555 A HOH 632 R HOH 8 1_555 A TYR 111 A TYR 106 6 1_555 A TRP 141 A TRP 136 6 1_555 A PHE 152 A PHE 147 6 1_555 A CYS 153 A CYS 148 6 1_555 A TYR 154 A TYR 149 6 1_555 A LEU 155 A LEU 150 6 1_555 A CYS 28 A CYS 23 9 1_555 A ILE 34 A ILE 29 9 1_555 A ARG 37 A ARG 32 9 1_555 A ALA 38 A ALA 33 9 1_555 A SER 138 A SER 133 9 1_555 A HOH 502 R HOH 9 1_555 A HOH 505 R HOH 9 1_555 A HOH 519 R HOH 9 1_555 A HOH 657 R HOH 9 1_555 A ARG 361 A ARG 356 3 1_555 A GLN 364 A GLN 359 3 1_555 A TYR 368 A TYR 363 3 1_555 A TYR 224 A TYR 219 6 1_555 A TYR 225 A TYR 220 6 1_555 A ALA 254 A ALA 249 6 1_555 A ASN 372 A ASN 367 6 1_555 A LEU 373 A LEU 368 6 1_555 A HOH 681 R HOH 6 1_555 A THR 69 A THR 64 4 1_555 A LEU 163 A LEU 158 4 1_555 A ALA 188 A ALA 183 4 1_555 A PHE 189 A PHE 184 4 1_555 145 P 32