0.015645
0.009032
0.000000
0.000000
0.018065
0.000000
0.000000
0.000000
0.010941
0.00000
0.00000
0.00000
Judge, R.A.
Souers, A.J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
63.920
63.920
91.400
C46 H46 N6 O5
762.895
7-(3-{[4-(4-acetylpiperazin-1-yl)phenoxy]methyl}-1,5-dimethyl-1H-pyrazol-4-yl)-3-{3-[(naphthalen-1-yl)oxy]propyl}-1-[(pyridin-3-yl)methyl]-1H-indole-2-carboxylic acid
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
Y
1
N
C
Y
2
N
C
Y
3
N
C
Y
4
N
C
Y
5
N
C
Y
6
N
C
Y
7
N
C
Y
8
N
C
Y
9
N
C
Y
10
N
C
Y
11
N
C
Y
12
N
C
Y
13
N
C
Y
14
N
C
Y
15
N
C
Y
16
N
C
Y
17
N
C
Y
18
N
C
Y
19
N
C
Y
20
N
C
Y
21
N
C
Y
22
N
C
Y
23
N
C
Y
24
N
C
Y
25
N
C
Y
26
N
C
Y
27
N
C
Y
28
N
C
Y
29
N
C
Y
30
N
C
Y
31
N
C
Y
32
N
C
N
33
N
C
N
34
N
C
N
35
N
C
N
36
N
C
N
37
N
C
N
38
N
C
N
39
N
C
N
40
N
C
N
41
N
C
N
42
N
C
N
43
N
C
N
44
N
C
N
45
N
C
N
46
N
C
Y
47
N
N
Y
48
N
N
Y
49
N
N
Y
50
N
N
N
51
N
N
N
52
N
N
N
53
N
O
N
54
N
O
N
55
N
O
N
56
N
O
N
57
N
O
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
N
N
105
S
C
N
106
N
C
N
107
N
O
N
108
N
C
N
109
N
O
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
H
N
117
N
N
N
118
S
C
N
119
N
C
N
120
N
O
N
121
N
C
N
122
N
C
N
123
N
C
N
124
N
N
N
125
N
C
N
126
N
N
N
127
N
N
N
128
N
O
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
S
C
N
146
N
C
N
147
N
O
N
148
N
C
N
149
N
C
N
150
N
O
N
151
N
N
N
152
N
O
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
N
C
N
166
N
C
N
167
N
O
N
168
N
O
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
N
N
178
R
C
N
179
N
C
N
180
N
O
N
181
N
C
N
182
N
S
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
O
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
N
N
212
S
C
N
213
N
C
N
214
N
O
N
215
N
C
N
216
N
C
N
217
N
C
N
218
N
O
N
219
N
O
N
220
N
O
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
N
C
N
232
N
C
N
233
N
O
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
N
N
241
S
C
N
242
N
C
N
243
N
O
N
244
N
C
Y
245
N
C
Y
246
N
N
Y
247
N
C
Y
248
N
C
Y
249
N
N
N
250
N
O
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
N
N
265
S
C
N
266
N
C
N
267
N
O
N
268
S
C
N
269
N
C
N
270
N
C
N
271
N
C
N
272
N
O
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
N
N
287
S
C
N
288
N
C
N
289
N
O
N
290
N
C
N
291
N
C
N
292
N
C
N
293
N
C
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
N
N
309
S
C
N
310
N
C
N
311
N
O
N
312
N
C
N
313
N
C
N
314
N
C
N
315
N
C
N
316
N
N
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
N
N
334
S
C
N
335
N
C
N
336
N
O
N
337
N
C
N
338
N
C
N
339
N
S
N
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
N
N
354
S
C
N
355
N
C
N
356
N
O
N
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
N
364
N
O
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
N
N
377
S
C
N
378
N
C
N
379
N
O
N
380
N
C
N
381
N
C
N
382
N
C
N
383
N
O
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
N
N
394
S
C
N
395
N
C
N
396
N
O
N
397
N
C
N
398
N
O
N
399
N
O
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
N
N
408
S
C
N
409
N
C
N
410
N
O
N
411
R
C
N
412
N
O
N
413
N
C
N
414
N
O
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
N
N
425
S
C
N
426
N
C
N
427
N
O
N
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
N
Y
433
N
C
Y
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
N
438
N
O
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
N
N
452
S
C
N
453
N
C
N
454
N
O
N
455
N
C
Y
456
N
C
Y
457
N
C
Y
458
N
C
Y
459
N
C
Y
460
N
C
Y
461
N
C
N
462
N
O
N
463
N
O
N
464
N
H
N
465
N
H
N
466
N
H
N
467
N
H
N
468
N
H
N
469
N
H
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
N
N
476
S
C
N
477
N
C
N
478
N
O
N
479
N
C
N
480
N
C
N
481
N
C
N
482
N
O
N
483
N
H
N
484
N
H
N
485
N
H
N
486
N
H
N
487
N
H
N
488
N
H
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
ZN
Y
1
N
doub
Y
2
N
sing
Y
3
N
sing
Y
4
N
doub
Y
5
N
doub
Y
6
N
sing
Y
7
N
sing
Y
8
N
sing
Y
9
N
doub
Y
10
N
doub
Y
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
Y
17
N
doub
Y
18
N
sing
Y
19
N
sing
Y
20
N
doub
N
21
N
doub
Y
22
N
sing
Y
23
N
doub
N
24
N
sing
N
25
N
sing
Y
26
N
sing
Y
27
N
sing
Y
28
N
doub
Y
29
N
sing
N
30
N
sing
N
31
N
sing
Y
32
N
doub
Y
33
N
sing
Y
34
N
sing
N
35
N
sing
N
36
N
doub
Y
37
N
doub
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
Y
43
N
doub
Y
44
N
sing
N
45
N
sing
Y
46
N
doub
Y
47
N
doub
Y
48
N
sing
Y
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
Y
53
N
sing
Y
54
N
sing
N
55
N
sing
N
56
N
sing
Y
57
N
doub
N
58
N
sing
Y
59
N
doub
N
60
N
sing
Y
61
N
doub
Y
62
N
sing
Y
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
doub
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
doub
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
doub
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
doub
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
doub
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
Y
250
N
sing
Y
251
N
doub
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
doub
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
doub
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
doub
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
doub
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
Y
358
N
doub
Y
359
N
sing
Y
360
N
sing
N
361
N
sing
Y
362
N
doub
N
363
N
sing
Y
364
N
doub
N
365
N
sing
Y
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
doub
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
doub
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
sing
N
406
N
doub
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
doub
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
Y
427
N
doub
Y
428
N
sing
Y
429
N
sing
N
430
N
sing
Y
431
N
doub
Y
432
N
sing
Y
433
N
sing
N
434
N
sing
Y
435
N
sing
Y
436
N
doub
N
437
N
sing
Y
438
N
doub
N
439
N
sing
Y
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
doub
N
451
N
sing
N
452
N
sing
N
453
N
sing
N
454
N
sing
Y
455
N
doub
Y
456
N
sing
Y
457
N
sing
N
458
N
sing
Y
459
N
doub
N
460
N
sing
Y
461
N
doub
N
462
N
sing
Y
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
doub
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
N
485
N
sing
US
J. Med. Chem.
JMCMAR
0151
1520-4804
58
2180
2194
10.1021/jm501258m
25679114
Structure-guided design of a series of MCL-1 inhibitors with high affinity and selectivity.
2015
10.2210/pdb5vkc/pdb
pdb_00005vkc
100
1
CCD
2008-06-13
MARMOSAIC 300 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
0.97856
1.0
21-ID-G
APS
0.97856
SYNCHROTRON
APS BEAMLINE 21-ID-G
17882.391
Induced myeloid leukemia cell differentiation protein Mcl-1
2
man
polymer
762.895
7-(3-{[4-(4-acetylpiperazin-1-yl)phenoxy]methyl}-1,5-dimethyl-1H-pyrazol-4-yl)-3-{3-[(naphthalen-1-yl)oxy]propyl}-1-[(pyridin-3-yl)methyl]-1H-indole-2-carboxylic acid
2
syn
non-polymer
65.409
ZINC ION
10
syn
non-polymer
18.015
water
124
nat
water
Bcl-2-like protein 3,Bcl2-L-3,Bcl-2-related protein EAT/mcl1,mcl1/EAT
no
no
GSMDLYRQSLEIISRYLREQATGAKDTKPMGRSGATSRKALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRV
MIHVFSDGVTNWGRIVTLISFGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDWLVKQRGWDGFVEFFHVEDLEG
GSMDLYRQSLEIISRYLREQATGAKDTKPMGRSGATSRKALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRV
MIHVFSDGVTNWGRIVTLISFGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDWLVKQRGWDGFVEFFHVEDLEG
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Human
sample
1
157
MCL1, BCL2L3
9606
Homo sapiens
562
Escherichia coli
Biological sequence
1
3.11
60.47
VAPOR DIFFUSION
8.8
7%(w/v) PEG 8000, 0.1M Tris-HCl, pH 8.8, 0.2M zinc acetate
277
diffrn_detector
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
repository
Initial release
Data collection
Data collection
Database references
Derived calculations
1
0
2017-05-03
1
1
2017-08-23
1
2
2024-03-13
_diffrn_detector.type
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
N
RCSB
Y
RCSB
2017-04-21
REL
REL
1
A
O
HOH
556
11.98
9EA
7-(3-{[4-(4-acetylpiperazin-1-yl)phenoxy]methyl}-1,5-dimethyl-1H-pyrazol-4-yl)-3-{3-[(naphthalen-1-yl)oxy]propyl}-1-[(pyridin-3-yl)methyl]-1H-indole-2-carboxylic acid
ZN
ZINC ION
HOH
water
LIG
1
2
9EA
9EA
401
A
ZN
1
3
ZN
ZN
402
A
ZN
2
3
ZN
ZN
403
A
ZN
3
3
ZN
ZN
404
A
ZN
4
3
ZN
ZN
405
A
ZN
5
3
ZN
ZN
406
A
ZN
6
3
ZN
ZN
407
A
ZN
2
3
ZN
ZN
408
A
LIG
1
2
9EA
9EA
401
B
ZN
1
3
ZN
ZN
402
B
ZN
3
3
ZN
ZN
403
B
ZN
4
3
ZN
ZN
404
B
HOH
16
4
HOH
HOH
501
A
HOH
108
4
HOH
HOH
502
A
HOH
9
4
HOH
HOH
503
A
HOH
103
4
HOH
HOH
504
A
HOH
109
4
HOH
HOH
505
A
HOH
48
4
HOH
HOH
506
A
HOH
63
4
HOH
HOH
507
A
HOH
35
4
HOH
HOH
508
A
HOH
49
4
HOH
HOH
509
A
HOH
7
4
HOH
HOH
510
A
HOH
94
4
HOH
HOH
511
A
HOH
46
4
HOH
HOH
512
A
HOH
124
4
HOH
HOH
513
A
HOH
6
4
HOH
HOH
514
A
HOH
67
4
HOH
HOH
515
A
HOH
99
4
HOH
HOH
516
A
HOH
97
4
HOH
HOH
517
A
HOH
29
4
HOH
HOH
518
A
HOH
84
4
HOH
HOH
519
A
HOH
69
4
HOH
HOH
520
A
HOH
11
4
HOH
HOH
521
A
HOH
12
4
HOH
HOH
522
A
HOH
28
4
HOH
HOH
523
A
HOH
26
4
HOH
HOH
524
A
HOH
100
4
HOH
HOH
525
A
HOH
120
4
HOH
HOH
526
A
HOH
45
4
HOH
HOH
527
A
HOH
34
4
HOH
HOH
528
A
HOH
47
4
HOH
HOH
529
A
HOH
107
4
HOH
HOH
530
A
HOH
18
4
HOH
HOH
531
A
HOH
115
4
HOH
HOH
532
A
HOH
43
4
HOH
HOH
533
A
HOH
81
4
HOH
HOH
534
A
HOH
30
4
HOH
HOH
535
A
HOH
70
4
HOH
HOH
536
A
HOH
118
4
HOH
HOH
537
A
HOH
72
4
HOH
HOH
538
A
HOH
90
4
HOH
HOH
539
A
HOH
54
4
HOH
HOH
540
A
HOH
36
4
HOH
HOH
541
A
HOH
112
4
HOH
HOH
542
A
HOH
4
4
HOH
HOH
543
A
HOH
117
4
HOH
HOH
544
A
HOH
121
4
HOH
HOH
545
A
HOH
87
4
HOH
HOH
546
A
HOH
39
4
HOH
HOH
547
A
HOH
24
4
HOH
HOH
548
A
HOH
41
4
HOH
HOH
549
A
HOH
50
4
HOH
HOH
550
A
HOH
95
4
HOH
HOH
551
A
HOH
21
4
HOH
HOH
552
A
HOH
40
4
HOH
HOH
553
A
HOH
33
4
HOH
HOH
554
A
HOH
92
4
HOH
HOH
555
A
HOH
88
4
HOH
HOH
556
A
HOH
101
4
HOH
HOH
501
B
HOH
57
4
HOH
HOH
502
B
HOH
102
4
HOH
HOH
503
B
HOH
110
4
HOH
HOH
504
B
HOH
60
4
HOH
HOH
505
B
HOH
1
4
HOH
HOH
506
B
HOH
10
4
HOH
HOH
507
B
HOH
13
4
HOH
HOH
508
B
HOH
104
4
HOH
HOH
509
B
HOH
83
4
HOH
HOH
510
B
HOH
119
4
HOH
HOH
511
B
HOH
8
4
HOH
HOH
512
B
HOH
19
4
HOH
HOH
513
B
HOH
122
4
HOH
HOH
514
B
HOH
3
4
HOH
HOH
515
B
HOH
123
4
HOH
HOH
516
B
HOH
82
4
HOH
HOH
517
B
HOH
59
4
HOH
HOH
518
B
HOH
22
4
HOH
HOH
519
B
HOH
32
4
HOH
HOH
520
B
HOH
73
4
HOH
HOH
521
B
HOH
96
4
HOH
HOH
522
B
HOH
25
4
HOH
HOH
523
B
HOH
91
4
HOH
HOH
524
B
HOH
85
4
HOH
HOH
525
B
HOH
66
4
HOH
HOH
526
B
HOH
105
4
HOH
HOH
527
B
HOH
17
4
HOH
HOH
528
B
HOH
61
4
HOH
HOH
529
B
HOH
75
4
HOH
HOH
530
B
HOH
114
4
HOH
HOH
531
B
HOH
62
4
HOH
HOH
532
B
HOH
64
4
HOH
HOH
533
B
HOH
74
4
HOH
HOH
534
B
HOH
65
4
HOH
HOH
535
B
HOH
76
4
HOH
HOH
536
B
HOH
52
4
HOH
HOH
537
B
HOH
56
4
HOH
HOH
538
B
HOH
44
4
HOH
HOH
539
B
HOH
38
4
HOH
HOH
540
B
HOH
55
4
HOH
HOH
541
B
HOH
53
4
HOH
HOH
542
B
HOH
58
4
HOH
HOH
543
B
HOH
86
4
HOH
HOH
544
B
HOH
77
4
HOH
HOH
545
B
HOH
15
4
HOH
HOH
546
B
HOH
14
4
HOH
HOH
547
B
HOH
42
4
HOH
HOH
548
B
HOH
2
4
HOH
HOH
549
B
HOH
51
4
HOH
HOH
550
B
HOH
116
4
HOH
HOH
551
B
HOH
68
4
HOH
HOH
552
B
HOH
89
4
HOH
HOH
553
B
HOH
80
4
HOH
HOH
554
B
HOH
78
4
HOH
HOH
555
B
HOH
5
4
HOH
HOH
556
B
HOH
37
4
HOH
HOH
557
B
HOH
93
4
HOH
HOH
558
B
HOH
23
4
HOH
HOH
559
B
HOH
27
4
HOH
HOH
560
B
HOH
31
4
HOH
HOH
561
B
HOH
79
4
HOH
HOH
562
B
HOH
98
4
HOH
HOH
563
B
HOH
71
4
HOH
HOH
564
B
HOH
111
4
HOH
HOH
565
B
HOH
106
4
HOH
HOH
566
B
HOH
20
4
HOH
HOH
567
B
HOH
113
4
HOH
HOH
568
B
n
1
170
A
n
2
171
A
MET
172
n
3
MET
172
A
ASP
173
n
4
ASP
173
A
LEU
174
n
5
LEU
174
A
TYR
175
n
6
TYR
175
A
ARG
176
n
7
ARG
176
A
GLN
177
n
8
GLN
177
A
SER
178
n
9
SER
178
A
LEU
179
n
10
LEU
179
A
GLU
180
n
11
GLU
180
A
ILE
181
n
12
ILE
181
A
ILE
182
n
13
ILE
182
A
SER
183
n
14
SER
183
A
ARG
184
n
15
ARG
184
A
TYR
185
n
16
TYR
185
A
LEU
186
n
17
LEU
186
A
ARG
187
n
18
ARG
187
A
GLU
188
n
19
GLU
188
A
GLN
189
n
20
GLN
189
A
ALA
190
n
21
ALA
190
A
THR
191
n
22
THR
191
A
GLY
192
n
23
GLY
192
A
ALA
193
n
24
ALA
193
A
LYS
194
n
25
LYS
194
A
n
26
195
A
n
27
196
A
n
28
197
A
n
29
198
A
n
30
199
A
n
31
200
A
n
32
201
A
SER
202
n
33
SER
202
A
GLY
203
n
34
GLY
203
A
ALA
204
n
35
ALA
204
A
THR
205
n
36
THR
205
A
SER
206
n
37
SER
206
A
ARG
207
n
38
ARG
207
A
LYS
208
n
39
LYS
208
A
ALA
209
n
40
ALA
209
A
LEU
210
n
41
LEU
210
A
GLU
211
n
42
GLU
211
A
THR
212
n
43
THR
212
A
LEU
213
n
44
LEU
213
A
ARG
214
n
45
ARG
214
A
ARG
215
n
46
ARG
215
A
VAL
216
n
47
VAL
216
A
GLY
217
n
48
GLY
217
A
ASP
218
n
49
ASP
218
A
GLY
219
n
50
GLY
219
A
VAL
220
n
51
VAL
220
A
GLN
221
n
52
GLN
221
A
ARG
222
n
53
ARG
222
A
ASN
223
n
54
ASN
223
A
HIS
224
n
55
HIS
224
A
GLU
225
n
56
GLU
225
A
THR
226
n
57
THR
226
A
ALA
227
n
58
ALA
227
A
PHE
228
n
59
PHE
228
A
GLN
229
n
60
GLN
229
A
GLY
230
n
61
GLY
230
A
MET
231
n
62
MET
231
A
LEU
232
n
63
LEU
232
A
ARG
233
n
64
ARG
233
A
LYS
234
n
65
LYS
234
A
LEU
235
n
66
LEU
235
A
ASP
236
n
67
ASP
236
A
ILE
237
n
68
ILE
237
A
LYS
238
n
69
LYS
238
A
ASN
239
n
70
ASN
239
A
GLU
240
n
71
GLU
240
A
ASP
241
n
72
ASP
241
A
ASP
242
n
73
ASP
242
A
VAL
243
n
74
VAL
243
A
LYS
244
n
75
LYS
244
A
SER
245
n
76
SER
245
A
LEU
246
n
77
LEU
246
A
SER
247
n
78
SER
247
A
ARG
248
n
79
ARG
248
A
VAL
249
n
80
VAL
249
A
MET
250
n
81
MET
250
A
ILE
251
n
82
ILE
251
A
HIS
252
n
83
HIS
252
A
VAL
253
n
84
VAL
253
A
PHE
254
n
85
PHE
254
A
SER
255
n
86
SER
255
A
ASP
256
n
87
ASP
256
A
GLY
257
n
88
GLY
257
A
VAL
258
n
89
VAL
258
A
THR
259
n
90
THR
259
A
ASN
260
n
91
ASN
260
A
TRP
261
n
92
TRP
261
A
GLY
262
n
93
GLY
262
A
ARG
263
n
94
ARG
263
A
ILE
264
n
95
ILE
264
A
VAL
265
n
96
VAL
265
A
THR
266
n
97
THR
266
A
LEU
267
n
98
LEU
267
A
ILE
268
n
99
ILE
268
A
SER
269
n
100
SER
269
A
PHE
270
n
101
PHE
270
A
GLY
271
n
102
GLY
271
A
ALA
272
n
103
ALA
272
A
PHE
273
n
104
PHE
273
A
VAL
274
n
105
VAL
274
A
ALA
275
n
106
ALA
275
A
LYS
276
n
107
LYS
276
A
HIS
277
n
108
HIS
277
A
LEU
278
n
109
LEU
278
A
LYS
279
n
110
LYS
279
A
THR
280
n
111
THR
280
A
ILE
281
n
112
ILE
281
A
ASN
282
n
113
ASN
282
A
GLN
283
n
114
GLN
283
A
GLU
284
n
115
GLU
284
A
SER
285
n
116
SER
285
A
CYS
286
n
117
CYS
286
A
ILE
287
n
118
ILE
287
A
GLU
288
n
119
GLU
288
A
PRO
289
n
120
PRO
289
A
LEU
290
n
121
LEU
290
A
ALA
291
n
122
ALA
291
A
GLU
292
n
123
GLU
292
A
SER
293
n
124
SER
293
A
ILE
294
n
125
ILE
294
A
THR
295
n
126
THR
295
A
ASP
296
n
127
ASP
296
A
VAL
297
n
128
VAL
297
A
LEU
298
n
129
LEU
298
A
VAL
299
n
130
VAL
299
A
ARG
300
n
131
ARG
300
A
THR
301
n
132
THR
301
A
LYS
302
n
133
LYS
302
A
ARG
303
n
134
ARG
303
A
ASP
304
n
135
ASP
304
A
TRP
305
n
136
TRP
305
A
LEU
306
n
137
LEU
306
A
VAL
307
n
138
VAL
307
A
LYS
308
n
139
LYS
308
A
GLN
309
n
140
GLN
309
A
ARG
310
n
141
ARG
310
A
GLY
311
n
142
GLY
311
A
TRP
312
n
143
TRP
312
A
ASP
313
n
144
ASP
313
A
GLY
314
n
145
GLY
314
A
PHE
315
n
146
PHE
315
A
VAL
316
n
147
VAL
316
A
GLU
317
n
148
GLU
317
A
PHE
318
n
149
PHE
318
A
PHE
319
n
150
PHE
319
A
HIS
320
n
151
HIS
320
A
VAL
321
n
152
VAL
321
A
GLU
322
n
153
GLU
322
A
n
154
323
A
n
155
324
A
n
156
325
A
n
157
326
A
n
1
170
B
n
2
171
B
MET
172
n
3
MET
172
B
ASP
173
n
4
ASP
173
B
LEU
174
n
5
LEU
174
B
TYR
175
n
6
TYR
175
B
ARG
176
n
7
ARG
176
B
GLN
177
n
8
GLN
177
B
SER
178
n
9
SER
178
B
LEU
179
n
10
LEU
179
B
GLU
180
n
11
GLU
180
B
ILE
181
n
12
ILE
181
B
ILE
182
n
13
ILE
182
B
SER
183
n
14
SER
183
B
ARG
184
n
15
ARG
184
B
TYR
185
n
16
TYR
185
B
LEU
186
n
17
LEU
186
B
ARG
187
n
18
ARG
187
B
GLU
188
n
19
GLU
188
B
GLN
189
n
20
GLN
189
B
ALA
190
n
21
ALA
190
B
THR
191
n
22
THR
191
B
GLY
192
n
23
GLY
192
B
ALA
193
n
24
ALA
193
B
LYS
194
n
25
LYS
194
B
n
26
195
B
n
27
196
B
n
28
197
B
n
29
198
B
n
30
199
B
n
31
200
B
n
32
201
B
SER
202
n
33
SER
202
B
GLY
203
n
34
GLY
203
B
ALA
204
n
35
ALA
204
B
THR
205
n
36
THR
205
B
SER
206
n
37
SER
206
B
ARG
207
n
38
ARG
207
B
LYS
208
n
39
LYS
208
B
ALA
209
n
40
ALA
209
B
LEU
210
n
41
LEU
210
B
GLU
211
n
42
GLU
211
B
THR
212
n
43
THR
212
B
LEU
213
n
44
LEU
213
B
ARG
214
n
45
ARG
214
B
ARG
215
n
46
ARG
215
B
VAL
216
n
47
VAL
216
B
GLY
217
n
48
GLY
217
B
ASP
218
n
49
ASP
218
B
GLY
219
n
50
GLY
219
B
VAL
220
n
51
VAL
220
B
GLN
221
n
52
GLN
221
B
ARG
222
n
53
ARG
222
B
ASN
223
n
54
ASN
223
B
HIS
224
n
55
HIS
224
B
GLU
225
n
56
GLU
225
B
THR
226
n
57
THR
226
B
ALA
227
n
58
ALA
227
B
PHE
228
n
59
PHE
228
B
GLN
229
n
60
GLN
229
B
GLY
230
n
61
GLY
230
B
MET
231
n
62
MET
231
B
LEU
232
n
63
LEU
232
B
ARG
233
n
64
ARG
233
B
LYS
234
n
65
LYS
234
B
LEU
235
n
66
LEU
235
B
ASP
236
n
67
ASP
236
B
ILE
237
n
68
ILE
237
B
LYS
238
n
69
LYS
238
B
ASN
239
n
70
ASN
239
B
GLU
240
n
71
GLU
240
B
ASP
241
n
72
ASP
241
B
ASP
242
n
73
ASP
242
B
VAL
243
n
74
VAL
243
B
LYS
244
n
75
LYS
244
B
SER
245
n
76
SER
245
B
LEU
246
n
77
LEU
246
B
SER
247
n
78
SER
247
B
ARG
248
n
79
ARG
248
B
VAL
249
n
80
VAL
249
B
MET
250
n
81
MET
250
B
ILE
251
n
82
ILE
251
B
HIS
252
n
83
HIS
252
B
VAL
253
n
84
VAL
253
B
PHE
254
n
85
PHE
254
B
SER
255
n
86
SER
255
B
ASP
256
n
87
ASP
256
B
GLY
257
n
88
GLY
257
B
VAL
258
n
89
VAL
258
B
THR
259
n
90
THR
259
B
ASN
260
n
91
ASN
260
B
TRP
261
n
92
TRP
261
B
GLY
262
n
93
GLY
262
B
ARG
263
n
94
ARG
263
B
ILE
264
n
95
ILE
264
B
VAL
265
n
96
VAL
265
B
THR
266
n
97
THR
266
B
LEU
267
n
98
LEU
267
B
ILE
268
n
99
ILE
268
B
SER
269
n
100
SER
269
B
PHE
270
n
101
PHE
270
B
GLY
271
n
102
GLY
271
B
ALA
272
n
103
ALA
272
B
PHE
273
n
104
PHE
273
B
VAL
274
n
105
VAL
274
B
ALA
275
n
106
ALA
275
B
LYS
276
n
107
LYS
276
B
HIS
277
n
108
HIS
277
B
LEU
278
n
109
LEU
278
B
LYS
279
n
110
LYS
279
B
THR
280
n
111
THR
280
B
ILE
281
n
112
ILE
281
B
ASN
282
n
113
ASN
282
B
GLN
283
n
114
GLN
283
B
GLU
284
n
115
GLU
284
B
SER
285
n
116
SER
285
B
CYS
286
n
117
CYS
286
B
ILE
287
n
118
ILE
287
B
GLU
288
n
119
GLU
288
B
PRO
289
n
120
PRO
289
B
LEU
290
n
121
LEU
290
B
ALA
291
n
122
ALA
291
B
GLU
292
n
123
GLU
292
B
SER
293
n
124
SER
293
B
ILE
294
n
125
ILE
294
B
THR
295
n
126
THR
295
B
ASP
296
n
127
ASP
296
B
VAL
297
n
128
VAL
297
B
LEU
298
n
129
LEU
298
B
VAL
299
n
130
VAL
299
B
ARG
300
n
131
ARG
300
B
THR
301
n
132
THR
301
B
LYS
302
n
133
LYS
302
B
ARG
303
n
134
ARG
303
B
ASP
304
n
135
ASP
304
B
TRP
305
n
136
TRP
305
B
LEU
306
n
137
LEU
306
B
VAL
307
n
138
VAL
307
B
LYS
308
n
139
LYS
308
B
GLN
309
n
140
GLN
309
B
ARG
310
n
141
ARG
310
B
GLY
311
n
142
GLY
311
B
TRP
312
n
143
TRP
312
B
ASP
313
n
144
ASP
313
B
GLY
314
n
145
GLY
314
B
PHE
315
n
146
PHE
315
B
VAL
316
n
147
VAL
316
B
GLU
317
n
148
GLU
317
B
PHE
318
n
149
PHE
318
B
PHE
319
n
150
PHE
319
B
HIS
320
n
151
HIS
320
B
VAL
321
n
152
VAL
321
B
GLU
322
n
153
GLU
322
B
n
154
323
B
n
155
324
B
n
156
325
B
n
157
326
B
author_and_software_defined_assembly
PISA
2
dimeric
none
1440
-229
16330
A
HIS
224
A
NE2
HIS
55
1_555
A
ZN
402
D
ZN
ZN
1_555
A
GLU
288
A
OE1
GLU
119
1_555
65.7
A
HIS
224
A
NE2
HIS
55
1_555
A
ZN
402
D
ZN
ZN
1_555
A
GLU
288
A
OE2
GLU
119
1_555
66.9
A
GLU
288
A
OE1
GLU
119
1_555
A
ZN
402
D
ZN
ZN
1_555
A
GLU
288
A
OE2
GLU
119
1_555
4.2
A
HIS
224
A
NE2
HIS
55
1_555
A
ZN
402
D
ZN
ZN
1_555
A
HOH
506
O
O
HOH
3_455
99.1
A
GLU
288
A
OE1
GLU
119
1_555
A
ZN
402
D
ZN
ZN
1_555
A
HOH
506
O
O
HOH
3_455
105.9
A
GLU
288
A
OE2
GLU
119
1_555
A
ZN
402
D
ZN
ZN
1_555
A
HOH
506
O
O
HOH
3_455
101.7
A
HIS
224
A
NE2
HIS
55
1_555
A
ZN
402
D
ZN
ZN
1_555
A
HOH
529
O
O
HOH
3_455
109.7
A
GLU
288
A
OE1
GLU
119
1_555
A
ZN
402
D
ZN
ZN
1_555
A
HOH
529
O
O
HOH
3_455
50.5
A
GLU
288
A
OE2
GLU
119
1_555
A
ZN
402
D
ZN
ZN
1_555
A
HOH
529
O
O
HOH
3_455
51.9
A
HOH
506
O
O
HOH
3_455
A
ZN
402
D
ZN
ZN
1_555
A
HOH
529
O
O
HOH
3_455
122.1
A
ASP
241
A
OD2
ASP
72
1_555
A
ZN
407
I
ZN
ZN
1_555
B
ASP
242
B
OD1
ASP
73
1_555
39.9
A
ASP
242
A
OD1
ASP
73
1_555
A
ZN
406
H
ZN
ZN
1_555
B
ASP
241
B
OD2
ASP
72
1_555
65.0
A
HIS
252
A
NE2
HIS
83
1_555
A
ZN
404
F
ZN
ZN
1_555
A
ASP
256
A
OD2
ASP
87
1_555
117.0
A
HIS
252
A
NE2
HIS
83
1_555
A
ZN
404
F
ZN
ZN
1_555
A
HOH
537
O
O
HOH
1_555
110.7
A
ASP
256
A
OD2
ASP
87
1_555
A
ZN
404
F
ZN
ZN
1_555
A
HOH
537
O
O
HOH
1_555
105.3
A
HIS
252
A
ND1
HIS
83
1_555
A
ZN
405
G
ZN
ZN
1_555
A
HOH
515
O
O
HOH
1_555
102.3
A
HIS
252
A
ND1
HIS
83
1_555
A
ZN
405
G
ZN
ZN
1_555
B
GLU
292
B
OE2
GLU
123
1_555
27.3
A
HOH
515
O
O
HOH
1_555
A
ZN
405
G
ZN
ZN
1_555
B
GLU
292
B
OE2
GLU
123
1_555
82.7
A
HIS
252
A
ND1
HIS
83
1_555
A
ZN
405
G
ZN
ZN
1_555
B
ASP
296
B
OD2
ASP
127
1_555
29.3
A
HOH
515
O
O
HOH
1_555
A
ZN
405
G
ZN
ZN
1_555
B
ASP
296
B
OD2
ASP
127
1_555
81.2
B
GLU
292
B
OE2
GLU
123
1_555
A
ZN
405
G
ZN
ZN
1_555
B
ASP
296
B
OD2
ASP
127
1_555
2.0
A
GLU
292
A
OE2
GLU
123
1_555
B
ZN
403
M
ZN
ZN
2_564
A
ASP
296
A
OD2
ASP
127
1_555
102.6
A
GLU
292
A
OE2
GLU
123
1_555
B
ZN
403
M
ZN
ZN
2_564
B
HIS
252
B
ND1
HIS
83
1_555
58.4
A
ASP
296
A
OD2
ASP
127
1_555
B
ZN
403
M
ZN
ZN
2_564
B
HIS
252
B
ND1
HIS
83
1_555
44.9
A
GLU
292
A
OE2
GLU
123
1_555
B
ZN
403
M
ZN
ZN
2_564
B
HOH
532
P
O
HOH
1_555
62.4
A
ASP
296
A
OD2
ASP
127
1_555
B
ZN
403
M
ZN
ZN
2_564
B
HOH
532
P
O
HOH
1_555
40.5
B
HIS
252
B
ND1
HIS
83
1_555
B
ZN
403
M
ZN
ZN
2_564
B
HOH
532
P
O
HOH
1_555
5.0
A
HIS
320
A
NE2
HIS
151
1_555
A
ZN
408
J
ZN
ZN
1_555
A
HOH
540
O
O
HOH
1_555
102.3
A
HIS
320
A
NE2
HIS
151
1_555
A
ZN
408
J
ZN
ZN
1_555
B
9EA
401
K
N47
9EA
1_555
103.5
A
HOH
540
O
O
HOH
1_555
A
ZN
408
J
ZN
ZN
1_555
B
9EA
401
K
N47
9EA
1_555
106.0
A
HIS
320
A
NE2
HIS
151
1_555
A
ZN
408
J
ZN
ZN
1_555
B
HOH
541
P
O
HOH
1_555
106.4
A
HOH
540
O
O
HOH
1_555
A
ZN
408
J
ZN
ZN
1_555
B
HOH
541
P
O
HOH
1_555
136.9
B
9EA
401
K
N47
9EA
1_555
A
ZN
408
J
ZN
ZN
1_555
B
HOH
541
P
O
HOH
1_555
97.8
A
9EA
401
C
N47
9EA
1_555
A
ZN
403
E
ZN
ZN
1_555
B
HIS
320
B
NE2
HIS
151
1_555
76.7
A
9EA
401
C
N47
9EA
1_555
A
ZN
403
E
ZN
ZN
1_555
B
HOH
537
P
O
HOH
1_545
99.9
B
HIS
320
B
NE2
HIS
151
1_555
A
ZN
403
E
ZN
ZN
1_555
B
HOH
537
P
O
HOH
1_545
112.6
A
9EA
401
C
N47
9EA
1_555
A
ZN
403
E
ZN
ZN
1_555
B
HOH
550
P
O
HOH
1_545
107.4
B
HIS
320
B
NE2
HIS
151
1_555
A
ZN
403
E
ZN
ZN
1_555
B
HOH
550
P
O
HOH
1_545
48.2
B
HOH
537
P
O
HOH
1_545
A
ZN
403
E
ZN
ZN
1_555
B
HOH
550
P
O
HOH
1_545
138.7
B
HIS
224
B
NE2
HIS
55
1_555
B
ZN
402
L
ZN
ZN
1_555
B
GLU
288
B
OE1
GLU
119
1_555
67.1
B
HIS
224
B
NE2
HIS
55
1_555
B
ZN
402
L
ZN
ZN
1_555
B
GLU
288
B
OE2
GLU
119
1_555
68.1
B
GLU
288
B
OE1
GLU
119
1_555
B
ZN
402
L
ZN
ZN
1_555
B
GLU
288
B
OE2
GLU
119
1_555
4.2
B
HIS
224
B
NE2
HIS
55
1_555
B
ZN
402
L
ZN
ZN
1_555
B
HOH
518
P
O
HOH
1_555
99.3
B
GLU
288
B
OE1
GLU
119
1_555
B
ZN
402
L
ZN
ZN
1_555
B
HOH
518
P
O
HOH
1_555
106.8
B
GLU
288
B
OE2
GLU
119
1_555
B
ZN
402
L
ZN
ZN
1_555
B
HOH
518
P
O
HOH
1_555
102.7
B
HIS
224
B
NE2
HIS
55
1_555
B
ZN
402
L
ZN
ZN
1_555
B
HOH
543
P
O
HOH
2_574
109.8
B
GLU
288
B
OE1
GLU
119
1_555
B
ZN
402
L
ZN
ZN
1_555
B
HOH
543
P
O
HOH
2_574
49.7
B
GLU
288
B
OE2
GLU
119
1_555
B
ZN
402
L
ZN
ZN
1_555
B
HOH
543
P
O
HOH
2_574
51.2
B
HOH
518
P
O
HOH
1_555
B
ZN
402
L
ZN
ZN
1_555
B
HOH
543
P
O
HOH
2_574
123.3
B
HIS
252
B
NE2
HIS
83
1_555
B
ZN
404
N
ZN
ZN
1_555
B
ASP
256
B
OD2
ASP
87
1_555
119.4
B
HIS
252
B
NE2
HIS
83
1_555
B
ZN
404
N
ZN
ZN
1_555
B
HOH
533
P
O
HOH
1_555
112.2
B
ASP
256
B
OD2
ASP
87
1_555
B
ZN
404
N
ZN
ZN
1_555
B
HOH
533
P
O
HOH
1_555
97.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
GLY
170
A
GLY
1
1
Y
1
A
SER
171
A
SER
2
1
Y
1
A
ASP
195
A
ASP
26
1
Y
1
A
THR
196
A
THR
27
1
Y
1
A
LYS
197
A
LYS
28
1
Y
1
A
PRO
198
A
PRO
29
1
Y
1
A
MET
199
A
MET
30
1
Y
1
A
GLY
200
A
GLY
31
1
Y
1
A
ARG
201
A
ARG
32
1
Y
1
A
ASP
323
A
ASP
154
1
Y
1
A
LEU
324
A
LEU
155
1
Y
1
A
GLU
325
A
GLU
156
1
Y
1
A
GLY
326
A
GLY
157
1
Y
1
B
GLY
170
B
GLY
1
1
Y
1
B
SER
171
B
SER
2
1
Y
1
B
ASP
195
B
ASP
26
1
Y
1
B
THR
196
B
THR
27
1
Y
1
B
LYS
197
B
LYS
28
1
Y
1
B
PRO
198
B
PRO
29
1
Y
1
B
MET
199
B
MET
30
1
Y
1
B
GLY
200
B
GLY
31
1
Y
1
B
ARG
201
B
ARG
32
1
Y
1
B
ASP
323
B
ASP
154
1
Y
1
B
LEU
324
B
LEU
155
1
Y
1
B
GLU
325
B
GLU
156
1
Y
1
B
GLY
326
B
GLY
157
1
Y
1
A
ASP
173
62.37
-75.85
1
A
ASP
236
40.10
79.07
1
B
ASP
173
59.66
-75.66
1
B
ASP
236
40.14
78.93
148.890
49.9500
25.450
-3.5755
0.0000
0.0000
-3.5755
0.0000
7.1509
0.9350
0.9280
0.2220
0.0000
0.2010
0.2020
2.3100
22.8100
933
18180
5.1300
99.4000
0.2670
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.2550
0.1880
0.1930
0.300
2.3100
22.8100
124
2572
41.09
55.52
124
0
2324
288
898
SINUSOIDAL
2.000
58
HARMONIC
2.000
418
HARMONIC
5.000
2526
HARMONIC
20.000
5
SEMIHARMONIC
5.000
304
SEMIHARMONIC
5.000
2908
SEMIHARMONIC
4.000
0.010
2526
HARMONIC
2.000
1.080
3426
HARMONIC
2.000
2.340
20.450
0.2370
0.0000
0.2150
0.2160
2.4500
141
2750
2891
9
4.8800
97.3400
46.530
2.300
500.000
5VKC
18293
0.118
1.368
1
11.300
89320
4.900
99.500
0.462
2.300
2.380
1.602
1
2.300
97.100
0.423
2.380
2.480
1.260
1
3.100
98.700
0.388
2.480
2.590
1.449
1
4.000
99.600
0.341
2.590
2.730
1.213
1
4.800
100.000
0.258
2.730
2.900
1.416
1
5.400
100.000
0.204
2.900
3.120
1.382
1
5.700
100.000
0.142
3.120
3.440
1.334
1
5.800
100.000
0.112
3.440
3.930
1.369
1
5.900
100.000
0.096
3.930
4.960
1.337
1
5.900
100.000
0.080
4.960
500.000
1.431
1
5.800
99.600
data scaling
SCALEPACK
refinement
BUSTER
2.11.7
data extraction
PDB_EXTRACT
3.22
data reduction
DENZO
phasing
MOLREP
N
Crystal structure of MCL-1 in complex with a BIM competitive inhibitor
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
3
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
A
ASP
173
A
ASP
4
HELX_P
A
GLY
192
A
GLY
23
1
AA1
20
A
GLY
203
A
GLY
34
HELX_P
A
HIS
224
A
HIS
55
1
AA2
22
A
HIS
224
A
HIS
55
HELX_P
A
ASP
236
A
ASP
67
1
AA3
13
A
ASN
239
A
ASN
70
HELX_P
A
SER
245
A
SER
76
1
AA4
7
A
SER
245
A
SER
76
HELX_P
A
ASP
256
A
ASP
87
1
AA5
12
A
ASN
260
A
ASN
91
HELX_P
A
ILE
281
A
ILE
112
1
AA6
22
A
GLN
283
A
GLN
114
HELX_P
A
SER
285
A
SER
116
5
AA7
3
A
CYS
286
A
CYS
117
HELX_P
A
GLN
309
A
GLN
140
1
AA8
24
A
ARG
310
A
ARG
141
HELX_P
A
PHE
319
A
PHE
150
1
AA9
10
B
ASP
173
B
ASP
4
HELX_P
B
GLY
192
B
GLY
23
1
AB1
20
B
GLY
203
B
GLY
34
HELX_P
B
HIS
224
B
HIS
55
1
AB2
22
B
HIS
224
B
HIS
55
HELX_P
B
ASP
236
B
ASP
67
1
AB3
13
B
ASN
239
B
ASN
70
HELX_P
B
SER
245
B
SER
76
1
AB4
7
B
SER
245
B
SER
76
HELX_P
B
ASP
256
B
ASP
87
1
AB5
12
B
ASN
260
B
ASN
91
HELX_P
B
ILE
281
B
ILE
112
1
AB6
22
B
GLN
283
B
GLN
114
HELX_P
B
SER
285
B
SER
116
5
AB7
3
B
CYS
286
B
CYS
117
HELX_P
B
GLN
309
B
GLN
140
1
AB8
24
B
ARG
310
B
ARG
141
HELX_P
B
PHE
319
B
PHE
150
1
AB9
10
metalc
2.106
A
HIS
224
A
NE2
HIS
55
1_555
A
ZN
402
D
ZN
ZN
1_555
metalc
2.479
A
ASP
241
A
OD2
ASP
72
1_555
A
ZN
407
I
ZN
ZN
1_555
metalc
2.219
A
ASP
242
A
OD1
ASP
73
1_555
A
ZN
406
H
ZN
ZN
1_555
metalc
2.112
A
HIS
252
A
NE2
HIS
83
1_555
A
ZN
404
F
ZN
ZN
1_555
metalc
1.917
A
HIS
252
A
ND1
HIS
83
1_555
A
ZN
405
G
ZN
ZN
1_555
metalc
2.075
A
ASP
256
A
OD2
ASP
87
1_555
A
ZN
404
F
ZN
ZN
1_555
metalc
2.444
A
GLU
288
A
OE1
GLU
119
1_555
A
ZN
402
D
ZN
ZN
2_564
metalc
2.036
A
GLU
288
A
OE2
GLU
119
1_555
A
ZN
402
D
ZN
ZN
2_564
metalc
2.085
A
GLU
292
A
OE2
GLU
123
1_555
B
ZN
403
M
ZN
ZN
2_564
metalc
2.020
A
ASP
296
A
OD2
ASP
127
1_555
B
ZN
403
M
ZN
ZN
2_564
metalc
2.066
A
HIS
320
A
NE2
HIS
151
1_555
A
ZN
408
J
ZN
ZN
1_555
metalc
2.155
A
9EA
401
C
N47
9EA
1_555
A
ZN
403
E
ZN
ZN
1_555
metalc
2.052
A
ZN
402
D
ZN
ZN
1_555
A
HOH
506
O
O
HOH
3_455
metalc
2.179
A
ZN
402
D
ZN
ZN
1_555
A
HOH
529
O
O
HOH
3_455
metalc
1.991
A
ZN
403
E
ZN
ZN
1_565
B
HIS
320
B
NE2
HIS
151
1_555
metalc
1.889
A
ZN
403
E
ZN
ZN
1_555
B
HOH
537
P
O
HOH
1_545
metalc
2.226
A
ZN
403
E
ZN
ZN
1_555
B
HOH
550
P
O
HOH
1_545
metalc
2.074
A
ZN
404
F
ZN
ZN
1_555
A
HOH
537
O
O
HOH
1_555
metalc
2.248
A
ZN
405
G
ZN
ZN
1_555
A
HOH
515
O
O
HOH
1_555
metalc
2.093
A
ZN
405
G
ZN
ZN
3_455
B
GLU
292
B
OE2
GLU
123
1_555
metalc
1.963
A
ZN
405
G
ZN
ZN
3_455
B
ASP
296
B
OD2
ASP
127
1_555
metalc
2.517
A
ZN
406
H
ZN
ZN
3_455
B
ASP
241
B
OD2
ASP
72
1_555
metalc
2.150
A
ZN
407
I
ZN
ZN
3_455
B
ASP
242
B
OD1
ASP
73
1_555
metalc
2.264
A
ZN
408
J
ZN
ZN
1_555
A
HOH
540
O
O
HOH
1_555
metalc
2.198
A
ZN
408
J
ZN
ZN
1_555
B
9EA
401
K
N47
9EA
1_555
metalc
1.888
A
ZN
408
J
ZN
ZN
1_555
B
HOH
541
P
O
HOH
1_555
metalc
2.132
B
HIS
224
B
NE2
HIS
55
1_555
B
ZN
402
L
ZN
ZN
1_555
metalc
1.917
B
HIS
252
B
ND1
HIS
83
1_555
B
ZN
403
M
ZN
ZN
1_555
metalc
2.106
B
HIS
252
B
NE2
HIS
83
1_555
B
ZN
404
N
ZN
ZN
1_555
metalc
2.029
B
ASP
256
B
OD2
ASP
87
1_555
B
ZN
404
N
ZN
ZN
1_555
metalc
2.455
B
GLU
288
B
OE1
GLU
119
1_555
B
ZN
402
L
ZN
ZN
3_355
metalc
2.066
B
GLU
288
B
OE2
GLU
119
1_555
B
ZN
402
L
ZN
ZN
3_355
metalc
2.089
B
ZN
402
L
ZN
ZN
1_555
B
HOH
518
P
O
HOH
1_555
metalc
2.171
B
ZN
402
L
ZN
ZN
1_555
B
HOH
543
P
O
HOH
2_574
metalc
2.325
B
ZN
403
M
ZN
ZN
1_555
B
HOH
532
P
O
HOH
1_555
metalc
1.889
B
ZN
404
N
ZN
ZN
1_555
B
HOH
533
P
O
HOH
1_555
signaling protein/inhibitor
MCL-1, signaling protein-inhibitor complex
MCL1_HUMAN
UNP
1
174
Q07820
LYRQSLEIISRYLREQATGAKDTKPMGRSGATSRKALETLRRVGDGVQRNHETAFQGMLRKLDIKNEDDVKSLSRVMIHV
FSDGVTNWGRIVTLISFGAFVAKHLKTINQESCIEPLAESITDVLVRTKRDWLVKQRGWDGFVEFFHVEDLEG
174
326
5VKC
174
326
Q07820
A
1
5
157
174
326
5VKC
174
326
Q07820
B
1
5
157
1
expression tag
GLY
170
5VKC
A
Q07820
UNP
1
1
expression tag
SER
171
5VKC
A
Q07820
UNP
2
1
expression tag
MET
172
5VKC
A
Q07820
UNP
3
1
expression tag
ASP
173
5VKC
A
Q07820
UNP
4
2
expression tag
GLY
170
5VKC
B
Q07820
UNP
1
2
expression tag
SER
171
5VKC
B
Q07820
UNP
2
2
expression tag
MET
172
5VKC
B
Q07820
UNP
3
2
expression tag
ASP
173
5VKC
B
Q07820
UNP
4
binding site for residue 9EA A 401
A
9EA
401
Software
15
binding site for residue ZN A 402
A
ZN
402
Software
4
binding site for residue ZN A 403
A
ZN
403
Software
4
binding site for residue ZN A 404
A
ZN
404
Software
3
binding site for residue ZN A 405
A
ZN
405
Software
5
binding site for residue ZN A 406
A
ZN
406
Software
2
binding site for residue ZN A 407
A
ZN
407
Software
2
binding site for residue ZN A 408
A
ZN
408
Software
4
binding site for residue 9EA B 401
B
9EA
401
Software
16
binding site for residue ZN B 402
B
ZN
402
Software
4
binding site for residue ZN B 403
B
ZN
403
Software
5
binding site for residue ZN B 404
B
ZN
404
Software
4
A
HIS
224
A
HIS
55
15
1_555
A
ALA
227
A
ALA
58
15
1_555
A
MET
250
A
MET
81
15
1_555
A
VAL
253
A
VAL
84
15
1_555
A
GLY
262
A
GLY
93
15
1_555
A
ARG
263
A
ARG
94
15
1_555
A
THR
266
A
THR
97
15
1_555
A
LEU
267
A
LEU
98
15
1_555
A
PHE
270
A
PHE
101
15
1_555
A
PHE
319
A
PHE
150
15
1_555
A
ZN
403
E
ZN
15
1_555
A
HOH
506
O
HOH
15
3_455
A
HOH
509
O
HOH
15
1_555
A
HOH
512
O
HOH
15
1_555
B
HIS
320
B
HIS
151
15
1_545
A
HIS
224
A
HIS
55
4
1_555
A
GLU
288
A
GLU
119
4
3_455
A
HOH
506
O
HOH
4
3_455
A
HOH
529
O
HOH
4
3_455
A
9EA
401
C
9EA
4
1_555
B
HIS
320
B
HIS
151
4
1_545
B
HOH
537
P
HOH
4
1_545
B
HOH
550
P
HOH
4
1_545
A
HIS
252
A
HIS
83
3
1_555
A
ASP
256
A
ASP
87
3
1_555
A
HOH
537
O
HOH
3
1_555
A
ARG
248
A
ARG
79
5
1_555
A
HIS
252
A
HIS
83
5
1_555
A
HOH
515
O
HOH
5
1_555
B
GLU
292
B
GLU
123
5
2_564
B
ASP
296
B
ASP
127
5
2_564
A
ASP
242
A
ASP
73
2
1_555
B
ASP
241
B
ASP
72
2
2_564
A
ASP
241
A
ASP
72
2
1_555
B
ASP
242
B
ASP
73
2
2_564
A
HIS
320
A
HIS
151
4
1_555
A
HOH
540
O
HOH
4
1_555
B
9EA
401
K
9EA
4
1_555
B
HOH
541
P
HOH
4
1_555
A
HIS
320
A
HIS
151
16
1_555
A
ZN
408
J
ZN
16
1_555
B
HIS
224
B
HIS
55
16
1_555
B
ALA
227
B
ALA
58
16
1_555
B
MET
250
B
MET
81
16
1_555
B
VAL
253
B
VAL
84
16
1_555
B
GLY
262
B
GLY
93
16
1_555
B
ARG
263
B
ARG
94
16
1_555
B
THR
266
B
THR
97
16
1_555
B
LEU
267
B
LEU
98
16
1_555
B
PHE
270
B
PHE
101
16
1_555
B
PHE
319
B
PHE
150
16
1_555
B
HOH
502
P
HOH
16
1_555
B
HOH
518
P
HOH
16
1_555
B
HOH
538
P
HOH
16
1_555
B
HOH
541
P
HOH
16
1_555
B
HIS
224
B
HIS
55
4
1_555
B
GLU
288
B
GLU
119
4
2_574
B
HOH
518
P
HOH
4
1_555
B
HOH
543
P
HOH
4
2_574
A
GLU
292
A
GLU
123
5
3_455
A
ASP
296
A
ASP
127
5
3_455
B
ARG
248
B
ARG
79
5
1_555
B
HIS
252
B
HIS
83
5
1_555
B
HOH
532
P
HOH
5
1_555
A
GLU
322
A
GLU
153
4
1_555
B
HIS
252
B
HIS
83
4
1_555
B
ASP
256
B
ASP
87
4
1_555
B
HOH
533
P
HOH
4
1_555
145
P 32