0.006197 0.000000 0.000000 0.000000 0.006197 0.000000 0.000000 0.000000 0.006197 0.00000 0.00000 0.00000 Wilson, I.A. Kadam, R.U. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 24 90.00 90.00 90.00 161.362 161.362 161.362 C2 H4 O 44.053 ACETYL GROUP non-polymer C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 89.093 BETA-ALANINE peptide-like Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C7 H15 N O2 145.199 n N-METHYLLEUCINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C5 H12 N2 O2 132.161 n L-ornithine L-peptide linking C11 H15 N O2 193.242 5-phenyl-L-norvaline L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N O N 3 N C N 4 N H N 5 N H N 6 N H N 7 N H N 8 N N N 9 S C N 10 N C N 11 N O N 12 N C N 13 N O N 14 N H N 15 N H N 16 N H N 17 N H N 18 N H N 19 N H N 20 N H N 21 N N N 22 S C N 23 N C N 24 N O N 25 N C N 26 N C N 27 N C N 28 N N N 29 N C N 30 N N N 31 N N N 32 N O N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N H N 42 N H N 43 N H N 44 N H N 45 N H N 46 N H N 47 N H N 48 N N N 49 S C N 50 N C N 51 N O N 52 N C N 53 N C N 54 N O N 55 N N N 56 N O N 57 N H N 58 N H N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N N N 66 S C N 67 N C N 68 N O N 69 N C N 70 N C N 71 N O N 72 N O N 73 N O N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N N N 82 N C N 83 N C N 84 N C N 85 N O N 86 N O N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N CL N 95 N N N 96 R C N 97 N C N 98 N O N 99 N C N 100 N S N 101 N O N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N N N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N N N 130 S C N 131 N C N 132 N O N 133 N C N 134 N C N 135 N C N 136 N O N 137 N O N 138 N O N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N N N 149 N C N 150 N C N 151 N O N 152 N O N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N N N 159 S C N 160 N C N 161 N O N 162 N C Y 163 N C Y 164 N N Y 165 N C Y 166 N C Y 167 N N N 168 N O N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N O N 180 N H N 181 N H N 182 N N N 183 S C N 184 N C N 185 N O N 186 S C N 187 N C N 188 N C N 189 N C N 190 N O N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N N N 205 S C N 206 N C N 207 N O N 208 N C N 209 N C N 210 N C N 211 N C N 212 N O N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N N N 227 S C N 228 N C N 229 N O N 230 N C N 231 N C N 232 N C N 233 N C N 234 N N N 235 N O N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C N 256 N C N 257 N S N 258 N C N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N N N 272 N C N 273 S C N 274 N C N 275 N C N 276 N C N 277 N C N 278 N C N 279 N O N 280 N O N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 R C N 297 R C N 298 R C N 299 S C N 300 R C N 301 N C N 302 N C N 303 N C N 304 N N N 305 N O N 306 N O N 307 N O N 308 N O N 309 N O N 310 N O N 311 N H N 312 N H N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N C N 330 N C N 331 N N N 332 N C N 333 N O N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N C N 348 N N N 349 N O N 350 S C N 351 N C Y 352 N C N 353 N C N 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N O N 374 N H N 375 N H N 376 N N N 377 S C N 378 N C N 379 N O N 380 N C Y 381 N C Y 382 N C Y 383 N C Y 384 N C Y 385 N C Y 386 N C N 387 N O N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N N N 400 S C N 401 N C N 402 N O N 403 N C N 404 N C N 405 N C N 406 N O N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N N N 417 S C N 418 N C N 419 N O N 420 N C N 421 N O N 422 N O N 423 N H N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N N N 431 S C N 432 N C N 433 N O N 434 R C N 435 N O N 436 N C N 437 N O N 438 N H N 439 N H N 440 N H N 441 N H N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N N N 448 S C N 449 N C N 450 N O N 451 N C Y 452 N C Y 453 N C Y 454 N C Y 455 N N Y 456 N C Y 457 N C Y 458 N C Y 459 N C Y 460 N C N 461 N O N 462 N H N 463 N H N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N N N 475 S C N 476 N C N 477 N O N 478 N C Y 479 N C Y 480 N C Y 481 N C Y 482 N C Y 483 N C Y 484 N C N 485 N O N 486 N O N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N N N 499 S C N 500 N C N 501 N O N 502 N C N 503 N C N 504 N C N 505 N O N 506 N H N 507 N H N 508 N H N 509 N H N 510 N H N 511 N H N 512 N H N 513 N H N 514 N H N 515 N H N 516 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N doub N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N doub N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N doub N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N doub N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N doub N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N sing N 67 N doub N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N doub N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N doub N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N doub N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N doub N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N doub N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N doub N 154 N sing N 155 N sing N 156 N sing N 157 N sing Y 158 N sing Y 159 N doub Y 160 N doub N 161 N sing Y 162 N sing N 163 N sing Y 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N doub N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N doub N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N doub N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N doub N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N doub N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing Y 340 N doub N 341 N sing Y 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing Y 348 N doub N 349 N sing Y 350 N sing Y 351 N doub N 352 N sing N 353 N sing Y 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing Y 369 N doub Y 370 N sing Y 371 N sing N 372 N sing Y 373 N doub N 374 N sing Y 375 N doub N 376 N sing Y 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N doub N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N doub N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N doub N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N doub N 434 N sing N 435 N sing N 436 N sing N 437 N sing Y 438 N doub Y 439 N sing Y 440 N sing N 441 N sing Y 442 N doub Y 443 N sing Y 444 N sing N 445 N sing Y 446 N sing Y 447 N doub N 448 N sing Y 449 N doub N 450 N sing Y 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N sing N 459 N sing N 460 N sing N 461 N doub N 462 N sing N 463 N sing N 464 N sing N 465 N sing Y 466 N doub Y 467 N sing Y 468 N sing N 469 N sing Y 470 N doub N 471 N sing Y 472 N doub N 473 N sing Y 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N doub N 486 N sing N 487 N sing N 488 N sing N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing US Science SCIEAS 0038 1095-9203 358 496 502 10.1126/science.aan0516 28971971 Potent peptidic fusion inhibitors of influenza virus. 2017 10.2210/pdb5w5u/pdb pdb_00005w5u 80 1 PIXEL 2014-11-15 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 1.0332 1.0 23-ID-B APS 1.0332 SYNCHROTRON APS BEAMLINE 23-ID-B 36650.293 Hemagglutinin residues 18-343 1 man polymer 20138.393 Hemagglutinin residues 344-519 1 man polymer 1486.708 ACE-PH8-ORN-MLE-GLU-TYR-PHE-GLU-TRP-LEU-SER-BAL 1 syn polymer 424.401 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 4 man non-polymer 35.453 CHLORIDE ION 2 syn non-polymer 18.015 water 57 nat water cyclic peptide CP141037 (P4) no no DTICIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLKGIAPLQLGKCNIAGWLLGNPECDPLLPVRSWSYIV ETPNSENGICYPGDFIDYEELREQLSSVSSFERFEIFPKESSWPNHNTNGVTAACSHEGKSSFYRNLLWLTEKEGSYPKL KNSYVNKKGKEVLVLWGIHHPPNSKEQQNLYQNENAYVSVVTSNYNRRFTPEIAERPKVRDQAGRMNYYWTLLKPGDTII FEANGNLIAPMYAFALSRGFGSGIITSNASMHECNTKCQTPLGAINSSLPYQNIHPVTIGECPKYVRSAKLRMVTGLRNI PSIQSR DTICIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLKGIAPLQLGKCNIAGWLLGNPECDPLLPVRSWSYIV ETPNSENGICYPGDFIDYEELREQLSSVSSFERFEIFPKESSWPNHNTNGVTAACSHEGKSSFYRNLLWLTEKEGSYPKL KNSYVNKKGKEVLVLWGIHHPPNSKEQQNLYQNENAYVSVVTSNYNRRFTPEIAERPKVRDQAGRMNYYWTLLKPGDTII FEANGNLIAPMYAFALSRGFGSGIITSNASMHECNTKCQTPLGAINSSLPYQNIHPVTIGECPKYVRSAKLRMVTGLRNI PSIQSR A polypeptide(L) no no GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAINGITNKVNTVIEKMNIQFTAVGKEFNKLEKRMENL NKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVKSQLKNNAKEIGNGCFEFYHKCDNECMESVRNGTYDYP KYSEESKLNREKVDGV GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAINGITNKVNTVIEKMNIQFTAVGKEFNKLEKRMENL NKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVKSQLKNNAKEIGNGCFEFYHKCDNECMESVRNGTYDYP KYSEESKLNREKVDGV B polypeptide(L) no yes (ACE)(PH8)(ORN)(MLE)EYFEWLS(BAL) XXALEYFEWLSX D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n A/Puerto Rico/8/1934 H1N1 sample 1 326 HA 211044 Influenza A virus (A/Puerto Rico/8/1934(H1N1)) 7111 Trichoplusia ni Biological sequence A/Puerto Rico/8/1934 H1N1 sample 1 176 HA 211044 Influenza A virus (A/Puerto Rico/8/1934(H1N1)) 7111 Trichoplusia ni Biological sequence 1 3.03 59.36 VAPOR DIFFUSION, SITTING DROP 5 HA conc. 11 mg/ml 1M lithium chloride 10% w/v PEG 6000 0.1M sodium citrate, pH= 5.0 277 citation citation_author citation citation_author pdbx_audit_support atom_site atom_site_anisotrop chem_comp entity pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_struct_special_symmetry pdbx_validate_close_contact struct_asym struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model chem_comp_atom chem_comp_bond repository Initial release Carbohydrate remediation repository Remediation Database references Database references Author supporting evidence Advisory Atomic model Data collection Derived calculations Structure summary Data collection Database references Refinement description Structure summary Data collection 1 0 2017-10-04 1 1 2017-10-25 1 2 2017-11-08 1 3 2019-12-11 2 0 2020-07-29 2 1 2023-10-04 2 2 2023-11-15 _citation.country _citation.journal_abbrev _citation.journal_id_ASTM _citation.journal_id_CSD _citation.journal_id_ISSN _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed _citation.title _citation.year _citation.journal_volume _citation.page_first _citation.page_last _citation_author.name _pdbx_audit_support.funding_organization _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.type_symbol _chem_comp.name _chem_comp.type _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_special_symmetry.label_asym_id _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.auth_seq_id_2 _struct_conn.pdbx_dist_value _struct_conn.pdbx_role _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession _chem_comp_atom.atom_id _chem_comp_bond.atom_id_2 United States National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) R56 AI117675 P NAG 7 n C NAG 1 P NAG 8 n C NAG 2 DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc N RCSB Y RCSB 2017-06-15 REL REL oligosaccharide DGlcpNAcb1-4DGlcpNAcb1- 4 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/1,2,1/[a2122h-1b_1-5_2*NCC/3=O]/1-1/a4-b1 4 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{}}} 4 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 4 O1 HO4 sing n n NAG 2-acetamido-2-deoxy-beta-D-glucopyranose CL CHLORIDE ION HOH water 32630 synthetic construct sample 1RU7 PDB experimental model NAG 1 5 NAG NAG 401 A NAG 2 5 NAG NAG 402 A NAG 4 5 NAG NAG 403 A NAG 6 5 NAG NAG 404 A CL 2 6 CL CL 405 A CL 1 6 CL CL 203 B HOH 38 7 HOH HOH 501 A HOH 13 7 HOH HOH 502 A HOH 7 7 HOH HOH 503 A HOH 12 7 HOH HOH 504 A HOH 4 7 HOH HOH 505 A HOH 3 7 HOH HOH 506 A HOH 17 7 HOH HOH 507 A HOH 19 7 HOH HOH 508 A HOH 8 7 HOH HOH 509 A HOH 22 7 HOH HOH 510 A HOH 42 7 HOH HOH 511 A HOH 58 7 HOH HOH 512 A HOH 25 7 HOH HOH 513 A HOH 40 7 HOH HOH 514 A HOH 5 7 HOH HOH 515 A HOH 50 7 HOH HOH 516 A HOH 43 7 HOH HOH 517 A HOH 36 7 HOH HOH 518 A HOH 46 7 HOH HOH 519 A HOH 61 7 HOH HOH 520 A HOH 21 7 HOH HOH 521 A HOH 26 7 HOH HOH 522 A HOH 52 7 HOH HOH 523 A HOH 64 7 HOH HOH 524 A HOH 55 7 HOH HOH 525 A HOH 49 7 HOH HOH 526 A HOH 45 7 HOH HOH 527 A HOH 16 7 HOH HOH 528 A HOH 65 7 HOH HOH 529 A HOH 33 7 HOH HOH 530 A HOH 15 7 HOH HOH 301 B HOH 10 7 HOH HOH 302 B HOH 34 7 HOH HOH 303 B HOH 60 7 HOH HOH 304 B HOH 20 7 HOH HOH 305 B HOH 41 7 HOH HOH 306 B HOH 57 7 HOH HOH 307 B HOH 39 7 HOH HOH 308 B HOH 6 7 HOH HOH 309 B HOH 14 7 HOH HOH 310 B HOH 48 7 HOH HOH 311 B HOH 54 7 HOH HOH 312 B HOH 35 7 HOH HOH 313 B HOH 1 7 HOH HOH 314 B HOH 51 7 HOH HOH 315 B HOH 63 7 HOH HOH 316 B HOH 59 7 HOH HOH 317 B HOH 23 7 HOH HOH 318 B HOH 32 7 HOH HOH 319 B HOH 29 7 HOH HOH 320 B HOH 62 7 HOH HOH 321 B HOH 37 7 HOH HOH 322 B HOH 9 7 HOH HOH 323 B HOH 47 7 HOH HOH 324 B HOH 44 7 HOH HOH 325 B HOH 28 7 HOH HOH 326 B HOH 24 7 HOH HOH 101 D ASP 11 n 1 ASP 11 A THR 12 n 2 THR 12 A ILE 13 n 3 ILE 13 A CYS 14 n 4 CYS 14 A ILE 15 n 5 ILE 15 A GLY 16 n 6 GLY 16 A TYR 17 n 7 TYR 17 A HIS 18 n 8 HIS 18 A ALA 19 n 9 ALA 19 A ASN 20 n 10 ASN 20 A ASN 21 n 11 ASN 21 A SER 22 n 12 SER 22 A THR 23 n 13 THR 23 A ASP 24 n 14 ASP 24 A THR 25 n 15 THR 25 A VAL 26 n 16 VAL 26 A ASP 27 n 17 ASP 27 A THR 28 n 18 THR 28 A VAL 29 n 19 VAL 29 A LEU 30 n 20 LEU 30 A GLU 31 n 21 GLU 31 A LYS 32 n 22 LYS 32 A ASN 33 n 23 ASN 33 A VAL 34 n 24 VAL 34 A THR 35 n 25 THR 35 A VAL 36 n 26 VAL 36 A THR 37 n 27 THR 37 A HIS 38 n 28 HIS 38 A SER 39 n 29 SER 39 A VAL 40 n 30 VAL 40 A ASN 41 n 31 ASN 41 A LEU 42 n 32 LEU 42 A LEU 43 n 33 LEU 43 A GLU 44 n 34 GLU 44 A ASP 45 n 35 ASP 45 A SER 46 n 36 SER 46 A HIS 47 n 37 HIS 47 A ASN 48 n 38 ASN 48 A GLY 49 n 39 GLY 49 A LYS 50 n 40 LYS 50 A LEU 51 n 41 LEU 51 A CYS 52 n 42 CYS 52 A ARG 53 n 43 ARG 53 A LEU 54 n 44 LEU 54 A LYS 54 n 45 A LYS 54 A GLY 55 n 46 GLY 55 A ILE 56 n 47 ILE 56 A ALA 57 n 48 ALA 57 A PRO 58 n 49 PRO 58 A LEU 59 n 50 LEU 59 A GLN 60 n 51 GLN 60 A LEU 61 n 52 LEU 61 A GLY 62 n 53 GLY 62 A LYS 63 n 54 LYS 63 A CYS 64 n 55 CYS 64 A ASN 65 n 56 ASN 65 A ILE 66 n 57 ILE 66 A ALA 67 n 58 ALA 67 A GLY 68 n 59 GLY 68 A TRP 69 n 60 TRP 69 A LEU 70 n 61 LEU 70 A LEU 71 n 62 LEU 71 A GLY 72 n 63 GLY 72 A ASN 73 n 64 ASN 73 A PRO 74 n 65 PRO 74 A GLU 75 n 66 GLU 75 A CYS 76 n 67 CYS 76 A ASP 77 n 68 ASP 77 A PRO 78 n 69 PRO 78 A LEU 79 n 70 LEU 79 A LEU 80 n 71 LEU 80 A PRO 81 n 72 PRO 81 A VAL 82 n 73 VAL 82 A ARG 83 n 74 ARG 83 A SER 83 n 75 A SER 83 A TRP 84 n 76 TRP 84 A SER 85 n 77 SER 85 A TYR 86 n 78 TYR 86 A ILE 87 n 79 ILE 87 A VAL 88 n 80 VAL 88 A GLU 89 n 81 GLU 89 A THR 90 n 82 THR 90 A PRO 91 n 83 PRO 91 A ASN 92 n 84 ASN 92 A SER 93 n 85 SER 93 A GLU 94 n 86 GLU 94 A ASN 95 n 87 ASN 95 A GLY 95 n 88 A GLY 95 A ILE 96 n 89 ILE 96 A CYS 97 n 90 CYS 97 A TYR 98 n 91 TYR 98 A PRO 99 n 92 PRO 99 A GLY 100 n 93 GLY 100 A ASP 101 n 94 ASP 101 A PHE 102 n 95 PHE 102 A ILE 103 n 96 ILE 103 A ASP 104 n 97 ASP 104 A TYR 105 n 98 TYR 105 A GLU 106 n 99 GLU 106 A GLU 107 n 100 GLU 107 A LEU 108 n 101 LEU 108 A ARG 109 n 102 ARG 109 A GLU 110 n 103 GLU 110 A GLN 111 n 104 GLN 111 A LEU 112 n 105 LEU 112 A SER 113 n 106 SER 113 A SER 114 n 107 SER 114 A VAL 115 n 108 VAL 115 A SER 116 n 109 SER 116 A SER 117 n 110 SER 117 A PHE 118 n 111 PHE 118 A GLU 119 n 112 GLU 119 A ARG 120 n 113 ARG 120 A PHE 121 n 114 PHE 121 A GLU 122 n 115 GLU 122 A ILE 123 n 116 ILE 123 A PHE 124 n 117 PHE 124 A PRO 125 n 118 PRO 125 A LYS 125 n 119 A LYS 125 A GLU 125 n 120 B GLU 125 A SER 125 n 121 C SER 125 A SER 126 n 122 SER 126 A TRP 127 n 123 TRP 127 A PRO 128 n 124 PRO 128 A ASN 129 n 125 ASN 129 A HIS 130 n 126 HIS 130 A ASN 131 n 127 ASN 131 A THR 132 n 128 THR 132 A ASN 133 n 129 ASN 133 A GLY 134 n 130 GLY 134 A VAL 135 n 131 VAL 135 A THR 136 n 132 THR 136 A ALA 137 n 133 ALA 137 A ALA 138 n 134 ALA 138 A CYS 139 n 135 CYS 139 A SER 140 n 136 SER 140 A HIS 141 n 137 HIS 141 A GLU 142 n 138 GLU 142 A GLY 143 n 139 GLY 143 A LYS 144 n 140 LYS 144 A SER 145 n 141 SER 145 A SER 146 n 142 SER 146 A PHE 147 n 143 PHE 147 A TYR 148 n 144 TYR 148 A ARG 149 n 145 ARG 149 A ASN 150 n 146 ASN 150 A LEU 151 n 147 LEU 151 A LEU 152 n 148 LEU 152 A TRP 153 n 149 TRP 153 A LEU 154 n 150 LEU 154 A THR 155 n 151 THR 155 A GLU 156 n 152 GLU 156 A LYS 157 n 153 LYS 157 A GLU 158 n 154 GLU 158 A GLY 159 n 155 GLY 159 A SER 160 n 156 SER 160 A TYR 161 n 157 TYR 161 A PRO 162 n 158 PRO 162 A LYS 163 n 159 LYS 163 A LEU 164 n 160 LEU 164 A LYS 165 n 161 LYS 165 A ASN 166 n 162 ASN 166 A SER 167 n 163 SER 167 A TYR 168 n 164 TYR 168 A VAL 169 n 165 VAL 169 A ASN 170 n 166 ASN 170 A LYS 171 n 167 LYS 171 A LYS 172 n 168 LYS 172 A GLY 173 n 169 GLY 173 A LYS 174 n 170 LYS 174 A GLU 175 n 171 GLU 175 A VAL 176 n 172 VAL 176 A LEU 177 n 173 LEU 177 A VAL 178 n 174 VAL 178 A LEU 179 n 175 LEU 179 A TRP 180 n 176 TRP 180 A GLY 181 n 177 GLY 181 A ILE 182 n 178 ILE 182 A HIS 183 n 179 HIS 183 A HIS 184 n 180 HIS 184 A PRO 185 n 181 PRO 185 A PRO 186 n 182 PRO 186 A ASN 187 n 183 ASN 187 A SER 188 n 184 SER 188 A LYS 189 n 185 LYS 189 A GLU 190 n 186 GLU 190 A GLN 191 n 187 GLN 191 A GLN 192 n 188 GLN 192 A ASN 193 n 189 ASN 193 A LEU 194 n 190 LEU 194 A TYR 195 n 191 TYR 195 A GLN 196 n 192 GLN 196 A ASN 197 n 193 ASN 197 A GLU 198 n 194 GLU 198 A ASN 199 n 195 ASN 199 A ALA 200 n 196 ALA 200 A TYR 201 n 197 TYR 201 A VAL 202 n 198 VAL 202 A SER 203 n 199 SER 203 A VAL 204 n 200 VAL 204 A VAL 205 n 201 VAL 205 A THR 206 n 202 THR 206 A SER 207 n 203 SER 207 A ASN 208 n 204 ASN 208 A TYR 209 n 205 TYR 209 A ASN 210 n 206 ASN 210 A ARG 211 n 207 ARG 211 A ARG 212 n 208 ARG 212 A PHE 213 n 209 PHE 213 A THR 214 n 210 THR 214 A PRO 215 n 211 PRO 215 A GLU 216 n 212 GLU 216 A ILE 217 n 213 ILE 217 A ALA 218 n 214 ALA 218 A GLU 219 n 215 GLU 219 A ARG 220 n 216 ARG 220 A PRO 221 n 217 PRO 221 A LYS 222 n 218 LYS 222 A VAL 223 n 219 VAL 223 A ARG 224 n 220 ARG 224 A ASP 225 n 221 ASP 225 A GLN 226 n 222 GLN 226 A ALA 227 n 223 ALA 227 A GLY 228 n 224 GLY 228 A ARG 229 n 225 ARG 229 A MET 230 n 226 MET 230 A ASN 231 n 227 ASN 231 A TYR 232 n 228 TYR 232 A TYR 233 n 229 TYR 233 A TRP 234 n 230 TRP 234 A THR 235 n 231 THR 235 A LEU 236 n 232 LEU 236 A LEU 237 n 233 LEU 237 A LYS 238 n 234 LYS 238 A PRO 239 n 235 PRO 239 A GLY 240 n 236 GLY 240 A ASP 241 n 237 ASP 241 A THR 242 n 238 THR 242 A ILE 243 n 239 ILE 243 A ILE 244 n 240 ILE 244 A PHE 245 n 241 PHE 245 A GLU 246 n 242 GLU 246 A ALA 247 n 243 ALA 247 A ASN 248 n 244 ASN 248 A GLY 249 n 245 GLY 249 A ASN 250 n 246 ASN 250 A LEU 251 n 247 LEU 251 A ILE 252 n 248 ILE 252 A ALA 253 n 249 ALA 253 A PRO 254 n 250 PRO 254 A MET 255 n 251 MET 255 A TYR 256 n 252 TYR 256 A ALA 257 n 253 ALA 257 A PHE 258 n 254 PHE 258 A ALA 259 n 255 ALA 259 A LEU 260 n 256 LEU 260 A SER 261 n 257 SER 261 A ARG 262 n 258 ARG 262 A GLY 263 n 259 GLY 263 A PHE 264 n 260 PHE 264 A GLY 264 n 261 A GLY 264 A SER 265 n 262 SER 265 A GLY 266 n 263 GLY 266 A ILE 267 n 264 ILE 267 A ILE 268 n 265 ILE 268 A THR 269 n 266 THR 269 A SER 270 n 267 SER 270 A ASN 271 n 268 ASN 271 A ALA 272 n 269 ALA 272 A SER 273 n 270 SER 273 A MET 274 n 271 MET 274 A HIS 275 n 272 HIS 275 A GLU 276 n 273 GLU 276 A CYS 277 n 274 CYS 277 A ASN 278 n 275 ASN 278 A THR 279 n 276 THR 279 A LYS 280 n 277 LYS 280 A CYS 281 n 278 CYS 281 A GLN 282 n 279 GLN 282 A THR 283 n 280 THR 283 A PRO 284 n 281 PRO 284 A LEU 285 n 282 LEU 285 A GLY 286 n 283 GLY 286 A ALA 287 n 284 ALA 287 A ILE 288 n 285 ILE 288 A ASN 289 n 286 ASN 289 A SER 290 n 287 SER 290 A SER 291 n 288 SER 291 A LEU 292 n 289 LEU 292 A PRO 293 n 290 PRO 293 A TYR 294 n 291 TYR 294 A GLN 295 n 292 GLN 295 A ASN 296 n 293 ASN 296 A ILE 297 n 294 ILE 297 A HIS 298 n 295 HIS 298 A PRO 299 n 296 PRO 299 A VAL 300 n 297 VAL 300 A THR 301 n 298 THR 301 A ILE 302 n 299 ILE 302 A GLY 303 n 300 GLY 303 A GLU 304 n 301 GLU 304 A CYS 305 n 302 CYS 305 A PRO 306 n 303 PRO 306 A LYS 307 n 304 LYS 307 A TYR 308 n 305 TYR 308 A VAL 309 n 306 VAL 309 A ARG 310 n 307 ARG 310 A SER 311 n 308 SER 311 A ALA 312 n 309 ALA 312 A LYS 313 n 310 LYS 313 A LEU 314 n 311 LEU 314 A ARG 315 n 312 ARG 315 A MET 316 n 313 MET 316 A VAL 317 n 314 VAL 317 A THR 318 n 315 THR 318 A GLY 319 n 316 GLY 319 A LEU 320 n 317 LEU 320 A ARG 321 n 318 ARG 321 A ASN 322 n 319 ASN 322 A ILE 323 n 320 ILE 323 A PRO 324 n 321 PRO 324 A SER 325 n 322 SER 325 A n 323 326 A n 324 327 A n 325 328 A n 326 329 A GLY 1 n 1 GLY 1 B LEU 2 n 2 LEU 2 B PHE 3 n 3 PHE 3 B GLY 4 n 4 GLY 4 B ALA 5 n 5 ALA 5 B ILE 6 n 6 ILE 6 B ALA 7 n 7 ALA 7 B GLY 8 n 8 GLY 8 B PHE 9 n 9 PHE 9 B ILE 10 n 10 ILE 10 B GLU 11 n 11 GLU 11 B GLY 12 n 12 GLY 12 B GLY 13 n 13 GLY 13 B TRP 14 n 14 TRP 14 B THR 15 n 15 THR 15 B GLY 16 n 16 GLY 16 B MET 17 n 17 MET 17 B ILE 18 n 18 ILE 18 B ASP 19 n 19 ASP 19 B GLY 20 n 20 GLY 20 B TRP 21 n 21 TRP 21 B TYR 22 n 22 TYR 22 B GLY 23 n 23 GLY 23 B TYR 24 n 24 TYR 24 B HIS 25 n 25 HIS 25 B HIS 26 n 26 HIS 26 B GLN 27 n 27 GLN 27 B ASN 28 n 28 ASN 28 B GLU 29 n 29 GLU 29 B GLN 30 n 30 GLN 30 B GLY 31 n 31 GLY 31 B SER 32 n 32 SER 32 B GLY 33 n 33 GLY 33 B TYR 34 n 34 TYR 34 B ALA 35 n 35 ALA 35 B ALA 36 n 36 ALA 36 B ASP 37 n 37 ASP 37 B GLN 38 n 38 GLN 38 B LYS 39 n 39 LYS 39 B SER 40 n 40 SER 40 B THR 41 n 41 THR 41 B GLN 42 n 42 GLN 42 B ASN 43 n 43 ASN 43 B ALA 44 n 44 ALA 44 B ILE 45 n 45 ILE 45 B ASN 46 n 46 ASN 46 B GLY 47 n 47 GLY 47 B ILE 48 n 48 ILE 48 B THR 49 n 49 THR 49 B ASN 50 n 50 ASN 50 B LYS 51 n 51 LYS 51 B VAL 52 n 52 VAL 52 B ASN 53 n 53 ASN 53 B THR 54 n 54 THR 54 B VAL 55 n 55 VAL 55 B ILE 56 n 56 ILE 56 B GLU 57 n 57 GLU 57 B LYS 58 n 58 LYS 58 B MET 59 n 59 MET 59 B ASN 60 n 60 ASN 60 B ILE 61 n 61 ILE 61 B GLN 62 n 62 GLN 62 B PHE 63 n 63 PHE 63 B THR 64 n 64 THR 64 B ALA 65 n 65 ALA 65 B VAL 66 n 66 VAL 66 B GLY 67 n 67 GLY 67 B LYS 68 n 68 LYS 68 B GLU 69 n 69 GLU 69 B PHE 70 n 70 PHE 70 B ASN 71 n 71 ASN 71 B LYS 72 n 72 LYS 72 B LEU 73 n 73 LEU 73 B GLU 74 n 74 GLU 74 B LYS 75 n 75 LYS 75 B ARG 76 n 76 ARG 76 B MET 77 n 77 MET 77 B GLU 78 n 78 GLU 78 B ASN 79 n 79 ASN 79 B LEU 80 n 80 LEU 80 B ASN 81 n 81 ASN 81 B LYS 82 n 82 LYS 82 B LYS 83 n 83 LYS 83 B VAL 84 n 84 VAL 84 B ASP 85 n 85 ASP 85 B ASP 86 n 86 ASP 86 B GLY 87 n 87 GLY 87 B PHE 88 n 88 PHE 88 B LEU 89 n 89 LEU 89 B ASP 90 n 90 ASP 90 B ILE 91 n 91 ILE 91 B TRP 92 n 92 TRP 92 B THR 93 n 93 THR 93 B TYR 94 n 94 TYR 94 B ASN 95 n 95 ASN 95 B ALA 96 n 96 ALA 96 B GLU 97 n 97 GLU 97 B LEU 98 n 98 LEU 98 B LEU 99 n 99 LEU 99 B VAL 100 n 100 VAL 100 B LEU 101 n 101 LEU 101 B LEU 102 n 102 LEU 102 B GLU 103 n 103 GLU 103 B ASN 104 n 104 ASN 104 B GLU 105 n 105 GLU 105 B ARG 106 n 106 ARG 106 B THR 107 n 107 THR 107 B LEU 108 n 108 LEU 108 B ASP 109 n 109 ASP 109 B PHE 110 n 110 PHE 110 B HIS 111 n 111 HIS 111 B ASP 112 n 112 ASP 112 B SER 113 n 113 SER 113 B ASN 114 n 114 ASN 114 B VAL 115 n 115 VAL 115 B LYS 116 n 116 LYS 116 B ASN 117 n 117 ASN 117 B LEU 118 n 118 LEU 118 B TYR 119 n 119 TYR 119 B GLU 120 n 120 GLU 120 B LYS 121 n 121 LYS 121 B VAL 122 n 122 VAL 122 B LYS 123 n 123 LYS 123 B SER 124 n 124 SER 124 B GLN 125 n 125 GLN 125 B LEU 126 n 126 LEU 126 B LYS 127 n 127 LYS 127 B ASN 128 n 128 ASN 128 B ASN 129 n 129 ASN 129 B ALA 130 n 130 ALA 130 B LYS 131 n 131 LYS 131 B GLU 132 n 132 GLU 132 B ILE 133 n 133 ILE 133 B GLY 134 n 134 GLY 134 B ASN 135 n 135 ASN 135 B GLY 136 n 136 GLY 136 B CYS 137 n 137 CYS 137 B PHE 138 n 138 PHE 138 B GLU 139 n 139 GLU 139 B PHE 140 n 140 PHE 140 B TYR 141 n 141 TYR 141 B HIS 142 n 142 HIS 142 B LYS 143 n 143 LYS 143 B CYS 144 n 144 CYS 144 B ASP 145 n 145 ASP 145 B ASN 146 n 146 ASN 146 B GLU 147 n 147 GLU 147 B CYS 148 n 148 CYS 148 B MET 149 n 149 MET 149 B GLU 150 n 150 GLU 150 B SER 151 n 151 SER 151 B VAL 152 n 152 VAL 152 B ARG 153 n 153 ARG 153 B ASN 154 n 154 ASN 154 B GLY 155 n 155 GLY 155 B THR 156 n 156 THR 156 B TYR 157 n 157 TYR 157 B ASP 158 n 158 ASP 158 B TYR 159 n 159 TYR 159 B PRO 160 n 160 PRO 160 B LYS 161 n 161 LYS 161 B TYR 162 n 162 TYR 162 B SER 163 n 163 SER 163 B GLU 164 n 164 GLU 164 B GLU 165 n 165 GLU 165 B SER 166 n 166 SER 166 B LYS 167 n 167 LYS 167 B LEU 168 n 168 LEU 168 B ASN 169 n 169 ASN 169 B ARG 170 n 170 ARG 170 B GLU 171 n 171 GLU 171 B n 172 172 B n 173 173 B n 174 174 B n 175 175 B n 176 176 B ACE 1 n 1 ACE 1 D XA 2 n 2 PH8 2 D ORN 3 n 3 ORN 3 D XB 4 n 4 MLE 4 D GLU 5 n 5 GLU 5 D TYR 6 n 6 TYR 6 D PHE 7 n 7 PHE 7 D GLU 8 n 8 GLU 8 D TRP 9 n 9 TRP 9 D LEU 10 n 10 LEU 10 D SER 11 n 11 SER 11 D XD 12 n 12 BAL 12 D 0.6666 0.5034 0.3873 0.6755 0.3104 0.3933 0.0052 -0.0741 -0.0015 0.1183 -0.0183 0.0198 0.1150 0.0137 -0.0000 0.3719 0.0631 0.0444 0.3341 0.0177 0.3066 refined -21.0910 -35.4558 -9.9274 X-RAY DIFFRACTION X-RAY DIFFRACTION 1 all author_and_software_defined_assembly PISA 9 nonameric gel filtration 36930 -200 65010 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5_555 z,x,y crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1.0000000000 0.0000000000 0.0000000000 9_555 y,z,x crystal symmetry operation 0.0000000000 0.0000000000 0.0000000000 B O GLY 31 B O GLY 31 B N ASN 28 B N ASN 28 B O HIS 25 B O HIS 25 A N CYS 14 A N CYS 4 A N ILE 13 A N ILE 3 B O PHE 138 B O PHE 138 B O GLU 139 B O GLU 139 B N LYS 131 B N LYS 131 A N VAL 26 A N VAL 16 A O VAL 34 A O VAL 24 A N VAL 40 A N VAL 30 A O MET 316 A O MET 313 A N GLU 44 A N GLU 34 A O TYR 294 A O TYR 291 A N GLN 295 A N GLN 292 A O LYS 307 A O LYS 304 A N ARG 53 A N ARG 43 A O THR 279 A O THR 276 A N LEU 59 A N LEU 50 A O VAL 88 A O VAL 80 A N GLU 89 A N GLU 81 A O ILE 268 A O ILE 265 A N ARG 83 A N ARG 74 A O PHE 118 A O PHE 111 A N GLU 119 A N GLU 112 A O ALA 259 A O ALA 255 A O LEU 260 A O LEU 256 A N GLU 175 A N GLU 171 A N GLY 181 A N GLY 177 A O ILE 252 A O ILE 248 A O ALA 253 A O ALA 249 A N LEU 152 A N LEU 148 A N ARG 83 A N ARG 74 A O PHE 118 A O PHE 111 A N GLU 119 A N GLU 112 A O ALA 259 A O ALA 255 A O LEU 260 A O LEU 256 A N GLU 175 A N GLU 171 A N VAL 178 A N VAL 174 A O THR 235 A O THR 231 A N THR 136 A N THR 132 A O SER 146 A O SER 142 A N ASN 166 A N ASN 162 A O PHE 245 A O PHE 241 A O ILE 244 A O ILE 240 A N VAL 205 A N VAL 201 A N VAL 204 A N VAL 200 A O ARG 211 A O ARG 207 A O GLY 286 A O GLY 283 A N THR 283 A N THR 280 A N GLN 282 A N GLN 279 A O ILE 302 A O ILE 299 1 B HOH 322 L HOH 1 A ILE 326 A ILE 323 1 Y 1 A GLN 327 A GLN 324 1 Y 1 A SER 328 A SER 325 1 Y 1 A ARG 329 A ARG 326 1 Y 1 B LYS 172 B LYS 172 1 Y 1 B VAL 173 B VAL 173 1 Y 1 B ASP 174 B ASP 174 1 Y 1 B GLY 175 B GLY 175 1 Y 1 B VAL 176 B VAL 176 1 Y 1 C C O4 O5 NAG NAG 1 2 1.73 1 B B O CG2 ASN THR 50 54 2.08 1 A A ND2 O5 ASN NAG 271 404 2.18 1 D D NE O ORN BAL 3 12 2.19 1 D D SER BAL 11 12 -148.02 1 -3.70 0.60 121.00 117.30 D D D CB CG CD2 TYR TYR TYR 6 6 6 N 1 3.65 0.60 121.00 124.65 D D D CB CG CD1 TYR TYR TYR 6 6 6 N 1 D D CA C GLU GLU 5 5 -0.157 0.026 1.525 1.368 N 1 D D CB CG TYR TYR 6 6 -0.136 0.015 1.512 1.376 N 1 D D CA C TYR TYR 6 6 -0.170 0.026 1.525 1.355 N 1 D D CB CG PHE PHE 7 7 -0.126 0.017 1.509 1.383 N 1 D D CA C GLU GLU 8 8 -0.172 0.026 1.525 1.353 N 1 D D CG CD2 TRP TRP 9 9 -0.126 0.017 1.432 1.306 N 1 D D CE2 CD2 TRP TRP 9 9 -0.102 0.012 1.409 1.307 N 1 D D CA C LEU LEU 10 10 -0.185 0.026 1.525 1.340 N 1 D D CA C SER SER 11 11 -0.160 0.026 1.525 1.365 N 1 A ASN 20 -145.79 -159.46 A 1 A LYS 125 -51.32 -79.54 C 1 A SER 125 99.02 49.71 1 A SER 126 -146.38 -49.27 1 A TRP 127 -114.01 64.44 1 A CYS 139 -105.09 60.80 1 A SER 146 -141.60 -159.78 1 A GLN 196 58.28 14.99 1 A THR 206 -131.95 -153.90 1 A ASN 210 -160.82 103.89 1 B ALA 5 -91.35 -66.09 1 B ALA 35 -161.10 108.68 1 B LYS 127 -141.83 -107.48 0.2510 0.2098 0.2119 2.461 31.646 1273 25047 5.08 98.37 0.38 1 FREE R-VALUE 1.34 MOLECULAR REPLACEMENT 29.34 0.90 1.11 1RU7 2.461 31.646 57 4172 86 0 4029 0.007 4223 0.964 5721 12.068 1642 0.048 618 0.010 743 0.3928 0.3252 2.5592 143 2651 100.00 0.3622 0.2968 2.6756 135 2673 100.00 0.3320 0.2903 2.8166 133 2671 100.00 0.3074 0.2743 2.9930 145 2638 100.00 0.3216 0.2680 3.2239 159 2667 100.00 0.3217 0.2517 3.5479 142 2642 99.00 0.2430 0.1968 4.0604 134 2652 98.00 0.1929 0.1630 5.1122 145 2611 97.00 0.1894 0.1607 31.6483 137 2569 92.00 2.46 50 5W5U 25055 0.93 0.04 0.08 1 13.3 4.4 98.4 2.46 2.50 1.9 1249 0.65 0.44 0.9 1 4.4 100 refinement PHENIX 1.8.4_1496 data reduction HKL-2000 v712 data scaling HKL-2000 v712 phasing PHASER N Crystal structure of the A/Puerto Rico/8/1934 (H1N1) influenza virus hemagglutinin in complex with cyclic peptide CP141037 (P4) 1 N N 2 N N 3 N N 4 N N 5 N N 5 N N 5 N N 5 N N 6 N N 6 N N 7 N N 7 N N 7 N N A ASN 65 A ASN 56 HELX_P A GLY 72 A GLY 63 1 AA1 8 A ASP 104 A ASP 97 HELX_P A SER 113 A SER 106 1 AA2 10 A ASN 187 A ASN 183 HELX_P A GLN 196 A GLN 192 1 AA3 10 B ASP 37 B ASP 37 HELX_P B MET 59 B MET 59 1 AA4 23 B GLU 74 B GLU 74 HELX_P B LEU 126 B LEU 126 1 AA5 53 B ASP 145 B ASP 145 HELX_P B ASN 154 B ASN 154 1 AA6 10 B ASP 158 B ASP 158 HELX_P B GLU 171 B GLU 171 1 AA7 14 disulf 2.033 A CYS 14 A SG CYS 4 1_555 B CYS 137 B SG CYS 137 1_555 disulf 2.032 A CYS 52 A SG CYS 42 1_555 A CYS 277 A SG CYS 274 1_555 disulf 2.027 A CYS 64 A SG CYS 55 1_555 A CYS 76 A SG CYS 67 1_555 disulf 2.031 A CYS 97 A SG CYS 90 1_555 A CYS 139 A SG CYS 135 1_555 disulf 2.031 A CYS 281 A SG CYS 278 1_555 A CYS 305 A SG CYS 302 1_555 disulf 2.033 B CYS 144 B SG CYS 144 1_555 B CYS 148 B SG CYS 148 1_555 covale 1.437 one N-Glycosylation A ASN 21 A ND2 ASN 11 1_555 A NAG 403 G C1 NAG 1_555 covale 1.425 one N-Glycosylation A ASN 33 A ND2 ASN 23 1_555 A NAG 402 F C1 NAG 1_555 covale 1.434 one N-Glycosylation A ASN 271 A ND2 ASN 268 1_555 A NAG 404 H C1 NAG 1_555 covale 1.437 one N-Glycosylation A ASN 289 A ND2 ASN 286 1_555 A NAG 401 E C1 NAG 1_555 covale 1.446 one N-Glycosylation B ASN 154 B ND2 ASN 154 1_555 C NAG 1 D C1 NAG 1_555 covale 1.308 both D ACE 1 C C ACE 1 1_555 D PH8 2 C N PH8 2 1_555 covale 1.311 both D PH8 2 C C PH8 2 1_555 D ORN 3 C N ORN 3 1_555 covale 1.336 both D ORN 3 C C ORN 3 1_555 D MLE 4 C N MLE 4 1_555 covale 1.380 both D ORN 3 C NE ORN 3 1_555 D BAL 12 C C BAL 12 1_555 covale 1.371 both D MLE 4 C C MLE 4 1_555 D GLU 5 C N GLU 5 1_555 covale 1.369 both D SER 11 C C SER 11 1_555 D BAL 12 C N BAL 12 1_555 covale 1.121 both C NAG 1 D O4 NAG 1_555 C NAG 2 D C1 NAG 1_555 VIRAL PROTEIN Glycoprotein, Ectodomain, N-glycosylation, VIRAL PROTEIN HEMA_I34A1 UNP 1 18 P03452 DTICIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCRLKGIAPLQLGKCNIAGWLLGNPECDPLLPVRSWSYIV ETPNSENGICYPGDFIDYEELREQLSSVSSFERFEIFPKESSWPNHNTNGVTAACSHEGKSSFYRNLLWLTEKEGSYPKL KNSYVNKKGKEVLVLWGIHHPPNSKEQQNLYQNENAYVSVVTSNYNRRFTPEIAERPKVRDQAGRMNYYWTLLKPGDTII FEANGNLIAPMYAFALSRGFGSGIITSNASMHECNTKCQTPLGAINSSLPYQNIHPVTIGECPKYVRSAKLRMVTGLRNI PSIQSR HEMA_I34A1 UNP 2 344 P03452 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAINGITNKVNTVIEKMNIQFTAVGKEFNKLEKRMENL NKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVKNLYEKVKSQLKNNAKEIGNGCFEFYHKCDNECMESVRNGTYDYP KYSEESKLNREKVDGV 5W5U PDB 3 1 5W5U 18 343 5W5U 11 329 P03452 A 1 1 326 344 519 5W5U 1 176 P03452 B 2 1 176 1 12 5W5U 1 12 5W5U D 3 1 12 5 2 2 3 2 3 6 5 2 4 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel parallel parallel parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel B GLY 31 B GLY 31 B ALA 36 B ALA 36 B TYR 22 B TYR 22 B ASN 28 B ASN 28 A THR 12 A THR 2 A TYR 17 A TYR 7 B CYS 137 B CYS 137 B PHE 140 B PHE 140 B ALA 130 B ALA 130 B GLU 132 B GLU 132 A ASP 24 A ASP 14 A VAL 26 A VAL 16 A VAL 34 A VAL 24 A VAL 36 A VAL 26 A SER 39 A SER 29 A ASN 41 A ASN 31 A ARG 315 A ARG 312 A VAL 317 A VAL 314 A LEU 43 A LEU 33 A GLU 44 A GLU 34 A TYR 294 A TYR 291 A GLN 295 A GLN 292 A LYS 307 A LYS 304 A TYR 308 A TYR 305 A LEU 51 A LEU 41 A LEU 54 A LEU 44 A MET 274 A MET 271 A THR 279 A THR 276 A LEU 59 A LEU 50 A GLN 60 A GLN 51 A ILE 87 A ILE 79 A GLU 89 A GLU 81 A ILE 267 A ILE 264 A THR 269 A THR 266 A VAL 82 A VAL 73 A SER 83 A SER 75 A A VAL 115 A VAL 108 A GLU 122 A GLU 115 A TYR 256 A TYR 252 A ARG 262 A ARG 258 A GLU 175 A GLU 171 A HIS 184 A HIS 180 A LEU 251 A LEU 247 A PRO 254 A PRO 250 A LEU 151 A LEU 147 A TRP 153 A TRP 149 A VAL 82 A VAL 73 A SER 83 A SER 75 A A VAL 115 A VAL 108 A GLU 122 A GLU 115 A TYR 256 A TYR 252 A ARG 262 A ARG 258 A GLU 175 A GLU 171 A HIS 184 A HIS 180 A ARG 229 A ARG 225 A LEU 237 A LEU 233 A THR 136 A THR 132 A HIS 141 A HIS 137 A LYS 144 A LYS 140 A SER 146 A SER 142 A LEU 164 A LEU 160 A VAL 169 A VAL 165 A THR 242 A THR 238 A ALA 247 A ALA 243 A VAL 202 A VAL 198 A VAL 205 A VAL 201 A ASN 210 A ASN 206 A PHE 213 A PHE 209 A GLY 286 A GLY 283 A ALA 287 A ALA 284 A CYS 281 A CYS 278 A THR 283 A THR 280 A ILE 302 A ILE 299 A GLY 303 A GLY 300 199 I 21 3