0.009876 0.000000 0.003991 0.000000 0.017212 0.000000 0.000000 0.000000 0.021687 0.000000 0.000000 0.000000 Lovell, S. Battaile, K.P. Mehzabeen, N. Kankanamalage, A.C.G. Kim, Y. Rathnayake, A.D. Chang, K.O. Groutas, W.C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 112.000 90.000 101.253 58.099 49.734 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C31 H48 N4 O10 S 668.799 (1R,2S)-2-{[N-({[4-benzyl-1-(tert-butoxycarbonyl)piperidin-4-yl]oxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid bound form non-polymer C31 H48 N4 O10 S 668.799 (1S,2S)-2-{[N-({[4-benzyl-1-(tert-butoxycarbonyl)piperidin-4-yl]oxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 S C N 75 N C N 76 S C N 77 N C N 78 N C Y 79 N C N 80 N C N 81 N C N 82 S C N 83 N C N 84 N C N 85 N C N 86 N C N 87 N C N 88 N C N 89 R C N 90 N C Y 91 N C Y 92 N C Y 93 N C Y 94 N C Y 95 N C N 96 N N N 97 N N N 98 N N N 99 N O N 100 N O N 101 N O N 102 N O N 103 N O N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N S N 135 N O N 136 N O N 137 N O N 138 N C N 139 N C N 140 N C N 141 N N N 142 N C N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N C N 151 N H N 152 N H N 153 N O N 154 N O N 155 N C N 156 N C N 157 N C N 158 N C N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 S C N 169 N C N 170 S C N 171 N C N 172 N C Y 173 N C N 174 N C N 175 N C N 176 S C N 177 N C N 178 N C N 179 N C N 180 N C N 181 N C N 182 N C N 183 S C Y 184 N C Y 185 N C Y 186 N C Y 187 N C Y 188 N C N 189 N N N 190 N N N 191 N N N 192 N O N 193 N O N 194 N O N 195 N O N 196 N O N 197 N S N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N O N 229 N O N 230 N O N 231 N C N 232 N C N 233 N N N 234 N C N 235 N C N 236 N C N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N C N 247 N O N 248 N C N 249 N C N 250 N C N 251 N C N 252 N O N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N N N 263 R C N 264 N C N 265 N O N 266 N C N 267 N S N 268 N O N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N N N 277 S C N 278 N C N 279 N O N 280 N C N 281 N C N 282 N C N 283 N O N 284 N N N 285 N O N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N N N 297 S C N 298 N C N 299 N O N 300 N C N 301 N C N 302 N C N 303 N O N 304 N O N 305 N O N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N H N 315 N N N 316 N C N 317 N C N 318 N O N 319 N O N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N N N 326 S C N 327 N C N 328 N O N 329 N C Y 330 N C Y 331 N N Y 332 N C Y 333 N C Y 334 N N N 335 N O N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N O N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 S C N 354 N C N 355 N C N 356 N C N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N N N 372 S C N 373 N C N 374 N O N 375 N C N 376 N C N 377 N C N 378 N C N 379 N O N 380 N H N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N N N 394 S C N 395 N C N 396 N O N 397 N C N 398 N C N 399 N C N 400 N C N 401 N N N 402 N O N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N N N 419 S C N 420 N C N 421 N O N 422 N C N 423 N C N 424 N S N 425 N C N 426 N O N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 437 N H N 438 N N N 439 S C N 440 N C N 441 N O N 442 N C Y 443 N C Y 444 N C Y 445 N C Y 446 N C Y 447 N C Y 448 N C N 449 N O N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N H N 461 N N N 462 S C N 463 N C N 464 N O N 465 N C N 466 N C N 467 N C N 468 N O N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N N N 479 S C N 480 N C N 481 N O N 482 N C N 483 N O N 484 N O N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N N N 493 S C N 494 N C N 495 N O N 496 R C N 497 N O N 498 N C N 499 N O N 500 N H N 501 N H N 502 N H N 503 N H N 504 N H N 505 N H N 506 N H N 507 N H N 508 N H N 509 N N N 510 S C N 511 N C N 512 N O N 513 N C Y 514 N C Y 515 N C Y 516 N C Y 517 N N Y 518 N C Y 519 N C Y 520 N C Y 521 N C Y 522 N C N 523 N O N 524 N H N 525 N H N 526 N H N 527 N H N 528 N H N 529 N H N 530 N H N 531 N H N 532 N H N 533 N H N 534 N H N 535 N H N 536 N N N 537 S C N 538 N C N 539 N O N 540 N C Y 541 N C Y 542 N C Y 543 N C Y 544 N C Y 545 N C Y 546 N C N 547 N O N 548 N O N 549 N H N 550 N H N 551 N H N 552 N H N 553 N H N 554 N H N 555 N H N 556 N H N 557 N H N 558 N H N 559 N H N 560 N N N 561 S C N 562 N C N 563 N O N 564 N C N 565 N C N 566 N C N 567 N O N 568 N H N 569 N H N 570 N H N 571 N H N 572 N H N 573 N H N 574 N H N 575 N H N 576 N H N 577 N H N 578 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N doub N 81 N doub N 82 N sing N 83 N sing N 84 N sing N 85 N sing Y 86 N doub Y 87 N sing Y 88 N sing N 89 N sing Y 90 N doub N 91 N sing Y 92 N doub Y 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N doub N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N doub N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing Y 181 N doub Y 182 N sing Y 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing Y 188 N doub Y 189 N doub Y 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N doub N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N doub N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N doub N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N doub N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N doub N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N doub N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N doub N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N doub N 328 N sing N 329 N sing N 330 N sing N 331 N sing Y 332 N sing Y 333 N doub Y 334 N doub N 335 N sing Y 336 N sing N 337 N sing Y 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N doub N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N doub N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N doub N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N doub N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N sing N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N doub N 436 N sing N 437 N sing N 438 N sing N 439 N sing Y 440 N doub Y 441 N sing Y 442 N sing N 443 N sing Y 444 N doub N 445 N sing Y 446 N doub N 447 N sing Y 448 N sing N 449 N sing N 450 N sing N 451 N sing N 452 N sing N 453 N sing N 454 N sing N 455 N sing N 456 N sing N 457 N sing N 458 N doub N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N doub N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing N 485 N sing N 486 N sing N 487 N sing N 488 N doub N 489 N sing N 490 N sing N 491 N sing N 492 N sing N 493 N sing N 494 N sing N 495 N sing N 496 N sing N 497 N sing N 498 N sing N 499 N sing N 500 N sing N 501 N sing N 502 N sing N 503 N sing N 504 N doub N 505 N sing N 506 N sing N 507 N sing N 508 N sing Y 509 N doub Y 510 N sing Y 511 N sing N 512 N sing Y 513 N doub Y 514 N sing Y 515 N sing N 516 N sing Y 517 N sing Y 518 N doub N 519 N sing Y 520 N doub N 521 N sing Y 522 N sing N 523 N sing N 524 N sing N 525 N sing N 526 N sing N 527 N sing N 528 N sing N 529 N sing N 530 N sing N 531 N sing N 532 N doub N 533 N sing N 534 N sing N 535 N sing N 536 N sing Y 537 N doub Y 538 N sing Y 539 N sing N 540 N sing Y 541 N doub N 542 N sing Y 543 N doub N 544 N sing Y 545 N sing N 546 N sing N 547 N sing N 548 N sing N 549 N sing N 550 N sing N 551 N sing N 552 N sing N 553 N sing N 554 N sing N 555 N sing N 556 N doub N 557 N sing N 558 N sing N 559 N sing N 560 N sing N 561 N sing N 562 N sing N 563 N sing N 564 N sing N 565 N sing N 566 N sing N 567 N sing FR Eur J Med Chem EJMCA5 0493 1768-3254 150 334 346 10.1016/j.ejmech.2018.03.004 29544147 Structure-guided design of potent and permeable inhibitors of MERS coronavirus 3CL protease that utilize a piperidine moiety as a novel design element. 2018 10.2210/pdb5wkl/pdb pdb_00005wkl 100 1 PIXEL 2016-06-25 DECTRIS PILATUS 6M SINGLE WAVELENGTH M x-ray 1 1.00000 1.0 17-ID APS 1.00000 SYNCHROTRON APS BEAMLINE 17-ID 34314.242 Orf1a protein Peptidase C30 domain residues 3248-3553 1 man polymer 668.799 (1R,2S)-2-{[N-({[4-benzyl-1-(tert-butoxycarbonyl)piperidin-4-yl]oxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid 1 syn non-polymer 668.799 (1S,2S)-2-{[N-({[4-benzyl-1-(tert-butoxycarbonyl)piperidin-4-yl]oxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid 1 syn non-polymer 18.015 water 128 nat water no no MHHHHHHSGLVKMSHPSGDVEACMVQVTCGSMTLNGLWLDNTVWCPRHVMCPADQLSDPNYDALLISMTNHSFSVQKHIG APANLRVVGHAMQGTLLKLTVDVANPSTPAYTFTTVKPGAAFSVLACYNGRPTGTFTVVMRPNYTIKGSFLCGSCGSVGY TKEGSVINFCYMHQMELANGTHTGSAFDGTMYGAFMDKQVHQVQLTDKYCSVNVVAWLYAAILNGCAWFVKPNRTSVVSF NEWALANQFTEFVGTQSVDMLAVKTGVAIEQLLYAIQQLYTGFQGKQILGSTMLEDEFTPEDVNMQIMGVVMQ MHHHHHHSGLVKMSHPSGDVEACMVQVTCGSMTLNGLWLDNTVWCPRHVMCPADQLSDPNYDALLISMTNHSFSVQKHIG APANLRVVGHAMQGTLLKLTVDVANPSTPAYTFTTVKPGAAFSVLACYNGRPTGTFTVVMRPNYTIKGSFLCGSCGSVGY TKEGSVINFCYMHQMELANGTHTGSAFDGTMYGAFMDKQVHQVQLTDKYCSVNVVAWLYAAILNGCAWFVKPNRTSVVSF NEWALANQFTEFVGTQSVDMLAVKTGVAIEQLLYAIQQLYTGFQGKQILGSTMLEDEFTPEDVNMQIMGVVMQ A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n sample 1 313 orf1a 1335626 Middle East respiratory syndrome-related coronavirus 511693 Escherichia coli BL21 plasmid Biological sequence pET28 1 1.98 37.76 VAPOR DIFFUSION, HANGING DROP 5.5 25% (w/v) PEG 3350, 100 mM Bis-Tris, 200 mM MgCl2 293 pdbx_audit_support chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Author supporting evidence Data collection Database references Refinement description 1 0 2018-04-04 1 1 2020-01-01 1 2 2023-10-04 _pdbx_audit_support.funding_organization _database_2.pdbx_DOI _database_2.pdbx_database_accession United States National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) P30GM110761 N RCSB Y RCSB 2017-07-25 REL REL AVY (1R,2S)-2-{[N-({[4-benzyl-1-(tert-butoxycarbonyl)piperidin-4-yl]oxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid B3J (1S,2S)-2-{[N-({[4-benzyl-1-(tert-butoxycarbonyl)piperidin-4-yl]oxy}carbonyl)-L-leucyl]amino}-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid HOH water 4RSP PDB experimental model 167 1 2 AVY AVY 401 A 167 1 3 B3J B3J 402 A HOH 51 4 HOH HOH 501 A HOH 17 4 HOH HOH 502 A HOH 126 4 HOH HOH 503 A HOH 124 4 HOH HOH 504 A HOH 99 4 HOH HOH 505 A HOH 81 4 HOH HOH 506 A HOH 84 4 HOH HOH 507 A HOH 33 4 HOH HOH 508 A HOH 6 4 HOH HOH 509 A HOH 100 4 HOH HOH 510 A HOH 3 4 HOH HOH 511 A HOH 103 4 HOH HOH 512 A HOH 49 4 HOH HOH 513 A HOH 94 4 HOH HOH 514 A HOH 39 4 HOH HOH 515 A HOH 101 4 HOH HOH 516 A HOH 55 4 HOH HOH 517 A HOH 54 4 HOH HOH 518 A HOH 45 4 HOH HOH 519 A HOH 44 4 HOH HOH 520 A HOH 128 4 HOH HOH 521 A HOH 38 4 HOH HOH 522 A HOH 10 4 HOH HOH 523 A HOH 36 4 HOH HOH 524 A HOH 1 4 HOH HOH 525 A HOH 23 4 HOH HOH 526 A HOH 76 4 HOH HOH 527 A HOH 52 4 HOH HOH 528 A HOH 9 4 HOH HOH 529 A HOH 104 4 HOH HOH 530 A HOH 42 4 HOH HOH 531 A HOH 86 4 HOH HOH 532 A HOH 72 4 HOH HOH 533 A HOH 16 4 HOH HOH 534 A HOH 5 4 HOH HOH 535 A HOH 20 4 HOH HOH 536 A HOH 24 4 HOH HOH 537 A HOH 12 4 HOH HOH 538 A HOH 92 4 HOH HOH 539 A HOH 27 4 HOH HOH 540 A HOH 108 4 HOH HOH 541 A HOH 4 4 HOH HOH 542 A HOH 107 4 HOH HOH 543 A HOH 59 4 HOH HOH 544 A HOH 111 4 HOH HOH 545 A HOH 25 4 HOH HOH 546 A HOH 30 4 HOH HOH 547 A HOH 22 4 HOH HOH 548 A HOH 95 4 HOH HOH 549 A HOH 46 4 HOH HOH 550 A HOH 98 4 HOH HOH 551 A HOH 74 4 HOH HOH 552 A HOH 11 4 HOH HOH 553 A HOH 122 4 HOH HOH 554 A HOH 18 4 HOH HOH 555 A HOH 75 4 HOH HOH 556 A HOH 63 4 HOH HOH 557 A HOH 64 4 HOH HOH 558 A HOH 40 4 HOH HOH 559 A HOH 34 4 HOH HOH 560 A HOH 105 4 HOH HOH 561 A HOH 2 4 HOH HOH 562 A HOH 56 4 HOH HOH 563 A HOH 58 4 HOH HOH 564 A HOH 61 4 HOH HOH 565 A HOH 68 4 HOH HOH 566 A HOH 7 4 HOH HOH 567 A HOH 73 4 HOH HOH 568 A HOH 87 4 HOH HOH 569 A HOH 41 4 HOH HOH 570 A HOH 43 4 HOH HOH 571 A HOH 113 4 HOH HOH 572 A HOH 91 4 HOH HOH 573 A HOH 102 4 HOH HOH 574 A HOH 57 4 HOH HOH 575 A HOH 32 4 HOH HOH 576 A HOH 31 4 HOH HOH 577 A HOH 93 4 HOH HOH 578 A HOH 90 4 HOH HOH 579 A HOH 13 4 HOH HOH 580 A HOH 85 4 HOH HOH 581 A HOH 71 4 HOH HOH 582 A HOH 109 4 HOH HOH 583 A HOH 21 4 HOH HOH 584 A HOH 29 4 HOH HOH 585 A HOH 28 4 HOH HOH 586 A HOH 67 4 HOH HOH 587 A HOH 37 4 HOH HOH 588 A HOH 19 4 HOH HOH 589 A HOH 123 4 HOH HOH 590 A HOH 82 4 HOH HOH 591 A HOH 79 4 HOH HOH 592 A HOH 127 4 HOH HOH 593 A HOH 80 4 HOH HOH 594 A HOH 118 4 HOH HOH 595 A HOH 14 4 HOH HOH 596 A HOH 106 4 HOH HOH 597 A HOH 121 4 HOH HOH 598 A HOH 47 4 HOH HOH 599 A HOH 112 4 HOH HOH 600 A HOH 83 4 HOH HOH 601 A HOH 8 4 HOH HOH 602 A HOH 77 4 HOH HOH 603 A HOH 62 4 HOH HOH 604 A HOH 114 4 HOH HOH 605 A HOH 96 4 HOH HOH 606 A HOH 89 4 HOH HOH 607 A HOH 88 4 HOH HOH 608 A HOH 26 4 HOH HOH 609 A HOH 116 4 HOH HOH 610 A HOH 97 4 HOH HOH 611 A HOH 78 4 HOH HOH 612 A HOH 66 4 HOH HOH 613 A HOH 53 4 HOH HOH 614 A HOH 65 4 HOH HOH 615 A HOH 15 4 HOH HOH 616 A HOH 35 4 HOH HOH 617 A HOH 120 4 HOH HOH 618 A HOH 70 4 HOH HOH 619 A HOH 125 4 HOH HOH 620 A HOH 69 4 HOH HOH 621 A HOH 110 4 HOH HOH 622 A HOH 50 4 HOH HOH 623 A HOH 48 4 HOH HOH 624 A HOH 115 4 HOH HOH 625 A HOH 119 4 HOH HOH 626 A HOH 117 4 HOH HOH 627 A HOH 60 4 HOH HOH 628 A n 1 -6 A n 2 -5 A n 3 -4 A n 4 -3 A n 5 -2 A HIS -1 n 6 HIS -1 A HIS 0 n 7 HIS 0 A SER 1 n 8 SER 1 A GLY 2 n 9 GLY 2 A LEU 3 n 10 LEU 3 A VAL 4 n 11 VAL 4 A LYS 5 n 12 LYS 5 A MET 6 n 13 MET 6 A SER 7 n 14 SER 7 A HIS 8 n 15 HIS 8 A PRO 9 n 16 PRO 9 A SER 10 n 17 SER 10 A GLY 11 n 18 GLY 11 A ASP 12 n 19 ASP 12 A VAL 13 n 20 VAL 13 A GLU 14 n 21 GLU 14 A ALA 15 n 22 ALA 15 A CYS 16 n 23 CYS 16 A MET 17 n 24 MET 17 A VAL 18 n 25 VAL 18 A GLN 19 n 26 GLN 19 A VAL 20 n 27 VAL 20 A THR 21 n 28 THR 21 A CYS 22 n 29 CYS 22 A GLY 23 n 30 GLY 23 A SER 24 n 31 SER 24 A MET 25 n 32 MET 25 A THR 26 n 33 THR 26 A LEU 27 n 34 LEU 27 A ASN 28 n 35 ASN 28 A GLY 29 n 36 GLY 29 A LEU 30 n 37 LEU 30 A TRP 31 n 38 TRP 31 A LEU 32 n 39 LEU 32 A ASP 33 n 40 ASP 33 A ASN 34 n 41 ASN 34 A THR 35 n 42 THR 35 A VAL 36 n 43 VAL 36 A TRP 37 n 44 TRP 37 A CYS 38 n 45 CYS 38 A PRO 39 n 46 PRO 39 A ARG 40 n 47 ARG 40 A HIS 41 n 48 HIS 41 A VAL 42 n 49 VAL 42 A MET 43 n 50 MET 43 A CYS 44 n 51 CYS 44 A PRO 45 n 52 PRO 45 A ALA 46 n 53 ALA 46 A ASP 47 n 54 ASP 47 A GLN 48 n 55 GLN 48 A LEU 49 n 56 LEU 49 A SER 50 n 57 SER 50 A ASP 51 n 58 ASP 51 A PRO 52 n 59 PRO 52 A ASN 53 n 60 ASN 53 A TYR 54 n 61 TYR 54 A ASP 55 n 62 ASP 55 A ALA 56 n 63 ALA 56 A LEU 57 n 64 LEU 57 A LEU 58 n 65 LEU 58 A ILE 59 n 66 ILE 59 A SER 60 n 67 SER 60 A MET 61 n 68 MET 61 A THR 62 n 69 THR 62 A ASN 63 n 70 ASN 63 A HIS 64 n 71 HIS 64 A SER 65 n 72 SER 65 A PHE 66 n 73 PHE 66 A SER 67 n 74 SER 67 A VAL 68 n 75 VAL 68 A GLN 69 n 76 GLN 69 A LYS 70 n 77 LYS 70 A HIS 71 n 78 HIS 71 A ILE 72 n 79 ILE 72 A n 80 73 A n 81 74 A n 82 75 A ALA 76 n 83 ALA 76 A ASN 77 n 84 ASN 77 A LEU 78 n 85 LEU 78 A ARG 79 n 86 ARG 79 A VAL 80 n 87 VAL 80 A VAL 81 n 88 VAL 81 A GLY 82 n 89 GLY 82 A HIS 83 n 90 HIS 83 A ALA 84 n 91 ALA 84 A MET 85 n 92 MET 85 A GLN 86 n 93 GLN 86 A GLY 87 n 94 GLY 87 A THR 88 n 95 THR 88 A LEU 89 n 96 LEU 89 A LEU 90 n 97 LEU 90 A LYS 91 n 98 LYS 91 A LEU 92 n 99 LEU 92 A THR 93 n 100 THR 93 A VAL 94 n 101 VAL 94 A ASP 95 n 102 ASP 95 A VAL 96 n 103 VAL 96 A ALA 97 n 104 ALA 97 A ASN 98 n 105 ASN 98 A PRO 99 n 106 PRO 99 A SER 100 n 107 SER 100 A THR 101 n 108 THR 101 A PRO 102 n 109 PRO 102 A ALA 103 n 110 ALA 103 A TYR 104 n 111 TYR 104 A THR 105 n 112 THR 105 A PHE 106 n 113 PHE 106 A THR 107 n 114 THR 107 A THR 108 n 115 THR 108 A VAL 109 n 116 VAL 109 A LYS 110 n 117 LYS 110 A PRO 111 n 118 PRO 111 A GLY 112 n 119 GLY 112 A ALA 113 n 120 ALA 113 A ALA 114 n 121 ALA 114 A PHE 115 n 122 PHE 115 A SER 116 n 123 SER 116 A VAL 117 n 124 VAL 117 A LEU 118 n 125 LEU 118 A ALA 119 n 126 ALA 119 A CYS 120 n 127 CYS 120 A TYR 121 n 128 TYR 121 A ASN 122 n 129 ASN 122 A GLY 123 n 130 GLY 123 A ARG 124 n 131 ARG 124 A PRO 125 n 132 PRO 125 A THR 126 n 133 THR 126 A GLY 127 n 134 GLY 127 A THR 128 n 135 THR 128 A PHE 129 n 136 PHE 129 A THR 130 n 137 THR 130 A VAL 131 n 138 VAL 131 A VAL 132 n 139 VAL 132 A MET 133 n 140 MET 133 A ARG 134 n 141 ARG 134 A PRO 135 n 142 PRO 135 A ASN 136 n 143 ASN 136 A TYR 137 n 144 TYR 137 A THR 138 n 145 THR 138 A ILE 139 n 146 ILE 139 A LYS 140 n 147 LYS 140 A GLY 141 n 148 GLY 141 A SER 142 n 149 SER 142 A PHE 143 n 150 PHE 143 A LEU 144 n 151 LEU 144 A CYS 145 n 152 CYS 145 A GLY 146 n 153 GLY 146 A SER 147 n 154 SER 147 A CYS 148 n 155 CYS 148 A GLY 149 n 156 GLY 149 A SER 150 n 157 SER 150 A VAL 151 n 158 VAL 151 A GLY 152 n 159 GLY 152 A TYR 153 n 160 TYR 153 A THR 154 n 161 THR 154 A LYS 155 n 162 LYS 155 A GLU 156 n 163 GLU 156 A GLY 157 n 164 GLY 157 A SER 158 n 165 SER 158 A VAL 159 n 166 VAL 159 A ILE 160 n 167 ILE 160 A ASN 161 n 168 ASN 161 A PHE 162 n 169 PHE 162 A CYS 163 n 170 CYS 163 A TYR 164 n 171 TYR 164 A MET 165 n 172 MET 165 A HIS 166 n 173 HIS 166 A GLN 167 n 174 GLN 167 A MET 168 n 175 MET 168 A GLU 169 n 176 GLU 169 A LEU 170 n 177 LEU 170 A ALA 171 n 178 ALA 171 A ASN 172 n 179 ASN 172 A GLY 173 n 180 GLY 173 A THR 174 n 181 THR 174 A HIS 175 n 182 HIS 175 A THR 176 n 183 THR 176 A GLY 177 n 184 GLY 177 A SER 178 n 185 SER 178 A ALA 179 n 186 ALA 179 A PHE 180 n 187 PHE 180 A ASP 181 n 188 ASP 181 A GLY 182 n 189 GLY 182 A THR 183 n 190 THR 183 A MET 184 n 191 MET 184 A TYR 185 n 192 TYR 185 A GLY 186 n 193 GLY 186 A ALA 187 n 194 ALA 187 A PHE 188 n 195 PHE 188 A MET 189 n 196 MET 189 A ASP 190 n 197 ASP 190 A LYS 191 n 198 LYS 191 A GLN 192 n 199 GLN 192 A VAL 193 n 200 VAL 193 A HIS 194 n 201 HIS 194 A GLN 195 n 202 GLN 195 A VAL 196 n 203 VAL 196 A GLN 197 n 204 GLN 197 A LEU 198 n 205 LEU 198 A THR 199 n 206 THR 199 A ASP 200 n 207 ASP 200 A LYS 201 n 208 LYS 201 A TYR 202 n 209 TYR 202 A CYS 203 n 210 CYS 203 A SER 204 n 211 SER 204 A VAL 205 n 212 VAL 205 A ASN 206 n 213 ASN 206 A VAL 207 n 214 VAL 207 A VAL 208 n 215 VAL 208 A ALA 209 n 216 ALA 209 A TRP 210 n 217 TRP 210 A LEU 211 n 218 LEU 211 A TYR 212 n 219 TYR 212 A ALA 213 n 220 ALA 213 A ALA 214 n 221 ALA 214 A ILE 215 n 222 ILE 215 A LEU 216 n 223 LEU 216 A ASN 217 n 224 ASN 217 A GLY 218 n 225 GLY 218 A CYS 219 n 226 CYS 219 A ALA 220 n 227 ALA 220 A TRP 221 n 228 TRP 221 A PHE 222 n 229 PHE 222 A VAL 223 n 230 VAL 223 A LYS 224 n 231 LYS 224 A PRO 225 n 232 PRO 225 A ASN 226 n 233 ASN 226 A ARG 227 n 234 ARG 227 A THR 228 n 235 THR 228 A SER 229 n 236 SER 229 A VAL 230 n 237 VAL 230 A VAL 231 n 238 VAL 231 A SER 232 n 239 SER 232 A PHE 233 n 240 PHE 233 A ASN 234 n 241 ASN 234 A GLU 235 n 242 GLU 235 A TRP 236 n 243 TRP 236 A ALA 237 n 244 ALA 237 A LEU 238 n 245 LEU 238 A ALA 239 n 246 ALA 239 A ASN 240 n 247 ASN 240 A GLN 241 n 248 GLN 241 A PHE 242 n 249 PHE 242 A THR 243 n 250 THR 243 A GLU 244 n 251 GLU 244 A PHE 245 n 252 PHE 245 A VAL 246 n 253 VAL 246 A GLY 247 n 254 GLY 247 A THR 248 n 255 THR 248 A GLN 249 n 256 GLN 249 A SER 250 n 257 SER 250 A VAL 251 n 258 VAL 251 A ASP 252 n 259 ASP 252 A MET 253 n 260 MET 253 A LEU 254 n 261 LEU 254 A ALA 255 n 262 ALA 255 A VAL 256 n 263 VAL 256 A LYS 257 n 264 LYS 257 A THR 258 n 265 THR 258 A GLY 259 n 266 GLY 259 A VAL 260 n 267 VAL 260 A ALA 261 n 268 ALA 261 A ILE 262 n 269 ILE 262 A GLU 263 n 270 GLU 263 A GLN 264 n 271 GLN 264 A LEU 265 n 272 LEU 265 A LEU 266 n 273 LEU 266 A TYR 267 n 274 TYR 267 A ALA 268 n 275 ALA 268 A ILE 269 n 276 ILE 269 A GLN 270 n 277 GLN 270 A GLN 271 n 278 GLN 271 A LEU 272 n 279 LEU 272 A TYR 273 n 280 TYR 273 A THR 274 n 281 THR 274 A GLY 275 n 282 GLY 275 A PHE 276 n 283 PHE 276 A GLN 277 n 284 GLN 277 A GLY 278 n 285 GLY 278 A LYS 279 n 286 LYS 279 A GLN 280 n 287 GLN 280 A ILE 281 n 288 ILE 281 A LEU 282 n 289 LEU 282 A GLY 283 n 290 GLY 283 A SER 284 n 291 SER 284 A THR 285 n 292 THR 285 A MET 286 n 293 MET 286 A LEU 287 n 294 LEU 287 A GLU 288 n 295 GLU 288 A ASP 289 n 296 ASP 289 A GLU 290 n 297 GLU 290 A PHE 291 n 298 PHE 291 A THR 292 n 299 THR 292 A PRO 293 n 300 PRO 293 A GLU 294 n 301 GLU 294 A ASP 295 n 302 ASP 295 A VAL 296 n 303 VAL 296 A ASN 297 n 304 ASN 297 A MET 298 n 305 MET 298 A GLN 299 n 306 GLN 299 A ILE 300 n 307 ILE 300 A MET 301 n 308 MET 301 A GLY 302 n 309 GLY 302 A VAL 303 n 310 VAL 303 A VAL 304 n 311 VAL 304 A n 312 305 A n 313 306 A author_and_software_defined_assembly PISA 2 dimeric gel filtration 2460 -16 23960 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_556 -x,y,-z+1 crystal symmetry operation -18.6306843169 0.0000000000 46.1125618230 A O LEU 78 A O LEU 85 A N VAL 68 A N VAL 75 A O GLN 69 A O GLN 76 A N GLN 19 A N GLN 26 A N VAL 20 A N VAL 27 A O LEU 27 A O LEU 34 A N LEU 32 A N LEU 39 A O THR 35 A O THR 42 A N VAL 36 A N VAL 43 A O LEU 92 A O LEU 99 A O THR 93 A O THR 100 A N VAL 81 A N VAL 88 A N THR 105 A N THR 112 A O PHE 162 A O PHE 169 A O TYR 164 A O TYR 171 A N GLY 152 A N GLY 159 A O TYR 153 A O TYR 160 A N SER 116 A N SER 123 A N VAL 117 A N VAL 124 A O PHE 129 A O PHE 136 A N THR 105 A N THR 112 A O PHE 162 A O PHE 169 A N MET 165 A N MET 172 A O SER 178 A O SER 185 1 A HOH 622 D HOH 1 A CG ASP 47 A CG ASP 54 1 Y 1 A OD1 ASP 47 A OD1 ASP 54 1 Y 1 A OD2 ASP 47 A OD2 ASP 54 1 Y 1 A CG GLN 48 A CG GLN 55 1 Y 1 A CD GLN 48 A CD GLN 55 1 Y 1 A OE1 GLN 48 A OE1 GLN 55 1 Y 1 A NE2 GLN 48 A NE2 GLN 55 1 Y 1 A CG ASP 51 A CG ASP 58 1 Y 1 A OD1 ASP 51 A OD1 ASP 58 1 Y 1 A OD2 ASP 51 A OD2 ASP 58 1 Y 1 A CE LYS 70 A CE LYS 77 1 Y 1 A NZ LYS 70 A NZ LYS 77 1 Y 1 A CG1 ILE 72 A CG1 ILE 79 1 Y 1 A CG2 ILE 72 A CG2 ILE 79 1 Y 1 A CD1 ILE 72 A CD1 ILE 79 1 Y 1 A CD ARG 124 A CD ARG 131 1 Y 1 A NE ARG 124 A NE ARG 131 1 Y 1 A CZ ARG 124 A CZ ARG 131 1 Y 1 A NH1 ARG 124 A NH1 ARG 131 1 Y 1 A NH2 ARG 124 A NH2 ARG 131 1 Y 1 A CE LYS 155 A CE LYS 162 1 Y 1 A NZ LYS 155 A NZ LYS 162 1 Y 1 A CD GLU 156 A CD GLU 163 1 Y 1 A OE1 GLU 156 A OE1 GLU 163 1 Y 1 A OE2 GLU 156 A OE2 GLU 163 1 Y 1 A CG MET 189 A CG MET 196 1 Y 1 A SD MET 189 A SD MET 196 1 Y 1 A CE MET 189 A CE MET 196 1 Y 1 A CG LYS 191 A CG LYS 198 1 Y 1 A CD LYS 191 A CD LYS 198 1 Y 1 A CE LYS 191 A CE LYS 198 1 Y 1 A NZ LYS 191 A NZ LYS 198 1 Y 1 A CG HIS 194 A CG HIS 201 1 Y 1 A ND1 HIS 194 A ND1 HIS 201 1 Y 1 A CD2 HIS 194 A CD2 HIS 201 1 Y 1 A CE1 HIS 194 A CE1 HIS 201 1 Y 1 A NE2 HIS 194 A NE2 HIS 201 1 Y 1 A CD GLN 197 A CD GLN 204 1 Y 1 A OE1 GLN 197 A OE1 GLN 204 1 Y 1 A NE2 GLN 197 A NE2 GLN 204 1 Y 1 A CG LEU 198 A CG LEU 205 1 Y 1 A CD1 LEU 198 A CD1 LEU 205 1 Y 1 A CD2 LEU 198 A CD2 LEU 205 1 Y 1 A CE LYS 201 A CE LYS 208 1 Y 1 A NZ LYS 201 A NZ LYS 208 1 Y 1 A CE LYS 224 A CE LYS 231 1 Y 1 A NZ LYS 224 A NZ LYS 231 1 Y 1 A CG GLU 235 A CG GLU 242 1 Y 1 A CD GLU 235 A CD GLU 242 1 Y 1 A OE1 GLU 235 A OE1 GLU 242 1 Y 1 A OE2 GLU 235 A OE2 GLU 242 1 Y 1 A CD GLN 241 A CD GLN 248 1 Y 1 A OE1 GLN 241 A OE1 GLN 248 1 Y 1 A NE2 GLN 241 A NE2 GLN 248 1 Y 1 A CG GLN 249 A CG GLN 256 1 Y 1 A CD GLN 249 A CD GLN 256 1 Y 1 A OE1 GLN 249 A OE1 GLN 256 1 Y 1 A NE2 GLN 249 A NE2 GLN 256 1 Y 1 A CD LYS 257 A CD LYS 264 1 Y 1 A CE LYS 257 A CE LYS 264 1 Y 1 A NZ LYS 257 A NZ LYS 264 1 Y 1 A CG GLN 277 A CG GLN 284 1 Y 1 A CD GLN 277 A CD GLN 284 1 Y 1 A OE1 GLN 277 A OE1 GLN 284 1 Y 1 A NE2 GLN 277 A NE2 GLN 284 1 Y 1 A CE LYS 279 A CE LYS 286 1 Y 1 A NZ LYS 279 A NZ LYS 286 1 Y 1 A CD GLN 280 A CD GLN 287 1 Y 1 A OE1 GLN 280 A OE1 GLN 287 1 Y 1 A NE2 GLN 280 A NE2 GLN 287 1 Y 1 A CG GLU 290 A CG GLU 297 1 Y 1 A CD GLU 290 A CD GLU 297 1 Y 1 A OE1 GLU 290 A OE1 GLU 297 1 Y 1 A OE2 GLU 290 A OE2 GLU 297 1 Y 1 A C1 AVY 401 B C1 AVY 1 1 N 1 A C2 AVY 401 B C2 AVY 1 1 N 1 A C3 AVY 401 B C3 AVY 1 1 N 1 A N1 AVY 401 B N1 AVY 1 1 N 1 A C5 AVY 401 B C5 AVY 1 1 N 1 A C4 AVY 401 B C4 AVY 1 1 N 1 A O4 AVY 401 B O4 AVY 1 1 N 1 A O5 AVY 401 B O5 AVY 1 1 N 1 A C8 AVY 401 B C8 AVY 1 1 N 1 A C9 AVY 401 B C9 AVY 1 1 N 1 A C10 AVY 401 B C10 AVY 1 1 N 1 A C15 AVY 401 B C15 AVY 1 1 N 1 A C1 B3J 402 C C1 B3J 1 1 N 1 A C2 B3J 402 C C2 B3J 1 1 N 1 A N1 B3J 402 C N1 B3J 1 1 N 1 A C4 B3J 402 C C4 B3J 1 1 N 1 A C5 B3J 402 C C5 B3J 1 1 N 1 A C3 B3J 402 C C3 B3J 1 1 N 1 A O5 B3J 402 C O5 B3J 1 1 N 1 A C8 B3J 402 C C8 B3J 1 1 N 1 A C9 B3J 402 C C9 B3J 1 1 N 1 A C10 B3J 402 C C10 B3J 1 1 N 1 A C15 B3J 402 C C15 B3J 1 1 N 1 A O4 B3J 402 C O4 B3J 1 1 N 1 A MET -6 A MET 1 1 Y 1 A HIS -5 A HIS 2 1 Y 1 A HIS -4 A HIS 3 1 Y 1 A HIS -3 A HIS 4 1 Y 1 A HIS -2 A HIS 5 1 Y 1 A GLY 73 A GLY 80 1 Y 1 A ALA 74 A ALA 81 1 Y 1 A PRO 75 A PRO 82 1 Y 1 A MET 305 A MET 312 1 Y 1 A GLN 306 A GLN 313 1 Y 1 A A O O HIS HOH -1 501 2.16 1 A ASP 33 55.09 -132.37 1 A ALA 220 -141.12 16.36 80.380 28.4508 10.840 0.2119 0.1630 0.1655 1.8500 46.9380 1127 22761 4.9500 99.0200 0.1800 1 FREE R-VALUE 1.010 MOLECULAR REPLACEMENT 22.5000 0.9000 1.1100 4RSP 1.8500 46.9380 128 2430 27.39 32.90 60 0 2242 303 0.010 2376 1.072 3247 0.058 378 0.007 409 11.689 1358 0.2723 0.0000 0.2383 1.9342 121 2698 2819 8 99.0000 0.2553 0.0000 0.1966 2.0362 148 2691 2839 8 99.0000 0.2421 0.0000 0.1720 2.1638 152 2717 2869 8 100.0000 0.2225 0.0000 0.1661 2.3309 132 2703 2835 8 99.0000 0.2341 0.0000 0.1648 2.5654 138 2697 2835 8 99.0000 0.2246 0.0000 0.1658 2.9366 142 2710 2852 8 99.0000 0.2139 0.0000 0.1560 3.6995 149 2686 2835 8 99.0000 0.1699 0.0000 0.1450 46.9535 145 2732 2877 8 98.0000 22.320 1.850 46.940 5WKL 22772 0.997 0.078 1 11.300 3.300 99.100 0.686 1.850 1.890 4502 1400 0.774 1 3.200 99.000 0.025 9.060 46.940 0.999 1 3.200 92.700 data scaling Aimless 0.5.25 phasing PHASER refinement PHENIX (dev_2838) data extraction PDB_EXTRACT 3.22 data reduction XDS N 1.85 A resolution structure of MERS 3CL protease in complex with piperidine-based peptidomimetic inhibitor 17 1 N N 2 N N 3 N N 4 N N A SER 10 A SER 17 HELX_P A ALA 15 A ALA 22 1 AA1 6 A HIS 41 A HIS 48 HELX_P A CYS 44 A CYS 51 5 AA2 4 A PRO 45 A PRO 52 HELX_P A LEU 49 A LEU 56 5 AA3 5 A ASN 53 A ASN 60 HELX_P A MET 61 A MET 68 1 AA4 9 A THR 62 A THR 69 HELX_P A HIS 64 A HIS 71 5 AA5 3 A CYS 203 A CYS 210 HELX_P A ASN 217 A ASN 224 1 AA6 15 A SER 229 A SER 236 HELX_P A ASN 240 A ASN 247 1 AA7 12 A THR 248 A THR 255 HELX_P A GLY 259 A GLY 266 1 AA8 12 A ALA 261 A ALA 268 HELX_P A GLY 275 A GLY 282 1 AA9 15 A THR 292 A THR 299 HELX_P A GLY 302 A GLY 309 1 AB1 11 covale 1.800 none A A CYS 148 A SG CYS 155 1_555 A AVY 401 B C19 AVY 1_555 covale 1.821 none B A CYS 148 A SG CYS 155 1_555 A B3J 402 C C19 B3J 1_555 HYDROLASE/HYDROLASE INHIBITOR PROTEASE, protease Inhhibitors, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR complex A0A1L2E0X0_9BETC UNP 1 3248 A0A1L2E0X0 SGLVKMSHPSGDVEACMVQVTCGSMTLNGLWLDNTVWCPRHVMCPADQLSDPNYDALLISMTNHSFSVQKHIGAPANLRV VGHAMQGTLLKLTVDVANPSTPAYTFTTVKPGAAFSVLACYNGRPTGTFTVVMRPNYTIKGSFLCGSCGSVGYTKEGSVI NFCYMHQMELANGTHTGSAFDGTMYGAFMDKQVHQVQLTDKYCSVNVVAWLYAAILNGCAWFVKPNRTSVVSFNEWALAN QFTEFVGTQSVDMLAVKTGVAIEQLLYAIQQLYTGFQGKQILGSTMLEDEFTPEDVNMQIMGVVMQ 3248 3553 5WKL 1 306 A0A1L2E0X0 A 1 8 313 1 initiating methionine MET -6 5WKL A A0A1L2E0X0 UNP 1 1 expression tag HIS -5 5WKL A A0A1L2E0X0 UNP 2 1 expression tag HIS -4 5WKL A A0A1L2E0X0 UNP 3 1 expression tag HIS -3 5WKL A A0A1L2E0X0 UNP 4 1 expression tag HIS -2 5WKL A A0A1L2E0X0 UNP 5 1 expression tag HIS -1 5WKL A A0A1L2E0X0 UNP 6 1 expression tag HIS 0 5WKL A A0A1L2E0X0 UNP 7 7 5 3 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel A ASN 77 A ASN 84 A LEU 78 A LEU 85 A PHE 66 A PHE 73 A GLN 69 A GLN 76 A MET 17 A MET 24 A CYS 22 A CYS 29 A MET 25 A MET 32 A LEU 32 A LEU 39 A THR 35 A THR 42 A PRO 39 A PRO 46 A LEU 89 A LEU 96 A VAL 94 A VAL 101 A VAL 80 A VAL 87 A GLN 86 A GLN 93 A TYR 104 A TYR 111 A PHE 106 A PHE 113 A VAL 159 A VAL 166 A GLU 169 A GLU 176 A VAL 151 A VAL 158 A GLU 156 A GLU 163 A ALA 114 A ALA 121 A TYR 121 A TYR 128 A ARG 124 A ARG 131 A VAL 132 A VAL 139 A TYR 104 A TYR 111 A PHE 106 A PHE 113 A VAL 159 A VAL 166 A GLU 169 A GLU 176 A HIS 175 A HIS 182 A SER 178 A SER 185 binding site for residue AVY A 401 A AVY 401 Software 15 binding site for residue B3J A 402 A B3J 402 Software 16 A HIS 41 A HIS 48 15 1_555 A THR 62 A THR 69 15 4_445 A HIS 64 A HIS 71 15 4_445 A PHE 143 A PHE 150 15 1_555 A CYS 145 A CYS 152 15 1_555 A CYS 148 A CYS 155 15 1_555 A HIS 166 A HIS 173 15 1_555 A GLN 167 A GLN 174 15 1_555 A MET 168 A MET 175 15 1_555 A GLU 169 A GLU 176 15 1_555 A HIS 175 A HIS 182 15 1_555 A ASP 190 A ASP 197 15 1_555 A GLN 192 A GLN 199 15 1_555 A B3J 402 C B3J 15 1_555 A HOH 564 D HOH 15 1_555 A THR 62 A THR 69 16 4_445 A HIS 64 A HIS 71 16 4_445 A PHE 143 A PHE 150 16 1_555 A CYS 145 A CYS 152 16 1_555 A GLY 146 A GLY 153 16 1_555 A SER 147 A SER 154 16 1_555 A CYS 148 A CYS 155 16 1_555 A HIS 166 A HIS 173 16 1_555 A GLN 167 A GLN 174 16 1_555 A MET 168 A MET 175 16 1_555 A GLU 169 A GLU 176 16 1_555 A HIS 175 A HIS 182 16 1_555 A ASP 190 A ASP 197 16 1_555 A GLN 192 A GLN 199 16 1_555 A AVY 401 B AVY 16 1_555 A HOH 564 D HOH 16 1_555 5 C 1 2 1