0.012379
0.007147
0.000000
-0.000000
0.014294
0.000000
0.000000
-0.000000
0.015403
0.00000
0.00000
0.00000
Zhang, S.-Q.
Liu, L.
DeGrado, W.F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
120.00
80.782
80.782
64.923
C2 H4 O
44.053
ACETYL GROUP
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
H2 N
16.023
AMINO GROUP
non-polymer
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
US
J. Am. Chem. Soc.
JACSAT
1520-5126
140
1294
1304
10.1021/jacs.7b08261
29249157
De Novo Design of Tetranuclear Transition Metal Clusters Stabilized by Hydrogen-Bonded Networks in Helical Bundles.
2018
100
1
CCD
2015-03-31
ADSC QUANTUM 315r
Double-Mirror
SINGLE WAVELENGTH
M
x-ray
1
1.11587
1.0
8.3.1
ALS
1.11587
SYNCHROTRON
ALS BEAMLINE 8.3.1
3205.660
Helical Bundle 4DH1
4
syn
polymer
65.409
ZINC ION
5
syn
non-polymer
92.094
GLYCEROL
2
syn
non-polymer
18.015
water
74
nat
water
no
yes
(ACE)IEELLRKILEDDARHVAELEDIEKWL(NH2)
XIEELLRKILEDDARHVAELEDIEKWLX
A,B,C,D
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
1
4.81
74.40
VAPOR DIFFUSION, HANGING DROP
7.5
2.0% PEG1000, 1.0 M AmSO4 and 0.1 M HEPES pH 7.5
298
citation
citation
pdbx_audit_support
repository
Initial release
Database references
Database references
Author supporting evidence
1
0
2018-01-03
1
1
2018-01-31
1
2
2018-02-07
1
3
2020-01-01
_citation.year
_citation.journal_volume
_citation.page_first
_citation.page_last
_pdbx_audit_support.funding_organization
United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
GM54616
N
RCSB
Y
RCSB
2017-07-27
REL
REL
ZN
ZINC ION
GOL
GLYCEROL
HOH
water
32630
synthetic construct
sample
1
28
ZN
102
2
ZN
ZN
101
A
ZN
103
2
ZN
ZN
102
A
ZN
101
2
ZN
ZN
103
A
GOL
1
3
GOL
GOL
101
B
GOL
2
3
GOL
GOL
102
B
ZN
102
2
ZN
ZN
101
C
ZN
101
2
ZN
ZN
102
C
HOH
70
4
HOH
HOH
201
A
HOH
14
4
HOH
HOH
202
A
HOH
13
4
HOH
HOH
203
A
HOH
40
4
HOH
HOH
204
A
HOH
2
4
HOH
HOH
205
A
HOH
44
4
HOH
HOH
206
A
HOH
67
4
HOH
HOH
207
A
HOH
3
4
HOH
HOH
208
A
HOH
63
4
HOH
HOH
209
A
HOH
30
4
HOH
HOH
210
A
HOH
22
4
HOH
HOH
211
A
HOH
4
4
HOH
HOH
212
A
HOH
20
4
HOH
HOH
213
A
HOH
6
4
HOH
HOH
214
A
HOH
58
4
HOH
HOH
215
A
HOH
69
4
HOH
HOH
216
A
HOH
38
4
HOH
HOH
217
A
HOH
66
4
HOH
HOH
218
A
HOH
49
4
HOH
HOH
219
A
HOH
50
4
HOH
HOH
220
A
HOH
42
4
HOH
HOH
221
A
HOH
72
4
HOH
HOH
222
A
HOH
47
4
HOH
HOH
223
A
HOH
64
4
HOH
HOH
224
A
HOH
51
4
HOH
HOH
225
A
HOH
9
4
HOH
HOH
201
B
HOH
27
4
HOH
HOH
202
B
HOH
61
4
HOH
HOH
203
B
HOH
25
4
HOH
HOH
204
B
HOH
34
4
HOH
HOH
205
B
HOH
23
4
HOH
HOH
206
B
HOH
1
4
HOH
HOH
207
B
HOH
21
4
HOH
HOH
208
B
HOH
65
4
HOH
HOH
209
B
HOH
37
4
HOH
HOH
210
B
HOH
78
4
HOH
HOH
211
B
HOH
52
4
HOH
HOH
212
B
HOH
53
4
HOH
HOH
213
B
HOH
24
4
HOH
HOH
214
B
HOH
35
4
HOH
HOH
215
B
HOH
7
4
HOH
HOH
201
C
HOH
75
4
HOH
HOH
202
C
HOH
10
4
HOH
HOH
203
C
HOH
60
4
HOH
HOH
204
C
HOH
26
4
HOH
HOH
205
C
HOH
71
4
HOH
HOH
206
C
HOH
56
4
HOH
HOH
207
C
HOH
36
4
HOH
HOH
208
C
HOH
19
4
HOH
HOH
209
C
HOH
18
4
HOH
HOH
210
C
HOH
11
4
HOH
HOH
211
C
HOH
5
4
HOH
HOH
212
C
HOH
46
4
HOH
HOH
213
C
HOH
48
4
HOH
HOH
214
C
HOH
74
4
HOH
HOH
215
C
HOH
43
4
HOH
HOH
216
C
HOH
15
4
HOH
HOH
217
C
HOH
39
4
HOH
HOH
218
C
HOH
62
4
HOH
HOH
201
D
HOH
17
4
HOH
HOH
202
D
HOH
8
4
HOH
HOH
203
D
HOH
76
4
HOH
HOH
204
D
HOH
59
4
HOH
HOH
205
D
HOH
16
4
HOH
HOH
206
D
HOH
55
4
HOH
HOH
207
D
HOH
29
4
HOH
HOH
208
D
HOH
12
4
HOH
HOH
209
D
HOH
31
4
HOH
HOH
210
D
HOH
77
4
HOH
HOH
211
D
HOH
73
4
HOH
HOH
212
D
HOH
41
4
HOH
HOH
213
D
HOH
54
4
HOH
HOH
214
D
HOH
33
4
HOH
HOH
215
D
HOH
32
4
HOH
HOH
216
D
ACE
0
n
1
ACE
0
A
ILE
1
n
2
ILE
1
A
GLU
2
n
3
GLU
2
A
GLU
3
n
4
GLU
3
A
LEU
4
n
5
LEU
4
A
LEU
5
n
6
LEU
5
A
ARG
6
n
7
ARG
6
A
LYS
7
n
8
LYS
7
A
ILE
8
n
9
ILE
8
A
LEU
9
n
10
LEU
9
A
GLU
10
n
11
GLU
10
A
ASP
11
n
12
ASP
11
A
ASP
12
n
13
ASP
12
A
ALA
13
n
14
ALA
13
A
ARG
14
n
15
ARG
14
A
HIS
15
n
16
HIS
15
A
VAL
16
n
17
VAL
16
A
ALA
17
n
18
ALA
17
A
GLU
18
n
19
GLU
18
A
LEU
19
n
20
LEU
19
A
GLU
20
n
21
GLU
20
A
ASP
21
n
22
ASP
21
A
ILE
22
n
23
ILE
22
A
GLU
23
n
24
GLU
23
A
LYS
24
n
25
LYS
24
A
TRP
25
n
26
TRP
25
A
LEU
26
n
27
LEU
26
A
NH2
27
n
28
NH2
27
A
ACE
0
n
1
ACE
0
B
ILE
1
n
2
ILE
1
B
GLU
2
n
3
GLU
2
B
GLU
3
n
4
GLU
3
B
LEU
4
n
5
LEU
4
B
LEU
5
n
6
LEU
5
B
ARG
6
n
7
ARG
6
B
LYS
7
n
8
LYS
7
B
ILE
8
n
9
ILE
8
B
LEU
9
n
10
LEU
9
B
GLU
10
n
11
GLU
10
B
ASP
11
n
12
ASP
11
B
ASP
12
n
13
ASP
12
B
ALA
13
n
14
ALA
13
B
ARG
14
n
15
ARG
14
B
HIS
15
n
16
HIS
15
B
VAL
16
n
17
VAL
16
B
ALA
17
n
18
ALA
17
B
GLU
18
n
19
GLU
18
B
LEU
19
n
20
LEU
19
B
GLU
20
n
21
GLU
20
B
ASP
21
n
22
ASP
21
B
ILE
22
n
23
ILE
22
B
GLU
23
n
24
GLU
23
B
LYS
24
n
25
LYS
24
B
TRP
25
n
26
TRP
25
B
LEU
26
n
27
LEU
26
B
NH2
27
n
28
NH2
27
B
ACE
0
n
1
ACE
0
C
ILE
1
n
2
ILE
1
C
GLU
2
n
3
GLU
2
C
GLU
3
n
4
GLU
3
C
LEU
4
n
5
LEU
4
C
LEU
5
n
6
LEU
5
C
ARG
6
n
7
ARG
6
C
LYS
7
n
8
LYS
7
C
ILE
8
n
9
ILE
8
C
LEU
9
n
10
LEU
9
C
GLU
10
n
11
GLU
10
C
ASP
11
n
12
ASP
11
C
ASP
12
n
13
ASP
12
C
ALA
13
n
14
ALA
13
C
ARG
14
n
15
ARG
14
C
HIS
15
n
16
HIS
15
C
VAL
16
n
17
VAL
16
C
ALA
17
n
18
ALA
17
C
GLU
18
n
19
GLU
18
C
LEU
19
n
20
LEU
19
C
GLU
20
n
21
GLU
20
C
ASP
21
n
22
ASP
21
C
ILE
22
n
23
ILE
22
C
GLU
23
n
24
GLU
23
C
LYS
24
n
25
LYS
24
C
TRP
25
n
26
TRP
25
C
LEU
26
n
27
LEU
26
C
NH2
27
n
28
NH2
27
C
ACE
0
n
1
ACE
0
D
ILE
1
n
2
ILE
1
D
GLU
2
n
3
GLU
2
D
GLU
3
n
4
GLU
3
D
LEU
4
n
5
LEU
4
D
LEU
5
n
6
LEU
5
D
ARG
6
n
7
ARG
6
D
LYS
7
n
8
LYS
7
D
ILE
8
n
9
ILE
8
D
LEU
9
n
10
LEU
9
D
GLU
10
n
11
GLU
10
D
ASP
11
n
12
ASP
11
D
ASP
12
n
13
ASP
12
D
ALA
13
n
14
ALA
13
D
ARG
14
n
15
ARG
14
D
HIS
15
n
16
HIS
15
D
VAL
16
n
17
VAL
16
D
ALA
17
n
18
ALA
17
D
GLU
18
n
19
GLU
18
D
LEU
19
n
20
LEU
19
D
GLU
20
n
21
GLU
20
D
ASP
21
n
22
ASP
21
D
ILE
22
n
23
ILE
22
D
GLU
23
n
24
GLU
23
D
LYS
24
n
25
LYS
24
D
TRP
25
n
26
TRP
25
D
LEU
26
n
27
LEU
26
D
NH2
27
n
28
NH2
27
D
3.7322
-5.1548
2.0068
9.7322
-3.3156
2.0258
-0.0780
-0.0828
-0.1234
0.2884
0.1475
0.1068
-0.0458
0.0983
-0.0694
0.0155
0.0101
-0.0025
0.0291
-0.0010
0.0060
refined
-4.5210
-4.2550
8.2680
X-RAY DIFFRACTION
1.7475
-2.2910
-0.6114
8.7414
1.1401
1.6410
-0.0334
-0.0106
0.0863
-0.1292
0.1148
-0.1883
-0.0090
-0.0055
-0.0813
0.0089
0.0065
0.0003
0.0309
-0.0033
0.0069
refined
3.5240
-2.1710
4.6490
X-RAY DIFFRACTION
0.9112
-2.0227
-0.0943
7.0034
0.0640
0.0624
0.0605
-0.0035
0.0224
-0.2100
-0.0584
-0.1076
-0.0116
-0.0525
-0.0021
0.1001
0.0371
0.0056
0.0801
0.0062
0.0503
refined
-17.1560
35.0290
4.9260
X-RAY DIFFRACTION
8.5942
-8.9347
-2.5328
12.2222
3.1864
1.5514
-0.1373
-0.2660
0.5059
-0.1030
0.3504
-0.6512
-0.0717
0.0984
-0.2132
0.1088
0.0333
0.0024
0.0277
-0.0126
0.0813
refined
-12.9750
35.1810
12.3080
X-RAY DIFFRACTION
A
0
A
27
X-RAY DIFFRACTION
1
B
0
B
27
X-RAY DIFFRACTION
2
C
0
C
27
X-RAY DIFFRACTION
3
D
0
D
27
X-RAY DIFFRACTION
4
author_and_software_defined_assembly
PISA
4
tetrameric
author_and_software_defined_assembly
PISA
4
tetrameric
A-B chains paired with its closest symmetry-related equivalent A*-B* to form a 4-helix bundle; so do C-D in the same way.
equilibrium centrifugation
7440
-290
6450
6550
-256
6240
A
ASP
12
A
OD1
ASP
13
1_555
A
ZN
101
E
ZN
ZN
1_555
A
HIS
15
A
ND1
HIS
16
1_555
108.2
A
ASP
12
A
OD1
ASP
13
1_555
A
ZN
101
E
ZN
ZN
1_555
B
ASP
12
B
OD2
ASP
13
1_555
93.2
A
HIS
15
A
ND1
HIS
16
1_555
A
ZN
101
E
ZN
ZN
1_555
B
ASP
12
B
OD2
ASP
13
1_555
100.1
A
ASP
12
A
OD1
ASP
13
1_555
A
ZN
101
E
ZN
ZN
1_555
B
HOH
203
M
O
HOH
1_555
143.3
A
HIS
15
A
ND1
HIS
16
1_555
A
ZN
101
E
ZN
ZN
1_555
B
HOH
203
M
O
HOH
1_555
108.1
B
ASP
12
B
OD2
ASP
13
1_555
A
ZN
101
E
ZN
ZN
1_555
B
HOH
203
M
O
HOH
1_555
74.8
A
ASP
12
A
OD1
ASP
13
1_555
A
ZN
101
E
ZN
ZN
1_555
B
HOH
203
M
O
HOH
6_555
143.2
A
HIS
15
A
ND1
HIS
16
1_555
A
ZN
101
E
ZN
ZN
1_555
B
HOH
203
M
O
HOH
6_555
108.1
B
ASP
12
B
OD2
ASP
13
1_555
A
ZN
101
E
ZN
ZN
1_555
B
HOH
203
M
O
HOH
6_555
74.9
B
HOH
203
M
O
HOH
1_555
A
ZN
101
E
ZN
ZN
1_555
B
HOH
203
M
O
HOH
6_555
0.0
A
ASP
12
A
OD1
ASP
13
1_555
A
ZN
103
G
ZN
ZN
1_555
B
ASP
12
B
OD1
ASP
13
1_555
95.6
A
ASP
12
A
OD1
ASP
13
1_555
A
ZN
103
G
ZN
ZN
1_555
B
HIS
15
B
ND1
HIS
16
1_555
143.0
B
ASP
12
B
OD1
ASP
13
1_555
A
ZN
103
G
ZN
ZN
1_555
B
HIS
15
B
ND1
HIS
16
1_555
103.3
A
ASP
12
A
OD1
ASP
13
1_555
A
ZN
103
G
ZN
ZN
1_555
A
HOH
209
L
O
HOH
1_555
68.5
B
ASP
12
B
OD1
ASP
13
1_555
A
ZN
103
G
ZN
ZN
1_555
A
HOH
209
L
O
HOH
1_555
155.4
B
HIS
15
B
ND1
HIS
16
1_555
A
ZN
103
G
ZN
ZN
1_555
A
HOH
209
L
O
HOH
1_555
100.4
A
ASP
12
A
OD1
ASP
13
1_555
A
ZN
103
G
ZN
ZN
1_555
A
HOH
209
L
O
HOH
6_555
68.5
B
ASP
12
B
OD1
ASP
13
1_555
A
ZN
103
G
ZN
ZN
1_555
A
HOH
209
L
O
HOH
6_555
155.4
B
HIS
15
B
ND1
HIS
16
1_555
A
ZN
103
G
ZN
ZN
1_555
A
HOH
209
L
O
HOH
6_555
100.4
A
HOH
209
L
O
HOH
1_555
A
ZN
103
G
ZN
ZN
1_555
A
HOH
209
L
O
HOH
6_555
0.0
A
GLU
20
A
OE1
GLU
21
1_555
A
ZN
102
F
ZN
ZN
1_555
A
ASP
21
A
OD1
ASP
22
1_555
104.9
A
GLU
20
A
OE1
GLU
21
1_555
A
ZN
102
F
ZN
ZN
1_555
A
HOH
213
L
O
HOH
1_555
96.4
A
ASP
21
A
OD1
ASP
22
1_555
A
ZN
102
F
ZN
ZN
1_555
A
HOH
213
L
O
HOH
1_555
111.3
A
GLU
20
A
OE1
GLU
21
1_555
A
ZN
102
F
ZN
ZN
1_555
B
ASP
21
B
OD2
ASP
22
1_555
48.7
A
ASP
21
A
OD1
ASP
22
1_555
A
ZN
102
F
ZN
ZN
1_555
B
ASP
21
B
OD2
ASP
22
1_555
130.0
A
HOH
213
L
O
HOH
1_555
A
ZN
102
F
ZN
ZN
1_555
B
ASP
21
B
OD2
ASP
22
1_555
50.1
C
ASP
12
C
OD1
ASP
13
1_555
C
ZN
101
J
ZN
ZN
1_555
C
HIS
15
C
ND1
HIS
16
1_555
103.5
C
ASP
12
C
OD1
ASP
13
1_555
C
ZN
101
J
ZN
ZN
1_555
D
ASP
12
D
OD2
ASP
13
1_555
112.6
C
HIS
15
C
ND1
HIS
16
1_555
C
ZN
101
J
ZN
ZN
1_555
D
ASP
12
D
OD2
ASP
13
1_555
97.6
C
ASP
12
C
OD1
ASP
13
1_555
C
ZN
101
J
ZN
ZN
1_555
D
HOH
201
O
O
HOH
1_555
151.8
C
HIS
15
C
ND1
HIS
16
1_555
C
ZN
101
J
ZN
ZN
1_555
D
HOH
201
O
O
HOH
1_555
104.5
D
ASP
12
D
OD2
ASP
13
1_555
C
ZN
101
J
ZN
ZN
1_555
D
HOH
201
O
O
HOH
1_555
66.6
C
ASP
12
C
OD1
ASP
13
1_555
C
ZN
101
J
ZN
ZN
1_555
D
HOH
201
O
O
HOH
6_555
151.8
C
HIS
15
C
ND1
HIS
16
1_555
C
ZN
101
J
ZN
ZN
1_555
D
HOH
201
O
O
HOH
6_555
104.5
D
ASP
12
D
OD2
ASP
13
1_555
C
ZN
101
J
ZN
ZN
1_555
D
HOH
201
O
O
HOH
6_555
66.6
D
HOH
201
O
O
HOH
1_555
C
ZN
101
J
ZN
ZN
1_555
D
HOH
201
O
O
HOH
6_555
0.1
C
ASP
12
C
OD2
ASP
13
1_555
C
ZN
102
K
ZN
ZN
1_555
D
ASP
12
D
OD1
ASP
13
1_555
118.8
C
ASP
12
C
OD2
ASP
13
1_555
C
ZN
102
K
ZN
ZN
1_555
D
HIS
15
D
ND1
HIS
16
1_555
105.1
D
ASP
12
D
OD1
ASP
13
1_555
C
ZN
102
K
ZN
ZN
1_555
D
HIS
15
D
ND1
HIS
16
1_555
103.7
C
ASP
12
C
OD2
ASP
13
1_555
C
ZN
102
K
ZN
ZN
1_555
C
HOH
204
N
O
HOH
1_555
73.1
D
ASP
12
D
OD1
ASP
13
1_555
C
ZN
102
K
ZN
ZN
1_555
C
HOH
204
N
O
HOH
1_555
140.2
D
HIS
15
D
ND1
HIS
16
1_555
C
ZN
102
K
ZN
ZN
1_555
C
HOH
204
N
O
HOH
1_555
109.3
C
ASP
12
C
OD2
ASP
13
1_555
C
ZN
102
K
ZN
ZN
1_555
C
HOH
204
N
O
HOH
6_555
73.2
D
ASP
12
D
OD1
ASP
13
1_555
C
ZN
102
K
ZN
ZN
1_555
C
HOH
204
N
O
HOH
6_555
140.2
D
HIS
15
D
ND1
HIS
16
1_555
C
ZN
102
K
ZN
ZN
1_555
C
HOH
204
N
O
HOH
6_555
109.3
C
HOH
204
N
O
HOH
1_555
C
ZN
102
K
ZN
ZN
1_555
C
HOH
204
N
O
HOH
6_555
0.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
6_555
-x,-x+y,-z+1/3
crystal symmetry operation
0.0000000000
0.0000000000
21.6410000000
1
A
HOH
209
L
HOH
1
B
HOH
203
M
HOH
1
C
HOH
204
N
HOH
1
D
HOH
201
O
HOH
25.171
-0.71
-0.35
-0.00
-0.71
0.00
2.30
0.931
0.918
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.23778
0.21942
0.22035
1.90
70.01
809
15869
4.9
84.71
7.953
0.107
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.132
0.123
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
1.90
70.01
74
999
17
0
908
0.009
0.019
958
0.002
0.020
961
1.162
2.009
1290
0.893
3.000
2203
4.208
5.000
106
36.505
23.390
59
15.707
15.000
199
16.792
15.000
10
0.061
0.200
145
0.003
0.020
1017
0.001
0.020
185
0.328
1.666
430
0.328
1.665
427
0.548
2.495
533
0.548
2.495
533
0.360
1.797
528
0.345
1.798
528
0.593
2.658
755
3.086
31.048
3643
3.085
31.042
3643
0.514
0.305
1.949
19
387
20
28.16
1.90
70.01
5WLL
19614
0.097
1
11.8
10.4
99.2
0.844
1.90
2.02
2.2
3086
1
10.0
96.2
refinement
REFMAC
5.8.0158
data reduction
HKL-2000
data scaling
SCALEPACK
phasing
PHASER
N
Helical Bundle 4DH1
De Novo Design of Polynuclear Transition Metal Clusters in Helix Bundles-4DH1
1
N
N
1
N
N
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
2
N
N
2
N
N
4
N
N
4
N
N
4
N
N
4
N
N
A
ILE
1
A
ILE
2
HELX_P
A
LEU
26
A
LEU
27
1
AA1
26
B
ILE
1
B
ILE
2
HELX_P
B
LEU
26
B
LEU
27
1
AA2
26
C
ILE
1
C
ILE
2
HELX_P
C
LEU
26
C
LEU
27
1
AA3
26
D
ILE
1
D
ILE
2
HELX_P
D
LEU
26
D
LEU
27
1
AA4
26
covale
1.328
both
A
ACE
0
A
C
ACE
1
1_555
A
ILE
1
A
N
ILE
2
1_555
metalc
2.539
A
ASP
12
A
OD1
ASP
13
1_555
A
ZN
101
E
ZN
ZN
1_555
metalc
2.654
A
ASP
12
A
OD1
ASP
13
1_555
A
ZN
103
G
ZN
ZN
1_555
metalc
2.111
A
HIS
15
A
ND1
HIS
16
1_555
A
ZN
101
E
ZN
ZN
1_555
metalc
1.964
A
GLU
20
A
OE1
GLU
21
1_555
A
ZN
102
F
ZN
ZN
1_555
metalc
1.909
A
ASP
21
A
OD1
ASP
22
1_555
A
ZN
102
F
ZN
ZN
1_555
covale
1.346
both
A
LEU
26
A
C
LEU
27
1_555
A
NH2
27
A
N
NH2
28
1_555
covale
1.339
both
B
ACE
0
B
C
ACE
1
1_555
B
ILE
1
B
N
ILE
2
1_555
metalc
2.307
B
ASP
12
B
OD1
ASP
13
1_555
A
ZN
103
G
ZN
ZN
1_555
metalc
2.246
B
ASP
12
B
OD2
ASP
13
1_555
A
ZN
101
E
ZN
ZN
1_555
metalc
2.153
B
HIS
15
B
ND1
HIS
16
1_555
A
ZN
103
G
ZN
ZN
1_555
covale
1.352
both
B
LEU
26
B
C
LEU
27
1_555
B
NH2
27
B
N
NH2
28
1_555
covale
1.336
both
C
ACE
0
C
C
ACE
1
1_555
C
ILE
1
C
N
ILE
2
1_555
metalc
2.280
C
ASP
12
C
OD1
ASP
13
1_555
C
ZN
101
J
ZN
ZN
1_555
metalc
2.481
C
ASP
12
C
OD2
ASP
13
1_555
C
ZN
102
K
ZN
ZN
1_555
metalc
2.148
C
HIS
15
C
ND1
HIS
16
1_555
C
ZN
101
J
ZN
ZN
1_555
covale
1.357
both
C
LEU
26
C
C
LEU
27
1_555
C
NH2
27
C
N
NH2
28
1_555
covale
1.334
both
D
ACE
0
D
C
ACE
1
1_555
D
ILE
1
D
N
ILE
2
1_555
metalc
2.409
D
ASP
12
D
OD1
ASP
13
1_555
C
ZN
102
K
ZN
ZN
1_555
metalc
2.467
D
ASP
12
D
OD2
ASP
13
1_555
C
ZN
101
J
ZN
ZN
1_555
metalc
2.108
D
HIS
15
D
ND1
HIS
16
1_555
C
ZN
102
K
ZN
ZN
1_555
covale
1.334
both
D
LEU
26
D
C
LEU
27
1_555
D
NH2
27
D
N
NH2
28
1_555
metalc
2.066
A
ZN
101
E
ZN
ZN
1_555
B
HOH
203
M
O
HOH
1_555
metalc
1.919
A
ZN
102
F
ZN
ZN
1_555
A
HOH
213
L
O
HOH
1_555
metalc
2.333
A
ZN
103
G
ZN
ZN
1_555
A
HOH
209
L
O
HOH
1_555
metalc
2.121
C
ZN
101
J
ZN
ZN
1_555
D
HOH
201
O
O
HOH
1_555
metalc
1.951
C
ZN
102
K
ZN
ZN
1_555
C
HOH
204
N
O
HOH
1_555
metalc
1.815
B
ASP
21
B
OD2
ASP
22
1_555
A
ZN
102
F
ZN
ZN
4_555
metalc
2.067
A
ZN
101
E
ZN
ZN
1_555
B
HOH
203
M
O
HOH
6_555
metalc
2.334
A
ZN
103
G
ZN
ZN
1_555
A
HOH
209
L
O
HOH
6_555
metalc
2.122
C
ZN
101
J
ZN
ZN
1_555
D
HOH
201
O
O
HOH
6_555
metalc
1.952
C
ZN
102
K
ZN
ZN
1_555
C
HOH
204
N
O
HOH
6_555
DE NOVO PROTEIN
Protein Design, Helical Bundle, Metal Binding, DE NOVO PROTEIN
5WLL
PDB
1
1
5WLL
0
27
5WLL
0
27
5WLL
A
1
1
28
0
27
5WLL
0
27
5WLL
B
1
1
28
0
27
5WLL
0
27
5WLL
C
1
1
28
0
27
5WLL
0
27
5WLL
D
1
1
28
binding site for residue ZN A 101
A
ZN
101
Software
8
binding site for residue ZN A 102
A
ZN
102
Software
4
binding site for residue ZN A 103
A
ZN
103
Software
8
binding site for residue GOL B 101
B
GOL
101
Software
1
binding site for residue GOL B 102
B
GOL
102
Software
6
binding site for residue ZN C 101
C
ZN
101
Software
8
binding site for residue ZN C 102
C
ZN
102
Software
8
binding site for Di-peptide ACE B 0 and ILE B 1
B
ACE
0
Software
7
binding site for Di-peptide LEU B 26 and NH2 B 27
B
LEU
26
Software
8
binding site for Di-peptide ACE C 0 and ILE C 1
C
ACE
0
Software
9
binding site for Di-peptide LEU C 26 and NH2 C 27
C
LEU
26
Software
7
binding site for Di-peptide ACE D 0 and ILE D 1
D
ACE
0
Software
7
binding site for Di-peptide LEU D 26 and NH2 D 27
D
LEU
26
Software
7
A
ASP
12
A
ASP
13
8
1_555
A
HIS
15
A
HIS
16
8
1_555
A
ZN
103
G
ZN
8
1_555
A
ZN
103
G
ZN
8
6_555
B
ASP
12
B
ASP
13
8
6_555
B
ASP
12
B
ASP
13
8
1_555
B
HOH
203
M
HOH
8
6_555
B
HOH
203
M
HOH
8
1_555
A
GLU
20
A
GLU
21
4
1_555
A
ASP
21
A
ASP
22
4
1_555
A
HOH
213
L
HOH
4
1_555
B
ASP
21
B
ASP
22
4
4_555
A
ASP
12
A
ASP
13
8
1_555
A
ASP
12
A
ASP
13
8
6_555
A
ZN
101
E
ZN
8
6_555
A
ZN
101
E
ZN
8
1_555
A
HOH
209
L
HOH
8
6_555
A
HOH
209
L
HOH
8
1_555
B
ASP
12
B
ASP
13
8
1_555
B
HIS
15
B
HIS
16
8
1_555
C
TRP
25
C
TRP
26
1
1_545
A
LYS
7
A
LYS
8
6
6_555
A
ASP
11
A
ASP
12
6
6_555
A
LYS
24
A
LYS
25
6
4_555
B
ARG
14
B
ARG
15
6
1_555
B
HIS
15
B
HIS
16
6
1_555
B
GLU
18
B
GLU
19
6
1_555
C
ASP
12
C
ASP
13
8
1_555
C
HIS
15
C
HIS
16
8
1_555
C
ZN
102
K
ZN
8
1_555
C
ZN
102
K
ZN
8
6_555
D
ASP
12
D
ASP
13
8
6_555
D
ASP
12
D
ASP
13
8
1_555
D
HOH
201
O
HOH
8
6_555
D
HOH
201
O
HOH
8
1_555
C
ASP
12
C
ASP
13
8
1_555
C
ASP
12
C
ASP
13
8
6_555
C
ZN
101
J
ZN
8
1_555
C
ZN
101
J
ZN
8
6_555
C
HOH
204
N
HOH
8
6_555
C
HOH
204
N
HOH
8
1_555
D
ASP
12
D
ASP
13
8
1_555
D
HIS
15
D
HIS
16
8
1_555
B
GLU
2
B
GLU
3
7
1_555
B
GLU
3
B
GLU
4
7
1_555
B
LEU
4
B
LEU
5
7
1_555
B
LEU
5
B
LEU
6
7
1_555
B
HOH
205
M
HOH
7
1_555
D
TRP
25
D
TRP
26
7
1_555
D
LEU
26
D
LEU
27
7
1_555
A
GLU
2
A
GLU
3
8
1_555
A
LEU
5
A
LEU
6
8
1_555
B
ILE
22
B
ILE
23
8
1_555
B
GLU
23
B
GLU
24
8
1_555
B
LYS
24
B
LYS
25
8
1_555
B
TRP
25
B
TRP
26
8
1_555
D
ILE
1
D
ILE
2
8
6_545
D
GLU
2
D
GLU
3
8
6_545
A
LYS
24
A
LYS
25
9
1_555
A
TRP
25
A
TRP
26
9
1_555
A
LEU
26
A
LEU
27
9
1_555
C
GLU
2
C
GLU
3
9
1_555
C
GLU
3
C
GLU
4
9
1_555
C
LEU
4
C
LEU
5
9
1_555
C
LEU
5
C
LEU
6
9
1_555
C
HOH
209
N
HOH
9
1_555
D
LEU
26
D
LEU
27
9
6_555
A
ILE
1
A
ILE
2
7
6_565
A
GLU
2
A
GLU
3
7
6_565
C
ILE
22
C
ILE
23
7
1_555
C
GLU
23
C
GLU
24
7
1_555
C
LYS
24
C
LYS
25
7
1_555
C
TRP
25
C
TRP
26
7
1_555
C
HOH
212
N
HOH
7
1_555
B
TRP
25
B
TRP
26
7
6_565
B
LEU
26
B
LEU
27
7
6_565
D
GLU
2
D
GLU
3
7
1_555
D
GLU
3
D
GLU
4
7
1_555
D
LEU
4
D
LEU
5
7
1_555
D
LEU
5
D
LEU
6
7
1_555
D
HOH
205
O
HOH
7
1_555
B
ILE
1
B
ILE
2
7
1_555
B
GLU
2
B
GLU
3
7
1_555
C
ILE
1
C
ILE
2
7
6_555
D
ILE
22
D
ILE
23
7
1_555
D
GLU
23
D
GLU
24
7
1_555
D
LYS
24
D
LYS
25
7
1_555
D
TRP
25
D
TRP
26
7
1_555
152
P 31 2 1