0.017101
0.000000
0.000000
0.000000
0.011623
0.000000
0.000000
0.000000
0.021797
0.000000
0.000000
0.000000
Wang, Y.-F.
Agniswamy, J.
Weber, I.T.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
58.475
86.034
45.877
C2 H3 O2 -1
59.044
ACETATE ION
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C32 H42 N2 O9 S
630.749
(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(2S,3R)-3-hydroxy-4-[(7E)-13-methoxy-1,1-dioxo-1,4,5,6,9,11-hexahydro-10,1lambda~6~,2-benzoxathiazacyclotridecin-2(3H)-yl]-1-phenylbutan-2-yl}carbamate
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
O
N
4
N
C
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
N
N
9
S
C
N
10
N
C
N
11
N
O
N
12
N
C
N
13
N
O
N
14
N
H
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
N
N
22
S
C
N
23
N
C
N
24
N
O
N
25
N
C
N
26
N
C
N
27
N
C
N
28
N
N
N
29
N
C
N
30
N
N
N
31
N
N
N
32
N
O
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
N
N
49
S
C
N
50
N
C
N
51
N
O
N
52
N
C
N
53
N
C
N
54
N
O
N
55
N
N
N
56
N
O
N
57
N
H
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
N
N
66
S
C
N
67
N
C
N
68
N
O
N
69
N
C
N
70
N
C
N
71
N
O
N
72
N
O
N
73
N
O
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
CL
N
82
N
N
N
83
R
C
N
84
N
C
N
85
N
O
N
86
N
C
N
87
N
S
N
88
N
O
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
S
C
N
98
N
C
N
99
N
O
N
100
N
C
N
101
N
C
N
102
N
C
N
103
N
O
N
104
N
N
N
105
N
O
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
S
C
N
118
N
C
N
119
N
O
N
120
N
C
N
121
N
C
N
122
N
C
N
123
N
O
N
124
N
O
N
125
N
O
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
N
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
C
N
146
N
O
N
147
N
C
N
148
N
O
N
149
N
C
N
150
N
O
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
Y
159
N
C
Y
160
N
C
Y
161
N
C
Y
162
N
C
Y
163
N
C
Y
164
N
C
N
165
N
S
N
166
N
O
N
167
N
O
N
168
N
N
N
169
N
C
N
170
R
C
N
171
N
O
N
172
S
C
N
173
N
N
N
174
N
C
N
175
N
O
N
176
N
O
N
177
R
C
N
178
N
C
N
179
N
O
N
180
R
C
N
181
N
O
N
182
N
C
N
183
N
C
N
184
S
C
N
185
N
C
Y
186
N
C
Y
187
N
C
Y
188
N
C
Y
189
N
C
Y
190
N
C
Y
191
N
C
N
192
N
O
N
193
N
C
N
194
N
C
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
O
N
200
N
C
N
201
N
C
N
202
N
C
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
N
N
246
S
C
N
247
N
C
N
248
N
O
N
249
N
C
Y
250
N
C
Y
251
N
N
Y
252
N
C
Y
253
N
C
Y
254
N
N
N
255
N
O
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
N
N
270
S
C
N
271
N
C
N
272
N
O
N
273
S
C
N
274
N
C
N
275
N
C
N
276
N
C
N
277
N
O
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
C
N
297
N
C
N
298
N
C
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
N
N
314
S
C
N
315
N
C
N
316
N
O
N
317
N
C
N
318
N
C
N
319
N
C
N
320
N
C
N
321
N
N
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
N
343
N
C
N
344
N
S
N
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
NA
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
N
N
383
S
C
N
384
N
C
N
385
N
O
N
386
N
C
N
387
N
C
N
388
N
C
N
389
N
O
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
N
N
400
S
C
N
401
N
C
N
402
N
O
N
403
N
C
N
404
N
O
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
N
N
414
S
C
N
415
N
C
N
416
N
O
N
417
R
C
N
418
N
O
N
419
N
C
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
N
N
431
S
C
N
432
N
C
N
433
N
O
N
434
N
C
Y
435
N
C
Y
436
N
C
Y
437
N
C
Y
438
N
N
Y
439
N
C
Y
440
N
C
Y
441
N
C
Y
442
N
C
Y
443
N
C
N
444
N
O
N
445
N
H
N
446
N
H
N
447
N
H
N
448
N
H
N
449
N
H
N
450
N
H
N
451
N
H
N
452
N
H
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
N
N
458
S
C
N
459
N
C
N
460
N
O
N
461
N
C
Y
462
N
C
Y
463
N
C
Y
464
N
C
Y
465
N
C
Y
466
N
C
Y
467
N
C
N
468
N
O
N
469
N
O
N
470
N
H
N
471
N
H
N
472
N
H
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
N
N
482
S
C
N
483
N
C
N
484
N
O
N
485
N
C
N
486
N
C
N
487
N
C
N
488
N
O
N
489
N
H
N
490
N
H
N
491
N
H
N
492
N
H
N
493
N
H
N
494
N
H
N
495
N
H
N
496
N
H
N
497
N
H
N
498
N
H
N
499
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
doub
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
doub
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
doub
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
doub
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
doub
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
doub
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
doub
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
doub
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
Y
148
N
doub
Y
149
N
sing
Y
150
N
sing
Y
151
N
doub
Y
152
N
doub
N
153
N
sing
N
154
N
sing
Y
155
N
doub
Y
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
Y
160
N
doub
N
161
N
doub
N
162
N
sing
Y
163
N
doub
Y
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
doub
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
E
doub
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
Y
249
N
sing
Y
250
N
doub
Y
251
N
doub
N
252
N
sing
Y
253
N
sing
N
254
N
sing
Y
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
doub
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
doub
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
doub
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
Y
357
N
doub
Y
358
N
sing
Y
359
N
sing
N
360
N
sing
Y
361
N
doub
N
362
N
sing
Y
363
N
doub
N
364
N
sing
Y
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
doub
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
doub
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
sing
N
405
N
doub
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
doub
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
Y
426
N
doub
Y
427
N
sing
Y
428
N
sing
N
429
N
sing
Y
430
N
doub
Y
431
N
sing
Y
432
N
sing
N
433
N
sing
Y
434
N
sing
Y
435
N
doub
N
436
N
sing
Y
437
N
doub
N
438
N
sing
Y
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
doub
N
450
N
sing
N
451
N
sing
N
452
N
sing
N
453
N
sing
Y
454
N
doub
Y
455
N
sing
Y
456
N
sing
N
457
N
sing
Y
458
N
doub
N
459
N
sing
Y
460
N
doub
N
461
N
sing
Y
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
doub
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
sing
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
N
482
N
sing
N
483
N
sing
N
484
N
sing
UK
Bioorg. Med. Chem. Lett.
BMCLE8
1127
1464-3405
27
4925
4931
10.1016/j.bmcl.2017.09.003
28958624
Design, synthesis, X-ray studies, and biological evaluation of novel macrocyclic HIV-1 protease inhibitors involving the P1'-P2' ligands.
2017
10.2210/pdb5wlo/pdb
pdb_00005wlo
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
100
1
CCD
2017-06-28
MARMOSAIC 225 mm CCD
SINGLE WAVELENGTH
M
x-ray
1
1
1.0
22-BM
APS
1
SYNCHROTRON
APS BEAMLINE 22-BM
10740.677
Protease
Q7K, L33I, L63I, C67A, C95A
2
man
polymer
22.990
SODIUM ION
1
syn
non-polymer
35.453
CHLORIDE ION
5
syn
non-polymer
630.749
(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(2S,3R)-3-hydroxy-4-[(7E)-13-methoxy-1,1-dioxo-1,4,5,6,9,11-hexahydro-10,1lambda~6~,2-benzoxathiazacyclotridecin-2(3H)-yl]-1-phenylbutan-2-yl}carbamate
1
syn
non-polymer
92.094
GLYCEROL
1
syn
non-polymer
59.044
ACETATE ION
1
syn
non-polymer
18.015
water
191
nat
water
no
no
PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT
PVNIIGRNLLTQIGATLNF
PQITLWKRPLVTIKIGGQLKEALLDTGADDTVIEEMSLPGRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVGPT
PVNIIGRNLLTQIGATLNF
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
sample
1
99
pol
11676
Human immunodeficiency virus 1
562
Escherichia coli
Bl21 (de3)
Plasmid
Biological sequence
pET11a
1
2.69
54.21
VAPOR DIFFUSION, HANGING DROP
4.4
1.25 M NaCl, 0.1 M Acetate, pH 4.4
4.4
298
pdbx_audit_support
citation
pdbx_audit_support
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
repository
Initial release
Author supporting evidence
Database references
Author supporting evidence
Data collection
Database references
Derived calculations
Refinement description
1
0
2017-10-11
1
1
2017-10-18
1
2
2017-10-25
1
3
2019-12-04
1
4
2023-10-04
_citation.journal_volume
_citation.page_first
_citation.page_last
_pdbx_audit_support.funding_organization
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr2_auth_seq_id
United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
GM53386
United States
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)
GM62920
United States
National Institutes of Health/National Cancer Institute (NIH/NCI)
Japan
Ministry of Education, Culture, Sports, Science and Technology (Japan)
a Grant-in-Aid for Scientific Research (Priority Areas)
Japan
Ministry of Health,Labour and Welfare (Japan)
a Grant for Promotion of AIDS Research
Japan
Ministry of Education, Culture, Sports, Science and Technology (Japan)
the Grant to the Cooperative Research Project on Clinical and Epidemiological Studies of Emerging and Reemerging Infectious Diseases (Renkei Jigyo)
United States
National Institutes of Health/National Center for Research Resources (NIH/NCRR)
N
RCSB
Y
RCSB
2017-07-27
REL
REL
1
A
O
HOH
692
6.54
GR7
GR7
SUBJECT OF INVESTIGATION
NA
SODIUM ION
CL
CHLORIDE ION
GR7
(3R,3aS,6aR)-hexahydrofuro[2,3-b]furan-3-yl {(2S,3R)-3-hydroxy-4-[(7E)-13-methoxy-1,1-dioxo-1,4,5,6,9,11-hexahydro-10,1lambda~6~,2-benzoxathiazacyclotridecin-2(3H)-yl]-1-phenylbutan-2-yl}carbamate
GOL
GLYCEROL
ACT
ACETATE ION
HOH
water
3I6O
PDB
experimental model
NA
501
2
NA
NA
501
A
CL
511
3
CL
CL
502
A
CL
514
3
CL
CL
503
A
GR7
201
4
GR7
GR7
201
B
CL
512
3
CL
CL
202
B
CL
513
3
CL
CL
203
B
CL
515
3
CL
CL
204
B
GOL
521
5
GOL
GOL
205
B
ACT
531
6
ACT
ACT
206
B
HOH
1097
7
HOH
HOH
601
A
HOH
1185
7
HOH
HOH
602
A
HOH
1082
7
HOH
HOH
603
A
HOH
1006
7
HOH
HOH
604
A
HOH
1026
7
HOH
HOH
605
A
HOH
1115
7
HOH
HOH
606
A
HOH
1064
7
HOH
HOH
607
A
HOH
1095
7
HOH
HOH
608
A
HOH
1120
7
HOH
HOH
609
A
HOH
1010
7
HOH
HOH
610
A
HOH
1143
7
HOH
HOH
611
A
HOH
1117
7
HOH
HOH
612
A
HOH
1098
7
HOH
HOH
613
A
HOH
1074
7
HOH
HOH
614
A
HOH
1181
7
HOH
HOH
615
A
HOH
1072
7
HOH
HOH
616
A
HOH
1150
7
HOH
HOH
617
A
HOH
1130
7
HOH
HOH
618
A
HOH
1116
7
HOH
HOH
619
A
HOH
1092
7
HOH
HOH
620
A
HOH
1050
7
HOH
HOH
621
A
HOH
1039
7
HOH
HOH
622
A
HOH
1154
7
HOH
HOH
623
A
HOH
1174
7
HOH
HOH
624
A
HOH
1042
7
HOH
HOH
625
A
HOH
1038
7
HOH
HOH
626
A
HOH
1179
7
HOH
HOH
627
A
HOH
1068
7
HOH
HOH
628
A
HOH
1007
7
HOH
HOH
629
A
HOH
1041
7
HOH
HOH
630
A
HOH
1027
7
HOH
HOH
631
A
HOH
1012
7
HOH
HOH
632
A
HOH
1176
7
HOH
HOH
633
A
HOH
1002
7
HOH
HOH
634
A
HOH
1105
7
HOH
HOH
635
A
HOH
1118
7
HOH
HOH
636
A
HOH
1119
7
HOH
HOH
637
A
HOH
1091
7
HOH
HOH
638
A
HOH
1013
7
HOH
HOH
639
A
HOH
1037
7
HOH
HOH
640
A
HOH
1057
7
HOH
HOH
641
A
HOH
1003
7
HOH
HOH
642
A
HOH
1032
7
HOH
HOH
643
A
HOH
1023
7
HOH
HOH
644
A
HOH
1126
7
HOH
HOH
645
A
HOH
1004
7
HOH
HOH
646
A
HOH
1114
7
HOH
HOH
647
A
HOH
1182
7
HOH
HOH
648
A
HOH
1019
7
HOH
HOH
649
A
HOH
1161
7
HOH
HOH
650
A
HOH
1071
7
HOH
HOH
651
A
HOH
1142
7
HOH
HOH
652
A
HOH
1147
7
HOH
HOH
653
A
HOH
1149
7
HOH
HOH
654
A
HOH
1189
7
HOH
HOH
655
A
HOH
1093
7
HOH
HOH
656
A
HOH
1145
7
HOH
HOH
657
A
HOH
1028
7
HOH
HOH
658
A
HOH
1009
7
HOH
HOH
659
A
HOH
1159
7
HOH
HOH
660
A
HOH
1175
7
HOH
HOH
661
A
HOH
1079
7
HOH
HOH
662
A
HOH
1158
7
HOH
HOH
663
A
HOH
1129
7
HOH
HOH
664
A
HOH
1088
7
HOH
HOH
665
A
HOH
1139
7
HOH
HOH
666
A
HOH
1134
7
HOH
HOH
667
A
HOH
1054
7
HOH
HOH
668
A
HOH
1025
7
HOH
HOH
669
A
HOH
1044
7
HOH
HOH
670
A
HOH
1089
7
HOH
HOH
671
A
HOH
1125
7
HOH
HOH
672
A
HOH
1005
7
HOH
HOH
673
A
HOH
1084
7
HOH
HOH
674
A
HOH
1058
7
HOH
HOH
675
A
HOH
1073
7
HOH
HOH
676
A
HOH
1011
7
HOH
HOH
677
A
HOH
1162
7
HOH
HOH
678
A
HOH
1137
7
HOH
HOH
679
A
HOH
1090
7
HOH
HOH
680
A
HOH
1153
7
HOH
HOH
681
A
HOH
1106
7
HOH
HOH
682
A
HOH
1164
7
HOH
HOH
683
A
HOH
1184
7
HOH
HOH
684
A
HOH
1014
7
HOH
HOH
685
A
HOH
1107
7
HOH
HOH
686
A
HOH
1140
7
HOH
HOH
687
A
HOH
1136
7
HOH
HOH
688
A
HOH
1146
7
HOH
HOH
689
A
HOH
1144
7
HOH
HOH
690
A
HOH
1165
7
HOH
HOH
691
A
HOH
1148
7
HOH
HOH
692
A
HOH
1157
7
HOH
HOH
301
B
HOH
1166
7
HOH
HOH
302
B
HOH
1109
7
HOH
HOH
303
B
HOH
1001
7
HOH
HOH
304
B
HOH
1015
7
HOH
HOH
305
B
HOH
1060
7
HOH
HOH
306
B
HOH
1062
7
HOH
HOH
307
B
HOH
1008
7
HOH
HOH
308
B
HOH
1063
7
HOH
HOH
309
B
HOH
1141
7
HOH
HOH
310
B
HOH
1123
7
HOH
HOH
311
B
HOH
1052
7
HOH
HOH
312
B
HOH
1094
7
HOH
HOH
313
B
HOH
1188
7
HOH
HOH
314
B
HOH
1086
7
HOH
HOH
315
B
HOH
1127
7
HOH
HOH
316
B
HOH
1047
7
HOH
HOH
317
B
HOH
1040
7
HOH
HOH
318
B
HOH
1186
7
HOH
HOH
319
B
HOH
1024
7
HOH
HOH
320
B
HOH
1020
7
HOH
HOH
321
B
HOH
1030
7
HOH
HOH
322
B
HOH
1077
7
HOH
HOH
323
B
HOH
1169
7
HOH
HOH
324
B
HOH
1016
7
HOH
HOH
325
B
HOH
1096
7
HOH
HOH
326
B
HOH
1102
7
HOH
HOH
327
B
HOH
1065
7
HOH
HOH
328
B
HOH
1075
7
HOH
HOH
329
B
HOH
1059
7
HOH
HOH
330
B
HOH
1045
7
HOH
HOH
331
B
HOH
1061
7
HOH
HOH
332
B
HOH
1178
7
HOH
HOH
333
B
HOH
1113
7
HOH
HOH
334
B
HOH
1067
7
HOH
HOH
335
B
HOH
1121
7
HOH
HOH
336
B
HOH
1053
7
HOH
HOH
337
B
HOH
1051
7
HOH
HOH
338
B
HOH
1099
7
HOH
HOH
339
B
HOH
1133
7
HOH
HOH
340
B
HOH
1112
7
HOH
HOH
341
B
HOH
1124
7
HOH
HOH
342
B
HOH
1155
7
HOH
HOH
343
B
HOH
1108
7
HOH
HOH
344
B
HOH
1048
7
HOH
HOH
345
B
HOH
1036
7
HOH
HOH
346
B
HOH
1172
7
HOH
HOH
347
B
HOH
1156
7
HOH
HOH
348
B
HOH
1069
7
HOH
HOH
349
B
HOH
1104
7
HOH
HOH
350
B
HOH
1085
7
HOH
HOH
351
B
HOH
1183
7
HOH
HOH
352
B
HOH
1110
7
HOH
HOH
353
B
HOH
1031
7
HOH
HOH
354
B
HOH
1132
7
HOH
HOH
355
B
HOH
1160
7
HOH
HOH
356
B
HOH
1177
7
HOH
HOH
357
B
HOH
1171
7
HOH
HOH
358
B
HOH
1083
7
HOH
HOH
359
B
HOH
1122
7
HOH
HOH
360
B
HOH
1080
7
HOH
HOH
361
B
HOH
1180
7
HOH
HOH
362
B
HOH
1081
7
HOH
HOH
363
B
HOH
1170
7
HOH
HOH
364
B
HOH
1055
7
HOH
HOH
365
B
HOH
1070
7
HOH
HOH
366
B
HOH
1167
7
HOH
HOH
367
B
HOH
1173
7
HOH
HOH
368
B
HOH
1033
7
HOH
HOH
369
B
HOH
1152
7
HOH
HOH
370
B
HOH
1101
7
HOH
HOH
371
B
HOH
1066
7
HOH
HOH
372
B
HOH
1046
7
HOH
HOH
373
B
HOH
1076
7
HOH
HOH
374
B
HOH
1190
7
HOH
HOH
375
B
HOH
1128
7
HOH
HOH
376
B
HOH
1017
7
HOH
HOH
377
B
HOH
1043
7
HOH
HOH
378
B
HOH
1049
7
HOH
HOH
379
B
HOH
1087
7
HOH
HOH
380
B
HOH
1034
7
HOH
HOH
381
B
HOH
1138
7
HOH
HOH
382
B
HOH
1056
7
HOH
HOH
383
B
HOH
1103
7
HOH
HOH
384
B
HOH
1035
7
HOH
HOH
385
B
HOH
1131
7
HOH
HOH
386
B
HOH
1192
7
HOH
HOH
387
B
HOH
1111
7
HOH
HOH
388
B
HOH
1151
7
HOH
HOH
389
B
HOH
1135
7
HOH
HOH
390
B
HOH
1021
7
HOH
HOH
391
B
HOH
1191
7
HOH
HOH
392
B
HOH
1100
7
HOH
HOH
393
B
HOH
1029
7
HOH
HOH
394
B
HOH
1187
7
HOH
HOH
395
B
HOH
1163
7
HOH
HOH
396
B
HOH
1168
7
HOH
HOH
397
B
HOH
1018
7
HOH
HOH
398
B
HOH
1078
7
HOH
HOH
399
B
PRO
1
n
1
PRO
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
THR
4
n
4
THR
4
A
LEU
5
n
5
LEU
5
A
TRP
6
n
6
TRP
6
A
LYS
7
n
7
LYS
7
A
ARG
8
n
8
ARG
8
A
PRO
9
n
9
PRO
9
A
LEU
10
n
10
LEU
10
A
VAL
11
n
11
VAL
11
A
THR
12
n
12
THR
12
A
ILE
13
n
13
ILE
13
A
LYS
14
n
14
LYS
14
A
ILE
15
n
15
ILE
15
A
GLY
16
n
16
GLY
16
A
GLY
17
n
17
GLY
17
A
GLN
18
n
18
GLN
18
A
LEU
19
n
19
LEU
19
A
LYS
20
n
20
LYS
20
A
GLU
21
n
21
GLU
21
A
ALA
22
n
22
ALA
22
A
LEU
23
n
23
LEU
23
A
LEU
24
n
24
LEU
24
A
ASP
25
n
25
ASP
25
A
THR
26
n
26
THR
26
A
GLY
27
n
27
GLY
27
A
ALA
28
n
28
ALA
28
A
ASP
29
n
29
ASP
29
A
ASP
30
n
30
ASP
30
A
THR
31
n
31
THR
31
A
VAL
32
n
32
VAL
32
A
ILE
33
n
33
ILE
33
A
GLU
34
n
34
GLU
34
A
GLU
35
n
35
GLU
35
A
MET
36
n
36
MET
36
A
SER
37
n
37
SER
37
A
LEU
38
n
38
LEU
38
A
PRO
39
n
39
PRO
39
A
GLY
40
n
40
GLY
40
A
ARG
41
n
41
ARG
41
A
TRP
42
n
42
TRP
42
A
LYS
43
n
43
LYS
43
A
PRO
44
n
44
PRO
44
A
LYS
45
n
45
LYS
45
A
MET
46
n
46
MET
46
A
ILE
47
n
47
ILE
47
A
GLY
48
n
48
GLY
48
A
GLY
49
n
49
GLY
49
A
ILE
50
n
50
ILE
50
A
GLY
51
n
51
GLY
51
A
GLY
52
n
52
GLY
52
A
PHE
53
n
53
PHE
53
A
ILE
54
n
54
ILE
54
A
LYS
55
n
55
LYS
55
A
VAL
56
n
56
VAL
56
A
ARG
57
n
57
ARG
57
A
GLN
58
n
58
GLN
58
A
TYR
59
n
59
TYR
59
A
ASP
60
n
60
ASP
60
A
GLN
61
n
61
GLN
61
A
ILE
62
n
62
ILE
62
A
ILE
63
n
63
ILE
63
A
ILE
64
n
64
ILE
64
A
GLU
65
n
65
GLU
65
A
ILE
66
n
66
ILE
66
A
ALA
67
n
67
ALA
67
A
GLY
68
n
68
GLY
68
A
HIS
69
n
69
HIS
69
A
LYS
70
n
70
LYS
70
A
ALA
71
n
71
ALA
71
A
ILE
72
n
72
ILE
72
A
GLY
73
n
73
GLY
73
A
THR
74
n
74
THR
74
A
VAL
75
n
75
VAL
75
A
LEU
76
n
76
LEU
76
A
VAL
77
n
77
VAL
77
A
GLY
78
n
78
GLY
78
A
PRO
79
n
79
PRO
79
A
THR
80
n
80
THR
80
A
PRO
81
n
81
PRO
81
A
VAL
82
n
82
VAL
82
A
ASN
83
n
83
ASN
83
A
ILE
84
n
84
ILE
84
A
ILE
85
n
85
ILE
85
A
GLY
86
n
86
GLY
86
A
ARG
87
n
87
ARG
87
A
ASN
88
n
88
ASN
88
A
LEU
89
n
89
LEU
89
A
LEU
90
n
90
LEU
90
A
THR
91
n
91
THR
91
A
GLN
92
n
92
GLN
92
A
ILE
93
n
93
ILE
93
A
GLY
94
n
94
GLY
94
A
ALA
95
n
95
ALA
95
A
THR
96
n
96
THR
96
A
LEU
97
n
97
LEU
97
A
ASN
98
n
98
ASN
98
A
PHE
99
n
99
PHE
99
A
PRO
1
n
1
PRO
1
B
GLN
2
n
2
GLN
2
B
ILE
3
n
3
ILE
3
B
THR
4
n
4
THR
4
B
LEU
5
n
5
LEU
5
B
TRP
6
n
6
TRP
6
B
LYS
7
n
7
LYS
7
B
ARG
8
n
8
ARG
8
B
PRO
9
n
9
PRO
9
B
LEU
10
n
10
LEU
10
B
VAL
11
n
11
VAL
11
B
THR
12
n
12
THR
12
B
ILE
13
n
13
ILE
13
B
LYS
14
n
14
LYS
14
B
ILE
15
n
15
ILE
15
B
GLY
16
n
16
GLY
16
B
GLY
17
n
17
GLY
17
B
GLN
18
n
18
GLN
18
B
LEU
19
n
19
LEU
19
B
LYS
20
n
20
LYS
20
B
GLU
21
n
21
GLU
21
B
ALA
22
n
22
ALA
22
B
LEU
23
n
23
LEU
23
B
LEU
24
n
24
LEU
24
B
ASP
25
n
25
ASP
25
B
THR
26
n
26
THR
26
B
GLY
27
n
27
GLY
27
B
ALA
28
n
28
ALA
28
B
ASP
29
n
29
ASP
29
B
ASP
30
n
30
ASP
30
B
THR
31
n
31
THR
31
B
VAL
32
n
32
VAL
32
B
ILE
33
n
33
ILE
33
B
GLU
34
n
34
GLU
34
B
GLU
35
n
35
GLU
35
B
MET
36
n
36
MET
36
B
SER
37
n
37
SER
37
B
LEU
38
n
38
LEU
38
B
PRO
39
n
39
PRO
39
B
GLY
40
n
40
GLY
40
B
ARG
41
n
41
ARG
41
B
TRP
42
n
42
TRP
42
B
LYS
43
n
43
LYS
43
B
PRO
44
n
44
PRO
44
B
LYS
45
n
45
LYS
45
B
MET
46
n
46
MET
46
B
ILE
47
n
47
ILE
47
B
GLY
48
n
48
GLY
48
B
GLY
49
n
49
GLY
49
B
ILE
50
n
50
ILE
50
B
GLY
51
n
51
GLY
51
B
GLY
52
n
52
GLY
52
B
PHE
53
n
53
PHE
53
B
ILE
54
n
54
ILE
54
B
LYS
55
n
55
LYS
55
B
VAL
56
n
56
VAL
56
B
ARG
57
n
57
ARG
57
B
GLN
58
n
58
GLN
58
B
TYR
59
n
59
TYR
59
B
ASP
60
n
60
ASP
60
B
GLN
61
n
61
GLN
61
B
ILE
62
n
62
ILE
62
B
ILE
63
n
63
ILE
63
B
ILE
64
n
64
ILE
64
B
GLU
65
n
65
GLU
65
B
ILE
66
n
66
ILE
66
B
ALA
67
n
67
ALA
67
B
GLY
68
n
68
GLY
68
B
HIS
69
n
69
HIS
69
B
LYS
70
n
70
LYS
70
B
ALA
71
n
71
ALA
71
B
ILE
72
n
72
ILE
72
B
GLY
73
n
73
GLY
73
B
THR
74
n
74
THR
74
B
VAL
75
n
75
VAL
75
B
LEU
76
n
76
LEU
76
B
VAL
77
n
77
VAL
77
B
GLY
78
n
78
GLY
78
B
PRO
79
n
79
PRO
79
B
THR
80
n
80
THR
80
B
PRO
81
n
81
PRO
81
B
VAL
82
n
82
VAL
82
B
ASN
83
n
83
ASN
83
B
ILE
84
n
84
ILE
84
B
ILE
85
n
85
ILE
85
B
GLY
86
n
86
GLY
86
B
ARG
87
n
87
ARG
87
B
ASN
88
n
88
ASN
88
B
LEU
89
n
89
LEU
89
B
LEU
90
n
90
LEU
90
B
THR
91
n
91
THR
91
B
GLN
92
n
92
GLN
92
B
ILE
93
n
93
ILE
93
B
GLY
94
n
94
GLY
94
B
ALA
95
n
95
ALA
95
B
THR
96
n
96
THR
96
B
LEU
97
n
97
LEU
97
B
ASN
98
n
98
ASN
98
B
PHE
99
n
99
PHE
99
B
0.1489
0.1612
0.1465
0.1589
0.1941
0.2054
2306
3018
5.0
5.0
45882
author_and_software_defined_assembly
PISA
2
dimeric
none
5210
-73
9430
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
604
L
O
HOH
1_555
93.0
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
634
L
O
HOH
1_555
93.4
A
HOH
604
L
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
634
L
O
HOH
1_555
90.9
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
642
L
O
HOH
1_555
103.7
A
HOH
604
L
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
642
L
O
HOH
1_555
160.7
A
HOH
634
L
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
642
L
O
HOH
1_555
78.7
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
646
L
O
HOH
1_555
77.9
A
HOH
604
L
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
646
L
O
HOH
1_555
92.1
A
HOH
634
L
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
646
L
O
HOH
1_555
171.0
A
HOH
642
L
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
646
L
O
HOH
1_555
100.8
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
673
L
O
HOH
1_555
168.1
A
HOH
604
L
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
673
L
O
HOH
1_555
76.5
A
HOH
634
L
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
673
L
O
HOH
1_555
92.4
A
HOH
642
L
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
673
L
O
HOH
1_555
87.6
A
HOH
646
L
O
HOH
1_555
A
NA
501
C
NA
NA
1_555
A
HOH
673
L
O
HOH
1_555
96.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
3
A
N
ILE
3
B
O
LEU
97
B
O
LEU
97
B
O
THR
96
B
O
THR
96
A
N
ASN
98
A
N
ASN
98
A
N
LEU
97
A
N
LEU
97
B
O
ILE
3
B
O
ILE
3
A
N
LYS
43
A
N
LYS
43
A
O
GLN
58
A
O
GLN
58
A
N
ILE
66
A
N
ILE
66
A
O
HIS
69
A
O
HIS
69
A
O
LEU
76
A
O
LEU
76
A
N
ILE
33
A
N
ILE
33
A
N
VAL
32
A
N
VAL
32
A
O
ILE
84
A
O
ILE
84
A
O
ILE
85
A
O
ILE
85
A
N
LEU
23
A
N
LEU
23
A
O
LYS
20
A
O
LYS
20
A
N
ILE
13
A
N
ILE
13
A
N
LYS
14
A
N
LYS
14
A
O
GLU
65
A
O
GLU
65
B
N
LYS
43
B
N
LYS
43
B
O
GLN
58
B
O
GLN
58
B
N
ILE
66
B
N
ILE
66
B
O
HIS
69
B
O
HIS
69
B
O
LEU
76
B
O
LEU
76
B
N
ILE
33
B
N
ILE
33
B
N
VAL
32
B
N
VAL
32
B
O
ILE
84
B
O
ILE
84
B
O
ILE
85
B
O
ILE
85
B
N
LEU
23
B
N
LEU
23
B
O
LYS
20
B
O
LYS
20
B
N
ILE
13
B
N
ILE
13
B
N
LYS
14
B
N
LYS
14
B
O
GLU
65
B
O
GLU
65
1
-4.00
0.50
120.30
116.30
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
41
41
41
N
1
3.97
0.50
120.30
124.27
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
41
41
41
N
1
-13.14
1.90
111.00
97.86
A
A
A
CA
CB
CG1
ILE
ILE
ILE
50
50
50
B
N
1
25.38
1.40
123.60
148.98
A
A
A
CD
NE
CZ
ARG
ARG
ARG
57
57
57
N
1
4.91
0.50
120.30
125.21
B
B
B
NE
CZ
NH1
ARG
ARG
ARG
57
57
57
N
ANISOTROPIC REFINEMENT REDUCED FREE R (NO CUTOFF) BY ?
0.2054
0.1589
0.1612
1.27
50.00
3018
61125
5.0
98.9
RANDOM
1
FREE R-VALUE
0.0
MOLECULAR REPLACEMENT
3I6O
55
0.
1712.5
1.27
50.00
207
1763
44
0
1512
0.0125
0.0327
0.0000
0.0045
0.0743
0.4059
0.0243
0.0000
0.0551
0.0999
1.27
50
5WLO
61214
0.064
1
26.6
6.0
98.9
0.507
1.27
1.32
2.4
1
3.3
89.4
data reduction
HKL-2000
data scaling
HKL-2000
phasing
PHASER
refinement
SHELXL
2014
N
a novel 13-ring macrocyclic HIV-1 protease inhibitors involving the P1'-P2' ligands
1
N
N
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
3
N
N
3
N
N
3
N
N
5
N
N
6
N
N
7
N
N
7
N
N
A
GLY
86
A
GLY
86
HELX_P
A
THR
91
A
THR
91
1
AA1
6
A
GLN
92
A
GLN
92
HELX_P
A
GLY
94
A
GLY
94
5
AA2
3
B
GLY
86
B
GLY
86
HELX_P
B
THR
91
B
THR
91
1
AA3
6
metalc
2.406
A
ASP
60
A
O
ASP
60
1_555
A
NA
501
C
NA
NA
1_555
metalc
2.515
A
NA
501
C
NA
NA
1_555
A
HOH
604
L
O
HOH
1_555
metalc
2.238
A
NA
501
C
NA
NA
1_555
A
HOH
634
L
O
HOH
1_555
metalc
2.320
A
NA
501
C
NA
NA
1_555
A
HOH
642
L
O
HOH
1_555
metalc
2.474
A
NA
501
C
NA
NA
1_555
A
HOH
646
L
O
HOH
1_555
metalc
2.720
A
NA
501
C
NA
NA
1_555
A
HOH
673
L
O
HOH
1_555
hydrolase/hydrolase inhibitor
HIV protease, Macrocyclic inhibitors, P1'- P2' ligands, Drug resistance, HYDROLASE, hydrolase-hydrolase inhibitor complex
Q5RZ08_9HIV1
UNP
1
1
Q5RZ08
PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT
PVNIIGRNLLTQIGCTLNF
1
99
5WLO
1
99
Q5RZ08
A
1
1
99
1
99
5WLO
1
99
Q5RZ08
B
1
1
99
1
GLN
engineered mutation
LYS
7
5WLO
A
Q5RZ08
UNP
7
7
1
LEU
engineered mutation
ILE
33
5WLO
A
Q5RZ08
UNP
33
33
1
LEU
engineered mutation
ILE
63
5WLO
A
Q5RZ08
UNP
63
63
1
CYS
engineered mutation
ALA
67
5WLO
A
Q5RZ08
UNP
67
67
1
CYS
engineered mutation
ALA
95
5WLO
A
Q5RZ08
UNP
95
95
2
GLN
engineered mutation
LYS
7
5WLO
B
Q5RZ08
UNP
7
7
2
LEU
engineered mutation
ILE
33
5WLO
B
Q5RZ08
UNP
33
33
2
LEU
engineered mutation
ILE
63
5WLO
B
Q5RZ08
UNP
63
63
2
CYS
engineered mutation
ALA
67
5WLO
B
Q5RZ08
UNP
67
67
2
CYS
engineered mutation
ALA
95
5WLO
B
Q5RZ08
UNP
95
95
4
8
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
GLN
2
A
GLN
2
A
ILE
3
A
ILE
3
B
THR
96
B
THR
96
B
ASN
98
B
ASN
98
A
THR
96
A
THR
96
A
ASN
98
A
ASN
98
B
GLN
2
B
GLN
2
B
ILE
3
B
ILE
3
A
LYS
43
A
LYS
43
A
GLY
49
A
GLY
49
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
A
HIS
69
A
HIS
69
A
VAL
77
A
VAL
77
A
THR
31
A
THR
31
A
ILE
33
A
ILE
33
A
ILE
84
A
ILE
84
A
ILE
85
A
ILE
85
A
GLN
18
A
GLN
18
A
LEU
24
A
LEU
24
A
LEU
10
A
LEU
10
A
ILE
15
A
ILE
15
A
GLY
52
A
GLY
52
A
ILE
66
A
ILE
66
B
LYS
43
B
LYS
43
B
GLY
49
B
GLY
49
B
GLY
52
B
GLY
52
B
ILE
66
B
ILE
66
B
HIS
69
B
HIS
69
B
VAL
77
B
VAL
77
B
VAL
32
B
VAL
32
B
ILE
33
B
ILE
33
B
ILE
84
B
ILE
84
B
ILE
85
B
ILE
85
B
GLN
18
B
GLN
18
B
LEU
24
B
LEU
24
B
LEU
10
B
LEU
10
B
ILE
15
B
ILE
15
B
GLY
52
B
GLY
52
B
ILE
66
B
ILE
66
binding site for residue NA A 501
A
NA
501
Software
6
binding site for residue CL A 502
A
CL
502
Software
4
binding site for residue CL A 503
A
CL
503
Software
4
binding site for residue GR7 B 201
B
GR7
201
Software
28
binding site for residue CL B 202
B
CL
202
Software
1
binding site for residue CL B 203
B
CL
203
Software
3
binding site for residue CL B 204
B
CL
204
Software
3
binding site for residue GOL B 205
B
GOL
205
Software
5
binding site for residue ACT B 206
B
ACT
206
Software
5
A
ASP
60
A
ASP
60
6
1_555
A
HOH
604
L
HOH
6
1_555
A
HOH
634
L
HOH
6
1_555
A
HOH
642
L
HOH
6
1_555
A
HOH
646
L
HOH
6
1_555
A
HOH
673
L
HOH
6
1_555
A
THR
74
A
THR
74
4
1_555
A
ASN
88
A
ASN
88
4
1_555
A
HOH
687
L
HOH
4
1_555
B
ARG
41
B
ARG
41
4
3_555
A
GLN
18
A
GLN
18
4
1_555
A
MET
36
A
MET
36
4
1_555
A
SER
37
A
SER
37
4
1_555
A
HOH
679
L
HOH
4
1_555
A
ARG
8
A
ARG
8
28
1_555
A
ASP
25
A
ASP
25
28
1_555
A
GLY
27
A
GLY
27
28
1_555
A
ALA
28
A
ALA
28
28
1_555
A
ASP
29
A
ASP
29
28
1_555
A
ASP
30
A
ASP
30
28
1_555
A
GLY
48
A
GLY
48
28
1_555
A
GLY
49
A
GLY
49
28
1_555
A
ILE
50
A
ILE
50
28
1_555
A
PRO
81
A
PRO
81
28
1_555
A
VAL
82
A
VAL
82
28
1_555
A
ILE
84
A
ILE
84
28
1_555
A
HOH
629
L
HOH
28
1_555
B
ARG
8
B
ARG
8
28
1_555
B
ASP
25
B
ASP
25
28
1_555
B
GLY
27
B
GLY
27
28
1_555
B
ALA
28
B
ALA
28
28
1_555
B
ASP
29
B
ASP
29
28
1_555
B
ASP
30
B
ASP
30
28
1_555
B
GLY
48
B
GLY
48
28
1_555
B
GLY
49
B
GLY
49
28
1_555
B
ILE
50
B
ILE
50
28
1_555
B
PRO
81
B
PRO
81
28
1_555
B
VAL
82
B
VAL
82
28
1_555
B
ILE
84
B
ILE
84
28
1_555
B
HOH
304
M
HOH
28
1_555
B
HOH
305
M
HOH
28
1_555
B
HOH
308
M
HOH
28
1_555
B
TRP
6
B
TRP
6
1
1_555
B
THR
74
B
THR
74
3
1_555
B
ASN
88
B
ASN
88
3
1_555
B
HOH
332
M
HOH
3
1_555
B
GLN
18
B
GLN
18
3
1_555
B
MET
36
B
MET
36
3
1_555
B
SER
37
B
SER
37
3
1_555
B
LYS
55
B
LYS
55
5
1_555
B
VAL
56
B
VAL
56
5
1_555
B
ARG
57
B
ARG
57
5
1_555
B
HOH
333
M
HOH
5
1_555
B
HOH
357
M
HOH
5
1_555
B
PRO
39
B
PRO
39
5
1_555
B
ARG
41
B
ARG
41
5
1_555
B
TYR
59
B
TYR
59
5
1_555
B
ASP
60
B
ASP
60
5
1_555
B
HOH
302
M
HOH
5
1_555
18
P 21 21 2