0.017072
0.000000
0.000000
-0.000000
0.006673
0.000000
0.000000
-0.000000
0.006178
0.000000
0.000000
0.000000
Sagong, H.-Y.
Kim, K.-J.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.000
90.000
90.000
58.574
149.851
161.858
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C8 H10 N O6 P
247.142
PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
S
C
N
153
N
C
N
154
N
O
N
155
N
C
Y
156
N
C
Y
157
N
N
Y
158
N
C
Y
159
N
C
Y
160
N
N
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
S
C
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
N
N
198
S
C
N
199
N
C
N
200
N
O
N
201
N
C
N
202
N
C
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
N
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
N
N
245
S
C
N
246
N
C
N
247
N
O
N
248
N
C
N
249
N
C
N
250
N
S
N
251
N
C
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
MG
N
265
N
N
N
266
S
C
N
267
N
C
N
268
N
O
N
269
N
C
Y
270
N
C
Y
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
N
276
N
O
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
Y
288
N
N
Y
289
N
C
N
290
N
C
Y
291
N
C
N
292
N
O
Y
293
N
C
N
294
N
C
N
295
N
O
Y
296
N
C
Y
297
N
C
N
298
N
C
N
299
N
O
N
300
N
P
N
301
N
O
N
302
N
O
N
303
N
O
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
N
N
315
S
C
N
316
N
C
N
317
N
O
N
318
N
C
N
319
N
C
N
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
N
336
N
O
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
N
N
346
S
C
N
347
N
C
N
348
N
O
N
349
R
C
N
350
N
O
N
351
N
C
N
352
N
O
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
N
N
363
S
C
N
364
N
C
N
365
N
O
N
366
N
C
Y
367
N
C
Y
368
N
C
Y
369
N
C
Y
370
N
N
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
N
376
N
O
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
Y
397
N
C
Y
398
N
C
Y
399
N
C
N
400
N
O
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
N
N
414
S
C
N
415
N
C
N
416
N
O
N
417
N
C
N
418
N
C
N
419
N
C
N
420
N
O
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
H
N
430
N
H
N
431
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
doub
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
doub
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
doub
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
Y
261
N
doub
Y
262
N
sing
Y
263
N
sing
N
264
N
sing
Y
265
N
doub
N
266
N
sing
Y
267
N
doub
N
268
N
sing
Y
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
Y
273
N
doub
Y
274
N
sing
N
275
N
sing
Y
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
Y
281
N
doub
N
282
N
sing
N
283
N
sing
Y
284
N
sing
N
285
N
doub
N
286
N
sing
Y
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
Y
356
N
doub
Y
357
N
sing
Y
358
N
sing
N
359
N
sing
Y
360
N
doub
Y
361
N
sing
Y
362
N
sing
N
363
N
sing
Y
364
N
sing
Y
365
N
doub
N
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
Y
384
N
doub
Y
385
N
sing
Y
386
N
sing
N
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
doub
N
391
N
sing
Y
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
doub
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
US
J. Agric. Food Chem.
1520-5118
65
6002
6008
10.1021/acs.jafc.7b02391
28675039
Structural Insights into Substrate Specificity of Cystathionine gamma-Synthase from Corynebacterium glutamicum
2017
10.2210/pdb5x5h/pdb
pdb_00005x5h
100
1
CCD
2016-11-17
ADSC QUANTUM 270
Double Crystal Monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.97934
1.0
7A (6B, 6C1)
PAL/PLS
0.97934
SYNCHROTRON
PAL/PLS BEAMLINE 7A (6B, 6C1)
42527.840
Cystathionine beta-lyases/cystathionine gamma-synthases
2.5.1.48
1
man
polymer
247.142
PYRIDOXAL-5'-PHOSPHATE
1
syn
non-polymer
92.094
GLYCEROL
3
syn
non-polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
18.015
water
254
nat
water
no
no
MSFDPNTQGFSTASIHAGYEPDDYYGSINTPIYASTTFAQNAPNELRKGYEYTRVGNPTIVALEQTVAALEGAKYGRAFS
SGMAATDILFRIILKPGDHIVLGNDAYGGTYRLIDTVFTAWGVEYTVVDTSVVEEVKAAIKDNTKLIWVETPTNPALGIT
DIEAVAKLTEGTNAKLVVDNTFASPYLQQPLKLGAHAVLHSTTKYIGGHSDVVGGLVVTNDQEMDEELLFMQGGIGPIPS
VFDAYLTARGLKTLAVRMDRHCDNAEKIAEFLDSRPEVSTVLYPGLKNHPGHEVAAKQMKRFGGMISVRFAGGEEAAKKF
CTSTKLICLAESLGGVESLLEHPATMTHQSAAGSQLEVPRDLVRISIGIEDIEDLLADVEQALNNLHHHHHH
MSFDPNTQGFSTASIHAGYEPDDYYGSINTPIYASTTFAQNAPNELRKGYEYTRVGNPTIVALEQTVAALEGAKYGRAFS
SGMAATDILFRIILKPGDHIVLGNDAYGGTYRLIDTVFTAWGVEYTVVDTSVVEEVKAAIKDNTKLIWVETPTNPALGIT
DIEAVAKLTEGTNAKLVVDNTFASPYLQQPLKLGAHAVLHSTTKYIGGHSDVVGGLVVTNDQEMDEELLFMQGGIGPIPS
VFDAYLTARGLKTLAVRMDRHCDNAEKIAEFLDSRPEVSTVLYPGLKNHPGHEVAAKQMKRFGGMISVRFAGGEEAAKKF
CTSTKLICLAESLGGVESLLEHPATMTHQSAAGSQLEVPRDLVRISIGIEDIEDLLADVEQALNNLHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025
sample
1
392
Cgl2446
196627
Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
511693
Escherichia coli BL21
BL21
plasmid
Biological sequence
pET30a
1
2.14
42.44
VAPOR DIFFUSION, HANGING DROP
PEG 3350, Magnesium formate
293
citation
struct
struct_conn
struct_conn_type
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
repository
Initial release
Database references
Derived calculations
Structure summary
Data collection
Database references
Refinement description
1
0
2017-03-01
1
1
2017-08-16
1
2
2020-09-16
1
3
2023-11-22
_citation.country
_citation.journal_abbrev
_citation.journal_id_CSD
_citation.journal_id_ISSN
_citation.journal_volume
_citation.page_first
_citation.page_last
_citation.pdbx_database_id_DOI
_citation.pdbx_database_id_PubMed
_citation.title
_citation.year
_struct.title
_struct_conn.conn_type_id
_struct_conn.id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn_type.id
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
N
PDBJ
Y
PDBJ
2017-02-16
REL
REL
PLP
PYRIDOXAL-5'-PHOSPHATE
GOL
GLYCEROL
MG
MAGNESIUM ION
HOH
water
3QHX
PDB
experimental model
PLP
1
2
PLP
PLP
401
A
GOL
1
3
GOL
GOL
402
A
GOL
2
3
GOL
GOL
403
A
GOL
3
3
GOL
GOL
404
A
MG
1
4
MG
MG
405
A
MG
2
4
MG
MG
406
A
HOH
205
5
HOH
HOH
501
A
HOH
324
5
HOH
HOH
502
A
HOH
268
5
HOH
HOH
503
A
HOH
321
5
HOH
HOH
504
A
HOH
332
5
HOH
HOH
505
A
HOH
221
5
HOH
HOH
506
A
HOH
329
5
HOH
HOH
507
A
HOH
66
5
HOH
HOH
508
A
HOH
193
5
HOH
HOH
509
A
HOH
138
5
HOH
HOH
510
A
HOH
4
5
HOH
HOH
511
A
HOH
52
5
HOH
HOH
512
A
HOH
312
5
HOH
HOH
513
A
HOH
195
5
HOH
HOH
514
A
HOH
315
5
HOH
HOH
515
A
HOH
178
5
HOH
HOH
516
A
HOH
225
5
HOH
HOH
517
A
HOH
212
5
HOH
HOH
518
A
HOH
233
5
HOH
HOH
519
A
HOH
167
5
HOH
HOH
520
A
HOH
200
5
HOH
HOH
521
A
HOH
34
5
HOH
HOH
522
A
HOH
240
5
HOH
HOH
523
A
HOH
161
5
HOH
HOH
524
A
HOH
147
5
HOH
HOH
525
A
HOH
54
5
HOH
HOH
526
A
HOH
12
5
HOH
HOH
527
A
HOH
137
5
HOH
HOH
528
A
HOH
337
5
HOH
HOH
529
A
HOH
215
5
HOH
HOH
530
A
HOH
119
5
HOH
HOH
531
A
HOH
231
5
HOH
HOH
532
A
HOH
143
5
HOH
HOH
533
A
HOH
223
5
HOH
HOH
534
A
HOH
62
5
HOH
HOH
535
A
HOH
186
5
HOH
HOH
536
A
HOH
8
5
HOH
HOH
537
A
HOH
17
5
HOH
HOH
538
A
HOH
13
5
HOH
HOH
539
A
HOH
112
5
HOH
HOH
540
A
HOH
164
5
HOH
HOH
541
A
HOH
16
5
HOH
HOH
542
A
HOH
247
5
HOH
HOH
543
A
HOH
31
5
HOH
HOH
544
A
HOH
153
5
HOH
HOH
545
A
HOH
249
5
HOH
HOH
546
A
HOH
149
5
HOH
HOH
547
A
HOH
187
5
HOH
HOH
548
A
HOH
131
5
HOH
HOH
549
A
HOH
107
5
HOH
HOH
550
A
HOH
326
5
HOH
HOH
551
A
HOH
237
5
HOH
HOH
552
A
HOH
162
5
HOH
HOH
553
A
HOH
39
5
HOH
HOH
554
A
HOH
201
5
HOH
HOH
555
A
HOH
36
5
HOH
HOH
556
A
HOH
41
5
HOH
HOH
557
A
HOH
239
5
HOH
HOH
558
A
HOH
172
5
HOH
HOH
559
A
HOH
214
5
HOH
HOH
560
A
HOH
190
5
HOH
HOH
561
A
HOH
194
5
HOH
HOH
562
A
HOH
67
5
HOH
HOH
563
A
HOH
70
5
HOH
HOH
564
A
HOH
25
5
HOH
HOH
565
A
HOH
18
5
HOH
HOH
566
A
HOH
134
5
HOH
HOH
567
A
HOH
24
5
HOH
HOH
568
A
HOH
122
5
HOH
HOH
569
A
HOH
88
5
HOH
HOH
570
A
HOH
3
5
HOH
HOH
571
A
HOH
75
5
HOH
HOH
572
A
HOH
155
5
HOH
HOH
573
A
HOH
213
5
HOH
HOH
574
A
HOH
80
5
HOH
HOH
575
A
HOH
114
5
HOH
HOH
576
A
HOH
116
5
HOH
HOH
577
A
HOH
124
5
HOH
HOH
578
A
HOH
96
5
HOH
HOH
579
A
HOH
179
5
HOH
HOH
580
A
HOH
10
5
HOH
HOH
581
A
HOH
94
5
HOH
HOH
582
A
HOH
86
5
HOH
HOH
583
A
HOH
177
5
HOH
HOH
584
A
HOH
53
5
HOH
HOH
585
A
HOH
74
5
HOH
HOH
586
A
HOH
105
5
HOH
HOH
587
A
HOH
22
5
HOH
HOH
588
A
HOH
77
5
HOH
HOH
589
A
HOH
81
5
HOH
HOH
590
A
HOH
238
5
HOH
HOH
591
A
HOH
58
5
HOH
HOH
592
A
HOH
234
5
HOH
HOH
593
A
HOH
185
5
HOH
HOH
594
A
HOH
171
5
HOH
HOH
595
A
HOH
100
5
HOH
HOH
596
A
HOH
189
5
HOH
HOH
597
A
HOH
196
5
HOH
HOH
598
A
HOH
51
5
HOH
HOH
599
A
HOH
267
5
HOH
HOH
600
A
HOH
47
5
HOH
HOH
601
A
HOH
89
5
HOH
HOH
602
A
HOH
23
5
HOH
HOH
603
A
HOH
139
5
HOH
HOH
604
A
HOH
46
5
HOH
HOH
605
A
HOH
327
5
HOH
HOH
606
A
HOH
208
5
HOH
HOH
607
A
HOH
40
5
HOH
HOH
608
A
HOH
21
5
HOH
HOH
609
A
HOH
83
5
HOH
HOH
610
A
HOH
235
5
HOH
HOH
611
A
HOH
45
5
HOH
HOH
612
A
HOH
127
5
HOH
HOH
613
A
HOH
7
5
HOH
HOH
614
A
HOH
99
5
HOH
HOH
615
A
HOH
241
5
HOH
HOH
616
A
HOH
125
5
HOH
HOH
617
A
HOH
128
5
HOH
HOH
618
A
HOH
199
5
HOH
HOH
619
A
HOH
64
5
HOH
HOH
620
A
HOH
136
5
HOH
HOH
621
A
HOH
101
5
HOH
HOH
622
A
HOH
72
5
HOH
HOH
623
A
HOH
142
5
HOH
HOH
624
A
HOH
176
5
HOH
HOH
625
A
HOH
130
5
HOH
HOH
626
A
HOH
328
5
HOH
HOH
627
A
HOH
157
5
HOH
HOH
628
A
HOH
91
5
HOH
HOH
629
A
HOH
50
5
HOH
HOH
630
A
HOH
228
5
HOH
HOH
631
A
HOH
104
5
HOH
HOH
632
A
HOH
180
5
HOH
HOH
633
A
HOH
26
5
HOH
HOH
634
A
HOH
32
5
HOH
HOH
635
A
HOH
169
5
HOH
HOH
636
A
HOH
338
5
HOH
HOH
637
A
HOH
43
5
HOH
HOH
638
A
HOH
30
5
HOH
HOH
639
A
HOH
313
5
HOH
HOH
640
A
HOH
44
5
HOH
HOH
641
A
HOH
118
5
HOH
HOH
642
A
HOH
183
5
HOH
HOH
643
A
HOH
173
5
HOH
HOH
644
A
HOH
73
5
HOH
HOH
645
A
HOH
14
5
HOH
HOH
646
A
HOH
330
5
HOH
HOH
647
A
HOH
92
5
HOH
HOH
648
A
HOH
38
5
HOH
HOH
649
A
HOH
69
5
HOH
HOH
650
A
HOH
266
5
HOH
HOH
651
A
HOH
170
5
HOH
HOH
652
A
HOH
28
5
HOH
HOH
653
A
HOH
145
5
HOH
HOH
654
A
HOH
252
5
HOH
HOH
655
A
HOH
242
5
HOH
HOH
656
A
HOH
79
5
HOH
HOH
657
A
HOH
102
5
HOH
HOH
658
A
HOH
15
5
HOH
HOH
659
A
HOH
98
5
HOH
HOH
660
A
HOH
56
5
HOH
HOH
661
A
HOH
120
5
HOH
HOH
662
A
HOH
129
5
HOH
HOH
663
A
HOH
106
5
HOH
HOH
664
A
HOH
37
5
HOH
HOH
665
A
HOH
123
5
HOH
HOH
666
A
HOH
49
5
HOH
HOH
667
A
HOH
11
5
HOH
HOH
668
A
HOH
82
5
HOH
HOH
669
A
HOH
27
5
HOH
HOH
670
A
HOH
146
5
HOH
HOH
671
A
HOH
202
5
HOH
HOH
672
A
HOH
160
5
HOH
HOH
673
A
HOH
48
5
HOH
HOH
674
A
HOH
335
5
HOH
HOH
675
A
HOH
206
5
HOH
HOH
676
A
HOH
322
5
HOH
HOH
677
A
HOH
182
5
HOH
HOH
678
A
HOH
55
5
HOH
HOH
679
A
HOH
57
5
HOH
HOH
680
A
HOH
281
5
HOH
HOH
681
A
HOH
132
5
HOH
HOH
682
A
HOH
198
5
HOH
HOH
683
A
HOH
6
5
HOH
HOH
684
A
HOH
211
5
HOH
HOH
685
A
HOH
85
5
HOH
HOH
686
A
HOH
261
5
HOH
HOH
687
A
HOH
78
5
HOH
HOH
688
A
HOH
113
5
HOH
HOH
689
A
HOH
243
5
HOH
HOH
690
A
HOH
319
5
HOH
HOH
691
A
HOH
144
5
HOH
HOH
692
A
HOH
126
5
HOH
HOH
693
A
HOH
29
5
HOH
HOH
694
A
HOH
133
5
HOH
HOH
695
A
HOH
158
5
HOH
HOH
696
A
HOH
115
5
HOH
HOH
697
A
HOH
150
5
HOH
HOH
698
A
HOH
151
5
HOH
HOH
699
A
HOH
68
5
HOH
HOH
700
A
HOH
9
5
HOH
HOH
701
A
HOH
97
5
HOH
HOH
702
A
HOH
192
5
HOH
HOH
703
A
HOH
280
5
HOH
HOH
704
A
HOH
42
5
HOH
HOH
705
A
HOH
222
5
HOH
HOH
706
A
HOH
65
5
HOH
HOH
707
A
HOH
59
5
HOH
HOH
708
A
HOH
159
5
HOH
HOH
709
A
HOH
90
5
HOH
HOH
710
A
HOH
121
5
HOH
HOH
711
A
HOH
314
5
HOH
HOH
712
A
HOH
135
5
HOH
HOH
713
A
HOH
61
5
HOH
HOH
714
A
HOH
318
5
HOH
HOH
715
A
HOH
76
5
HOH
HOH
716
A
HOH
220
5
HOH
HOH
717
A
HOH
306
5
HOH
HOH
718
A
HOH
152
5
HOH
HOH
719
A
HOH
109
5
HOH
HOH
720
A
HOH
302
5
HOH
HOH
721
A
HOH
84
5
HOH
HOH
722
A
HOH
103
5
HOH
HOH
723
A
HOH
168
5
HOH
HOH
724
A
HOH
303
5
HOH
HOH
725
A
HOH
269
5
HOH
HOH
726
A
HOH
140
5
HOH
HOH
727
A
HOH
270
5
HOH
HOH
728
A
HOH
304
5
HOH
HOH
729
A
HOH
336
5
HOH
HOH
730
A
HOH
60
5
HOH
HOH
731
A
HOH
71
5
HOH
HOH
732
A
HOH
181
5
HOH
HOH
733
A
HOH
301
5
HOH
HOH
734
A
HOH
5
5
HOH
HOH
735
A
HOH
309
5
HOH
HOH
736
A
HOH
209
5
HOH
HOH
737
A
HOH
95
5
HOH
HOH
738
A
HOH
148
5
HOH
HOH
739
A
HOH
203
5
HOH
HOH
740
A
HOH
305
5
HOH
HOH
741
A
HOH
165
5
HOH
HOH
742
A
HOH
184
5
HOH
HOH
743
A
HOH
264
5
HOH
HOH
744
A
HOH
191
5
HOH
HOH
745
A
HOH
224
5
HOH
HOH
746
A
HOH
163
5
HOH
HOH
747
A
HOH
227
5
HOH
HOH
748
A
HOH
300
5
HOH
HOH
749
A
HOH
174
5
HOH
HOH
750
A
HOH
87
5
HOH
HOH
751
A
HOH
217
5
HOH
HOH
752
A
HOH
207
5
HOH
HOH
753
A
HOH
320
5
HOH
HOH
754
A
n
1
1
A
n
2
2
A
PHE
3
n
3
PHE
3
A
ASP
4
n
4
ASP
4
A
PRO
5
n
5
PRO
5
A
ASN
6
n
6
ASN
6
A
THR
7
n
7
THR
7
A
GLN
8
n
8
GLN
8
A
GLY
9
n
9
GLY
9
A
PHE
10
n
10
PHE
10
A
SER
11
n
11
SER
11
A
THR
12
n
12
THR
12
A
ALA
13
n
13
ALA
13
A
SER
14
n
14
SER
14
A
ILE
15
n
15
ILE
15
A
HIS
16
n
16
HIS
16
A
ALA
17
n
17
ALA
17
A
GLY
18
n
18
GLY
18
A
TYR
19
n
19
TYR
19
A
GLU
20
n
20
GLU
20
A
PRO
21
n
21
PRO
21
A
ASP
22
n
22
ASP
22
A
ASP
23
n
23
ASP
23
A
TYR
24
n
24
TYR
24
A
TYR
25
n
25
TYR
25
A
GLY
26
n
26
GLY
26
A
SER
27
n
27
SER
27
A
ILE
28
n
28
ILE
28
A
ASN
29
n
29
ASN
29
A
THR
30
n
30
THR
30
A
PRO
31
n
31
PRO
31
A
ILE
32
n
32
ILE
32
A
TYR
33
n
33
TYR
33
A
ALA
34
n
34
ALA
34
A
SER
35
n
35
SER
35
A
THR
36
n
36
THR
36
A
THR
37
n
37
THR
37
A
PHE
38
n
38
PHE
38
A
ALA
39
n
39
ALA
39
A
GLN
40
n
40
GLN
40
A
ASN
41
n
41
ASN
41
A
ALA
42
n
42
ALA
42
A
PRO
43
n
43
PRO
43
A
ASN
44
n
44
ASN
44
A
GLU
45
n
45
GLU
45
A
LEU
46
n
46
LEU
46
A
ARG
47
n
47
ARG
47
A
LYS
48
n
48
LYS
48
A
GLY
49
n
49
GLY
49
A
TYR
50
n
50
TYR
50
A
GLU
51
n
51
GLU
51
A
TYR
52
n
52
TYR
52
A
THR
53
n
53
THR
53
A
ARG
54
n
54
ARG
54
A
VAL
55
n
55
VAL
55
A
GLY
56
n
56
GLY
56
A
ASN
57
n
57
ASN
57
A
PRO
58
n
58
PRO
58
A
THR
59
n
59
THR
59
A
ILE
60
n
60
ILE
60
A
VAL
61
n
61
VAL
61
A
ALA
62
n
62
ALA
62
A
LEU
63
n
63
LEU
63
A
GLU
64
n
64
GLU
64
A
GLN
65
n
65
GLN
65
A
THR
66
n
66
THR
66
A
VAL
67
n
67
VAL
67
A
ALA
68
n
68
ALA
68
A
ALA
69
n
69
ALA
69
A
LEU
70
n
70
LEU
70
A
GLU
71
n
71
GLU
71
A
GLY
72
n
72
GLY
72
A
ALA
73
n
73
ALA
73
A
LYS
74
n
74
LYS
74
A
TYR
75
n
75
TYR
75
A
GLY
76
n
76
GLY
76
A
ARG
77
n
77
ARG
77
A
ALA
78
n
78
ALA
78
A
PHE
79
n
79
PHE
79
A
SER
80
n
80
SER
80
A
SER
81
n
81
SER
81
A
GLY
82
n
82
GLY
82
A
MET
83
n
83
MET
83
A
ALA
84
n
84
ALA
84
A
ALA
85
n
85
ALA
85
A
THR
86
n
86
THR
86
A
ASP
87
n
87
ASP
87
A
ILE
88
n
88
ILE
88
A
LEU
89
n
89
LEU
89
A
PHE
90
n
90
PHE
90
A
ARG
91
n
91
ARG
91
A
ILE
92
n
92
ILE
92
A
ILE
93
n
93
ILE
93
A
LEU
94
n
94
LEU
94
A
LYS
95
n
95
LYS
95
A
PRO
96
n
96
PRO
96
A
GLY
97
n
97
GLY
97
A
ASP
98
n
98
ASP
98
A
HIS
99
n
99
HIS
99
A
ILE
100
n
100
ILE
100
A
VAL
101
n
101
VAL
101
A
LEU
102
n
102
LEU
102
A
GLY
103
n
103
GLY
103
A
ASN
104
n
104
ASN
104
A
ASP
105
n
105
ASP
105
A
ALA
106
n
106
ALA
106
A
TYR
107
n
107
TYR
107
A
GLY
108
n
108
GLY
108
A
GLY
109
n
109
GLY
109
A
THR
110
n
110
THR
110
A
TYR
111
n
111
TYR
111
A
ARG
112
n
112
ARG
112
A
LEU
113
n
113
LEU
113
A
ILE
114
n
114
ILE
114
A
ASP
115
n
115
ASP
115
A
THR
116
n
116
THR
116
A
VAL
117
n
117
VAL
117
A
PHE
118
n
118
PHE
118
A
THR
119
n
119
THR
119
A
ALA
120
n
120
ALA
120
A
TRP
121
n
121
TRP
121
A
GLY
122
n
122
GLY
122
A
VAL
123
n
123
VAL
123
A
GLU
124
n
124
GLU
124
A
TYR
125
n
125
TYR
125
A
THR
126
n
126
THR
126
A
VAL
127
n
127
VAL
127
A
VAL
128
n
128
VAL
128
A
ASP
129
n
129
ASP
129
A
THR
130
n
130
THR
130
A
SER
131
n
131
SER
131
A
VAL
132
n
132
VAL
132
A
VAL
133
n
133
VAL
133
A
GLU
134
n
134
GLU
134
A
GLU
135
n
135
GLU
135
A
VAL
136
n
136
VAL
136
A
LYS
137
n
137
LYS
137
A
ALA
138
n
138
ALA
138
A
ALA
139
n
139
ALA
139
A
ILE
140
n
140
ILE
140
A
LYS
141
n
141
LYS
141
A
ASP
142
n
142
ASP
142
A
ASN
143
n
143
ASN
143
A
THR
144
n
144
THR
144
A
LYS
145
n
145
LYS
145
A
LEU
146
n
146
LEU
146
A
ILE
147
n
147
ILE
147
A
TRP
148
n
148
TRP
148
A
VAL
149
n
149
VAL
149
A
GLU
150
n
150
GLU
150
A
THR
151
n
151
THR
151
A
PRO
152
n
152
PRO
152
A
THR
153
n
153
THR
153
A
ASN
154
n
154
ASN
154
A
PRO
155
n
155
PRO
155
A
ALA
156
n
156
ALA
156
A
LEU
157
n
157
LEU
157
A
GLY
158
n
158
GLY
158
A
ILE
159
n
159
ILE
159
A
THR
160
n
160
THR
160
A
ASP
161
n
161
ASP
161
A
ILE
162
n
162
ILE
162
A
GLU
163
n
163
GLU
163
A
ALA
164
n
164
ALA
164
A
VAL
165
n
165
VAL
165
A
ALA
166
n
166
ALA
166
A
LYS
167
n
167
LYS
167
A
LEU
168
n
168
LEU
168
A
THR
169
n
169
THR
169
A
GLU
170
n
170
GLU
170
A
GLY
171
n
171
GLY
171
A
THR
172
n
172
THR
172
A
ASN
173
n
173
ASN
173
A
ALA
174
n
174
ALA
174
A
LYS
175
n
175
LYS
175
A
LEU
176
n
176
LEU
176
A
VAL
177
n
177
VAL
177
A
VAL
178
n
178
VAL
178
A
ASP
179
n
179
ASP
179
A
ASN
180
n
180
ASN
180
A
THR
181
n
181
THR
181
A
PHE
182
n
182
PHE
182
A
ALA
183
n
183
ALA
183
A
SER
184
n
184
SER
184
A
PRO
185
n
185
PRO
185
A
TYR
186
n
186
TYR
186
A
LEU
187
n
187
LEU
187
A
GLN
188
n
188
GLN
188
A
GLN
189
n
189
GLN
189
A
PRO
190
n
190
PRO
190
A
LEU
191
n
191
LEU
191
A
LYS
192
n
192
LYS
192
A
LEU
193
n
193
LEU
193
A
GLY
194
n
194
GLY
194
A
ALA
195
n
195
ALA
195
A
HIS
196
n
196
HIS
196
A
ALA
197
n
197
ALA
197
A
VAL
198
n
198
VAL
198
A
LEU
199
n
199
LEU
199
A
HIS
200
n
200
HIS
200
A
SER
201
n
201
SER
201
A
THR
202
n
202
THR
202
A
THR
203
n
203
THR
203
A
LYS
204
n
204
LYS
204
A
TYR
205
n
205
TYR
205
A
ILE
206
n
206
ILE
206
A
GLY
207
n
207
GLY
207
A
GLY
208
n
208
GLY
208
A
HIS
209
n
209
HIS
209
A
SER
210
n
210
SER
210
A
ASP
211
n
211
ASP
211
A
VAL
212
n
212
VAL
212
A
VAL
213
n
213
VAL
213
A
GLY
214
n
214
GLY
214
A
GLY
215
n
215
GLY
215
A
LEU
216
n
216
LEU
216
A
VAL
217
n
217
VAL
217
A
VAL
218
n
218
VAL
218
A
THR
219
n
219
THR
219
A
ASN
220
n
220
ASN
220
A
ASP
221
n
221
ASP
221
A
GLN
222
n
222
GLN
222
A
GLU
223
n
223
GLU
223
A
MET
224
n
224
MET
224
A
ASP
225
n
225
ASP
225
A
GLU
226
n
226
GLU
226
A
GLU
227
n
227
GLU
227
A
LEU
228
n
228
LEU
228
A
LEU
229
n
229
LEU
229
A
PHE
230
n
230
PHE
230
A
MET
231
n
231
MET
231
A
GLN
232
n
232
GLN
232
A
GLY
233
n
233
GLY
233
A
GLY
234
n
234
GLY
234
A
ILE
235
n
235
ILE
235
A
GLY
236
n
236
GLY
236
A
PRO
237
n
237
PRO
237
A
ILE
238
n
238
ILE
238
A
PRO
239
n
239
PRO
239
A
SER
240
n
240
SER
240
A
VAL
241
n
241
VAL
241
A
PHE
242
n
242
PHE
242
A
ASP
243
n
243
ASP
243
A
ALA
244
n
244
ALA
244
A
TYR
245
n
245
TYR
245
A
LEU
246
n
246
LEU
246
A
THR
247
n
247
THR
247
A
ALA
248
n
248
ALA
248
A
ARG
249
n
249
ARG
249
A
GLY
250
n
250
GLY
250
A
LEU
251
n
251
LEU
251
A
LYS
252
n
252
LYS
252
A
THR
253
n
253
THR
253
A
LEU
254
n
254
LEU
254
A
ALA
255
n
255
ALA
255
A
VAL
256
n
256
VAL
256
A
ARG
257
n
257
ARG
257
A
MET
258
n
258
MET
258
A
ASP
259
n
259
ASP
259
A
ARG
260
n
260
ARG
260
A
HIS
261
n
261
HIS
261
A
CYS
262
n
262
CYS
262
A
ASP
263
n
263
ASP
263
A
ASN
264
n
264
ASN
264
A
ALA
265
n
265
ALA
265
A
GLU
266
n
266
GLU
266
A
LYS
267
n
267
LYS
267
A
ILE
268
n
268
ILE
268
A
ALA
269
n
269
ALA
269
A
GLU
270
n
270
GLU
270
A
PHE
271
n
271
PHE
271
A
LEU
272
n
272
LEU
272
A
ASP
273
n
273
ASP
273
A
SER
274
n
274
SER
274
A
ARG
275
n
275
ARG
275
A
PRO
276
n
276
PRO
276
A
GLU
277
n
277
GLU
277
A
VAL
278
n
278
VAL
278
A
SER
279
n
279
SER
279
A
THR
280
n
280
THR
280
A
VAL
281
n
281
VAL
281
A
LEU
282
n
282
LEU
282
A
TYR
283
n
283
TYR
283
A
PRO
284
n
284
PRO
284
A
GLY
285
n
285
GLY
285
A
LEU
286
n
286
LEU
286
A
LYS
287
n
287
LYS
287
A
ASN
288
n
288
ASN
288
A
HIS
289
n
289
HIS
289
A
PRO
290
n
290
PRO
290
A
GLY
291
n
291
GLY
291
A
HIS
292
n
292
HIS
292
A
GLU
293
n
293
GLU
293
A
VAL
294
n
294
VAL
294
A
ALA
295
n
295
ALA
295
A
ALA
296
n
296
ALA
296
A
LYS
297
n
297
LYS
297
A
GLN
298
n
298
GLN
298
A
MET
299
n
299
MET
299
A
LYS
300
n
300
LYS
300
A
ARG
301
n
301
ARG
301
A
PHE
302
n
302
PHE
302
A
GLY
303
n
303
GLY
303
A
GLY
304
n
304
GLY
304
A
MET
305
n
305
MET
305
A
ILE
306
n
306
ILE
306
A
SER
307
n
307
SER
307
A
VAL
308
n
308
VAL
308
A
ARG
309
n
309
ARG
309
A
PHE
310
n
310
PHE
310
A
ALA
311
n
311
ALA
311
A
GLY
312
n
312
GLY
312
A
GLY
313
n
313
GLY
313
A
GLU
314
n
314
GLU
314
A
GLU
315
n
315
GLU
315
A
ALA
316
n
316
ALA
316
A
ALA
317
n
317
ALA
317
A
LYS
318
n
318
LYS
318
A
LYS
319
n
319
LYS
319
A
PHE
320
n
320
PHE
320
A
CYS
321
n
321
CYS
321
A
THR
322
n
322
THR
322
A
SER
323
n
323
SER
323
A
THR
324
n
324
THR
324
A
LYS
325
n
325
LYS
325
A
LEU
326
n
326
LEU
326
A
ILE
327
n
327
ILE
327
A
CYS
328
n
328
CYS
328
A
LEU
329
n
329
LEU
329
A
ALA
330
n
330
ALA
330
A
GLU
331
n
331
GLU
331
A
SER
332
n
332
SER
332
A
LEU
333
n
333
LEU
333
A
GLY
334
n
334
GLY
334
A
GLY
335
n
335
GLY
335
A
VAL
336
n
336
VAL
336
A
GLU
337
n
337
GLU
337
A
SER
338
n
338
SER
338
A
LEU
339
n
339
LEU
339
A
LEU
340
n
340
LEU
340
A
GLU
341
n
341
GLU
341
A
HIS
342
n
342
HIS
342
A
PRO
343
n
343
PRO
343
A
ALA
344
n
344
ALA
344
A
THR
345
n
345
THR
345
A
MET
346
n
346
MET
346
A
THR
347
n
347
THR
347
A
HIS
348
n
348
HIS
348
A
GLN
349
n
349
GLN
349
A
SER
350
n
350
SER
350
A
ALA
351
n
351
ALA
351
A
ALA
352
n
352
ALA
352
A
GLY
353
n
353
GLY
353
A
SER
354
n
354
SER
354
A
GLN
355
n
355
GLN
355
A
LEU
356
n
356
LEU
356
A
GLU
357
n
357
GLU
357
A
VAL
358
n
358
VAL
358
A
PRO
359
n
359
PRO
359
A
ARG
360
n
360
ARG
360
A
ASP
361
n
361
ASP
361
A
LEU
362
n
362
LEU
362
A
VAL
363
n
363
VAL
363
A
ARG
364
n
364
ARG
364
A
ILE
365
n
365
ILE
365
A
SER
366
n
366
SER
366
A
ILE
367
n
367
ILE
367
A
GLY
368
n
368
GLY
368
A
ILE
369
n
369
ILE
369
A
GLU
370
n
370
GLU
370
A
ASP
371
n
371
ASP
371
A
ILE
372
n
372
ILE
372
A
GLU
373
n
373
GLU
373
A
ASP
374
n
374
ASP
374
A
LEU
375
n
375
LEU
375
A
LEU
376
n
376
LEU
376
A
ALA
377
n
377
ALA
377
A
ASP
378
n
378
ASP
378
A
VAL
379
n
379
VAL
379
A
GLU
380
n
380
GLU
380
A
GLN
381
n
381
GLN
381
A
ALA
382
n
382
ALA
382
A
LEU
383
n
383
LEU
383
A
ASN
384
n
384
ASN
384
A
ASN
385
n
385
ASN
385
A
LEU
386
n
386
LEU
386
A
ALA
387
n
387
HIS
387
A
n
388
388
A
n
389
389
A
n
390
390
A
n
391
391
A
n
392
392
A
author_and_software_defined_assembly
PISA
4
tetrameric
26700
-169
43800
A
PHE
38
A
O
PHE
38
1_555
A
MG
406
G
MG
MG
1_555
A
GLN
40
A
OE1
GLN
40
1_555
111.7
A
PHE
38
A
O
PHE
38
1_555
A
MG
406
G
MG
MG
1_555
A
GLU
51
A
O
GLU
51
1_555
99.2
A
GLN
40
A
OE1
GLN
40
1_555
A
MG
406
G
MG
MG
1_555
A
GLU
51
A
O
GLU
51
1_555
121.3
A
GLU
71
A
O
GLU
71
1_555
A
MG
405
F
MG
MG
1_555
A
GLU
71
A
OE1
GLU
71
1_555
94.5
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_555
x,-y+1/2,-z+1/2
crystal symmetry operation
0.0000000000
74.9255000000
80.9290000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
11_555
-x+1/2,y,-z+1/2
crystal symmetry operation
29.2870000000
0.0000000000
80.9290000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
14_555
-x+1/2,-y+1/2,z
crystal symmetry operation
29.2870000000
74.9255000000
0.0000000000
A
N
ALA
42
A
N
ALA
42
A
O
GLU
45
A
O
GLU
45
A
N
PHE
79
A
N
PHE
79
A
O
GLY
215
A
O
GLY
215
A
O
LEU
216
A
O
LEU
216
A
N
HIS
200
A
N
HIS
200
A
O
LEU
199
A
O
LEU
199
A
N
VAL
178
A
N
VAL
178
A
O
ASP
179
A
O
ASP
179
A
N
VAL
149
A
N
VAL
149
A
O
TRP
148
A
O
TRP
148
A
N
VAL
101
A
N
VAL
101
A
N
LEU
102
A
N
LEU
102
A
O
THR
126
A
O
THR
126
A
N
LEU
282
A
N
LEU
282
A
O
SER
307
A
O
SER
307
A
N
ILE
306
A
N
ILE
306
A
O
ILE
365
A
O
ILE
365
A
O
SER
366
A
O
SER
366
A
N
LEU
339
A
N
LEU
339
A
O
LEU
340
A
O
LEU
340
A
N
CYS
328
A
N
CYS
328
1
A
CG
HIS
387
A
CG
HIS
387
1
Y
1
A
ND1
HIS
387
A
ND1
HIS
387
1
Y
1
A
CD2
HIS
387
A
CD2
HIS
387
1
Y
1
A
CE1
HIS
387
A
CE1
HIS
387
1
Y
1
A
NE2
HIS
387
A
NE2
HIS
387
1
Y
1
A
MET
1
A
MET
1
1
Y
1
A
SER
2
A
SER
2
1
Y
1
A
HIS
388
A
HIS
388
1
Y
1
A
HIS
389
A
HIS
389
1
Y
1
A
HIS
390
A
HIS
390
1
Y
1
A
HIS
391
A
HIS
391
1
Y
1
A
HIS
392
A
HIS
392
1
Y
1
A
A
NH1
O
ARG
HOH
112
501
1.96
1
A
A
OE1
O1
GLU
GOL
227
404
2.14
1
A
A
O
O
HOH
HOH
715
723
2.15
1
4.41
0.70
120.80
125.21
A
A
A
CB
CG
CD1
PHE
PHE
PHE
90
90
90
N
1
6.59
0.90
119.80
126.39
A
A
A
CZ
CE2
CD2
TYR
TYR
TYR
107
107
107
N
1
5.49
0.90
118.30
123.79
A
A
A
CB
CG
OD1
ASP
ASP
ASP
161
161
161
N
1
15.33
2.30
111.70
127.03
A
A
A
CD
CE
NZ
LYS
LYS
LYS
204
204
204
N
1
-5.53
0.90
118.30
112.77
A
A
A
CB
CG
OD2
ASP
ASP
ASP
263
263
263
N
1
-3.74
0.50
120.30
116.56
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
309
309
309
N
1
10.59
1.70
111.00
121.59
A
A
A
CB
CG
CD2
LEU
LEU
LEU
340
340
340
N
1
-4.11
0.50
120.30
116.19
A
A
A
NE
CZ
NH1
ARG
ARG
ARG
360
360
360
N
1
4.21
0.50
120.30
124.51
A
A
A
NE
CZ
NH2
ARG
ARG
ARG
360
360
360
N
1
5.41
0.90
118.30
123.71
A
A
A
CB
CG
OD1
ASP
ASP
ASP
361
361
361
N
1
A
A
CB
CG
TYR
TYR
107
107
-0.097
0.015
1.512
1.415
N
1
A
A
CB
CG
GLU
GLU
150
150
-0.135
0.019
1.517
1.382
N
1
A
A
CD
OE1
GLU
GLU
373
373
0.087
0.011
1.252
1.339
N
1
A
TYR
24
-108.16
-84.25
1
A
LYS
48
-154.61
48.72
1
A
GLU
51
-134.56
-47.78
1
A
SER
184
70.69
165.42
1
A
LYS
204
-91.69
-116.68
1
A
SER
332
82.54
179.25
1
A
MET
346
-126.34
-99.31
65.440
17.9510
8.340
0.3700
-0.0000
0.0000
0.0900
-0.0000
-0.4600
0.9710
0.9620
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY
0.1723
0.1477
0.1490
1.5100
80.9300
2742
52555
5.0000
98.9400
0.9780
0.0370
RANDOM
1
THROUGHOUT
0.000
MOLECULAR REPLACEMENT
0.0650
0.0660
0.8000
0.8000
1.2000
3QHX
1.5100
80.9300
254
3211
23.00
28.45
35
0
2922
385
0.027
0.019
3010
0.002
0.020
2782
2.465
1.970
4087
1.191
3.000
6457
6.241
5.000
384
34.340
24.882
127
11.907
15.000
484
20.267
15.000
13
0.156
0.200
473
0.013
0.021
3355
0.002
0.020
574
0.1940
0.0000
0.1580
1.5490
171
3659
3830
20
93.6000
1.51
80.93
5X5H
55876
0.074
1
42.7
6.6
99.3
0.321
1.51
16.0
1
5.0
98.6
data collection
HKL-2000
refinement
REFMAC
5.8.0158
data extraction
PDB_EXTRACT
3.22
data processing
HKL-2000
phasing
MOLREP
data scaling
HKL-2000
data reduction
HKL
N
Crystal structure of metB from Corynebacterium glutamicum
1
N
N
2
N
N
3
N
N
3
N
N
3
N
N
4
N
N
4
N
N
5
N
N
A
ASP
4
A
ASP
4
HELX_P
A
GLN
8
A
GLN
8
5
AA1
5
A
GLY
9
A
GLY
9
HELX_P
A
ALA
17
A
ALA
17
1
AA2
9
A
ASN
57
A
ASN
57
HELX_P
A
GLU
71
A
GLU
71
1
AA3
15
A
SER
81
A
SER
81
HELX_P
A
LEU
94
A
LEU
94
1
AA4
14
A
TYR
107
A
TYR
107
HELX_P
A
VAL
117
A
VAL
117
1
AA5
11
A
PHE
118
A
PHE
118
HELX_P
A
GLY
122
A
GLY
122
5
AA6
5
A
VAL
132
A
VAL
132
HELX_P
A
ILE
140
A
ILE
140
1
AA7
9
A
ASP
161
A
ASP
161
HELX_P
A
LEU
168
A
LEU
168
1
AA8
8
A
ALA
183
A
ALA
183
HELX_P
A
GLN
188
A
GLN
188
1
AA9
6
A
GLN
189
A
GLN
189
HELX_P
A
GLY
194
A
GLY
194
5
AB1
6
A
ASP
221
A
ASP
221
HELX_P
A
GLY
236
A
GLY
236
1
AB2
16
A
SER
240
A
SER
240
HELX_P
A
LYS
252
A
LYS
252
1
AB3
13
A
THR
253
A
THR
253
HELX_P
A
SER
274
A
SER
274
1
AB4
22
A
GLY
291
A
GLY
291
HELX_P
A
MET
299
A
MET
299
1
AB5
9
A
GLY
312
A
GLY
312
HELX_P
A
THR
324
A
THR
324
1
AB6
13
A
HIS
348
A
HIS
348
HELX_P
A
ALA
352
A
ALA
352
5
AB7
5
A
ASP
371
A
ASP
371
HELX_P
A
ASN
385
A
ASN
385
1
AB8
15
covale
1.380
one
A
LYS
204
A
NZ
LYS
204
1_555
A
PLP
401
B
C4A
PLP
1_555
metalc
2.697
A
PHE
38
A
O
PHE
38
1_555
A
MG
406
G
MG
MG
1_555
metalc
2.927
A
GLN
40
A
OE1
GLN
40
1_555
A
MG
406
G
MG
MG
1_555
metalc
2.753
A
GLU
51
A
O
GLU
51
1_555
A
MG
406
G
MG
MG
1_555
metalc
2.753
A
GLU
71
A
O
GLU
71
1_555
A
MG
405
F
MG
MG
1_555
metalc
2.623
A
GLU
71
A
OE1
GLU
71
1_555
A
MG
405
F
MG
MG
1_555
TRANSFERASE
PLP-binding domain, TRANSFERASE
A
THR
151
A
THR
151
1
A
PRO
152
A
PRO
152
-5.29
A
ASN
154
A
ASN
154
1
A
PRO
155
A
PRO
155
13.93
Q79VD9_CORGL
UNP
1
1
Q79VD9
MSFDPNTQGFSTASIHAGYEPDDYYGSINTPIYASTTFAQNAPNELRKGYEYTRVGNPTIVALEQTVAALEGAKYGRAFS
SGMAATDILFRIILKPGDHIVLGNDAYGGTYRLIDTVFTAWGVEYTVVDTSVVEEVKAAIKDNTKLIWVETPTNPALGIT
DIEAVAKLTEGTNAKLVVDNTFASPYLQQPLKLGAHAVLHSTTKYIGGHSDVVGGLVVTNDQEMDEELLFMQGGIGPIPS
VFDAYLTARGLKTLAVRMDRHCDNAEKIAEFLDSRPEVSTVLYPGLKNHPGHEVAAKQMKRFGGMISVRFAGGEEAAKKF
CTSTKLICLAESLGGVESLLEHPATMTHQSAAGSQLEVPRDLVRISIGIEDIEDLLADVEQALNNL
1
386
5X5H
1
386
Q79VD9
A
1
1
386
1
expression tag
HIS
387
5X5H
A
Q79VD9
UNP
387
1
expression tag
HIS
388
5X5H
A
Q79VD9
UNP
388
1
expression tag
HIS
389
5X5H
A
Q79VD9
UNP
389
1
expression tag
HIS
390
5X5H
A
Q79VD9
UNP
390
1
expression tag
HIS
391
5X5H
A
Q79VD9
UNP
391
1
expression tag
HIS
392
5X5H
A
Q79VD9
UNP
392
2
7
5
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
A
GLN
40
A
GLN
40
A
ALA
42
A
ALA
42
A
GLU
45
A
GLU
45
A
LEU
46
A
LEU
46
A
TYR
75
A
TYR
75
A
PHE
79
A
PHE
79
A
GLY
215
A
GLY
215
A
THR
219
A
THR
219
A
ALA
197
A
ALA
197
A
SER
201
A
SER
201
A
LYS
175
A
LYS
175
A
ASP
179
A
ASP
179
A
THR
144
A
THR
144
A
GLU
150
A
GLU
150
A
HIS
99
A
HIS
99
A
GLY
103
A
GLY
103
A
GLU
124
A
GLU
124
A
VAL
128
A
VAL
128
A
VAL
278
A
VAL
278
A
LEU
282
A
LEU
282
A
MET
305
A
MET
305
A
PHE
310
A
PHE
310
A
LEU
362
A
LEU
362
A
SER
366
A
SER
366
A
LEU
339
A
LEU
339
A
GLU
341
A
GLU
341
A
CYS
328
A
CYS
328
A
LEU
329
A
LEU
329
binding site for residue PLP A 401
A
PLP
401
Software
13
binding site for residue GOL A 402
A
GOL
402
Software
8
binding site for residue GOL A 403
A
GOL
403
Software
9
binding site for residue GOL A 404
A
GOL
404
Software
4
binding site for residue MG A 405
A
MG
405
Software
4
binding site for residue MG A 406
A
MG
406
Software
6
A
TYR
52
A
TYR
52
13
11_555
A
ARG
54
A
ARG
54
13
11_555
A
SER
81
A
SER
81
13
1_555
A
GLY
82
A
GLY
82
13
1_555
A
MET
83
A
MET
83
13
1_555
A
TYR
107
A
TYR
107
13
1_555
A
ASN
154
A
ASN
154
13
1_555
A
ASP
179
A
ASP
179
13
1_555
A
PHE
182
A
PHE
182
13
1_555
A
SER
201
A
SER
201
13
1_555
A
THR
203
A
THR
203
13
1_555
A
LYS
204
A
LYS
204
13
1_555
A
GLY
214
A
GLY
214
13
1_555
A
ASP
273
A
ASP
273
8
1_555
A
THR
280
A
THR
280
8
1_555
A
VAL
281
A
VAL
281
8
1_555
A
LEU
286
A
LEU
286
8
1_555
A
ASN
288
A
ASN
288
8
1_555
A
ASN
288
A
ASN
288
8
3_655
A
HOH
586
H
HOH
8
1_555
A
HOH
712
H
HOH
8
1_555
A
ILE
15
A
ILE
15
9
1_555
A
TYR
19
A
TYR
19
9
1_555
A
ILE
28
A
ILE
28
9
1_555
A
ASN
29
A
ASN
29
9
1_555
A
LYS
252
A
LYS
252
9
1_555
A
GLU
337
A
GLU
337
9
14_555
A
HOH
502
H
HOH
9
1_555
A
HOH
508
H
HOH
9
1_555
A
HOH
627
H
HOH
9
1_555
A
ARG
91
A
ARG
91
4
1_555
A
LYS
95
A
LYS
95
4
1_555
A
GLU
227
A
GLU
227
4
1_555
A
HOH
554
H
HOH
4
1_555
A
GLU
71
A
GLU
71
4
1_555
A
GLN
189
A
GLN
189
4
1_555
A
PRO
190
A
PRO
190
4
1_555
A
LEU
191
A
LEU
191
4
1_555
A
THR
37
A
THR
37
6
1_555
A
PHE
38
A
PHE
38
6
1_555
A
GLN
40
A
GLN
40
6
1_555
A
GLU
51
A
GLU
51
6
1_555
A
ALA
330
A
ALA
330
6
11_555
A
GLU
331
A
GLU
331
6
11_555
22
F 2 2 2