data_5XK0 # _entry.id 5XK0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 5XK0 pdb_00005xk0 10.2210/pdb5xk0/pdb WWPDB D_1300003666 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 5XK0 _pdbx_database_status.recvd_initial_deposition_date 2017-05-04 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Liu, H.H.' 1 ? 'Gan, J.H.' 2 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country GE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Angew. Chem. Int. Ed. Engl.' _citation.journal_id_ASTM ACIEAY _citation.journal_id_CSD 0179 _citation.journal_id_ISSN 1521-3773 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 56 _citation.language ? _citation.page_first 9430 _citation.page_last 9434 _citation.title 'A DNA Structure Containing AgI -Mediated G:G and C:C Base Pairs' _citation.year 2017 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/anie.201704891 _citation.pdbx_database_id_PubMed 28635152 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Liu, H.H.' 1 ? primary 'Shen, F.S.' 2 ? primary 'Haruehanroengra, P.' 3 ? primary 'Yao, Q.Q.' 4 ? primary 'Cheng, Y.S.' 5 ? primary 'Chen, Y.Q.' 6 ? primary 'Yang, C.' 7 ? primary 'Zhang, J.' 8 ? primary 'Wu, B.X.' 9 ? primary 'Luo, Q.' 10 ? primary 'Cui, R.X.' 11 ? primary 'Li, J.X.' 12 ? primary 'Ma, J.B.' 13 ? primary 'Sheng, J.' 14 ? primary 'Gan, J.H.' 15 ? # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 5XK0 _cell.details ? _cell.formula_units_Z ? _cell.length_a 42.012 _cell.length_a_esd ? _cell.length_b 42.012 _cell.length_b_esd ? _cell.length_c 25.016 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 5XK0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*CP*CP*CP*GP*AP*GP*C)-3') ; 2412.594 1 ? ? ? ? 2 water nat water 18.015 36 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DC)(DC)(DG)(DA)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCCCGAGC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DC n 1 4 DC n 1 5 DG n 1 6 DA n 1 7 DG n 1 8 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 8 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 5XK0 _struct_ref.pdbx_db_accession 5XK0 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 5XK0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 5XK0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 5XK0 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.29 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 46.23 _exptl_crystal.description diamond _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 6 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '10% v/v MPD, 40mM Sodium cacodylate pH 6.0, 12mM Spermine tetra-HCl, 80mM KCl, 20mM MgCl2' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'DECTRIS PILATUS3 S 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2016-11-10 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'SSRF BEAMLINE BL19U1' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline BL19U1 _diffrn_source.pdbx_synchrotron_site SSRF # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 5XK0 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 1.45 _reflns.d_resolution_low 30 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 4199 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 98.6 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 19.8 _reflns.pdbx_Rmerge_I_obs 0.11 _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 82.3 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 1.45 _reflns_shell.d_res_low 1.50 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 12.9 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 358 _reflns_shell.percent_possible_all 87.5 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.358 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 13.8 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 5XK0 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 1.451 _refine.ls_d_res_low 29.707 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 4199 _refine.ls_number_reflns_R_free 190 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 98.41 _refine.ls_percent_reflns_R_free 4.52 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1810 _refine.ls_R_factor_R_free 0.1956 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.1803 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.42 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'FOURIER SYNTHESIS' _refine.pdbx_starting_model 5WSP _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 18.60 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.14 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 160 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 36 _refine_hist.number_atoms_total 196 _refine_hist.d_res_high 1.451 _refine_hist.d_res_low 29.707 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.006 ? 179 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 0.919 ? 274 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 14.560 ? 76 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.041 ? 31 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.009 ? 8 ? f_plane_restr ? ? # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.d_res_high 1.4513 _refine_ls_shell.d_res_low 1.50 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.number_reflns_R_free 190 _refine_ls_shell.number_reflns_R_work 345 _refine_ls_shell.percent_reflns_obs 98.00 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.R_factor_R_free 0.1956 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work 0.1823 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_fsc_free ? # _struct.entry_id 5XK0 _struct.title 'Structure of 8-mer DNA2' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 5XK0 _struct_keywords.text 'DNA, duplex' _struct_keywords.pdbx_keywords DNA # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 7 N1 ? ? A DC 2 A DG 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 7 O6 ? ? A DC 2 A DG 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 7 N2 ? ? A DC 2 A DG 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 A DA 6 N6 ? ? A DC 3 A DA 6 7_555 ? ? ? ? ? ? 'DC-DA MISPAIR' ? ? ? hydrog8 hydrog ? ? A DC 4 N3 ? ? ? 1_555 A DG 5 N1 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 A DG 5 O6 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 A DG 5 N2 ? ? A DC 4 A DG 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 5 N1 ? ? ? 1_555 A DC 4 N3 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 5 N2 ? ? ? 1_555 A DC 4 O2 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 5 O6 ? ? ? 1_555 A DC 4 N4 ? ? A DG 5 A DC 4 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DC 3 N3 ? ? A DA 6 A DC 3 7_555 ? ? ? ? ? ? 'DA-DC MISPAIR' ? ? ? hydrog15 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 7 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 7 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 7 A DC 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 5XK0 _atom_sites.fract_transf_matrix[1][1] 0.023803 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023803 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.039974 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 7.127 -2.167 -5.260 1.00 24.09 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 6.922 -3.554 -4.983 1.00 24.51 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 8.124 -4.155 -4.268 1.00 20.95 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 9.309 -4.048 -5.101 1.00 21.20 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 8.511 -3.484 -2.956 1.00 22.10 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 7.772 -4.043 -1.902 1.00 27.57 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 9.972 -3.862 -2.835 1.00 21.26 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 10.431 -3.760 -4.286 1.00 20.59 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 10.954 -2.452 -4.668 1.00 19.81 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 10.319 -1.499 -5.427 1.00 19.85 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 11.052 -0.439 -5.644 1.00 20.47 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 12.254 -0.719 -5.002 1.00 18.88 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 13.438 0.051 -4.888 1.00 20.36 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 13.680 1.171 -5.362 1.00 20.42 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 14.411 -0.606 -4.144 1.00 19.97 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 14.264 -1.856 -3.584 1.00 21.40 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 15.314 -2.333 -2.902 1.00 23.93 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 13.164 -2.588 -3.681 1.00 19.97 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 12.203 -1.959 -4.398 1.00 19.03 ? 1 DG A C4 1 ATOM 20 P P . DC A 1 2 ? 7.338 -3.131 -0.655 1.00 28.54 ? 2 DC A P 1 ATOM 21 O OP1 . DC A 1 2 ? 6.513 -3.971 0.236 1.00 34.22 ? 2 DC A OP1 1 ATOM 22 O OP2 . DC A 1 2 ? 6.835 -1.857 -1.186 1.00 28.59 ? 2 DC A OP2 1 ATOM 23 O "O5'" . DC A 1 2 ? 8.706 -2.695 0.053 1.00 29.80 ? 2 DC A "O5'" 1 ATOM 24 C "C5'" . DC A 1 2 ? 9.341 -3.537 0.994 1.00 31.50 ? 2 DC A "C5'" 1 ATOM 25 C "C4'" . DC A 1 2 ? 10.791 -3.117 1.182 1.00 28.47 ? 2 DC A "C4'" 1 ATOM 26 O "O4'" . DC A 1 2 ? 11.348 -2.771 -0.106 1.00 27.00 ? 2 DC A "O4'" 1 ATOM 27 C "C3'" . DC A 1 2 ? 11.026 -1.867 2.021 1.00 26.70 ? 2 DC A "C3'" 1 ATOM 28 O "O3'" . DC A 1 2 ? 11.041 -2.186 3.395 1.00 28.01 ? 2 DC A "O3'" 1 ATOM 29 C "C2'" . DC A 1 2 ? 12.416 -1.473 1.563 1.00 25.71 ? 2 DC A "C2'" 1 ATOM 30 C "C1'" . DC A 1 2 ? 12.370 -1.810 0.077 1.00 25.14 ? 2 DC A "C1'" 1 ATOM 31 N N1 . DC A 1 2 ? 12.106 -0.631 -0.784 1.00 24.24 ? 2 DC A N1 1 ATOM 32 C C2 . DC A 1 2 ? 13.162 0.246 -1.035 1.00 22.70 ? 2 DC A C2 1 ATOM 33 O O2 . DC A 1 2 ? 14.255 -0.001 -0.531 1.00 24.17 ? 2 DC A O2 1 ATOM 34 N N3 . DC A 1 2 ? 12.960 1.322 -1.834 1.00 20.50 ? 2 DC A N3 1 ATOM 35 C C4 . DC A 1 2 ? 11.757 1.546 -2.356 1.00 20.03 ? 2 DC A C4 1 ATOM 36 N N4 . DC A 1 2 ? 11.607 2.631 -3.136 1.00 21.09 ? 2 DC A N4 1 ATOM 37 C C5 . DC A 1 2 ? 10.650 0.661 -2.106 1.00 22.20 ? 2 DC A C5 1 ATOM 38 C C6 . DC A 1 2 ? 10.868 -0.403 -1.315 1.00 24.42 ? 2 DC A C6 1 ATOM 39 P P . DC A 1 3 ? 10.695 -1.060 4.491 1.00 30.68 ? 3 DC A P 1 ATOM 40 O OP1 . DC A 1 3 ? 10.709 -1.743 5.801 1.00 35.85 ? 3 DC A OP1 1 ATOM 41 O OP2 . DC A 1 3 ? 9.487 -0.358 4.031 1.00 31.90 ? 3 DC A OP2 1 ATOM 42 O "O5'" . DC A 1 3 ? 11.904 -0.004 4.412 1.00 27.91 ? 3 DC A "O5'" 1 ATOM 43 C "C5'" . DC A 1 3 ? 13.202 -0.350 4.856 1.00 29.26 ? 3 DC A "C5'" 1 ATOM 44 C "C4'" . DC A 1 3 ? 14.180 0.748 4.493 1.00 25.79 ? 3 DC A "C4'" 1 ATOM 45 O "O4'" . DC A 1 3 ? 14.184 0.912 3.062 1.00 26.80 ? 3 DC A "O4'" 1 ATOM 46 C "C3'" . DC A 1 3 ? 13.824 2.124 5.035 1.00 27.23 ? 3 DC A "C3'" 1 ATOM 47 O "O3'" . DC A 1 3 ? 14.342 2.277 6.335 1.00 30.88 ? 3 DC A "O3'" 1 ATOM 48 C "C2'" . DC A 1 3 ? 14.525 3.043 4.053 1.00 23.91 ? 3 DC A "C2'" 1 ATOM 49 C "C1'" . DC A 1 3 ? 14.349 2.285 2.744 1.00 22.12 ? 3 DC A "C1'" 1 ATOM 50 N N1 . DC A 1 3 ? 13.192 2.735 1.927 1.00 21.94 ? 3 DC A N1 1 ATOM 51 C C2 . DC A 1 3 ? 13.368 3.815 1.077 1.00 20.04 ? 3 DC A C2 1 ATOM 52 O O2 . DC A 1 3 ? 14.466 4.366 1.062 1.00 22.32 ? 3 DC A O2 1 ATOM 53 N N3 . DC A 1 3 ? 12.340 4.216 0.288 1.00 20.66 ? 3 DC A N3 1 ATOM 54 C C4 . DC A 1 3 ? 11.173 3.580 0.346 1.00 22.50 ? 3 DC A C4 1 ATOM 55 N N4 . DC A 1 3 ? 10.184 4.013 -0.444 1.00 23.93 ? 3 DC A N4 1 ATOM 56 C C5 . DC A 1 3 ? 10.969 2.465 1.215 1.00 21.84 ? 3 DC A C5 1 ATOM 57 C C6 . DC A 1 3 ? 11.998 2.074 1.978 1.00 22.97 ? 3 DC A C6 1 ATOM 58 P P . DC A 1 4 ? 13.687 3.341 7.342 1.00 31.16 ? 4 DC A P 1 ATOM 59 O OP1 . DC A 1 4 ? 14.270 3.081 8.678 1.00 36.72 ? 4 DC A OP1 1 ATOM 60 O OP2 . DC A 1 4 ? 12.222 3.420 7.147 1.00 31.06 ? 4 DC A OP2 1 ATOM 61 O "O5'" . DC A 1 4 ? 14.193 4.753 6.803 1.00 27.38 ? 4 DC A "O5'" 1 ATOM 62 C "C5'" . DC A 1 4 ? 15.556 5.092 6.929 1.00 29.26 ? 4 DC A "C5'" 1 ATOM 63 C "C4'" . DC A 1 4 ? 15.814 6.420 6.265 1.00 24.42 ? 4 DC A "C4'" 1 ATOM 64 O "O4'" . DC A 1 4 ? 15.629 6.286 4.841 1.00 23.40 ? 4 DC A "O4'" 1 ATOM 65 C "C3'" . DC A 1 4 ? 14.854 7.522 6.662 1.00 23.18 ? 4 DC A "C3'" 1 ATOM 66 O "O3'" . DC A 1 4 ? 15.253 8.082 7.919 1.00 25.92 ? 4 DC A "O3'" 1 ATOM 67 C "C2'" . DC A 1 4 ? 15.030 8.491 5.501 1.00 22.60 ? 4 DC A "C2'" 1 ATOM 68 C "C1'" . DC A 1 4 ? 15.178 7.525 4.321 1.00 22.08 ? 4 DC A "C1'" 1 ATOM 69 N N1 . DC A 1 4 ? 13.907 7.317 3.537 1.00 20.32 ? 4 DC A N1 1 ATOM 70 C C2 . DC A 1 4 ? 13.650 8.154 2.463 1.00 19.39 ? 4 DC A C2 1 ATOM 71 O O2 . DC A 1 4 ? 14.474 9.035 2.193 1.00 20.54 ? 4 DC A O2 1 ATOM 72 N N3 . DC A 1 4 ? 12.506 7.981 1.745 1.00 17.58 ? 4 DC A N3 1 ATOM 73 C C4 . DC A 1 4 ? 11.636 7.043 2.092 1.00 18.43 ? 4 DC A C4 1 ATOM 74 N N4 . DC A 1 4 ? 10.528 6.917 1.351 1.00 20.40 ? 4 DC A N4 1 ATOM 75 C C5 . DC A 1 4 ? 11.871 6.176 3.206 1.00 22.01 ? 4 DC A C5 1 ATOM 76 C C6 . DC A 1 4 ? 13.013 6.345 3.891 1.00 20.90 ? 4 DC A C6 1 ATOM 77 P P . DG A 1 5 ? 14.335 9.169 8.662 1.00 27.49 ? 5 DG A P 1 ATOM 78 O OP1 . DG A 1 5 ? 15.007 9.473 9.942 1.00 30.00 ? 5 DG A OP1 1 ATOM 79 O OP2 . DG A 1 5 ? 12.926 8.722 8.671 1.00 29.03 ? 5 DG A OP2 1 ATOM 80 O "O5'" . DG A 1 5 ? 14.459 10.435 7.705 1.00 23.93 ? 5 DG A "O5'" 1 ATOM 81 C "C5'" . DG A 1 5 ? 13.361 11.283 7.471 1.00 23.44 ? 5 DG A "C5'" 1 ATOM 82 C "C4'" . DG A 1 5 ? 13.719 12.249 6.376 1.00 21.40 ? 5 DG A "C4'" 1 ATOM 83 O "O4'" . DG A 1 5 ? 13.887 11.507 5.138 1.00 20.09 ? 5 DG A "O4'" 1 ATOM 84 C "C3'" . DG A 1 5 ? 12.669 13.286 6.058 1.00 21.05 ? 5 DG A "C3'" 1 ATOM 85 O "O3'" . DG A 1 5 ? 12.795 14.408 6.932 1.00 23.50 ? 5 DG A "O3'" 1 ATOM 86 C "C2'" . DG A 1 5 ? 13.030 13.639 4.627 1.00 20.39 ? 5 DG A "C2'" 1 ATOM 87 C "C1'" . DG A 1 5 ? 13.343 12.255 4.068 1.00 19.30 ? 5 DG A "C1'" 1 ATOM 88 N N9 . DG A 1 5 ? 12.159 11.556 3.560 1.00 17.79 ? 5 DG A N9 1 ATOM 89 C C8 . DG A 1 5 ? 11.549 10.443 4.090 1.00 17.89 ? 5 DG A C8 1 ATOM 90 N N7 . DG A 1 5 ? 10.503 10.048 3.406 1.00 18.26 ? 5 DG A N7 1 ATOM 91 C C5 . DG A 1 5 ? 10.421 10.969 2.363 1.00 16.36 ? 5 DG A C5 1 ATOM 92 C C6 . DG A 1 5 ? 9.497 11.064 1.299 1.00 17.99 ? 5 DG A C6 1 ATOM 93 O O6 . DG A 1 5 ? 8.531 10.326 1.058 1.00 20.71 ? 5 DG A O6 1 ATOM 94 N N1 . DG A 1 5 ? 9.781 12.150 0.465 1.00 15.92 ? 5 DG A N1 1 ATOM 95 C C2 . DG A 1 5 ? 10.816 13.031 0.640 1.00 17.18 ? 5 DG A C2 1 ATOM 96 N N2 . DG A 1 5 ? 10.928 14.018 -0.274 1.00 19.65 ? 5 DG A N2 1 ATOM 97 N N3 . DG A 1 5 ? 11.691 12.951 1.637 1.00 17.58 ? 5 DG A N3 1 ATOM 98 C C4 . DG A 1 5 ? 11.430 11.903 2.452 1.00 16.84 ? 5 DG A C4 1 ATOM 99 P P . DA A 1 6 ? 11.503 15.312 7.242 1.00 24.66 ? 6 DA A P 1 ATOM 100 O OP1 . DA A 1 6 ? 11.862 16.209 8.357 1.00 28.97 ? 6 DA A OP1 1 ATOM 101 O OP2 . DA A 1 6 ? 10.328 14.425 7.364 1.00 29.86 ? 6 DA A OP2 1 ATOM 102 O "O5'" . DA A 1 6 ? 11.272 16.161 5.916 1.00 21.77 ? 6 DA A "O5'" 1 ATOM 103 C "C5'" . DA A 1 6 ? 12.228 17.130 5.525 1.00 22.52 ? 6 DA A "C5'" 1 ATOM 104 C "C4'" . DA A 1 6 ? 11.840 17.752 4.200 1.00 21.93 ? 6 DA A "C4'" 1 ATOM 105 O "O4'" . DA A 1 6 ? 11.782 16.722 3.185 1.00 21.00 ? 6 DA A "O4'" 1 ATOM 106 C "C3'" . DA A 1 6 ? 10.456 18.364 4.164 1.00 22.16 ? 6 DA A "C3'" 1 ATOM 107 O "O3'" . DA A 1 6 ? 10.482 19.664 4.720 1.00 24.42 ? 6 DA A "O3'" 1 ATOM 108 C "C2'" . DA A 1 6 ? 10.201 18.391 2.666 1.00 21.06 ? 6 DA A "C2'" 1 ATOM 109 C "C1'" . DA A 1 6 ? 10.735 17.022 2.278 1.00 22.56 ? 6 DA A "C1'" 1 ATOM 110 N N9 . DA A 1 6 ? 9.747 15.959 2.362 1.00 19.37 ? 6 DA A N9 1 ATOM 111 C C8 . DA A 1 6 ? 9.698 14.947 3.274 1.00 18.88 ? 6 DA A C8 1 ATOM 112 N N7 . DA A 1 6 ? 8.706 14.109 3.084 1.00 19.50 ? 6 DA A N7 1 ATOM 113 C C5 . DA A 1 6 ? 8.077 14.600 1.953 1.00 19.08 ? 6 DA A C5 1 ATOM 114 C C6 . DA A 1 6 ? 6.951 14.171 1.237 1.00 19.04 ? 6 DA A C6 1 ATOM 115 N N6 . DA A 1 6 ? 6.243 13.088 1.554 1.00 19.70 ? 6 DA A N6 1 ATOM 116 N N1 . DA A 1 6 ? 6.585 14.909 0.165 1.00 17.50 ? 6 DA A N1 1 ATOM 117 C C2 . DA A 1 6 ? 7.290 15.998 -0.145 1.00 17.43 ? 6 DA A C2 1 ATOM 118 N N3 . DA A 1 6 ? 8.360 16.499 0.455 1.00 20.23 ? 6 DA A N3 1 ATOM 119 C C4 . DA A 1 6 ? 8.705 15.744 1.503 1.00 19.08 ? 6 DA A C4 1 ATOM 120 P P . DG A 1 7 ? 9.208 20.225 5.517 1.00 23.42 ? 7 DG A P 1 ATOM 121 O OP1 . DG A 1 7 ? 9.599 21.561 6.014 1.00 26.99 ? 7 DG A OP1 1 ATOM 122 O OP2 . DG A 1 7 ? 8.677 19.211 6.454 1.00 26.04 ? 7 DG A OP2 1 ATOM 123 O "O5'" . DG A 1 7 ? 8.105 20.393 4.378 1.00 22.93 ? 7 DG A "O5'" 1 ATOM 124 C "C5'" . DG A 1 7 ? 8.323 21.296 3.306 1.00 23.66 ? 7 DG A "C5'" 1 ATOM 125 C "C4'" . DG A 1 7 ? 7.229 21.142 2.271 1.00 21.92 ? 7 DG A "C4'" 1 ATOM 126 O "O4'" . DG A 1 7 ? 7.267 19.803 1.740 1.00 21.66 ? 7 DG A "O4'" 1 ATOM 127 C "C3'" . DG A 1 7 ? 5.821 21.317 2.810 1.00 20.30 ? 7 DG A "C3'" 1 ATOM 128 O "O3'" . DG A 1 7 ? 5.476 22.668 2.731 1.00 23.14 ? 7 DG A "O3'" 1 ATOM 129 C "C2'" . DG A 1 7 ? 4.990 20.484 1.843 1.00 22.99 ? 7 DG A "C2'" 1 ATOM 130 C "C1'" . DG A 1 7 ? 5.947 19.345 1.512 1.00 20.87 ? 7 DG A "C1'" 1 ATOM 131 N N9 . DG A 1 7 ? 5.737 18.128 2.283 1.00 19.23 ? 7 DG A N9 1 ATOM 132 C C8 . DG A 1 7 ? 6.494 17.653 3.328 1.00 20.45 ? 7 DG A C8 1 ATOM 133 N N7 . DG A 1 7 ? 6.068 16.506 3.795 1.00 21.15 ? 7 DG A N7 1 ATOM 134 C C5 . DG A 1 7 ? 4.964 16.203 2.999 1.00 18.42 ? 7 DG A C5 1 ATOM 135 C C6 . DG A 1 7 ? 4.094 15.084 3.021 1.00 20.17 ? 7 DG A C6 1 ATOM 136 O O6 . DG A 1 7 ? 4.129 14.092 3.769 1.00 20.51 ? 7 DG A O6 1 ATOM 137 N N1 . DG A 1 7 ? 3.103 15.181 2.041 1.00 21.81 ? 7 DG A N1 1 ATOM 138 C C2 . DG A 1 7 ? 2.977 16.224 1.151 1.00 23.25 ? 7 DG A C2 1 ATOM 139 N N2 . DG A 1 7 ? 1.951 16.155 0.284 1.00 23.03 ? 7 DG A N2 1 ATOM 140 N N3 . DG A 1 7 ? 3.788 17.268 1.118 1.00 21.24 ? 7 DG A N3 1 ATOM 141 C C4 . DG A 1 7 ? 4.751 17.190 2.068 1.00 18.36 ? 7 DG A C4 1 ATOM 142 P P . DC A 1 8 ? 4.379 23.287 3.706 1.00 25.54 ? 8 DC A P 1 ATOM 143 O OP1 . DC A 1 8 ? 4.365 24.748 3.462 1.00 25.82 ? 8 DC A OP1 1 ATOM 144 O OP2 . DC A 1 8 ? 4.650 22.790 5.074 1.00 32.80 ? 8 DC A OP2 1 ATOM 145 O "O5'" . DC A 1 8 ? 2.995 22.636 3.231 1.00 28.62 ? 8 DC A "O5'" 1 ATOM 146 C "C5'" . DC A 1 8 ? 2.428 23.005 1.977 1.00 29.06 ? 8 DC A "C5'" 1 ATOM 147 C "C4'" . DC A 1 8 ? 1.094 22.305 1.741 1.00 26.53 ? 8 DC A "C4'" 1 ATOM 148 O "O4'" . DC A 1 8 ? 1.291 20.871 1.803 1.00 26.46 ? 8 DC A "O4'" 1 ATOM 149 C "C3'" . DC A 1 8 ? -0.014 22.646 2.739 1.00 38.59 ? 8 DC A "C3'" 1 ATOM 150 O "O3'" . DC A 1 8 ? -1.225 22.941 2.054 1.00 41.26 ? 8 DC A "O3'" 1 ATOM 151 C "C2'" . DC A 1 8 ? -0.153 21.385 3.582 1.00 34.41 ? 8 DC A "C2'" 1 ATOM 152 C "C1'" . DC A 1 8 ? 0.313 20.290 2.635 1.00 30.75 ? 8 DC A "C1'" 1 ATOM 153 N N1 . DC A 1 8 ? 0.935 19.163 3.367 1.00 26.37 ? 8 DC A N1 1 ATOM 154 C C2 . DC A 1 8 ? 0.332 17.898 3.352 1.00 25.30 ? 8 DC A C2 1 ATOM 155 O O2 . DC A 1 8 ? -0.697 17.724 2.689 1.00 27.20 ? 8 DC A O2 1 ATOM 156 N N3 . DC A 1 8 ? 0.904 16.898 4.054 1.00 22.68 ? 8 DC A N3 1 ATOM 157 C C4 . DC A 1 8 ? 2.018 17.127 4.762 1.00 22.67 ? 8 DC A C4 1 ATOM 158 N N4 . DC A 1 8 ? 2.548 16.106 5.446 1.00 21.53 ? 8 DC A N4 1 ATOM 159 C C5 . DC A 1 8 ? 2.640 18.412 4.795 1.00 21.15 ? 8 DC A C5 1 ATOM 160 C C6 . DC A 1 8 ? 2.061 19.391 4.100 1.00 24.29 ? 8 DC A C6 1 HETATM 161 O O . HOH B 2 . ? 10.776 4.121 5.364 1.00 36.92 ? 101 HOH A O 1 HETATM 162 O O . HOH B 2 . ? 6.028 -0.782 -3.211 1.00 38.08 ? 102 HOH A O 1 HETATM 163 O O . HOH B 2 . ? 4.370 21.029 6.967 1.00 33.58 ? 103 HOH A O 1 HETATM 164 O O . HOH B 2 . ? 9.999 1.674 -6.769 1.00 26.79 ? 104 HOH A O 1 HETATM 165 O O . HOH B 2 . ? 11.246 8.499 6.621 1.00 29.55 ? 105 HOH A O 1 HETATM 166 O O . HOH B 2 . ? 12.361 3.089 -6.686 1.00 28.32 ? 106 HOH A O 1 HETATM 167 O O . HOH B 2 . ? 15.726 -1.913 0.668 1.00 31.58 ? 107 HOH A O 1 HETATM 168 O O . HOH B 2 . ? 8.807 12.566 5.328 1.00 31.77 ? 108 HOH A O 1 HETATM 169 O O . HOH B 2 . ? 5.596 13.071 5.828 1.00 36.42 ? 109 HOH A O 1 HETATM 170 O O . HOH B 2 . ? 6.637 -5.102 2.720 1.00 38.20 ? 110 HOH A O 1 HETATM 171 O O . HOH B 2 . ? 9.089 2.342 4.412 1.00 41.19 ? 111 HOH A O 1 HETATM 172 O O . HOH B 2 . ? 5.956 18.980 6.917 1.00 31.67 ? 112 HOH A O 1 HETATM 173 O O . HOH B 2 . ? 15.625 12.174 10.358 1.00 37.46 ? 113 HOH A O 1 HETATM 174 O O . HOH B 2 . ? 8.541 8.182 4.132 1.00 30.23 ? 114 HOH A O 1 HETATM 175 O O . HOH B 2 . ? 13.805 14.749 1.194 1.00 21.85 ? 115 HOH A O 1 HETATM 176 O O . HOH B 2 . ? 9.090 2.992 -4.372 1.00 34.51 ? 116 HOH A O 1 HETATM 177 O O . HOH B 2 . ? 4.356 -5.320 -1.120 1.00 34.32 ? 117 HOH A O 1 HETATM 178 O O . HOH B 2 . ? 4.729 16.604 7.295 1.00 28.44 ? 118 HOH A O 1 HETATM 179 O O . HOH B 2 . ? 6.078 10.426 2.702 1.00 29.97 ? 119 HOH A O 1 HETATM 180 O O . HOH B 2 . ? 6.833 14.973 6.156 1.00 34.54 ? 120 HOH A O 1 HETATM 181 O O . HOH B 2 . ? 2.587 19.511 -0.438 1.00 30.79 ? 121 HOH A O 1 HETATM 182 O O . HOH B 2 . ? 8.429 5.239 2.545 1.00 32.94 ? 122 HOH A O 1 HETATM 183 O O . HOH B 2 . ? 7.539 2.671 -0.257 1.00 34.67 ? 123 HOH A O 1 HETATM 184 O O . HOH B 2 . ? 7.504 0.215 0.895 1.00 44.45 ? 124 HOH A O 1 HETATM 185 O O . HOH B 2 . ? 7.175 23.391 6.616 1.00 42.94 ? 125 HOH A O 1 HETATM 186 O O . HOH B 2 . ? 1.625 17.751 -2.431 1.00 35.41 ? 126 HOH A O 1 HETATM 187 O O . HOH B 2 . ? 15.010 16.866 2.456 1.00 24.50 ? 127 HOH A O 1 HETATM 188 O O . HOH B 2 . ? 13.514 19.089 1.628 1.00 27.50 ? 128 HOH A O 1 HETATM 189 O O . HOH B 2 . ? 7.633 25.342 2.841 1.00 41.36 ? 129 HOH A O 1 HETATM 190 O O . HOH B 2 . ? 13.282 -4.322 4.809 1.00 36.45 ? 130 HOH A O 1 HETATM 191 O O . HOH B 2 . ? 9.413 10.472 6.910 1.00 36.52 ? 131 HOH A O 1 HETATM 192 O O . HOH B 2 . ? 15.702 -2.572 3.455 1.00 39.39 ? 132 HOH A O 1 HETATM 193 O O . HOH B 2 . ? 9.753 6.281 6.124 1.00 38.77 ? 133 HOH A O 1 HETATM 194 O O . HOH B 2 . ? 3.541 -1.685 -3.432 1.00 44.02 ? 134 HOH A O 1 HETATM 195 O O . HOH B 2 . ? 3.221 -3.682 -4.945 1.00 34.69 ? 135 HOH A O 1 HETATM 196 O O . HOH B 2 . ? 13.235 13.226 11.078 1.00 43.52 ? 136 HOH A O 1 # loop_ _atom_site_anisotrop.id _atom_site_anisotrop.type_symbol _atom_site_anisotrop.pdbx_label_atom_id _atom_site_anisotrop.pdbx_label_alt_id _atom_site_anisotrop.pdbx_label_comp_id _atom_site_anisotrop.pdbx_label_asym_id _atom_site_anisotrop.pdbx_label_seq_id _atom_site_anisotrop.pdbx_PDB_ins_code _atom_site_anisotrop.U[1][1] _atom_site_anisotrop.U[2][2] _atom_site_anisotrop.U[3][3] _atom_site_anisotrop.U[1][2] _atom_site_anisotrop.U[1][3] _atom_site_anisotrop.U[2][3] _atom_site_anisotrop.pdbx_auth_seq_id _atom_site_anisotrop.pdbx_auth_comp_id _atom_site_anisotrop.pdbx_auth_asym_id _atom_site_anisotrop.pdbx_auth_atom_id 1 O "O5'" . DG A 1 ? 0.2689 0.2806 0.3659 -0.0248 0.0122 -0.0050 1 DG A "O5'" 2 C "C5'" . DG A 1 ? 0.2764 0.2727 0.3822 -0.0301 0.0141 -0.0057 1 DG A "C5'" 3 C "C4'" . DG A 1 ? 0.2491 0.2246 0.3224 -0.0270 0.0147 0.0015 1 DG A "C4'" 4 O "O4'" . DG A 1 ? 0.2532 0.2383 0.3141 -0.0174 0.0011 -0.0030 1 DG A "O4'" 5 C "C3'" . DG A 1 ? 0.2770 0.2393 0.3232 -0.0263 0.0254 0.0112 1 DG A "C3'" 6 O "O3'" . DG A 1 ? 0.3567 0.2934 0.3974 -0.0331 0.0425 0.0183 1 DG A "O3'" 7 C "C2'" . DG A 1 ? 0.2780 0.2309 0.2991 -0.0168 0.0133 0.0106 1 DG A "C2'" 8 C "C1'" . DG A 1 ? 0.2561 0.2332 0.2932 -0.0127 0.0014 0.0016 1 DG A "C1'" 9 N N9 . DG A 1 ? 0.2398 0.2359 0.2768 -0.0095 0.0012 0.0001 1 DG A N9 10 C C8 . DG A 1 ? 0.2319 0.2433 0.2791 -0.0106 0.0038 -0.0011 1 DG A C8 11 N N7 . DG A 1 ? 0.2386 0.2589 0.2804 -0.0077 0.0058 -0.0010 1 DG A N7 12 C C5 . DG A 1 ? 0.2219 0.2377 0.2576 -0.0049 0.0030 -0.0024 1 DG A C5 13 C C6 . DG A 1 ? 0.2370 0.2607 0.2760 -0.0023 0.0036 -0.0060 1 DG A C6 14 O O6 . DG A 1 ? 0.2326 0.2659 0.2774 -0.0037 0.0107 -0.0063 1 DG A O6 15 N N1 . DG A 1 ? 0.2348 0.2517 0.2722 0.0028 -0.0055 -0.0110 1 DG A N1 16 C C2 . DG A 1 ? 0.2636 0.2618 0.2875 0.0061 -0.0131 -0.0098 1 DG A C2 17 N N2 . DG A 1 ? 0.3004 0.2896 0.3193 0.0148 -0.0253 -0.0163 1 DG A N2 18 N N3 . DG A 1 ? 0.2513 0.2383 0.2694 0.0017 -0.0095 -0.0040 1 DG A N3 19 C C4 . DG A 1 ? 0.2315 0.2311 0.2605 -0.0042 -0.0019 -0.0017 1 DG A C4 20 P P . DC A 2 ? 0.3790 0.3041 0.4013 -0.0344 0.0606 0.0265 2 DC A P 21 O OP1 . DC A 2 ? 0.4636 0.3565 0.4803 -0.0421 0.0837 0.0339 2 DC A OP1 22 O OP2 . DC A 2 ? 0.3610 0.3178 0.4076 -0.0355 0.0592 0.0215 2 DC A OP2 23 O "O5'" . DC A 2 ? 0.4141 0.3252 0.3929 -0.0219 0.0493 0.0293 2 DC A "O5'" 24 C "C5'" . DC A 2 ? 0.4627 0.3342 0.4000 -0.0142 0.0480 0.0348 2 DC A "C5'" 25 C "C4'" . DC A 2 ? 0.4306 0.3039 0.3474 -0.0003 0.0260 0.0289 2 DC A "C4'" 26 O "O4'" . DC A 2 ? 0.3869 0.2996 0.3393 -0.0017 0.0131 0.0193 2 DC A "O4'" 27 C "C3'" . DC A 2 ? 0.4149 0.2867 0.3129 0.0060 0.0253 0.0286 2 DC A "C3'" 28 O "O3'" . DC A 2 ? 0.4649 0.2893 0.3101 0.0159 0.0300 0.0352 2 DC A "O3'" 29 C "C2'" . DC A 2 ? 0.3908 0.2843 0.3018 0.0142 0.0022 0.0167 2 DC A "C2'" 30 C "C1'" . DC A 2 ? 0.3598 0.2849 0.3104 0.0059 0.0015 0.0128 2 DC A "C1'" 31 N N1 . DC A 2 ? 0.3276 0.2860 0.3073 -0.0009 0.0062 0.0103 2 DC A N1 32 C C2 . DC A 2 ? 0.2981 0.2742 0.2901 0.0028 -0.0021 0.0023 2 DC A C2 33 O O2 . DC A 2 ? 0.3212 0.2901 0.3072 0.0117 -0.0155 -0.0050 2 DC A O2 34 N N3 . DC A 2 ? 0.2563 0.2545 0.2680 -0.0027 0.0045 0.0017 2 DC A N3 35 C C4 . DC A 2 ? 0.2466 0.2503 0.2640 -0.0088 0.0141 0.0071 2 DC A C4 36 N N4 . DC A 2 ? 0.2514 0.2699 0.2800 -0.0109 0.0184 0.0065 2 DC A N4 37 C C5 . DC A 2 ? 0.2793 0.2713 0.2931 -0.0124 0.0199 0.0120 2 DC A C5 38 C C6 . DC A 2 ? 0.3211 0.2900 0.3167 -0.0098 0.0182 0.0143 2 DC A C6 39 P P . DC A 3 ? 0.5137 0.3228 0.3292 0.0213 0.0391 0.0381 3 DC A P 40 O OP1 . DC A 3 ? 0.6217 0.3698 0.3706 0.0344 0.0452 0.0463 3 DC A OP1 41 O OP2 . DC A 3 ? 0.5076 0.3450 0.3595 0.0065 0.0600 0.0411 3 DC A OP2 42 O "O5'" . DC A 3 ? 0.4671 0.2999 0.2934 0.0309 0.0127 0.0245 3 DC A "O5'" 43 C "C5'" . DC A 3 ? 0.4970 0.3128 0.3018 0.0477 -0.0140 0.0147 3 DC A "C5'" 44 C "C4'" . DC A 3 ? 0.4290 0.2805 0.2704 0.0499 -0.0330 -0.0007 3 DC A "C4'" 45 O "O4'" . DC A 3 ? 0.4086 0.3051 0.3048 0.0349 -0.0270 -0.0026 3 DC A "O4'" 46 C "C3'" . DC A 3 ? 0.4475 0.3023 0.2849 0.0497 -0.0282 -0.0020 3 DC A "C3'" 47 O "O3'" . DC A 3 ? 0.5221 0.3391 0.3121 0.0696 -0.0454 -0.0086 3 DC A "O3'" 48 C "C2'" . DC A 3 ? 0.3710 0.2717 0.2659 0.0415 -0.0359 -0.0134 3 DC A "C2'" 49 C "C1'" . DC A 3 ? 0.3301 0.2546 0.2559 0.0296 -0.0264 -0.0086 3 DC A "C1'" 50 N N1 . DC A 3 ? 0.3150 0.2590 0.2597 0.0150 -0.0053 0.0011 3 DC A N1 51 C C2 . DC A 3 ? 0.2703 0.2429 0.2481 0.0079 -0.0025 -0.0029 3 DC A C2 52 O O2 . DC A 3 ? 0.2899 0.2725 0.2857 0.0110 -0.0135 -0.0139 3 DC A O2 53 N N3 . DC A 3 ? 0.2694 0.2556 0.2598 -0.0012 0.0119 0.0042 3 DC A N3 54 C C4 . DC A 3 ? 0.2983 0.2766 0.2802 -0.0048 0.0226 0.0122 3 DC A C4 55 N N4 . DC A 3 ? 0.3052 0.2987 0.3052 -0.0112 0.0317 0.0149 3 DC A N4 56 C C5 . DC A 3 ? 0.3077 0.2590 0.2631 -0.0010 0.0245 0.0166 3 DC A C5 57 C C6 . DC A 3 ? 0.3365 0.2681 0.2683 0.0096 0.0107 0.0122 3 DC A C6 58 P P . DC A 4 ? 0.5442 0.3402 0.2998 0.0751 -0.0367 -0.0061 4 DC A P 59 O OP1 . DC A 4 ? 0.6537 0.3973 0.3442 0.1009 -0.0577 -0.0127 4 DC A OP1 60 O OP2 . DC A 4 ? 0.5417 0.3407 0.2978 0.0601 -0.0021 0.0102 4 DC A OP2 61 O "O5'" . DC A 4 ? 0.4638 0.3029 0.2736 0.0681 -0.0470 -0.0196 4 DC A "O5'" 62 C "C5'" . DC A 4 ? 0.4773 0.3254 0.3092 0.0785 -0.0776 -0.0401 4 DC A "C5'" 63 C "C4'" . DC A 4 ? 0.3839 0.2715 0.2725 0.0659 -0.0762 -0.0487 4 DC A "C4'" 64 O "O4'" . DC A 4 ? 0.3434 0.2675 0.2780 0.0467 -0.0582 -0.0412 4 DC A "O4'" 65 C "C3'" . DC A 4 ? 0.3753 0.2569 0.2483 0.0624 -0.0613 -0.0421 4 DC A "C3'" 66 O "O3'" . DC A 4 ? 0.4312 0.2833 0.2702 0.0813 -0.0824 -0.0552 4 DC A "O3'" 67 C "C2'" . DC A 4 ? 0.3337 0.2567 0.2684 0.0449 -0.0531 -0.0450 4 DC A "C2'" 68 C "C1'" . DC A 4 ? 0.3110 0.2557 0.2722 0.0344 -0.0443 -0.0386 4 DC A "C1'" 69 N N1 . DC A 4 ? 0.2866 0.2398 0.2457 0.0221 -0.0191 -0.0209 4 DC A N1 70 C C2 . DC A 4 ? 0.2559 0.2333 0.2477 0.0099 -0.0069 -0.0180 4 DC A C2 71 O O2 . DC A 4 ? 0.2567 0.2460 0.2777 0.0071 -0.0121 -0.0278 4 DC A O2 72 N N3 . DC A 4 ? 0.2309 0.2152 0.2220 0.0024 0.0098 -0.0059 4 DC A N3 73 C C4 . DC A 4 ? 0.2530 0.2250 0.2221 0.0037 0.0170 0.0022 4 DC A C4 74 N N4 . DC A 4 ? 0.2710 0.2535 0.2507 -0.0034 0.0303 0.0096 4 DC A N4 75 C C5 . DC A 4 ? 0.3189 0.2636 0.2537 0.0135 0.0106 0.0020 4 DC A C5 76 C C6 . DC A 4 ? 0.3115 0.2454 0.2374 0.0240 -0.0088 -0.0093 4 DC A C6 77 P P . DG A 5 ? 0.4672 0.3019 0.2755 0.0846 -0.0710 -0.0513 5 DG A P 78 O OP1 . DG A 5 ? 0.5246 0.3232 0.2921 0.1091 -0.1003 -0.0685 5 DG A OP1 79 O OP2 . DG A 5 ? 0.5008 0.3238 0.2785 0.0779 -0.0382 -0.0300 5 DG A OP2 80 O "O5'" . DG A 5 ? 0.3864 0.2628 0.2602 0.0670 -0.0660 -0.0565 5 DG A "O5'" 81 C "C5'" . DG A 5 ? 0.3771 0.2608 0.2528 0.0576 -0.0437 -0.0460 5 DG A "C5'" 82 C "C4'" . DG A 5 ? 0.3201 0.2376 0.2554 0.0418 -0.0409 -0.0502 5 DG A "C4'" 83 O "O4'" . DG A 5 ? 0.2850 0.2270 0.2513 0.0289 -0.0309 -0.0426 5 DG A "O4'" 84 C "C3'" . DG A 5 ? 0.3122 0.2358 0.2517 0.0342 -0.0225 -0.0417 5 DG A "C3'" 85 O "O3'" . DG A 5 ? 0.3519 0.2598 0.2811 0.0432 -0.0340 -0.0534 5 DG A "O3'" 86 C "C2'" . DG A 5 ? 0.2780 0.2296 0.2670 0.0181 -0.0146 -0.0394 5 DG A "C2'" 87 C "C1'" . DG A 5 ? 0.2598 0.2208 0.2528 0.0152 -0.0133 -0.0344 5 DG A "C1'" 88 N N9 . DG A 5 ? 0.2443 0.2087 0.2231 0.0109 0.0045 -0.0187 5 DG A N9 89 C C8 . DG A 5 ? 0.2601 0.2111 0.2086 0.0159 0.0093 -0.0116 5 DG A C8 90 N N7 . DG A 5 ? 0.2594 0.2204 0.2138 0.0088 0.0254 -0.0011 5 DG A N7 91 C C5 . DG A 5 ? 0.2200 0.1991 0.2025 0.0016 0.0286 -0.0010 5 DG A C5 92 C C6 . DG A 5 ? 0.2314 0.2238 0.2282 -0.0040 0.0387 0.0055 5 DG A C6 93 O O6 . DG A 5 ? 0.2641 0.2609 0.2619 -0.0054 0.0464 0.0105 5 DG A O6 94 N N1 . DG A 5 ? 0.1986 0.1962 0.2102 -0.0069 0.0385 0.0044 5 DG A N1 95 C C2 . DG A 5 ? 0.2130 0.2064 0.2334 -0.0081 0.0331 -0.0022 5 DG A C2 96 N N2 . DG A 5 ? 0.2408 0.2333 0.2725 -0.0121 0.0387 -0.0004 5 DG A N2 97 N N3 . DG A 5 ? 0.2209 0.2078 0.2392 -0.0044 0.0220 -0.0113 5 DG A N3 98 C C4 . DG A 5 ? 0.2218 0.2009 0.2172 0.0019 0.0187 -0.0101 5 DG A C4 99 P P . DA A 6 ? 0.3763 0.2757 0.2850 0.0450 -0.0178 -0.0463 6 DA A P 100 O OP1 . DA A 6 ? 0.4452 0.3217 0.3340 0.0589 -0.0355 -0.0617 6 DA A OP1 101 O OP2 . DA A 6 ? 0.4537 0.3477 0.3333 0.0458 0.0032 -0.0314 6 DA A OP2 102 O "O5'" . DA A 6 ? 0.3168 0.2408 0.2698 0.0290 -0.0062 -0.0409 6 DA A "O5'" 103 C "C5'" . DA A 6 ? 0.3121 0.2418 0.3017 0.0227 -0.0159 -0.0517 6 DA A "C5'" 104 C "C4'" . DA A 6 ? 0.2921 0.2343 0.3070 0.0097 0.0007 -0.0414 6 DA A "C4'" 105 O "O4'" . DA A 6 ? 0.2727 0.2302 0.2950 0.0024 0.0109 -0.0306 6 DA A "O4'" 106 C "C3'" . DA A 6 ? 0.3029 0.2400 0.2991 0.0133 0.0123 -0.0329 6 DA A "C3'" 107 O "O3'" . DA A 6 ? 0.3364 0.2591 0.3324 0.0177 0.0059 -0.0419 6 DA A "O3'" 108 C "C2'" . DA A 6 ? 0.2796 0.2275 0.2931 0.0036 0.0249 -0.0216 6 DA A "C2'" 109 C "C1'" . DA A 6 ? 0.2924 0.2533 0.3115 -0.0007 0.0251 -0.0186 6 DA A "C1'" 110 N N9 . DA A 6 ? 0.2558 0.2230 0.2574 0.0030 0.0310 -0.0108 6 DA A N9 111 C C8 . DA A 6 ? 0.2572 0.2204 0.2398 0.0083 0.0284 -0.0118 6 DA A C8 112 N N7 . DA A 6 ? 0.2651 0.2342 0.2416 0.0079 0.0390 -0.0038 6 DA A N7 113 C C5 . DA A 6 ? 0.2503 0.2305 0.2441 0.0040 0.0444 0.0004 6 DA A C5 114 C C6 . DA A 6 ? 0.2431 0.2346 0.2460 0.0034 0.0516 0.0051 6 DA A C6 115 N N6 . DA A 6 ? 0.2496 0.2461 0.2527 0.0030 0.0590 0.0071 6 DA A N6 116 N N1 . DA A 6 ? 0.2195 0.2136 0.2317 0.0042 0.0501 0.0064 6 DA A N1 117 C C2 . DA A 6 ? 0.2230 0.2060 0.2331 0.0035 0.0470 0.0058 6 DA A C2 118 N N3 . DA A 6 ? 0.2614 0.2358 0.2712 0.0007 0.0437 0.0015 6 DA A N3 119 C C4 . DA A 6 ? 0.2488 0.2243 0.2519 0.0019 0.0402 -0.0024 6 DA A C4 120 P P . DG A 7 ? 0.3374 0.2485 0.3040 0.0296 0.0106 -0.0414 7 DG A P 121 O OP1 . DG A 7 ? 0.3864 0.2813 0.3577 0.0334 -0.0004 -0.0536 7 DG A OP1 122 O OP2 . DG A 7 ? 0.3831 0.2895 0.3167 0.0391 0.0146 -0.0395 7 DG A OP2 123 O "O5'" . DG A 7 ? 0.3245 0.2469 0.3001 0.0253 0.0256 -0.0290 7 DG A "O5'" 124 C "C5'" . DG A 7 ? 0.3289 0.2475 0.3226 0.0186 0.0271 -0.0259 7 DG A "C5'" 125 C "C4'" . DG A 7 ? 0.3046 0.2309 0.2975 0.0200 0.0361 -0.0156 7 DG A "C4'" 126 O "O4'" . DG A 7 ? 0.2945 0.2372 0.2912 0.0152 0.0400 -0.0093 7 DG A "O4'" 127 C "C3'" . DG A 7 ? 0.2857 0.2158 0.2697 0.0311 0.0397 -0.0177 7 DG A "C3'" 128 O "O3'" . DG A 7 ? 0.3275 0.2422 0.3096 0.0371 0.0365 -0.0210 7 DG A "O3'" 129 C "C2'" . DG A 7 ? 0.3112 0.2581 0.3044 0.0308 0.0446 -0.0111 7 DG A "C2'" 130 C "C1'" . DG A 7 ? 0.2808 0.2353 0.2770 0.0209 0.0449 -0.0063 7 DG A "C1'" 131 N N9 . DG A 7 ? 0.2575 0.2229 0.2503 0.0205 0.0498 -0.0066 7 DG A N9 132 C C8 . DG A 7 ? 0.2800 0.2382 0.2587 0.0203 0.0477 -0.0097 7 DG A C8 133 N N7 . DG A 7 ? 0.2901 0.2526 0.2609 0.0208 0.0557 -0.0070 7 DG A N7 134 C C5 . DG A 7 ? 0.2437 0.2223 0.2340 0.0193 0.0635 -0.0036 7 DG A C5 135 C C6 . DG A 7 ? 0.2587 0.2486 0.2593 0.0171 0.0752 -0.0014 7 DG A C6 136 O O6 . DG A 7 ? 0.2696 0.2528 0.2571 0.0157 0.0847 0.0012 7 DG A O6 137 N N1 . DG A 7 ? 0.2643 0.2713 0.2933 0.0177 0.0748 -0.0034 7 DG A N1 138 C C2 . DG A 7 ? 0.2804 0.2874 0.3157 0.0225 0.0637 -0.0055 7 DG A C2 139 N N2 . DG A 7 ? 0.2650 0.2856 0.3244 0.0270 0.0596 -0.0099 7 DG A N2 140 N N3 . DG A 7 ? 0.2656 0.2569 0.2847 0.0239 0.0565 -0.0045 7 DG A N3 141 C C4 . DG A 7 ? 0.2383 0.2188 0.2404 0.0208 0.0573 -0.0043 7 DG A C4 142 P P . DC A 8 ? 0.3614 0.2738 0.3354 0.0502 0.0384 -0.0291 8 DC A P 143 O OP1 . DC A 8 ? 0.3725 0.2639 0.3447 0.0550 0.0317 -0.0324 8 DC A OP1 144 O OP2 . DC A 8 ? 0.4593 0.3698 0.4171 0.0530 0.0405 -0.0349 8 DC A OP2 145 O "O5'" . DC A 8 ? 0.3888 0.3227 0.3760 0.0553 0.0462 -0.0271 8 DC A "O5'" 146 C "C5'" . DC A 8 ? 0.3909 0.3251 0.3880 0.0593 0.0403 -0.0245 8 DC A "C5'" 147 C "C4'" . DC A 8 ? 0.3430 0.3020 0.3629 0.0654 0.0442 -0.0288 8 DC A "C4'" 148 O "O4'" . DC A 8 ? 0.3337 0.3101 0.3615 0.0556 0.0521 -0.0246 8 DC A "O4'" 149 C "C3'" . DC A 8 ? 0.4886 0.4572 0.5206 0.0752 0.0534 -0.0397 8 DC A "C3'" 150 O "O3'" . DC A 8 ? 0.5093 0.4905 0.5678 0.0866 0.0468 -0.0480 8 DC A "O3'" 151 C "C2'" . DC A 8 ? 0.4286 0.4128 0.4662 0.0679 0.0714 -0.0388 8 DC A "C2'" 152 C "C1'" . DC A 8 ? 0.3765 0.3703 0.4216 0.0577 0.0667 -0.0309 8 DC A "C1'" 153 N N1 . DC A 8 ? 0.3255 0.3190 0.3576 0.0481 0.0783 -0.0251 8 DC A N1 154 C C2 . DC A 8 ? 0.2991 0.3101 0.3522 0.0425 0.0908 -0.0246 8 DC A C2 155 O O2 . DC A 8 ? 0.3043 0.3354 0.3939 0.0449 0.0902 -0.0312 8 DC A O2 156 N N3 . DC A 8 ? 0.2749 0.2779 0.3088 0.0357 0.1013 -0.0184 8 DC A N3 157 C C4 . DC A 8 ? 0.2946 0.2754 0.2912 0.0365 0.0963 -0.0151 8 DC A C4 158 N N4 . DC A 8 ? 0.2919 0.2608 0.2653 0.0333 0.1035 -0.0101 8 DC A N4 159 C C5 . DC A 8 ? 0.2843 0.2519 0.2674 0.0416 0.0819 -0.0184 8 DC A C5 160 C C6 . DC A 8 ? 0.3162 0.2897 0.3171 0.0463 0.0754 -0.0222 8 DC A C6 161 O O . HOH B . ? 0.5664 0.4317 0.4049 0.0284 0.0285 0.0185 101 HOH A O 162 O O . HOH B . ? 0.4477 0.4542 0.5450 -0.0341 0.0418 0.0063 102 HOH A O 163 O O . HOH B . ? 0.4823 0.3913 0.4024 0.0603 0.0567 -0.0360 103 HOH A O 164 O O . HOH B . ? 0.3146 0.3466 0.3565 -0.0055 0.0115 0.0003 104 HOH A O 165 O O . HOH B . ? 0.4667 0.3457 0.3105 0.0422 0.0073 -0.0063 105 HOH A O 166 O O . HOH B . ? 0.3348 0.3702 0.3708 -0.0055 0.0243 0.0011 106 HOH A O 167 O O . HOH B . ? 0.4417 0.3674 0.3909 0.0350 -0.0457 -0.0147 107 HOH A O 168 O O . HOH B . ? 0.4523 0.3861 0.3688 0.0226 0.0388 -0.0050 108 HOH A O 169 O O . HOH B . ? 0.5098 0.4472 0.4269 0.0237 0.0838 0.0035 109 HOH A O 170 O O . HOH B . ? 0.5777 0.3723 0.5014 -0.0364 0.1177 0.0568 110 HOH A O 171 O O . HOH B . ? 0.6101 0.4796 0.4752 0.0079 0.0626 0.0345 111 HOH A O 172 O O . HOH B . ? 0.4611 0.3715 0.3708 0.0490 0.0492 -0.0285 112 HOH A O 173 O O . HOH B . ? 0.5957 0.4126 0.4151 0.1107 -0.1259 -0.0996 113 HOH A O 174 O O . HOH B . ? 0.4293 0.3687 0.3507 0.0083 0.0547 0.0150 114 HOH A O 175 O O . HOH B . ? 0.2555 0.2451 0.3299 -0.0144 0.0164 -0.0296 115 HOH A O 176 O O . HOH B . ? 0.4123 0.4413 0.4575 -0.0146 0.0245 0.0088 116 HOH A O 177 O O . HOH B . ? 0.4219 0.3390 0.5430 -0.0654 0.0955 0.0181 117 HOH A O 178 O O . HOH B . ? 0.4229 0.3396 0.3179 0.0461 0.0822 -0.0146 118 HOH A O 179 O O . HOH B . ? 0.3899 0.3748 0.3740 -0.0005 0.0733 0.0133 119 HOH A O 180 O O . HOH B . ? 0.4922 0.4192 0.4011 0.0319 0.0573 -0.0091 120 HOH A O 181 O O . HOH B . ? 0.3905 0.3665 0.4130 0.0424 0.0404 -0.0094 121 HOH A O 182 O O . HOH B . ? 0.4502 0.4017 0.3999 -0.0052 0.0583 0.0233 122 HOH A O 183 O O . HOH B . ? 0.4383 0.4239 0.4549 -0.0219 0.0564 0.0222 123 HOH A O 184 O O . HOH B . ? 0.5887 0.5254 0.5749 -0.0242 0.0693 0.0311 124 HOH A O 185 O O . HOH B . ? 0.6044 0.4818 0.5455 0.0524 0.0132 -0.0534 125 HOH A O 186 O O . HOH B . ? 0.4332 0.4324 0.4798 0.0467 0.0275 -0.0114 126 HOH A O 187 O O . HOH B . ? 0.2814 0.2568 0.3929 -0.0139 -0.0020 -0.0566 127 HOH A O 188 O O . HOH B . ? 0.3328 0.2845 0.4276 -0.0198 0.0218 -0.0399 128 HOH A O 189 O O . HOH B . ? 0.5716 0.4343 0.5655 0.0271 0.0239 -0.0323 129 HOH A O 190 O O . HOH B . ? 0.6343 0.3683 0.3822 0.0559 -0.0134 0.0300 130 HOH A O 191 O O . HOH B . ? 0.5509 0.4377 0.3989 0.0378 0.0347 -0.0020 131 HOH A O 192 O O . HOH B . ? 0.6060 0.4398 0.4509 0.0626 -0.0617 -0.0082 132 HOH A O 193 O O . HOH B . ? 0.5898 0.4594 0.4238 0.0296 0.0429 0.0168 133 HOH A O 194 O O . HOH B . ? 0.4919 0.5107 0.6699 -0.0487 0.0549 -0.0077 134 HOH A O 195 O O . HOH B . ? 0.3588 0.3790 0.5803 -0.0508 0.0318 -0.0258 135 HOH A O 196 O O . HOH B . ? 0.7049 0.4932 0.4554 0.1105 -0.0796 -0.0746 136 HOH A O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DC 4 4 4 DC DC A . n A 1 5 DG 5 5 5 DG DG A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DC 8 8 8 DC DC A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 101 31 HOH HOH A . B 2 HOH 2 102 21 HOH HOH A . B 2 HOH 3 103 19 HOH HOH A . B 2 HOH 4 104 2 HOH HOH A . B 2 HOH 5 105 9 HOH HOH A . B 2 HOH 6 106 15 HOH HOH A . B 2 HOH 7 107 23 HOH HOH A . B 2 HOH 8 108 11 HOH HOH A . B 2 HOH 9 109 25 HOH HOH A . B 2 HOH 10 110 22 HOH HOH A . B 2 HOH 11 111 26 HOH HOH A . B 2 HOH 12 112 8 HOH HOH A . B 2 HOH 13 113 6 HOH HOH A . B 2 HOH 14 114 12 HOH HOH A . B 2 HOH 15 115 1 HOH HOH A . B 2 HOH 16 116 13 HOH HOH A . B 2 HOH 17 117 10 HOH HOH A . B 2 HOH 18 118 3 HOH HOH A . B 2 HOH 19 119 4 HOH HOH A . B 2 HOH 20 120 7 HOH HOH A . B 2 HOH 21 121 17 HOH HOH A . B 2 HOH 22 122 20 HOH HOH A . B 2 HOH 23 123 16 HOH HOH A . B 2 HOH 24 124 28 HOH HOH A . B 2 HOH 25 125 18 HOH HOH A . B 2 HOH 26 126 33 HOH HOH A . B 2 HOH 27 127 5 HOH HOH A . B 2 HOH 28 128 14 HOH HOH A . B 2 HOH 29 129 34 HOH HOH A . B 2 HOH 30 130 32 HOH HOH A . B 2 HOH 31 131 30 HOH HOH A . B 2 HOH 32 132 27 HOH HOH A . B 2 HOH 33 133 35 HOH HOH A . B 2 HOH 34 134 24 HOH HOH A . B 2 HOH 35 135 29 HOH HOH A . B 2 HOH 36 136 36 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 760 ? 1 MORE -5 ? 1 'SSA (A^2)' 3080 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-12-06 2 'Structure model' 1 1 2023-11-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 9.5067 _pdbx_refine_tls.origin_y 9.0897 _pdbx_refine_tls.origin_z 2.4899 _pdbx_refine_tls.T[1][1] 0.2230 _pdbx_refine_tls.T[2][2] 0.1966 _pdbx_refine_tls.T[3][3] 0.1895 _pdbx_refine_tls.T[1][2] 0.0010 _pdbx_refine_tls.T[1][3] 0.0392 _pdbx_refine_tls.T[2][3] 0.0085 _pdbx_refine_tls.L[1][1] 1.7947 _pdbx_refine_tls.L[2][2] 6.1765 _pdbx_refine_tls.L[3][3] 2.1330 _pdbx_refine_tls.L[1][2] -1.9270 _pdbx_refine_tls.L[1][3] -0.0487 _pdbx_refine_tls.L[2][3] 2.0046 _pdbx_refine_tls.S[1][1] -0.1305 _pdbx_refine_tls.S[1][2] -0.1571 _pdbx_refine_tls.S[1][3] 0.0532 _pdbx_refine_tls.S[2][1] 0.6226 _pdbx_refine_tls.S[2][2] 0.1950 _pdbx_refine_tls.S[2][3] -0.0137 _pdbx_refine_tls.S[3][1] 0.0978 _pdbx_refine_tls.S[3][2] -0.0281 _pdbx_refine_tls.S[3][3] -0.0590 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id ? _pdbx_refine_tls_group.beg_auth_seq_id ? _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_auth_asym_id ? _pdbx_refine_tls_group.end_auth_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? _pdbx_refine_tls_group.selection_details all # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(1.10.1_2155: ???)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-3000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 HOH O O N N 108 HOH H1 H N N 109 HOH H2 H N N 110 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 HOH O H1 sing N N 113 HOH O H2 sing N N 114 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 5XK0 'a-form double helix' 5XK0 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 8 7_555 -0.309 -0.168 -0.131 -7.936 -6.299 -3.078 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A DC 2 1_555 A DG 7 7_555 0.290 -0.152 0.035 4.710 -15.564 2.320 2 A_DC2:DG7_A A 2 ? A 7 ? 19 1 1 A DC 3 1_555 A DA 6 7_555 2.530 -0.545 0.198 -2.906 -16.165 7.575 3 A_DC3:DA6_A A 3 ? A 6 ? ? 1 1 A DC 4 1_555 A DG 5 7_555 0.243 -0.163 0.108 -2.093 -7.720 0.757 4 A_DC4:DG5_A A 4 ? A 5 ? 19 1 1 A DG 5 1_555 A DC 4 7_555 -0.243 -0.163 0.108 2.093 -7.720 0.757 5 A_DG5:DC4_A A 5 ? A 4 ? 19 1 1 A DA 6 1_555 A DC 3 7_555 -2.530 -0.545 0.198 2.906 -16.165 7.575 6 A_DA6:DC3_A A 6 ? A 3 ? ? 1 1 A DG 7 1_555 A DC 2 7_555 -0.290 -0.152 0.035 -4.710 -15.564 2.320 7 A_DG7:DC2_A A 7 ? A 2 ? 19 1 1 A DC 8 1_555 A DG 1 7_555 0.309 -0.168 -0.131 7.936 -6.299 -3.078 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 8 7_555 A DC 2 1_555 A DG 7 7_555 0.728 -1.099 3.015 -0.430 8.020 33.596 -2.950 -1.285 2.680 13.635 0.732 34.516 1 AA_DG1DC2:DG7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A DC 2 1_555 A DG 7 7_555 A DC 3 1_555 A DA 6 7_555 0.240 -1.069 3.484 2.014 5.610 43.679 -1.977 -0.122 3.336 7.499 -2.692 44.065 2 AA_DC2DC3:DA6DG7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DC 3 1_555 A DA 6 7_555 A DC 4 1_555 A DG 5 7_555 -0.175 -1.710 3.007 4.084 5.355 25.731 -4.935 1.308 2.548 11.770 -8.977 26.583 3 AA_DC3DC4:DG5DA6_AA A 3 ? A 6 ? A 4 ? A 5 ? 1 A DC 4 1_555 A DG 5 7_555 A DG 5 1_555 A DC 4 7_555 0.000 -2.026 3.109 0.000 7.569 19.531 -8.271 0.000 2.178 21.306 0.000 20.933 4 AA_DC4DG5:DC4DG5_AA A 4 ? A 5 ? A 5 ? A 4 ? 1 A DG 5 1_555 A DC 4 7_555 A DA 6 1_555 A DC 3 7_555 0.175 -1.710 3.007 -4.084 5.355 25.731 -4.935 -1.308 2.548 11.770 8.977 26.583 5 AA_DG5DA6:DC3DC4_AA A 5 ? A 4 ? A 6 ? A 3 ? 1 A DA 6 1_555 A DC 3 7_555 A DG 7 1_555 A DC 2 7_555 -0.240 -1.069 3.484 -2.014 5.610 43.679 -1.977 0.122 3.336 7.499 2.692 44.065 6 AA_DA6DG7:DC2DC3_AA A 6 ? A 3 ? A 7 ? A 2 ? 1 A DG 7 1_555 A DC 2 7_555 A DC 8 1_555 A DG 1 7_555 -0.728 -1.099 3.015 0.430 8.020 33.596 -2.950 1.285 2.680 13.635 -0.732 34.516 7 AA_DG7DC8:DG1DC2_AA A 7 ? A 2 ? A 8 ? A 1 ? # _pdbx_audit_support.funding_organization 'National Natural Science Foundation of China' _pdbx_audit_support.country China _pdbx_audit_support.grant_number 31370728 _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 5WSP _pdbx_initial_refinement_model.details ? # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? #