1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Xu, D. Zhou, G. Qin, L.Y. Ran, M.L. Zhang, C.L. Liu, K. Liu, Z. Zhang, W.P. Tang, C. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H8 N O6 P 185.072 n PHOSPHOSERINE PHOSPHONOSERINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proc. Natl. Acad. Sci. U.S.A. PNASA6 0040 1091-6490 114 6770 6775 10.1073/pnas.1705718114 28611216 Ubiquitin S65 phosphorylation engenders a pH-sensitive conformational switch 2017 10.2210/pdb5xk5/pdb pdb_00005xk5 8656.811 Polyubiquitin-B UNP residues 1-76 1 man polymer no yes MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE(SEP)TLHLVLRLRGG MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 76 UBB 9606 Homo sapiens 83333 Escherichia coli K-12 Biological sequence citation database_2 pdbx_database_status pdbx_nmr_spectrometer repository Initial release Database references Data collection Database references Other 1 0 2017-06-28 1 1 2017-07-12 1 2 2023-06-14 _citation.journal_volume _citation.page_first _citation.page_last _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_database_status.status_code_nmr_data _pdbx_nmr_spectrometer.model China the Chinese Ministry of Science and Technology 2013CB910200 China the Chinese Ministry of Science and Technology 2016YFA0501200 China the National Natural Science Foundation of China 31225007 China the National Natural Science Foundation of China 31500595 China the National Natural Science Foundation of China 31400735 China the National Natural Science Foundation of China 31400644 Ubiquitin S65 phosphorylation engenders a pH-sensitive conformational switch N PDBJ Y PDBJ 2017-05-05 REL REL REL REL structures with the lowest energy 160 30 isotropic 1 2D 1H-15N HSQC isotropic 2 3D CBCA(CO)NH isotropic 2 3D HNCA isotropic 2 3D 1H-15N NOESY isotropic 2 3D 1H-13C NOESY 0.8 mM [U-98% 13C; U-98% 15N] 150 mM buffer 1 7.4 pH 760 mmHg 298 K simulated annealing 1 closest to the average 0.8 mM [U-98% 13C; U-98% 15N] relaxed pUb, 90% H2O/10% D2O 13C 15N relaxed 90% H2O/10% D2O solution Schwieters, Kuszewski, Tjandra and Clore refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore structure calculation X-PLOR NIH CCPN chemical shift assignment CcpNMR CCPN peak picking CcpNMR 600 Bruker AVANCE III 850 Bruker AVANCE III MET 1 n 1 MET 1 A GLN 2 n 2 GLN 2 A ILE 3 n 3 ILE 3 A PHE 4 n 4 PHE 4 A VAL 5 n 5 VAL 5 A LYS 6 n 6 LYS 6 A THR 7 n 7 THR 7 A LEU 8 n 8 LEU 8 A THR 9 n 9 THR 9 A GLY 10 n 10 GLY 10 A LYS 11 n 11 LYS 11 A THR 12 n 12 THR 12 A ILE 13 n 13 ILE 13 A THR 14 n 14 THR 14 A LEU 15 n 15 LEU 15 A GLU 16 n 16 GLU 16 A VAL 17 n 17 VAL 17 A GLU 18 n 18 GLU 18 A PRO 19 n 19 PRO 19 A SER 20 n 20 SER 20 A ASP 21 n 21 ASP 21 A THR 22 n 22 THR 22 A ILE 23 n 23 ILE 23 A GLU 24 n 24 GLU 24 A ASN 25 n 25 ASN 25 A VAL 26 n 26 VAL 26 A LYS 27 n 27 LYS 27 A ALA 28 n 28 ALA 28 A LYS 29 n 29 LYS 29 A ILE 30 n 30 ILE 30 A GLN 31 n 31 GLN 31 A ASP 32 n 32 ASP 32 A LYS 33 n 33 LYS 33 A GLU 34 n 34 GLU 34 A GLY 35 n 35 GLY 35 A ILE 36 n 36 ILE 36 A PRO 37 n 37 PRO 37 A PRO 38 n 38 PRO 38 A ASP 39 n 39 ASP 39 A GLN 40 n 40 GLN 40 A GLN 41 n 41 GLN 41 A ARG 42 n 42 ARG 42 A LEU 43 n 43 LEU 43 A ILE 44 n 44 ILE 44 A PHE 45 n 45 PHE 45 A ALA 46 n 46 ALA 46 A GLY 47 n 47 GLY 47 A LYS 48 n 48 LYS 48 A GLN 49 n 49 GLN 49 A LEU 50 n 50 LEU 50 A GLU 51 n 51 GLU 51 A ASP 52 n 52 ASP 52 A GLY 53 n 53 GLY 53 A ARG 54 n 54 ARG 54 A THR 55 n 55 THR 55 A LEU 56 n 56 LEU 56 A SER 57 n 57 SER 57 A ASP 58 n 58 ASP 58 A TYR 59 n 59 TYR 59 A ASN 60 n 60 ASN 60 A ILE 61 n 61 ILE 61 A GLN 62 n 62 GLN 62 A LYS 63 n 63 LYS 63 A GLU 64 n 64 GLU 64 A SEP 65 n 65 SEP 65 A THR 66 n 66 THR 66 A LEU 67 n 67 LEU 67 A HIS 68 n 68 HIS 68 A LEU 69 n 69 LEU 69 A VAL 70 n 70 VAL 70 A LEU 71 n 71 LEU 71 A ARG 72 n 72 ARG 72 A LEU 73 n 73 LEU 73 A ARG 74 n 74 ARG 74 A GLY 75 n 75 GLY 75 A GLY 76 n 76 GLY 76 A author_defined_assembly 1 monomeric none 0 0 5130 A SEP 65 modified residue A SEP 65 SER 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 A O ILE 13 A O ILE 13 A N VAL 5 A N VAL 5 A N PHE 4 A N PHE 4 A O LEU 67 A O LEU 67 A O VAL 70 A O VAL 70 A N ARG 42 A N ARG 42 A N PHE 45 A N PHE 45 A O LYS 48 A O LYS 48 2 A A O H TYR ILE 59 61 1.53 3 A A O H TYR ILE 59 61 1.56 4 A A O H TYR ILE 59 61 1.57 5 A A O H TYR ILE 59 61 1.57 6 A A O H TYR ILE 59 61 1.53 8 A A O H TYR ILE 59 61 1.57 9 A A O H TYR ILE 59 61 1.55 11 A A O H TYR ILE 59 61 1.52 12 A A O H TYR ILE 59 61 1.55 13 A A HG1 HG1 THR THR 7 9 1.27 13 A A HG1 H THR ASN 22 25 1.34 13 A A O H TYR ILE 59 61 1.49 14 A A HD22 HZ2 ASN LYS 25 29 1.33 14 A A O H TYR ILE 59 61 1.54 16 A A O H TYR ILE 59 61 1.57 17 A A O H TYR ILE 59 61 1.55 18 A A O H TYR ILE 59 61 1.58 19 A A O H TYR ILE 59 61 1.56 20 A A O H TYR ILE 59 61 1.59 21 A A H HH GLU TYR 51 59 1.29 21 A A O H TYR ILE 59 61 1.58 22 A A O H TYR ILE 59 61 1.57 23 A A O H PRO GLN 37 40 1.58 24 A A O H TYR ILE 59 61 1.60 25 A A O H TYR ILE 59 61 1.54 26 A A O H TYR ILE 59 61 1.59 28 A A HG1 H THR ASN 22 25 1.35 28 A A O H TYR ILE 59 61 1.51 29 A A O H TYR ILE 59 61 1.56 30 A A O H TYR ILE 59 61 1.55 1 A ASN 60 -46.96 66.44 2 A ASN 60 -47.07 63.28 3 A PRO 37 -46.72 150.45 3 A ASN 60 -48.54 64.80 4 A ASN 60 -49.27 64.98 4 A ARG 74 -168.47 -68.41 5 A ASN 60 -47.12 65.47 5 A LEU 73 51.98 72.63 6 A ASN 60 -46.67 63.48 7 A ASN 60 -48.13 66.34 7 A LEU 73 50.90 99.44 8 A ASN 60 -47.30 64.86 9 A ASN 60 -46.31 64.23 9 A ARG 74 -65.73 -75.89 10 A ASN 60 -47.98 66.89 11 A ASN 60 -47.81 63.17 12 A ASN 60 -47.12 64.34 12 A ARG 74 51.87 18.50 13 A ASN 60 -48.11 61.79 14 A ASN 60 -47.84 63.75 15 A ASN 60 -47.67 67.05 16 A ASN 60 -47.39 65.18 16 A LEU 73 -169.16 106.33 17 A ASN 60 -47.06 64.50 18 A PRO 37 -45.47 151.45 18 A ASN 60 -47.54 65.76 19 A PRO 37 -44.40 154.26 19 A ASN 60 -46.98 64.82 19 A LEU 71 -66.75 -175.05 19 A LEU 73 47.12 -175.34 19 A ARG 74 46.47 83.55 20 A ASN 60 -46.87 66.17 21 A PRO 38 -47.62 -16.05 21 A ASN 60 -46.84 65.49 21 A ARG 74 54.31 87.76 22 A ASN 60 -47.33 65.26 23 A PRO 38 -42.90 -16.10 23 A ASN 60 -47.50 66.25 24 A ASN 60 -47.81 66.29 24 A LEU 73 65.65 107.64 25 A ASN 60 -48.32 63.58 26 A ASN 60 -46.54 66.10 27 A ASN 60 -45.87 68.25 28 A ASN 60 -47.85 62.67 28 A LEU 73 57.11 109.00 29 A ASN 60 -47.68 64.88 29 A LEU 73 70.77 37.86 30 A ASN 60 -48.33 63.97 N Relaxed state of S65-phosphorylated ubiquitin 1 N N A THR 22 A THR 22 HELX_P A GLY 35 A GLY 35 1 AA1 14 A THR 55 A THR 55 HELX_P A TYR 59 A TYR 59 5 AA2 5 covale 1.336 both A GLU 64 A C GLU 64 1_555 A SEP 65 A N SEP 65 1_555 covale 1.332 both A SEP 65 A C SEP 65 1_555 A THR 66 A N THR 66 1_555 CELL CYCLE pH-sensitive ubiquitin conformational switch, CELL CYCLE UBB_HUMAN UNP 1 1 P0CG47 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 1 76 5XK5 1 76 P0CG47 A 1 1 76 5 anti-parallel parallel anti-parallel anti-parallel A THR 12 A THR 12 A GLU 16 A GLU 16 A GLN 2 A GLN 2 A LYS 6 A LYS 6 A THR 66 A THR 66 A LEU 71 A LEU 71 A GLN 41 A GLN 41 A PHE 45 A PHE 45 A LYS 48 A LYS 48 A GLN 49 A GLN 49