0.008275 0.004777 0.000000 0.000000 0.009555 0.000000 0.000000 0.000000 0.023459 0.00000 0.00000 0.00000 Jiang, L.G. Zhang, X. Huang, M.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 9 90.00 90.00 120.00 120.853 120.853 42.627 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C6 H14 O4 150.173 TRIETHYLENE GLYCOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C7 H8 Br N 186.049 1-(4-BROMOPHENYL)METHANAMINE 4-BROMOBENZYLAMINE non-polymer C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N C N 251 N O N 252 N C N 253 N O N 254 N C N 255 N C N 256 N O N 257 N C N 258 N C N 259 N O N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C Y 279 N C Y 280 N C Y 281 N C Y 282 N C Y 283 N C Y 284 N C N 285 N O N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N H N 297 N N N 298 S C N 299 N C N 300 N O N 301 N C N 302 N C N 303 N C N 304 N O N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N H N 314 N N N 315 N C Y 316 N C Y 317 N C Y 318 N C Y 319 N C Y 320 N C Y 321 N C N 322 N BR N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N N N 332 S C N 333 N C N 334 N O N 335 N C N 336 N O N 337 N O N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N S N 346 N O N 347 N O N 348 N O N 349 N O N 350 N N N 351 S C N 352 N C N 353 N O N 354 R C N 355 N O N 356 N C N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N N N 368 S C N 369 N C N 370 N O N 371 N C Y 372 N C Y 373 N C Y 374 N C Y 375 N N Y 376 N C Y 377 N C Y 378 N C Y 379 N C Y 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N N N 395 S C N 396 N C N 397 N O N 398 N C Y 399 N C Y 400 N C Y 401 N C Y 402 N C Y 403 N C Y 404 N C N 405 N O N 406 N O N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N N N 419 S C N 420 N C N 421 N O N 422 N C N 423 N C N 424 N C N 425 N O N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N H N 435 N H N 436 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing Y 271 N doub Y 272 N sing Y 273 N sing N 274 N sing Y 275 N doub N 276 N sing Y 277 N doub N 278 N sing Y 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N doub N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing Y 306 N doub Y 307 N sing Y 308 N sing N 309 N sing Y 310 N doub N 311 N sing Y 312 N sing N 313 N sing Y 314 N doub N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N doub N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N doub N 331 N doub N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N doub N 357 N sing N 358 N sing N 359 N sing N 360 N sing Y 361 N doub Y 362 N sing Y 363 N sing N 364 N sing Y 365 N doub Y 366 N sing Y 367 N sing N 368 N sing Y 369 N sing Y 370 N doub N 371 N sing Y 372 N doub N 373 N sing Y 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N doub N 385 N sing N 386 N sing N 387 N sing N 388 N sing Y 389 N doub Y 390 N sing Y 391 N sing N 392 N sing Y 393 N doub N 394 N sing Y 395 N doub N 396 N sing Y 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N doub N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing UK Rsc Adv 2046-2069 8 28189 28197 10.1039/c8ra03145b Halogen bonding for the design of inhibitors by targeting the S1 pocket of serine proteases 2018 10.2210/pdb5yc6/pdb pdb_00005yc6 100 1 PIXEL 2013-04-08 DECTRIS PILATUS3 6M SINGLE WAVELENGTH M x-ray 1 0.979 1.0 BL17U1 SSRF 0.979 SYNCHROTRON SSRF BEAMLINE BL17U1 27715.600 Urokinase-type plasminogen activator 3.4.21.73 Urokinase-type plasminogen activator chain B, UNP residues 179-324 1 man polymer 186.049 1-(4-BROMOPHENYL)METHANAMINE 1 syn non-polymer 96.063 SULFATE ION 1 syn non-polymer 150.173 TRIETHYLENE GLYCOL 2 syn non-polymer 18.015 water 214 nat water uPA no no IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVK LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW IRSHTK IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVK LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW IRSHTK U polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Human sample 1 246 PLAU 9606 Homo sapiens 4922 Komagataella pastoris Biological sequence 1 2.16 43.10 VAPOR DIFFUSION, SITTING DROP 50mM sodium citrate (pH 4.6), 2.0M ammonium sulfate supplemented with 5% PEG 400 298 chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Data collection Database references Refinement description 1 0 2018-10-03 1 1 2023-11-22 _database_2.pdbx_DOI _database_2.pdbx_database_accession China National Natural Science Foundation of China 31400637, 31170707, and 31370737 2018-10-03 SPRSDE N PDBJ Y PDBJ 2017-09-06 REL REL 1 U O HOH 610 5.84 1 U O HOH 611 7.05 1 U O HOH 612 7.73 1 U O HOH 613 7.80 1 U O HOH 614 8.04 PZH 1-(4-BROMOPHENYL)METHANAMINE SO4 SULFATE ION PGE TRIETHYLENE GLYCOL HOH water 4DVA PDB experimental model PZH 301 2 PZH PZH 301 U SO4 302 3 SO4 SO4 302 U PGE 304 4 PGE PGE 303 U PGE 305 4 PGE PGE 304 U HOH 401 5 HOH HOH 401 U HOH 402 5 HOH HOH 402 U HOH 403 5 HOH HOH 403 U HOH 404 5 HOH HOH 404 U HOH 405 5 HOH HOH 405 U HOH 406 5 HOH HOH 406 U HOH 407 5 HOH HOH 407 U HOH 408 5 HOH HOH 408 U HOH 409 5 HOH HOH 409 U HOH 410 5 HOH HOH 410 U HOH 411 5 HOH HOH 411 U HOH 412 5 HOH HOH 412 U HOH 413 5 HOH HOH 413 U HOH 414 5 HOH HOH 414 U HOH 415 5 HOH HOH 415 U HOH 416 5 HOH HOH 416 U HOH 417 5 HOH HOH 417 U HOH 418 5 HOH HOH 418 U HOH 419 5 HOH HOH 419 U HOH 420 5 HOH HOH 420 U HOH 421 5 HOH HOH 421 U HOH 422 5 HOH HOH 422 U HOH 423 5 HOH HOH 423 U HOH 424 5 HOH HOH 424 U HOH 425 5 HOH HOH 425 U HOH 426 5 HOH HOH 426 U HOH 427 5 HOH HOH 427 U HOH 428 5 HOH HOH 428 U HOH 429 5 HOH HOH 429 U HOH 430 5 HOH HOH 430 U HOH 431 5 HOH HOH 431 U HOH 432 5 HOH HOH 432 U HOH 433 5 HOH HOH 433 U HOH 434 5 HOH HOH 434 U HOH 435 5 HOH HOH 435 U HOH 436 5 HOH HOH 436 U HOH 437 5 HOH HOH 437 U HOH 438 5 HOH HOH 438 U HOH 439 5 HOH HOH 439 U HOH 440 5 HOH HOH 440 U HOH 441 5 HOH HOH 441 U HOH 442 5 HOH HOH 442 U HOH 443 5 HOH HOH 443 U HOH 444 5 HOH HOH 444 U HOH 445 5 HOH HOH 445 U HOH 446 5 HOH HOH 446 U HOH 447 5 HOH HOH 447 U HOH 448 5 HOH HOH 448 U HOH 449 5 HOH HOH 449 U HOH 450 5 HOH HOH 450 U HOH 451 5 HOH HOH 451 U HOH 452 5 HOH HOH 452 U HOH 453 5 HOH HOH 453 U HOH 454 5 HOH HOH 454 U HOH 455 5 HOH HOH 455 U HOH 456 5 HOH HOH 456 U HOH 457 5 HOH HOH 457 U HOH 458 5 HOH HOH 458 U HOH 459 5 HOH HOH 459 U HOH 460 5 HOH HOH 460 U HOH 461 5 HOH HOH 461 U HOH 462 5 HOH HOH 462 U HOH 463 5 HOH HOH 463 U HOH 464 5 HOH HOH 464 U HOH 465 5 HOH HOH 465 U HOH 466 5 HOH HOH 466 U HOH 467 5 HOH HOH 467 U HOH 468 5 HOH HOH 468 U HOH 469 5 HOH HOH 469 U HOH 470 5 HOH HOH 470 U HOH 471 5 HOH HOH 471 U HOH 472 5 HOH HOH 472 U HOH 473 5 HOH HOH 473 U HOH 474 5 HOH HOH 474 U HOH 475 5 HOH HOH 475 U HOH 476 5 HOH HOH 476 U HOH 477 5 HOH HOH 477 U HOH 478 5 HOH HOH 478 U HOH 479 5 HOH HOH 479 U HOH 480 5 HOH HOH 480 U HOH 481 5 HOH HOH 481 U HOH 482 5 HOH HOH 482 U HOH 483 5 HOH HOH 483 U HOH 484 5 HOH HOH 484 U HOH 485 5 HOH HOH 485 U HOH 486 5 HOH HOH 486 U HOH 487 5 HOH HOH 487 U HOH 488 5 HOH HOH 488 U HOH 489 5 HOH HOH 489 U HOH 490 5 HOH HOH 490 U HOH 491 5 HOH HOH 491 U HOH 492 5 HOH HOH 492 U HOH 493 5 HOH HOH 493 U HOH 494 5 HOH HOH 494 U HOH 495 5 HOH HOH 495 U HOH 496 5 HOH HOH 496 U HOH 497 5 HOH HOH 497 U HOH 498 5 HOH HOH 498 U HOH 499 5 HOH HOH 499 U HOH 500 5 HOH HOH 500 U HOH 501 5 HOH HOH 501 U HOH 502 5 HOH HOH 502 U HOH 503 5 HOH HOH 503 U HOH 504 5 HOH HOH 504 U HOH 505 5 HOH HOH 505 U HOH 506 5 HOH HOH 506 U HOH 507 5 HOH HOH 507 U HOH 508 5 HOH HOH 508 U HOH 509 5 HOH HOH 509 U HOH 510 5 HOH HOH 510 U HOH 511 5 HOH HOH 511 U HOH 512 5 HOH HOH 512 U HOH 513 5 HOH HOH 513 U HOH 514 5 HOH HOH 514 U HOH 515 5 HOH HOH 515 U HOH 516 5 HOH HOH 516 U HOH 517 5 HOH HOH 517 U HOH 518 5 HOH HOH 518 U HOH 519 5 HOH HOH 519 U HOH 520 5 HOH HOH 520 U HOH 521 5 HOH HOH 521 U HOH 522 5 HOH HOH 522 U HOH 523 5 HOH HOH 523 U HOH 524 5 HOH HOH 524 U HOH 525 5 HOH HOH 525 U HOH 526 5 HOH HOH 526 U HOH 527 5 HOH HOH 527 U HOH 528 5 HOH HOH 528 U HOH 529 5 HOH HOH 529 U HOH 530 5 HOH HOH 530 U HOH 531 5 HOH HOH 531 U HOH 532 5 HOH HOH 532 U HOH 533 5 HOH HOH 533 U HOH 534 5 HOH HOH 534 U HOH 535 5 HOH HOH 535 U HOH 536 5 HOH HOH 536 U HOH 537 5 HOH HOH 537 U HOH 538 5 HOH HOH 538 U HOH 539 5 HOH HOH 539 U HOH 540 5 HOH HOH 540 U HOH 541 5 HOH HOH 541 U HOH 542 5 HOH HOH 542 U HOH 543 5 HOH HOH 543 U HOH 544 5 HOH HOH 544 U HOH 545 5 HOH HOH 545 U HOH 546 5 HOH HOH 546 U HOH 547 5 HOH HOH 547 U HOH 548 5 HOH HOH 548 U HOH 549 5 HOH HOH 549 U HOH 550 5 HOH HOH 550 U HOH 551 5 HOH HOH 551 U HOH 552 5 HOH HOH 552 U HOH 553 5 HOH HOH 553 U HOH 554 5 HOH HOH 554 U HOH 555 5 HOH HOH 555 U HOH 556 5 HOH HOH 556 U HOH 557 5 HOH HOH 557 U HOH 558 5 HOH HOH 558 U HOH 559 5 HOH HOH 559 U HOH 560 5 HOH HOH 560 U HOH 561 5 HOH HOH 561 U HOH 562 5 HOH HOH 562 U HOH 563 5 HOH HOH 563 U HOH 564 5 HOH HOH 564 U HOH 565 5 HOH HOH 565 U HOH 566 5 HOH HOH 566 U HOH 567 5 HOH HOH 567 U HOH 568 5 HOH HOH 568 U HOH 569 5 HOH HOH 569 U HOH 570 5 HOH HOH 570 U HOH 571 5 HOH HOH 571 U HOH 572 5 HOH HOH 572 U HOH 573 5 HOH HOH 573 U HOH 574 5 HOH HOH 574 U HOH 575 5 HOH HOH 575 U HOH 576 5 HOH HOH 576 U HOH 577 5 HOH HOH 577 U HOH 578 5 HOH HOH 578 U HOH 579 5 HOH HOH 579 U HOH 580 5 HOH HOH 580 U HOH 581 5 HOH HOH 581 U HOH 582 5 HOH HOH 582 U HOH 583 5 HOH HOH 583 U HOH 584 5 HOH HOH 584 U HOH 585 5 HOH HOH 585 U HOH 586 5 HOH HOH 586 U HOH 587 5 HOH HOH 587 U HOH 588 5 HOH HOH 588 U HOH 589 5 HOH HOH 589 U HOH 590 5 HOH HOH 590 U HOH 591 5 HOH HOH 591 U HOH 592 5 HOH HOH 592 U HOH 593 5 HOH HOH 593 U HOH 594 5 HOH HOH 594 U HOH 595 5 HOH HOH 595 U HOH 596 5 HOH HOH 596 U HOH 597 5 HOH HOH 597 U HOH 598 5 HOH HOH 598 U HOH 599 5 HOH HOH 599 U HOH 600 5 HOH HOH 600 U HOH 601 5 HOH HOH 601 U HOH 602 5 HOH HOH 602 U HOH 603 5 HOH HOH 603 U HOH 604 5 HOH HOH 604 U HOH 605 5 HOH HOH 605 U HOH 606 5 HOH HOH 606 U HOH 607 5 HOH HOH 607 U HOH 608 5 HOH HOH 608 U HOH 609 5 HOH HOH 609 U HOH 610 5 HOH HOH 610 U HOH 611 5 HOH HOH 611 U HOH 612 5 HOH HOH 612 U HOH 613 5 HOH HOH 613 U HOH 614 5 HOH HOH 614 U ILE 16 n 1 ILE 16 U ILE 17 n 2 ILE 17 U GLY 18 n 3 GLY 18 U GLY 19 n 4 GLY 19 U GLU 20 n 5 GLU 20 U PHE 21 n 6 PHE 21 U THR 22 n 7 THR 22 U THR 23 n 8 THR 23 U ILE 24 n 9 ILE 24 U GLU 25 n 10 GLU 25 U ASN 26 n 11 ASN 26 U GLN 27 n 12 GLN 27 U PRO 28 n 13 PRO 28 U TRP 29 n 14 TRP 29 U PHE 30 n 15 PHE 30 U ALA 31 n 16 ALA 31 U ALA 32 n 17 ALA 32 U ILE 33 n 18 ILE 33 U TYR 34 n 19 TYR 34 U ARG 35 n 20 ARG 35 U ARG 36 n 21 ARG 36 U HIS 37 n 22 HIS 37 U ARG 37 n 23 A ARG 37 U GLY 37 n 24 B GLY 37 U GLY 37 n 25 C GLY 37 U SER 37 n 26 D SER 37 U VAL 38 n 27 VAL 38 U THR 39 n 28 THR 39 U TYR 40 n 29 TYR 40 U VAL 41 n 30 VAL 41 U CYS 42 n 31 CYS 42 U GLY 43 n 32 GLY 43 U GLY 44 n 33 GLY 44 U SER 45 n 34 SER 45 U LEU 46 n 35 LEU 46 U ILE 47 n 36 ILE 47 U SER 48 n 37 SER 48 U PRO 49 n 38 PRO 49 U CYS 50 n 39 CYS 50 U TRP 51 n 40 TRP 51 U VAL 52 n 41 VAL 52 U ILE 53 n 42 ILE 53 U SER 54 n 43 SER 54 U ALA 55 n 44 ALA 55 U THR 56 n 45 THR 56 U HIS 57 n 46 HIS 57 U CYS 58 n 47 CYS 58 U PHE 59 n 48 PHE 59 U ILE 60 n 49 ILE 60 U ASP 60 n 50 A ASP 60 U TYR 60 n 51 B TYR 60 U PRO 60 n 52 C PRO 60 U LYS 61 n 53 LYS 61 U LYS 62 n 54 LYS 62 U GLU 62 n 55 A GLU 62 U ASP 63 n 56 ASP 63 U TYR 64 n 57 TYR 64 U ILE 65 n 58 ILE 65 U VAL 66 n 59 VAL 66 U TYR 67 n 60 TYR 67 U LEU 68 n 61 LEU 68 U GLY 69 n 62 GLY 69 U ARG 70 n 63 ARG 70 U SER 71 n 64 SER 71 U ARG 72 n 65 ARG 72 U LEU 73 n 66 LEU 73 U ASN 74 n 67 ASN 74 U SER 75 n 68 SER 75 U ASN 76 n 69 ASN 76 U THR 77 n 70 THR 77 U GLN 78 n 71 GLN 78 U GLY 79 n 72 GLY 79 U GLU 80 n 73 GLU 80 U MET 81 n 74 MET 81 U LYS 82 n 75 LYS 82 U PHE 83 n 76 PHE 83 U GLU 84 n 77 GLU 84 U VAL 85 n 78 VAL 85 U GLU 86 n 79 GLU 86 U ASN 87 n 80 ASN 87 U LEU 88 n 81 LEU 88 U ILE 89 n 82 ILE 89 U LEU 90 n 83 LEU 90 U HIS 91 n 84 HIS 91 U LYS 92 n 85 LYS 92 U ASP 93 n 86 ASP 93 U TYR 94 n 87 TYR 94 U SER 95 n 88 SER 95 U ALA 96 n 89 ALA 96 U ASP 97 n 90 ASP 97 U THR 97 n 91 A THR 97 U LEU 97 n 92 B LEU 97 U ALA 98 n 93 ALA 98 U HIS 99 n 94 HIS 99 U HIS 100 n 95 HIS 100 U ASN 101 n 96 ASN 101 U ASP 102 n 97 ASP 102 U ILE 103 n 98 ILE 103 U ALA 104 n 99 ALA 104 U LEU 105 n 100 LEU 105 U LEU 106 n 101 LEU 106 U LYS 107 n 102 LYS 107 U ILE 108 n 103 ILE 108 U ARG 109 n 104 ARG 109 U SER 110 n 105 SER 110 U LYS 110 n 106 A LYS 110 U GLU 110 n 107 B GLU 110 U GLY 110 n 108 C GLY 110 U ARG 110 n 109 D ARG 110 U CYS 111 n 110 CYS 111 U ALA 112 n 111 ALA 112 U GLN 113 n 112 GLN 113 U PRO 114 n 113 PRO 114 U SER 115 n 114 SER 115 U ARG 116 n 115 ARG 116 U THR 117 n 116 THR 117 U ILE 118 n 117 ILE 118 U GLN 119 n 118 GLN 119 U THR 120 n 119 THR 120 U ILE 121 n 120 ILE 121 U ALA 122 n 121 ALA 122 U LEU 123 n 122 LEU 123 U PRO 124 n 123 PRO 124 U SER 125 n 124 SER 125 U MET 126 n 125 MET 126 U TYR 127 n 126 TYR 127 U ASN 128 n 127 ASN 128 U ASP 129 n 128 ASP 129 U PRO 130 n 129 PRO 130 U GLN 131 n 130 GLN 131 U PHE 132 n 131 PHE 132 U GLY 133 n 132 GLY 133 U THR 134 n 133 THR 134 U SER 135 n 134 SER 135 U CYS 136 n 135 CYS 136 U GLU 137 n 136 GLU 137 U ILE 138 n 137 ILE 138 U THR 139 n 138 THR 139 U GLY 140 n 139 GLY 140 U PHE 141 n 140 PHE 141 U GLY 142 n 141 GLY 142 U LYS 143 n 142 LYS 143 U GLU 144 n 143 GLU 144 U GLN 145 n 144 GLN 145 U SER 146 n 145 SER 146 U THR 147 n 146 THR 147 U ASP 148 n 147 ASP 148 U TYR 149 n 148 TYR 149 U LEU 150 n 149 LEU 150 U TYR 151 n 150 TYR 151 U PRO 152 n 151 PRO 152 U GLU 153 n 152 GLU 153 U GLN 154 n 153 GLN 154 U LEU 155 n 154 LEU 155 U LYS 156 n 155 LYS 156 U MET 157 n 156 MET 157 U THR 158 n 157 THR 158 U VAL 159 n 158 VAL 159 U VAL 160 n 159 VAL 160 U LYS 161 n 160 LYS 161 U LEU 162 n 161 LEU 162 U ILE 163 n 162 ILE 163 U SER 164 n 163 SER 164 U HIS 165 n 164 HIS 165 U ARG 166 n 165 ARG 166 U GLU 167 n 166 GLU 167 U CYS 168 n 167 CYS 168 U GLN 169 n 168 GLN 169 U GLN 170 n 169 GLN 170 U PRO 170 n 170 A PRO 170 U HIS 170 n 171 B HIS 170 U TYR 171 n 172 TYR 171 U TYR 172 n 173 TYR 172 U GLY 173 n 174 GLY 173 U SER 174 n 175 SER 174 U GLU 175 n 176 GLU 175 U VAL 176 n 177 VAL 176 U THR 177 n 178 THR 177 U THR 178 n 179 THR 178 U LYS 179 n 180 LYS 179 U MET 180 n 181 MET 180 U LEU 181 n 182 LEU 181 U CYS 182 n 183 CYS 182 U ALA 183 n 184 ALA 183 U ALA 184 n 185 ALA 184 U ASP 185 n 186 ASP 185 U PRO 185 n 187 A PRO 185 U GLN 185 n 188 B GLN 185 U TRP 186 n 189 TRP 186 U LYS 187 n 190 LYS 187 U THR 188 n 191 THR 188 U ASP 189 n 192 ASP 189 U SER 190 n 193 SER 190 U CYS 191 n 194 CYS 191 U GLN 192 n 195 GLN 192 U GLY 193 n 196 GLY 193 U ASP 194 n 197 ASP 194 U SER 195 n 198 SER 195 U GLY 196 n 199 GLY 196 U GLY 197 n 200 GLY 197 U PRO 198 n 201 PRO 198 U LEU 199 n 202 LEU 199 U VAL 200 n 203 VAL 200 U CYS 201 n 204 CYS 201 U SER 202 n 205 SER 202 U LEU 203 n 206 LEU 203 U GLN 204 n 207 GLN 204 U GLY 205 n 208 GLY 205 U ARG 206 n 209 ARG 206 U MET 207 n 210 MET 207 U THR 208 n 211 THR 208 U LEU 209 n 212 LEU 209 U THR 210 n 213 THR 210 U GLY 211 n 214 GLY 211 U ILE 212 n 215 ILE 212 U VAL 213 n 216 VAL 213 U SER 214 n 217 SER 214 U TRP 215 n 218 TRP 215 U GLY 216 n 219 GLY 216 U ARG 217 n 220 ARG 217 U GLY 219 n 221 GLY 219 U CYS 220 n 222 CYS 220 U ALA 221 n 223 ALA 221 U LEU 222 n 224 LEU 222 U LYS 223 n 225 LYS 223 U ASP 223 n 226 A ASP 223 U LYS 224 n 227 LYS 224 U PRO 225 n 228 PRO 225 U GLY 226 n 229 GLY 226 U VAL 227 n 230 VAL 227 U TYR 228 n 231 TYR 228 U THR 229 n 232 THR 229 U ARG 230 n 233 ARG 230 U VAL 231 n 234 VAL 231 U SER 232 n 235 SER 232 U HIS 233 n 236 HIS 233 U PHE 234 n 237 PHE 234 U LEU 235 n 238 LEU 235 U PRO 236 n 239 PRO 236 U TRP 237 n 240 TRP 237 U ILE 238 n 241 ILE 238 U ARG 239 n 242 ARG 239 U SER 240 n 243 SER 240 U HIS 241 n 244 HIS 241 U THR 242 n 245 THR 242 U LYS 243 n 246 LYS 243 U author_and_software_defined_assembly PISA 1 monomeric gel filtration 650 -23 11260 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 U N GLU 20 A N GLU 5 U O MET 157 A O MET 156 U N LYS 161 A N LYS 160 U O ALA 184 A O ALA 185 U N LEU 181 A N LEU 182 U O TYR 228 A O TYR 231 U O VAL 227 A O VAL 230 U N TRP 215 A N TRP 218 U O ARG 206 A O ARG 209 U N LEU 203 A N LEU 206 U O VAL 200 A O VAL 203 U N GLU 137 A N GLU 136 U N CYS 136 A N CYS 135 U O VAL 160 A O VAL 159 U N ILE 33 A N ILE 18 U O VAL 41 A O VAL 30 U N SER 45 A N SER 34 U O ILE 53 A O ILE 42 U N VAL 52 A N VAL 41 U O LEU 106 A O LEU 101 U O LEU 105 A O LEU 100 U N ILE 89 A N ILE 82 U O PHE 83 A O PHE 76 U N VAL 66 A N VAL 59 U O ILE 65 A O ILE 58 U N TYR 34 A N TYR 19 U N SER 95 A N SER 88 U O HIS 100 A O HIS 95 1 U U O O HOH HOH 582 591 1.85 1 U U OE1 O GLU HOH 84 401 2.10 1 3.14 0.50 120.30 123.44 U U U NE CZ NH1 ARG ARG ARG 72 72 72 N A A 1 U U CD N PRO PRO 170 170 0.098 0.014 1.474 1.572 N 1 U U OE1 NH2 GLU ARG 86 166 1.94 1_555 5_454 1 U U CD NH2 GLU ARG 86 166 2.14 1_555 5_454 1 U GLN 27 -156.88 65.09 1 U SER 54 -151.21 -157.97 A 1 U THR 97 -33.07 -39.46 1 U TYR 171 -96.81 -103.80 1 U SER 214 -123.90 -60.19 18.26 -0.10000 -0.05000 0.00000 -0.10000 0.00000 0.33000 0.960 0.945 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.228 0.197 0.198 1.18 50.00 3695 69904 5.000 95.9 1.654 0.034 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.050 0.049 0.80 0.80 1.20 4DVA 1.18 50.00 214 2190 34 0 1942 0.008 0.019 2035 0.003 0.020 1900 1.405 1.961 2745 0.929 3.000 4389 6.596 5.000 244 34.037 23.218 87 14.108 15.000 339 16.000 15.000 13 0.077 0.200 292 0.006 0.021 2242 0.002 0.020 473 0.887 1.557 982 0.884 1.554 981 1.094 2.333 1224 1.094 2.336 1225 1.114 1.887 1053 1.111 1.887 1053 1.199 2.703 1522 2.075 14.188 2426 2.074 14.199 2427 5.765 3.000 3932 17.309 5.000 70 4.575 5.000 4026 0.3200 0.2890 1.21 157 3036 20 56.34 1.130 50.000 5YC6 73602 0.083 1 29.5000 3.600 97.8 0.450 1.130 1 refinement REFMAC 5.8.0103 data processing HKL-2000 N The crystal structure of uPA in complex with 4-Bromobenzylamirne at pH4.6 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N U THR 23 A THR 8 HELX_P U GLN 27 A GLN 12 5 AA1 5 U ALA 55 A ALA 44 HELX_P U PHE 59 A PHE 48 5 AA2 5 U LYS 61 A LYS 53 HELX_P U GLU 62 A GLU 55 5 AA3 3 A U SER 164 A SER 163 HELX_P U GLN 169 A GLN 168 1 AA4 6 U TYR 172 A TYR 173 HELX_P U VAL 176 A VAL 177 5 AA5 5 U PHE 234 A PHE 237 HELX_P U THR 242 A THR 245 1 AA6 9 disulf 2.032 U CYS 42 A SG CYS 31 1_555 U CYS 58 A SG CYS 47 1_555 disulf 2.027 U CYS 50 A SG CYS 39 1_555 U CYS 111 A SG CYS 110 1_555 disulf 2.033 U CYS 136 A SG CYS 135 1_555 U CYS 201 A SG CYS 204 1_555 disulf 2.024 U CYS 168 A SG CYS 167 1_555 U CYS 182 A SG CYS 183 1_555 disulf 2.080 U CYS 191 A SG CYS 194 1_555 U CYS 220 A SG CYS 222 1_555 HYDROLASE/HYDROLASE INHIBITOR halogen bonding, serine protease, uPA, P1 group, protease inhibitors, HYDROLASE-HYDROLASE INHIBITOR complex UROK_HUMAN UNP 1 179 P00749 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVK LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW IRSHTK 179 424 5YC6 16 243 P00749 U 1 1 246 1 CYS conflict ALA 122 5YC6 U P00749 UNP 299 121 1 ASN conflict GLN 145 5YC6 U P00749 UNP 322 144 8 7 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel U GLU 20 A GLU 5 U PHE 21 A PHE 6 U LYS 156 A LYS 155 U ILE 163 A ILE 162 U MET 180 A MET 181 U ALA 184 A ALA 185 U GLY 226 A GLY 229 U ARG 230 A ARG 233 U ARG 206 A ARG 209 U TRP 215 A TRP 218 U PRO 198 A PRO 201 U LEU 203 A LEU 206 U SER 135 A SER 134 U GLY 140 A GLY 139 U LYS 156 A LYS 155 U ILE 163 A ILE 162 U PHE 30 A PHE 15 U ARG 36 A ARG 21 U VAL 38 A VAL 27 U SER 48 A SER 37 U TRP 51 A TRP 40 U SER 54 A SER 43 U ALA 104 A ALA 99 U ARG 109 A ARG 104 U MET 81 A MET 74 U LEU 90 A LEU 83 U TYR 64 A TYR 57 U LEU 68 A LEU 61 U PHE 30 A PHE 15 U ARG 36 A ARG 21 U SER 95 A SER 88 U ALA 96 A ALA 89 U HIS 99 A HIS 94 U HIS 100 A HIS 95 binding site for residue PZH U 301 U PZH 301 Software 13 binding site for residue SO4 U 302 U SO4 302 Software 9 binding site for residue PGE U 303 U PGE 303 Software 7 binding site for residue PGE U 304 U PGE 304 Software 4 U ASP 189 A ASP 192 13 1_555 U SER 190 A SER 193 13 1_555 U CYS 191 A CYS 194 13 1_555 U GLN 192 A GLN 195 13 1_555 U SER 195 A SER 198 13 1_555 U TRP 215 A TRP 218 13 1_555 U GLY 219 A GLY 221 13 1_555 U CYS 220 A CYS 222 13 1_555 U GLY 226 A GLY 229 13 1_555 U SO4 302 C SO4 13 1_555 U HOH 474 F HOH 13 1_555 U HOH 493 F HOH 13 1_555 U HOH 516 F HOH 13 1_555 U HIS 57 A HIS 46 9 1_555 U GLN 192 A GLN 195 9 1_555 U GLY 193 A GLY 196 9 1_555 U SER 195 A SER 198 9 1_555 U PZH 301 B PZH 9 1_555 U HOH 409 F HOH 9 1_555 U HOH 460 F HOH 9 1_555 U HOH 484 F HOH 9 1_555 U HOH 552 F HOH 9 1_555 U LEU 162 A LEU 161 7 1_555 U ALA 184 A ALA 185 7 1_555 U ASP 185 A ASP 186 7 1_555 U PRO 185 A PRO 187 A 7 1_555 U TRP 186 A TRP 189 7 1_555 U HOH 525 F HOH 7 1_555 U HOH 532 F HOH 7 1_555 U VAL 38 A VAL 27 4 1_555 U ASN 74 A ASN 67 4 1_555 U SER 135 A SER 134 4 6_445 U SER 202 A SER 205 4 6_445 146 H 3